Metagenome Family F080859

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F080859
Family Type	Metagenome
Number of Sequences	114
Average Sequence Length	56 residues
Representative Sequence	TRKVKPYPAVPDDIEPVPETWQVIGSVVVGFVLVALMVVCLLLFFTGLWIWSLLI
Number of Associated Samples	69
Number of Associated Scaffolds	114

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	69.57 %
% of genes near scaffold ends (potentially truncated)	3.51 %
% of genes from short scaffolds (< 2000 bps)	8.77 %
Associated GOLD sequencing projects	65
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.54

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (83.333 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake (50.877 % of family members)
Environment Ontology (ENVO)	Unclassified (80.702 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline) (75.439 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 43.37% β-sheet: 0.00% Coil/Unstructured: 56.63%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.54
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.54
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 114 Family Scaffolds
PF08291	Peptidase_M15_3	7.02
PF13392	HNH_3	3.51
PF00239	Resolvase	1.75
PF13384	HTH_23	1.75
PF09588	YqaJ	1.75
PF00271	Helicase_C	1.75
PF00476	DNA_pol_A	1.75
PF05127	Helicase_RecD	1.75
PF06048	DUF927	0.88
PF10991	DUF2815	0.88
PF05869	Dam	0.88
PF13661	2OG-FeII_Oxy_4	0.88
PF10765	Phage_P22_NinX	0.88
PF08774	VRR_NUC	0.88
PF11753	DUF3310	0.88
PF08241	Methyltransf_11	0.88
PF05876	GpA_ATPase	0.88

COG ID	Name	Functional Category	% Frequency in 114 Family Scaffolds
COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	Replication, recombination and repair [L]	1.75
COG1444	tRNA(Met) C34 N-acetyltransferase TmcA	Translation, ribosomal structure and biogenesis [J]	1.75
COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	Replication, recombination and repair [L]	1.75
COG2452	Predicted site-specific integrase-resolvase	Mobilome: prophages, transposons [X]	1.75
COG5519	Predicted ATPase domain of Cch-like helicases, DUF927 family	General function prediction only [R]	0.88
COG5525	Phage terminase, large subunit GpA	Mobilome: prophages, transposons [X]	0.88

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	83.33 %
All Organisms	root	All Organisms	16.67 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	83.33 %
Viruses	superkingdom	All Organisms → Viruses	15.79 %
cellular organisms	root	All Organisms → cellular organisms	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	83.33 %
Duplodnaviria	clade	All Organisms → Viruses → Duplodnaviria	12.28 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	3.51 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	83.33 %
Heunggongvirae	kingdom	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	12.28 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	3.51 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	83.33 %
Uroviricota	phylum	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota	12.28 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	3.51 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	83.33 %
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	12.28 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	3.51 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	83.33 %
environmental samples	no rank	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples	12.28 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	3.51 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	83.33 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	12.28 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	3.51 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	0.88 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300003388\|JGI25910J50241_10003238	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	5917	Open in IMG/M
3300003394\|JGI25907J50239_1057726	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	781	Open in IMG/M
3300005581\|Ga0049081_10000110	Not Available	30736	Open in IMG/M
3300008266\|Ga0114363_1016430	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	3337	Open in IMG/M
3300008448\|Ga0114876_1119165	All Organisms → Viruses → Predicted Viral	1015	Open in IMG/M
3300010160\|Ga0114967_10418193	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	666	Open in IMG/M
3300013006\|Ga0164294_10000668	Not Available	32593	Open in IMG/M
3300015050\|Ga0181338_1004653	All Organisms → cellular organisms → Bacteria	2344	Open in IMG/M
3300017747\|Ga0181352_1073825	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	961	Open in IMG/M
3300017780\|Ga0181346_1032248	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	2167	Open in IMG/M
3300017785\|Ga0181355_1025240	All Organisms → Viruses → Predicted Viral	2578	Open in IMG/M
3300019784\|Ga0181359_1094214	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1106	Open in IMG/M
3300019784\|Ga0181359_1146665	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	814	Open in IMG/M
3300020159\|Ga0211734_11147587	All Organisms → Viruses → Predicted Viral	1896	Open in IMG/M
3300025896\|Ga0208916_10033592	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	2069	Open in IMG/M
3300027659\|Ga0208975_1000380	Not Available	22244	Open in IMG/M
3300027798\|Ga0209353_10045651	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	2018	Open in IMG/M
3300027808\|Ga0209354_10164345	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	904	Open in IMG/M
3300032156\|Ga0315295_10701326	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1021	Open in IMG/M
3300033993\|Ga0334994_0007554	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	7604	Open in IMG/M
3300034012\|Ga0334986_0000449	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	35895	Open in IMG/M
3300034012\|Ga0334986_0001833	Not Available	17894	Open in IMG/M
3300034101\|Ga0335027_0220473	All Organisms → Viruses → Predicted Viral	1332	Open in IMG/M

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	100.00%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	99.12%
Marine	Environmental → Aquatic → Marine	0.88%

Habitat	Taxonomy	Distribution
Lentic	Environmental → Aquatic → Freshwater → Lentic	55.26%
Lake	Environmental → Aquatic → Freshwater → Lake	35.09%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified	5.26%
River	Environmental → Aquatic → Freshwater → River	1.75%
Ice	Environmental → Aquatic → Freshwater → Ice	1.75%
Coastal	Environmental → Aquatic → Marine → Coastal	0.88%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	54.39%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	28.95%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	6.14%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified → Unclassified	5.26%
Unclassified	Environmental → Aquatic → Freshwater → River → Unclassified	1.75%
Unclassified	Environmental → Aquatic → Freshwater → Ice → Unclassified	1.75%
Epilimnion	Environmental → Aquatic → Freshwater → Lentic → Epilimnion	0.88%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	0.88%

Habitat	Taxonomy	Distribution
Freshwater Lake	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake	50.88%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	13.16%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	6.14%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	5.26%
Freshwater	Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater	5.26%
Freshwater Lentic	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic	3.51%
Freshwater, Plankton	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton	3.51%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	3.51%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	3.51%
Freshwater	Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater	1.75%
Freshwater	Environmental → Aquatic → Freshwater → Ice → Unclassified → Freshwater	1.75%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater	0.88%
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	0.88%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300003277	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD	Environmental	Open in IMG/M
3300003388	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.SN	Environmental	Open in IMG/M
3300003393	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.DD	Environmental	Open in IMG/M
3300003394	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SN	Environmental	Open in IMG/M
3300005581	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF	Environmental	Open in IMG/M
3300005582	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF	Environmental	Open in IMG/M
3300008266	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample HABS-E2014-0108-C-NA	Environmental	Open in IMG/M
3300008339	Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - Sept 29, 2014 all contigs	Environmental	Open in IMG/M
3300008448	Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - August 4, 2014 all contigs	Environmental	Open in IMG/M
3300008450	Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - Oct 27, 2014 all contigs	Environmental	Open in IMG/M
3300009152	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG	Environmental	Open in IMG/M
3300009160	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_MF_MetaG	Environmental	Open in IMG/M
3300010160	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130628_MF_MetaG	Environmental	Open in IMG/M
3300011010	Freshwater microbial communities from Western Basin Lake Erie, Ontario, Canada - Station 970 - Surface Ice	Environmental	Open in IMG/M
3300011011	Freshwater microbial communities from Western Basin Lake Erie, Ontario, Canada - Station 970 - Top - Depth 1m	Environmental	Open in IMG/M
3300013006	Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES005 metaG	Environmental	Open in IMG/M
3300013372	Freshwater microbial communities from Lake Erie, Ontario, Canada. Combined Assembly of 10 SPs	Environmental	Open in IMG/M
3300015050	Freshwater viral communities from Lake Michigan, USA - Sp13.VD.MM110.S.D	Environmental	Open in IMG/M
3300017701	Freshwater viral communities from Lake Michigan, USA - Fa13.ND.MM110.S.N	Environmental	Open in IMG/M
3300017707	Freshwater viral communities from Lake Michigan, USA - Fa13.ND.MLB.S.N	Environmental	Open in IMG/M
3300017716	Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.DCM.D	Environmental	Open in IMG/M
3300017722	Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.S.N	Environmental	Open in IMG/M
3300017723	Freshwater viral communities from Lake Michigan, USA - Su13.ND.MM110.S.N	Environmental	Open in IMG/M
3300017736	Freshwater viral communities from Lake Michigan, USA - Fa13.ND.MM110.D.N	Environmental	Open in IMG/M
3300017747	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MLB.S.N	Environmental	Open in IMG/M
3300017761	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM110.S.N	Environmental	Open in IMG/M
3300017774	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM110.S.D	Environmental	Open in IMG/M
3300017777	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM110.D.N	Environmental	Open in IMG/M
3300017778	Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.S.D	Environmental	Open in IMG/M
3300017780	Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM15.D.N	Environmental	Open in IMG/M
3300017784	Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.D.N	Environmental	Open in IMG/M
3300017785	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.D.N	Environmental	Open in IMG/M
3300019784	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D	Environmental	Open in IMG/M
3300020159	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_108 megahit1	Environmental	Open in IMG/M
3300020530	Freshwater microbial communities from Lake Mendota, WI - 22OCT2012 deep hole epilimnion (SPAdes)	Environmental	Open in IMG/M
3300022190	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.N	Environmental	Open in IMG/M
3300022407	Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM15.S.D	Environmental	Open in IMG/M
3300025896	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_0.19_<0.8_DNA (SPAdes)	Environmental	Open in IMG/M
3300027493	Freshwater microbial communities from St. Lawrence River, New York, United States - Law_Cont_RepB_0h	Environmental	Open in IMG/M
3300027593	Freshwater microbial communities from St. Lawrence River, New York, United States - Law_Atlam_RepB_8h	Environmental	Open in IMG/M
3300027659	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF (SPAdes)	Environmental	Open in IMG/M
3300027697	Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MLB.DN (SPAdes)	Environmental	Open in IMG/M
3300027785	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SN (SPAdes)	Environmental	Open in IMG/M
3300027798	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD (SPAdes)	Environmental	Open in IMG/M
3300027804	Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MLB.SN (SPAdes)	Environmental	Open in IMG/M
3300027808	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.DD (SPAdes)	Environmental	Open in IMG/M
3300027971	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG (SPAdes)	Environmental	Open in IMG/M
3300031746	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G13_20	Environmental	Open in IMG/M
3300031784	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA112	Environmental	Open in IMG/M
3300031857	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125	Environmental	Open in IMG/M
3300031885	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G09_36	Environmental	Open in IMG/M
3300031963	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA116	Environmental	Open in IMG/M
3300032053	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G09_16	Environmental	Open in IMG/M
3300032093	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA117	Environmental	Open in IMG/M
3300032116	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA119	Environmental	Open in IMG/M
3300032156	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G14_0	Environmental	Open in IMG/M
3300032173	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C1_top	Environmental	Open in IMG/M
3300032275	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C1_bottom	Environmental	Open in IMG/M
3300032516	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G02_0	Environmental	Open in IMG/M
3300033993	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2012-rr0037	Environmental	Open in IMG/M
3300034012	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Aug2017-rr0027	Environmental	Open in IMG/M
3300034020	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Aug2015-rr0055	Environmental	Open in IMG/M
3300034061	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028	Environmental	Open in IMG/M
3300034101	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19Sep2005-rr0107	Environmental	Open in IMG/M
3300034105	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME15May2014-rr0127	Environmental	Open in IMG/M
3300034106	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23Aug2013-rr0131	Environmental	Open in IMG/M
3300034121	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19May2015-rr0174	Environmental	Open in IMG/M
3300034283	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Aug2003-rr0061	Environmental	Open in IMG/M
3300034356	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Jun2014-rr0152	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI25908J49247_100891941	3300003277	Freshwater Lake	LGGRNMIPDDIEPVPEVWQRIGSVVVGFVLAVLLVISFALFFTGLWIWSLLI*
JGI25908J49247_101160081	3300003277	Freshwater Lake	KPYPIVPDDIEPVPETWQVIGSVVVGFVLVALMVVCLLLFFTGIWIWSLLI*
JGI25908J49247_101449941	3300003277	Freshwater Lake	IPDDIAPVPEAWQMVGSVVVGFVLVALMVVCLLLFFTGIWIWSLLI*
JGI25910J50241_100032388	3300003388	Freshwater Lake	MIELETRKIKPYPVIPADIEPVPQVWQTVGSVVVGFVLVALMVVVLLLFFTGLWIWSLLI
JGI25909J50240_10962351	3300003393	Freshwater Lake	AYPAVPDDIEPVPETWQMIGSVVVGFVLVALVVIAVLFFFTGLXXWSLLI*
JGI25907J50239_10267551	3300003394	Freshwater Lake	MNEETRKIKPYPVIPDDIEPVPETWQVIGSVVVGFVLVALMVVCLLLFFTGLWVWSLLI*
JGI25907J50239_10577263	3300003394	Freshwater Lake	MIPDDIEPVPEVWQRIGSVVVGFVLAVLLVISFALFFTGLWIWSLLI*
Ga0049081_1000011013	3300005581	Freshwater Lentic	MNEEVRKVKPYPAVPDDIEPVPQSWQVIGSVLVGAALVVLMVICFAVFFTGLWIWSLLI*
Ga0049081_101432621	3300005581	Freshwater Lentic	FTTAGLEPETRKVKPYPAVPEDIEPVPETWQVIGSVVVGFVLVALVVIAALFFFTGFYIWSLLI*
Ga0049080_102465751	3300005582	Freshwater Lentic	TTAGLEPETRKVKPYPAVPQDIEPVPETWQVIGSVVVGFVLVALMVVCLLLFFTGLWIWSLLI*
Ga0114363_10164304	3300008266	Freshwater, Plankton	MDCHFTTAGLEPETRKVKPYPAVPEDIEPVPETWQVIGSVVVGFVLVALMVVCLLLFFTGLWIWSLLI*
Ga0114363_10816915	3300008266	Freshwater, Plankton	MDCHFTTAGLEPETRKVKPYPAVPQDIEPVPETWQVIGSVVVGFVLVALMVVCLLLFFTGIWIWSLLI*
Ga0114363_11377434	3300008266	Freshwater, Plankton	AYPIVPDDIEPVPQSWQVIGSVVVGFVLVALMVVCLLLFFTGLWVWSLLI*
Ga0114363_11702051	3300008266	Freshwater, Plankton	EPETRKVKPYPAVPEDIEPVPETWQVIGSVVVGFVLVALMVVCLLLFFTGLWIWSLLI*
Ga0114878_11055973	3300008339	Freshwater Lake	MDCHFTAAGLEPETRKVKPYPAVPDDIEPVPETWQVIGSVVVGFVLVALVVIAALFFFTGFYIWSLLI*
Ga0114876_11191651	3300008448	Freshwater Lake	METRKVKPYPEVPADIEPVPETWQVIGSVMVGAALVVLMVIGLAVFFTGLWVWSLLI
Ga0114880_10471553	3300008450	Freshwater Lake	MDCHFTTAGLEPETRKVKAYPIVLDDIEPVSETWQVIGSVVVGFVLVALMVVCLLLFFTGLWIWSLLI*
Ga0114880_10944803	3300008450	Freshwater Lake	MDCYFTTAGLEPETRKVKPYPAVPEDIEPVPETWQVIGSVVVGFVLVALMVVCLLLFFTGLWIWSLLI*
Ga0114980_108087141	3300009152	Freshwater Lake	FCHFTNAENEPETRKVKPYPTVPDDIEPVPQGWQIVGSVLVGVVLVALVVIAALFFFTGLWIWSLLI*
Ga0114981_102976492	3300009160	Freshwater Lake	MNEEVRKVKPYPIVPEDIEPVPQSWQIVGSVLVGFVLVALVVIAALFFFTGLWVWSLLI*
Ga0114967_104181932	3300010160	Freshwater Lake	MNTETDMEIVRKVKPYPIVPDDIEPVPQVWQVVGSVLVGFVLVALVVIAALFFFTGFYIWTLLI*
Ga0139557_10234972	3300011010	Freshwater	MDCHFTTAGLEPETRKIAPYPAVPEDIEPVPETWQVIGSVVVGFVLVALMVVCLLLFFTGLWIWSLLI*
Ga0139557_10762302	3300011010	Freshwater	AIPDDIAPVPQSWQIVGSVLVGFVFVALIVITALMFFTGLYIWSLLI*
Ga0139556_10164792	3300011011	Freshwater	VPETWQMVGSVVVGFVLVALVVIAVLFFFTGLYMWSLLI*
Ga0164294_1000066829	3300013006	Freshwater	MIPDDIEPVSDIWQVIGSVMVGFVLVVLFAICLVLFFTGLWVWSLLI*
Ga0177922_105551261	3300013372	Freshwater	AELEPETRKVKPYPIVPDDIEPVSETWQMIGSVVVGFVLVALVVVCLLLFFTGIWIWSLLI*
Ga0177922_107565302	3300013372	Freshwater	MDCYFTTAELEPETRKVKPYPIVPQDIEPVPETWQMIGSVVVGFVLVALVVIAALFFFTGFYIWSLLI*
Ga0177922_110886223	3300013372	Freshwater	MDCHFTTAELETRKVKAYPAVPDDIEPVPQSWQVIGSVVVGFVLVALMVVCLLLFFTGLWVWSLLI*
Ga0177922_111786294	3300013372	Freshwater	MDCHFTTAGLEPETRKVKAYPAVPEDIEPVPETWQVIGSVVVGFVLVALVVIAALFFFTGFYIWSLLI*
Ga0181338_10046533	3300015050	Freshwater Lake	MNEEVRKVKPYPIVPDDIEPVPQSWQVIGSVVVGFVLVALMVVCLLLFFTGLWVWSLLI*
Ga0181338_10051751	3300015050	Freshwater Lake	RKVKPYPIVPDDIEPVPQSWQVIGSVVVGFVLVALMVIAVLFFFTGLYIWSLLI*
Ga0181338_10322271	3300015050	Freshwater Lake	EEVRKVKPYPIVPDDIEPVPETWQVIGSVVVGFVLVALMVVCLLLFFTGIWIWSLLI*
Ga0181364_10519941	3300017701	Freshwater Lake	MIELETRKIKPYPVIPADIEPVPQVWQTVGSVVVGFVLVALMVVVLLLFFTGL
Ga0181364_10553042	3300017701	Freshwater Lake	PEAWQMIGSVVVGFVLVALVVVCLLLFFTGLWIWSLLI
Ga0181363_10050081	3300017707	Freshwater Lake	DDIEPVPETWQVIGSVVVGFVLVALVVIAALFFFTGLWIWSLLI
Ga0181350_10195544	3300017716	Freshwater Lake	GDLQQATSQALEGVLGQDRGADMNEEVRKVKPYPSVPDDIDPVPETWQMIGSVVVGFVLVALVVIAVLFFFTGLYIWSLLI
Ga0181350_10547093	3300017716	Freshwater Lake	MNEETRKVKPYPIVPADIEPVSDTWQIVGSVMVGAVLVVLLVICLALFFTGLWVWSLLI
Ga0181350_11127421	3300017716	Freshwater Lake	MIPDDIEPVPEVWQRIGSVVVGFVLASLFVICLGLFFTGLWVWSLLI
Ga0181347_10429971	3300017722	Freshwater Lake	DDIEPVPEAWQMIGSVVVGFVLVALVVVCLLLFFTGLWIWSLLI
Ga0181347_11113381	3300017722	Freshwater Lake	CHFTNAELEPETRKVKAYPAVPDDIEPVPEAWQMIGSVVVGFVLVALVVVCLLLFFTGLWIWSLLI
Ga0181362_11079091	3300017723	Freshwater Lake	GITTAGLEPETRKLRPYPAVPADIDPVPETWQMIGSVVVGFVLVALVVIAALFFFTGFYIWSLLI
Ga0181365_11594981	3300017736	Freshwater Lake	PADIEPVSDTWQIVGSVMVGAVLVVLLVICLALFFTGLWVWSLLI
Ga0181352_10738251	3300017747	Freshwater Lake	MIELETRKIKPYPVIPADIEPVPQVWQTVGSVVIGFVLVALMVVVLLLFFTGLWIWSLLI
Ga0181356_10275931	3300017761	Freshwater Lake	AGLEPETRKVKPYPAVPQDIEPVPETWQVIGSVVVGFVLVALMVVCLLLFFTGLWIWSLL
Ga0181358_10367504	3300017774	Freshwater Lake	TTAGLEPETRKVKPYPAVPQDIEPVPETWQVIGSVVVGFVLVALVVIAALFFFTGFYIWSLLI
Ga0181358_10375944	3300017774	Freshwater Lake	EGVLGQDRGADMNEEVRKVKPYPSVPDDIDPVPETWQMIGSVVVGFVLVALVVIAVLFFFTGLYIWSLLI
Ga0181358_10779091	3300017774	Freshwater Lake	TRKIAPYPAVPQDIEPVPETWQVIGSVVVGFVLVALVVVCLLLFFTGIWIWSLLI
Ga0181358_11237594	3300017774	Freshwater Lake	MIELETRKIKPYPVIPADIEPVPQVWQIVGSVVVGFVLVALMVVVLLLFFTGLWIWSLLI
Ga0181357_10593931	3300017777	Freshwater Lake	MVMPYPSVPDDIDPVPETWQMIGSVVVGFVLVALVVIAVLFFFTGLYIWSLLI
Ga0181357_11621211	3300017777	Freshwater Lake	ETRKIKPYPVIPADIEPVPQVWQTVGSVVVGFVLVALMVVVLLLFFTGLWIWSLLI
Ga0181357_12157011	3300017777	Freshwater Lake	EPVPETWQVIGSVVVGFVLVALVVIAALFFFTGFYIWSLLI
Ga0181357_12563111	3300017777	Freshwater Lake	ADIEPVPQVWQTVGSVVVGFVLVALMVVVLLLFFTGLWIWSLLI
Ga0181349_11152585	3300017778	Freshwater Lake	FTTAGLEPENRKVKPYPAVPEDIEPVPETWQVIGSVVVGFVLVALVVIAALFFFTGFYIWSLLI
Ga0181349_11739872	3300017778	Freshwater Lake	EAEPVPEVWQRIGSVVVGFVLAALFVICLGLFFTGLWVWSLLI
Ga0181349_12995631	3300017778	Freshwater Lake	MNEEVRKVKPWPAVPADIEPVSETWQMIGSVLVGFVLVALVVVVLLLFFTGLWIWSLLI
Ga0181346_10322487	3300017780	Freshwater Lake	MIELETRKIKPYPVIPADIEPVPQVWQTVGSVVVGFVLVALMVVCLLLFFTGLWIWSLLI
Ga0181346_10945864	3300017780	Freshwater Lake	GGRNMIPDDIEPVPEVWQRIGSVVVGFVLAVLLVISFALFFTGLWIWSLLI
Ga0181346_11584131	3300017780	Freshwater Lake	MIELETRKIKPYPVIPADIEPVPQVWQTVGSVVVGFVLVALMVVVLLLFFTGLWIWS
Ga0181346_13240303	3300017780	Freshwater Lake	WQVIGSVVVGFVLVALMVVCLLLFFTGLWVWSLLI
Ga0181348_12591351	3300017784	Freshwater Lake	DIEPVPETWQVIGSVVVGFVLVALVVIAALFFFTGFYIWSLLI
Ga0181355_10252409	3300017785	Freshwater Lake	LGQDRGADMNEEVRKVKPYPSVPDDIDPVPETWQMIGSVVVGFVLVALVVIAVLFFFTGLYIWSLLI
Ga0181359_10167532	3300019784	Freshwater Lake	MNEEVRKVKPYPSVPDDIDPVPETWQMIGSVVVGFVLVALVVIAVLFFFTGLYIWSLLI
Ga0181359_10942143	3300019784	Freshwater Lake	MIPDDIEPVPEVWQRIGSVVVGFVLAVLLVISFALFFTGLWIWSLLI
Ga0181359_11466652	3300019784	Freshwater Lake	MNEEVRKVKPYPIVPDDIEPVPETWQVIGSVVVGFVLVALMVVCLLLFFTGIWIWSLLI
Ga0211734_111475871	3300020159	Freshwater	MNEEVRKVKPYPIVPEDIEPVPQSWQIVGSVLVGFVLVALVVIAALFFFTGFYIWSLLI
Ga0208235_10229201	3300020530	Freshwater	NAELEPETRKVKAYPAVPDDIEPVPETWQVIGSVLVGFVLVALMVVCLLLFFTGLWIWSLLI
Ga0181354_10334661	3300022190	Freshwater Lake	PDDIEPVPEAWQMIGSVVVGFVLVALVVVCLLLFFTGLWIWSLLI
Ga0181354_11126714	3300022190	Freshwater Lake	MIELETRKIKPYPVIPADIEPVPQVWQTVGSVVVGFVLVALMVVCL
Ga0181354_11175244	3300022190	Freshwater Lake	FCHFTNAELEPETRKVKAYPAVPDDIEPVPEAWQMIGSVVVGFVLVALVVVCLLLFFTGLWIWSLLI
Ga0181354_11343541	3300022190	Freshwater Lake	WQRIGSVVVGFVLAALFVICLGLFFTGLWVWSLLI
Ga0181354_11357334	3300022190	Freshwater Lake	PDDIEPVPETWQVIGSVVVGFVLVALVVIAALFFFTGLWIWSLLI
Ga0181354_12305302	3300022190	Freshwater Lake	MNEETRRVKPWPVVPDDIEPVPEVWQRIGSVVVGFVLAALFVICLGLFFTGLWVWSLLI
Ga0181351_12729491	3300022407	Freshwater Lake	DIEPVPETWQVIGSVVVGFVLVALVVVCLLLFFTGIWIWSLLI
Ga0208916_100335921	3300025896	Aqueous	HFCHFTNAELEPEVVRKIKPYPVIPEDIEPVPQAWQMVGSVVVGFVLVALMVVFLLLFFTGLWVWSLLI
Ga0255103_10222231	3300027493	Freshwater	PAVPEDIEPVPETWQVIGSVVVGFVLVALVVIAALFFFTGLWVWSLLI
Ga0255118_10823232	3300027593	Freshwater	ETWQVIGSVVVGFALVALMVVCLLLFFTGLWIWSLLI
Ga0208975_100038023	3300027659	Freshwater Lentic	MNEEVRKVKPYPAVPDDIEPVPQSWQVIGSVLVGAALVVLMVICFAVFFTGLWIWSLLI
Ga0209033_11526224	3300027697	Freshwater Lake	TWQVIGSVVVGFVLVALVVIAALFFFTGLWIWSLLI
Ga0209246_100910143	3300027785	Freshwater Lake	EPVPETWQVIGSVVVGFVLVALMVVCLLLFFTGLWVWSLLI
Ga0209246_103354873	3300027785	Freshwater Lake	KPYPAVPEDIEPVPETWQVIGSVVVGFVLVALMVVCLLLFFTGLWIWSLLI
Ga0209353_100392375	3300027798	Freshwater Lake	ADMNEEVRKVKPYPSVPDDIDPVPETWQMIGSVVVGFVLVALVVIAVLFFFTGLYIWSLL
Ga0209353_100456513	3300027798	Freshwater Lake	MNEEVRKVKPYPIVPDDIEPVPQSWQVIGSVVVGFVLVALMVVCLLLFFTGLWVWSLLI
Ga0209353_103399921	3300027798	Freshwater Lake	PIVPDDIEPVPQAWQMIGSVVVGFVLVALVVIAVLFFFTGLYMWSLLI
Ga0209358_100233861	3300027804	Freshwater Lake	PVPETWQVIGSVVVGFVLVALVVIAALFFFTGLWIWSLLI
Ga0209354_101643454	3300027808	Freshwater Lake	MNEETRKVKPYPSVPDDIDPVPETWQMIGSVVVGFVLVALVVIAVLFFFTGLYIWS
Ga0209354_102162044	3300027808	Freshwater Lake	RKVKPYPAVPQDIEPVPETWQVIGSVVVGFALVALMVVCLLLFFTGLWIWSLLI
Ga0209401_10550328	3300027971	Freshwater Lake	VKPWPAVPADIEPVPQVWQTVGSVVVGFVLVALMVVVLLLFFTGLWVWSLLV
Ga0315293_109861583	3300031746	Sediment	EPETRKVKPYPIVPDDIAPVPQAWQMVGSVVVGFVLVALVVIAALFFFTGFYIWSLLI
Ga0315899_110239201	3300031784	Freshwater	TAGLEPETRKVKPYPAVPEDIEPVPETWQVIGSVVVGFVLVALMVVCLLLFFTGLWIWSLLI
Ga0315909_108566003	3300031857	Freshwater	TRKVKPYPAVPDDIEPVPETWQVIGSVVVGFVLVALMVVCLLLFFTGLWIWSLLI
Ga0315285_103361661	3300031885	Sediment	PETRKVKPYPIVPDDIAPVPQAWQMVGSVVVGFVLVALVVIAALFFFTGFYIWSLLI
Ga0315901_102423441	3300031963	Freshwater	TCGMDCYFTTAELETRKVKAYPIVPEDIEPVPQSWQVIGSVVVGFVLVALMVVCLLLFFTGLWVWSLLI
Ga0315284_117197401	3300032053	Sediment	VPDDIEPVPQGWQIVGSVLVGFVLVALVVIAALFFFTGFYIWTLLI
Ga0315902_108881264	3300032093	Freshwater	EDIEPVPETWQVIGSVVVGFVLVALMVVCLLLFFTGIWIWSLLI
Ga0315903_103936935	3300032116	Freshwater	GLEPETRKVKPYPAVPEDIEPVPETWQVIGSVVVGFVLVALMVVCLLLFFTGIWIWSLLI
Ga0315903_107920211	3300032116	Freshwater	SQALEGVLGQDRGADMNEEVRKVKPYPSVPDDIDPVPETWQMIGSVVVGFVLVALVVIAVLFFFTGLYIWSLLI
Ga0315295_107013265	3300032156	Sediment	MDCHFTTAGLEPETRKVKPYPAVPDDIAPVPETWQMIGSVVVGFVLVALVVIAVLVFFTGLWIWSLLI
Ga0315268_122440341	3300032173	Sediment	MNEETRKVKPYPEVPADIEPVPETWQVIGSVVVGFVLVALVVVCLLLFFTGLWIWSLLI
Ga0315270_110448561	3300032275	Sediment	HFCHFTNAGLETETRKVKAYPTVPDDIEPVPETWQMIGSVVVGFVLVALGVIAAMMFFTGLWIWSLLI
Ga0315273_115628201	3300032516	Sediment	NAENEPETRKVKPYPIVPDDIAPVPQAWQMVGSVVVGFVLVALVVIAALFFFTGFYIWSLLI
Ga0334994_0007554_1986_2192	3300033993	Freshwater	MDCHFTTAGLEPETRKVKPYPAVPQDIEPVSDTWQVIGSVVVGFVLVALMVVCLLLFFTGLWIWSLLI
Ga0334994_0010943_266_466	3300033993	Freshwater	MDCHFTTAELETRKVKPYPAVPEDIEPVPETWQVIGSVVVGFVLVALVVIAVLFFFTGLWIWSLLI
Ga0334986_0000449_13385_13591	3300034012	Freshwater	MDCHFTTAELEPETRKVKPYPIVPADIEPVSDTWQVIGSVVVGFVLVALVVIAALFFFTGFYIWSLLI
Ga0334986_0001833_4715_4921	3300034012	Freshwater	MDCHFTTAGLEPETRKIAPYPIVPADIEPVSDTWQMIGSVVVGFVLVALVVIAALFFFTGFYIWSLLV
Ga0334986_0345190_38_244	3300034012	Freshwater	MDCHFTTAELEPETRKVKPYPAVPQDIEPVPEAWLVIGSVVVGFVLVALMVVCLLLFFTGLWIWSLLI
Ga0335002_0565245_199_405	3300034020	Freshwater	MDCHFTTAGLEPETRKVKPYPAVPEDIEPVPETWQVIGSVVVGFVLVALMVVCLLLFFTGLWIWSLLI
Ga0334987_0468370_82_288	3300034061	Freshwater	MDCYFTTAELEPETRKVKPYPAVPDDISPVPEAWQIVGSVLVGFVLVALMVVCLLLFFTGLWIWSLLI
Ga0335027_0220473_508_648	3300034101	Freshwater	VPDDISPVPEAWQMIGSVVVGFVLVALFVICLGLFFTGLWVWSLLI
Ga0335035_0549962_458_619	3300034105	Freshwater	KIAPYPIVPADIEPVSDTWQVIGSVVVGFVLVALMVVCLLLFFTGIWIWSLLI
Ga0335036_0900345_356_496	3300034106	Freshwater	VPQDIEPVPETWQVIGSVVVGFVLVALMVVCLLLFFTGLWIWSLLI
Ga0335058_0584610_6_134	3300034121	Freshwater	MKPVPEGWQMIGSVLFGLAMAMLLVISFALFFTGLWVWTLLI
Ga0335007_0218674_1021_1227	3300034283	Freshwater	MDCYFTTAELEPETRKVKPYPAVPQDIEPVPETWQVIGSVVVGFVLVALMVVCLLLFFTGLWIWSLLI
Ga0335007_0459034_514_720	3300034283	Freshwater	MDCYFTTAELEPETRKVKPYPIVPADIEPVSDTWQVIGSVMVGFVLVGLMVVCLLLFFTGLWIWSLLI
Ga0335048_0038907_2958_3164	3300034356	Freshwater	HFCHFTNAENEPETRKVKAYPAVPDDIEPVPQAWQMAASVVVGFVLVVLVVIAVLFFFTGLWIWSLLI

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F080859

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences