NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F080629

Metagenome Family F080629

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F080629
Family Type Metagenome
Number of Sequences 115
Average Sequence Length 45 residues
Representative Sequence MKFYTDDYNVDVTQSGATNQSYSATFNCTNNCTKTISITQQ
Number of Associated Samples 96
Number of Associated Scaffolds 115

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 99.13 %
% of genes from short scaffolds (< 2000 bps) 88.70 %
Associated GOLD sequencing projects 82
AlphaFold2 3D model prediction Yes
3D model pTM-score0.28

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (81.739 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine
(29.565 % of family members)
Environment Ontology (ENVO) Unclassified
(83.478 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(93.913 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: Yes Secondary Structure distribution: α-helix: 0.00%    β-sheet: 13.04%    Coil/Unstructured: 86.96%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.28
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 115 Family Scaffolds
PF05226CHASE2 77.39
PF09834DUF2061 6.09
PF07995GSDH 0.87
PF07012Curlin_rpt 0.87
PF14464Prok-JAB 0.87
PF136402OG-FeII_Oxy_3 0.87

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 115 Family Scaffolds
COG4252Extracytoplasmic sensor domain CHASE2 (specificity unknown)Signal transduction mechanisms [T] 77.39
COG2133Glucose/arabinose dehydrogenase, beta-propeller foldCarbohydrate transport and metabolism [G] 0.87


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A81.74 %
All OrganismsrootAll Organisms18.26 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000117|DelMOWin2010_c10131099All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria858Open in IMG/M
3300001346|JGI20151J14362_10213027Not Available520Open in IMG/M
3300001450|JGI24006J15134_10011332All Organisms → cellular organisms → Bacteria → Proteobacteria4360Open in IMG/M
3300001450|JGI24006J15134_10139620Not Available809Open in IMG/M
3300001589|JGI24005J15628_10051757Not Available1579Open in IMG/M
3300001735|JGI24520J20079_1011316Not Available512Open in IMG/M
3300002511|JGI25131J35506_1000906Not Available4805Open in IMG/M
3300006735|Ga0098038_1193312Not Available661Open in IMG/M
3300006736|Ga0098033_1008284All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae3431Open in IMG/M
3300006736|Ga0098033_1086372Not Available898Open in IMG/M
3300006736|Ga0098033_1178276Not Available591Open in IMG/M
3300006749|Ga0098042_1032121Not Available1485Open in IMG/M
3300006753|Ga0098039_1003812Not Available5779Open in IMG/M
3300006753|Ga0098039_1012502Not Available3096Open in IMG/M
3300006793|Ga0098055_1126738Not Available990Open in IMG/M
3300006916|Ga0070750_10433967All Organisms → cellular organisms → Bacteria545Open in IMG/M
3300006928|Ga0098041_1085380Not Available1019Open in IMG/M
3300008216|Ga0114898_1117107Not Available785Open in IMG/M
3300008217|Ga0114899_1048748Not Available1517Open in IMG/M
3300008220|Ga0114910_1193743Not Available562Open in IMG/M
3300008221|Ga0114916_1043898Not Available1291Open in IMG/M
3300009003|Ga0102813_1158707Not Available704Open in IMG/M
3300009079|Ga0102814_10581662Not Available612Open in IMG/M
3300009080|Ga0102815_10341536Not Available829Open in IMG/M
3300009413|Ga0114902_1025189Not Available1879Open in IMG/M
3300009414|Ga0114909_1070553Not Available995Open in IMG/M
3300009472|Ga0115554_1127510Not Available1064Open in IMG/M
3300009476|Ga0115555_1279481Not Available675Open in IMG/M
3300009593|Ga0115011_11381781All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium TMED181616Open in IMG/M
3300009604|Ga0114901_1146685Not Available711Open in IMG/M
3300009605|Ga0114906_1022618All Organisms → cellular organisms → Bacteria → FCB group2568Open in IMG/M
3300009619|Ga0105236_1023422Not Available730Open in IMG/M
3300009703|Ga0114933_10188920All Organisms → Viruses → Predicted Viral1400Open in IMG/M
3300009791|Ga0105235_128419Not Available589Open in IMG/M
3300010148|Ga0098043_1095427All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium TMED181872Open in IMG/M
3300010148|Ga0098043_1159727Not Available635Open in IMG/M
3300011013|Ga0114934_10066172Not Available1819Open in IMG/M
3300012920|Ga0160423_11152672Not Available518Open in IMG/M
3300012952|Ga0163180_10408619Not Available994Open in IMG/M
3300012954|Ga0163111_10527454All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1093Open in IMG/M
3300012954|Ga0163111_12143287Not Available565Open in IMG/M
3300017706|Ga0181377_1015974Not Available1703Open in IMG/M
3300017709|Ga0181387_1040667Not Available919Open in IMG/M
3300017709|Ga0181387_1050897All Organisms → Viruses → environmental samples → uncultured virus825Open in IMG/M
3300017714|Ga0181412_1060963Not Available936Open in IMG/M
3300017717|Ga0181404_1068127Not Available885Open in IMG/M
3300017740|Ga0181418_1178281Not Available508Open in IMG/M
3300017743|Ga0181402_1068163Not Available942Open in IMG/M
3300017743|Ga0181402_1128978Not Available645Open in IMG/M
3300017743|Ga0181402_1152214All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium TMED181585Open in IMG/M
3300017751|Ga0187219_1098767All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria889Open in IMG/M
3300017760|Ga0181408_1063955Not Available973Open in IMG/M
3300017762|Ga0181422_1181980Not Available638Open in IMG/M
3300017765|Ga0181413_1074470Not Available1040Open in IMG/M
3300017767|Ga0181406_1032361All Organisms → Viruses → Predicted Viral1637Open in IMG/M
3300017768|Ga0187220_1058035Not Available1164Open in IMG/M
3300017775|Ga0181432_1194595Not Available635Open in IMG/M
3300017783|Ga0181379_1310103Not Available535Open in IMG/M
3300017786|Ga0181424_10457558Not Available514Open in IMG/M
3300020428|Ga0211521_10181137Not Available971Open in IMG/M
3300020438|Ga0211576_10339741Not Available775Open in IMG/M
3300020468|Ga0211475_10000873Not Available23975Open in IMG/M
3300021375|Ga0213869_10458624Not Available511Open in IMG/M
3300021378|Ga0213861_10125263Not Available1493Open in IMG/M
3300021443|Ga0206681_10354291Not Available567Open in IMG/M
3300021957|Ga0222717_10406658Not Available751Open in IMG/M
3300022074|Ga0224906_1141578All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.684Open in IMG/M
3300024247|Ga0228675_1055687Not Available823Open in IMG/M
(restricted) 3300024264|Ga0233444_10132648Not Available1237Open in IMG/M
3300024322|Ga0228656_1046821Not Available969Open in IMG/M
3300025042|Ga0207889_1014030Not Available745Open in IMG/M
3300025047|Ga0207897_109264Not Available1315Open in IMG/M
3300025049|Ga0207898_1024424Not Available766Open in IMG/M
3300025102|Ga0208666_1111434Not Available660Open in IMG/M
3300025102|Ga0208666_1138531Not Available556Open in IMG/M
3300025108|Ga0208793_1095320Not Available841Open in IMG/M
3300025112|Ga0209349_1058830Not Available1179Open in IMG/M
3300025122|Ga0209434_1053594Not Available1239Open in IMG/M
3300025122|Ga0209434_1084360Not Available928Open in IMG/M
3300025125|Ga0209644_1056430Not Available903Open in IMG/M
3300025125|Ga0209644_1111507All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Maricaulales → Maricaulaceae → Maricaulis → unclassified Maricaulis → Maricaulis sp.649Open in IMG/M
3300025125|Ga0209644_1125234Not Available612Open in IMG/M
3300025138|Ga0209634_1011186Not Available5382Open in IMG/M
3300025138|Ga0209634_1207788All Organisms → cellular organisms → Bacteria743Open in IMG/M
3300025168|Ga0209337_1017386Not Available4296Open in IMG/M
3300025251|Ga0208182_1041183Not Available999Open in IMG/M
3300025251|Ga0208182_1046323Not Available919Open in IMG/M
3300025267|Ga0208179_1029905Not Available1375Open in IMG/M
3300025267|Ga0208179_1091603Not Available612Open in IMG/M
3300025277|Ga0208180_1050037Not Available1077Open in IMG/M
3300025282|Ga0208030_1025184Not Available1904Open in IMG/M
3300025286|Ga0208315_1112740Not Available634Open in IMG/M
3300025286|Ga0208315_1132021Not Available569Open in IMG/M
3300025301|Ga0208450_1016079Not Available2259Open in IMG/M
3300025301|Ga0208450_1031455Not Available1422Open in IMG/M
3300025305|Ga0208684_1038943Not Available1361Open in IMG/M
3300025483|Ga0209557_1019284All Organisms → Viruses → Predicted Viral2242Open in IMG/M
3300025767|Ga0209137_1106470Not Available1109Open in IMG/M
3300025830|Ga0209832_1153820Not Available675Open in IMG/M
3300025870|Ga0209666_1029781Not Available3132Open in IMG/M
3300025897|Ga0209425_10493545Not Available565Open in IMG/M
3300027188|Ga0208921_1039898Not Available695Open in IMG/M
3300027278|Ga0208439_1006835Not Available2454Open in IMG/M
3300027753|Ga0208305_10060371Not Available1457Open in IMG/M
3300027757|Ga0208671_10080099Not Available1204Open in IMG/M
3300027771|Ga0209279_10109348Not Available793Open in IMG/M
3300027859|Ga0209503_10333347Not Available742Open in IMG/M
3300028022|Ga0256382_1151097Not Available557Open in IMG/M
3300028194|Ga0257106_1041774All Organisms → Viruses → Predicted Viral1762Open in IMG/M
3300028397|Ga0228639_1057144All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1082Open in IMG/M
3300028418|Ga0228615_1075987Not Available958Open in IMG/M
3300031757|Ga0315328_10872285Not Available500Open in IMG/M
3300032073|Ga0315315_10356413All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1361Open in IMG/M
3300032073|Ga0315315_11193738All Organisms → Viruses → environmental samples → uncultured virus673Open in IMG/M
3300032360|Ga0315334_10934487Not Available751Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine29.57%
Deep OceanEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean16.52%
SeawaterEnvironmental → Aquatic → Marine → Strait → Unclassified → Seawater15.65%
EstuarineEnvironmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine6.09%
SeawaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Seawater5.22%
SeawaterEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater4.35%
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine3.48%
Surface SeawaterEnvironmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater2.61%
MarineEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine2.61%
Pelagic MarineEnvironmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine2.61%
Marine OceanicEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine Oceanic1.74%
Pelagic MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine1.74%
Deep SubsurfaceEnvironmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface1.74%
SeawaterEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Seawater0.87%
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine0.87%
SeawaterEnvironmental → Aquatic → Marine → Inlet → Unclassified → Seawater0.87%
AqueousEnvironmental → Aquatic → Marine → Coastal → Unclassified → Aqueous0.87%
Estuarine WaterEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water0.87%
SeawaterEnvironmental → Aquatic → Marine → Pelagic → Unclassified → Seawater0.87%
MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine0.87%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000117Marine microbial communities from Delaware Coast, sample from Delaware MO Winter December 2010EnvironmentalOpen in IMG/M
3300001346Pelagic Microbial community sample from North Sea - COGITO 998_met_01EnvironmentalOpen in IMG/M
3300001450Marine viral communities from the Pacific Ocean - LP-53EnvironmentalOpen in IMG/M
3300001589Marine viral communities from the Pacific Ocean - LP-40EnvironmentalOpen in IMG/M
3300001735Marine viral communities from the Pacific Ocean - LP-45EnvironmentalOpen in IMG/M
3300002511Marine viral communities from the Pacific Ocean - ETNP_2_1000EnvironmentalOpen in IMG/M
3300006735Marine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaGEnvironmentalOpen in IMG/M
3300006736Marine viral communities from the Subarctic Pacific Ocean - 1_ETSP_OMZ_AT15124 metaGEnvironmentalOpen in IMG/M
3300006749Marine viral communities from the Subarctic Pacific Ocean - 9_ETSP_OMZ_AT15188 metaGEnvironmentalOpen in IMG/M
3300006753Marine viral communities from the Subarctic Pacific Ocean - 6_ETSP_OMZ_AT15160 metaGEnvironmentalOpen in IMG/M
3300006793Marine viral communities from the Subarctic Pacific Ocean - 17_ETSP_OMZ_AT15314 metaGEnvironmentalOpen in IMG/M
3300006916Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24EnvironmentalOpen in IMG/M
3300006928Marine viral communities from the Subarctic Pacific Ocean - 8_ETSP_OMZ_AT15162 metaGEnvironmentalOpen in IMG/M
3300008216Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_GeostarEnvironmentalOpen in IMG/M
3300008217Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_215EnvironmentalOpen in IMG/M
3300008220Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_908EnvironmentalOpen in IMG/M
3300008221Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_66EnvironmentalOpen in IMG/M
3300009003Estuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.725EnvironmentalOpen in IMG/M
3300009079Estuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.741EnvironmentalOpen in IMG/M
3300009080Estuarine microbial communities from the Columbia River estuary - Ebb tide ETM metaG S.759EnvironmentalOpen in IMG/M
3300009413Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s12EnvironmentalOpen in IMG/M
3300009414Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_906EnvironmentalOpen in IMG/M
3300009472Pelagic marine microbial communities from North Sea - COGITO_mtgs_110404EnvironmentalOpen in IMG/M
3300009476Pelagic marine microbial communities from North Sea - COGITO_mtgs_110407EnvironmentalOpen in IMG/M
3300009593Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT8 MetagenomeEnvironmentalOpen in IMG/M
3300009604Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s16EnvironmentalOpen in IMG/M
3300009605Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_M9EnvironmentalOpen in IMG/M
3300009619Marine viral communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling - metaG 3827_250EnvironmentalOpen in IMG/M
3300009703Deep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 4SBTROV12_W25 metaGEnvironmentalOpen in IMG/M
3300009791Marine viral communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling - metaG 3819_2500EnvironmentalOpen in IMG/M
3300010148Marine viral communities from the Subarctic Pacific Ocean - 9B_ETSP_OMZ_AT15188_CsCl metaGEnvironmentalOpen in IMG/M
3300011013Deep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 4SBTROV10_white metaGEnvironmentalOpen in IMG/M
3300012920Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St8 metaGEnvironmentalOpen in IMG/M
3300012952Marine eukaryotic phytoplankton communities from the Atlantic Ocean - Atlantic ANT 4 MetagenomeEnvironmentalOpen in IMG/M
3300012954Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St18 metaGEnvironmentalOpen in IMG/M
3300017706Marine viral communities from the Subarctic Pacific Ocean - Lowphox_13 viral metaGEnvironmentalOpen in IMG/M
3300017709Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 10 SPOT_SRF_2010-04-27EnvironmentalOpen in IMG/M
3300017714Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 35 SPOT_SRF_2012-08-15EnvironmentalOpen in IMG/M
3300017717Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 27 SPOT_SRF_2011-10-25EnvironmentalOpen in IMG/M
3300017740Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 41 SPOT_SRF_2013-03-13EnvironmentalOpen in IMG/M
3300017743Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 25 SPOT_SRF_2011-08-17EnvironmentalOpen in IMG/M
3300017751Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 13 SPOT_SRF_2010-07-21 (version 2)EnvironmentalOpen in IMG/M
3300017760Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 31 SPOT_SRF_2012-02-16EnvironmentalOpen in IMG/M
3300017762Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 45 SPOT_SRF_2013-07-18EnvironmentalOpen in IMG/M
3300017765Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 36 SPOT_SRF_2012-09-28EnvironmentalOpen in IMG/M
3300017767Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 29 SPOT_SRF_2011-12-20EnvironmentalOpen in IMG/M
3300017768Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 6 SPOT_SRF_2009-12-23 (version 2)EnvironmentalOpen in IMG/M
3300017775Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 55 SPOT_SRF_2014-07-17EnvironmentalOpen in IMG/M
3300017783Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 2 SPOT_SRF_2009-07-10EnvironmentalOpen in IMG/M
3300017786Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 47 SPOT_SRF_2013-09-18EnvironmentalOpen in IMG/M
3300020428Marine microbial communities from Tara Oceans - TARA_E500000331 (ERX556032-ERR599094)EnvironmentalOpen in IMG/M
3300020438Marine microbial communities from Tara Oceans - TARA_B100001094 (ERX555907-ERR598942)EnvironmentalOpen in IMG/M
3300020468Marine microbial communities from Tara Oceans - TARA_A100000164 (ERX555914-ERR598993)EnvironmentalOpen in IMG/M
3300021375Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO132EnvironmentalOpen in IMG/M
3300021378Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO131EnvironmentalOpen in IMG/M
3300021443Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 500m 12015EnvironmentalOpen in IMG/M
3300021957Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18DEnvironmentalOpen in IMG/M
3300022074Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 56 SPOT_SRF_2014-09-10 (v2)EnvironmentalOpen in IMG/M
3300024247Seawater microbial communities from Monterey Bay, California, United States - 36D_rEnvironmentalOpen in IMG/M
3300024264 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_124_October2016_10_MGEnvironmentalOpen in IMG/M
3300024322Seawater microbial communities from Monterey Bay, California, United States - 68DEnvironmentalOpen in IMG/M
3300025042Marine viral communities from the Pacific Ocean - LP-47 (SPAdes)EnvironmentalOpen in IMG/M
3300025047Marine viral communities from the Pacific Ocean - LP-42 (SPAdes)EnvironmentalOpen in IMG/M
3300025049Marine viral communities from the Pacific Ocean - LP-55 (SPAdes)EnvironmentalOpen in IMG/M
3300025102Marine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025108Marine viral communities from the Subarctic Pacific Ocean - 17_ETSP_OMZ_AT15314 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025112Marine viral communities from the Pacific Ocean - ETNP_2_130 (SPAdes)EnvironmentalOpen in IMG/M
3300025122Marine viral communities from the Pacific Ocean - ETNP_2_300 (SPAdes)EnvironmentalOpen in IMG/M
3300025125Marine viral communities from the Pacific Ocean - ETNP_2_1000 (SPAdes)EnvironmentalOpen in IMG/M
3300025138Marine viral communities from the Pacific Ocean - LP-40 (SPAdes)EnvironmentalOpen in IMG/M
3300025168Marine viral communities from the Pacific Ocean - LP-53 (SPAdes)EnvironmentalOpen in IMG/M
3300025251Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_906 (SPAdes)EnvironmentalOpen in IMG/M
3300025267Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_Geostar (SPAdes)EnvironmentalOpen in IMG/M
3300025277Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s16 (SPAdes)EnvironmentalOpen in IMG/M
3300025282Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_M9 (SPAdes)EnvironmentalOpen in IMG/M
3300025286Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_215 (SPAdes)EnvironmentalOpen in IMG/M
3300025301Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_908 (SPAdes)EnvironmentalOpen in IMG/M
3300025305Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_b05 (SPAdes)EnvironmentalOpen in IMG/M
3300025483Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - Saanich Inlet SI074_LV_120m_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025767Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_105LU_22_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025830Pelagic marine microbial communities from North Sea - COGITO_mtgs_110407 (SPAdes)EnvironmentalOpen in IMG/M
3300025870Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S3LV_125m_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025897Pelagic Microbial community sample from North Sea - COGITO 998_met_05 (SPAdes)EnvironmentalOpen in IMG/M
3300027188Estuarine microbial communities from the Columbia River estuary - Ebb tide non-ETM metaG S.709 (SPAdes)EnvironmentalOpen in IMG/M
3300027278Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.703 (SPAdes)EnvironmentalOpen in IMG/M
3300027753Estuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.741 (SPAdes)EnvironmentalOpen in IMG/M
3300027757Estuarine microbial communities from the Columbia River estuary - Ebb tide ETM metaG S.759 (SPAdes)EnvironmentalOpen in IMG/M
3300027771Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG006-DNA (SPAdes)EnvironmentalOpen in IMG/M
3300027859Marine eukaryotic phytoplankton communities from Atlantic Ocean - South Atlantic ANT15 Metagenome (SPAdes)EnvironmentalOpen in IMG/M
3300028022Seawater viral communities from deep brine pools at the bottom of the Mediterranean Sea - LS1 750mEnvironmentalOpen in IMG/M
3300028194Marine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2011_P26_10mEnvironmentalOpen in IMG/M
3300028397Seawater microbial communities from Monterey Bay, California, United States - 50DEnvironmentalOpen in IMG/M
3300028418Seawater microbial communities from Monterey Bay, California, United States - 16DEnvironmentalOpen in IMG/M
3300031757Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 200m 32315EnvironmentalOpen in IMG/M
3300032073Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 40m 3416EnvironmentalOpen in IMG/M
3300032360Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 500m 34915EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
DelMOWin2010_1013109923300000117MarineVDLTQSGAGAHTANMVFTTDDYTVDVNQLGSTNQTYTATFDCSANCNKTITITQQ*
JGI20151J14362_1021302733300001346Pelagic MarineFYTTGYEVDVTQSGATNQSYTATFNCTSECTKTITITQQ*
JGI24006J15134_1001133213300001450MarineTANMKFYTDDYNVDVTQAGSTNQAYSATFNCTSSCTKTISITQQ*
JGI24006J15134_1013962013300001450MarineAHTANMKFYTDNYDVDVTQSGSTNQAYSATFNCSSNCTKTISITQQ*
JGI24005J15628_1005175713300001589MarineGSHSANMKFYTDDYNVNVIQRGVNNQAYSVTFDCSANCTKTISITQE*
JGI24520J20079_101131613300001735MarineGSHTSNMKFYTNDYDVTVVQKGWSNKSYTATFNCTSNCDKTITIMQEN*
JGI25131J35506_100090643300002511MarineNGSHTSLIKFYTDDYDVTVVQKGTTNKSYSATFNCVSNCDKTISITQQN*
Ga0098038_119331213300006735MarineDVDLTQSGAGAHTALMKFYTDNYDVDVTQLGSTAQSYSATFNCTSNCTKTVSITQQ*
Ga0098033_100828483300006736MarineSHTSNIKFYTDDYDVTVVQKGTTNKSYSATFNCSSNCDKTITIMQEN*
Ga0098033_108637213300006736MarineKFYTDDYDVTVVQKGATNKSYTATFNCTSNCTKTISITQSD*
Ga0098033_117827613300006736MarineYDVTVVQKGTTNKSYSATFNCTSSCDKTITIMQEN*
Ga0098042_103212113300006749MarineDDYNLNVTQSGATNQSYTATFNCTQNCAKTVTITQE*
Ga0098039_100381293300006753MarineGSHTSNIKFYTDDYDVTVVQKGTTNKSYSATFNCSSNCTKTISIMQEN*
Ga0098039_101250213300006753MarineNGVHGSNMKFYVDDYDVTVVQKGATNKSYVATFNCTSNCNKVITITQSD*
Ga0098055_112673833300006793MarineFYSTGYDVDVTQLGATNQSYTATFNCTSSCTKTISITQQ*
Ga0070750_1043396713300006916AqueousDDYTVDVNQLGSTNQTYTATFDCSANCNKTITITQQ*
Ga0098041_108538013300006928MarineQSGAGAHTALMKFYTDNYDVDVTQLGSTAQSYSATFNCTSNCTKTVSITQQ*
Ga0114898_111710713300008216Deep OceanIKFYTDDYDVTVVQKGTTNKSYSATFNCSSNCNKTISIMQEN*
Ga0114899_104874823300008217Deep OceanAHTSNIKFYTDDYNVNVIQKGATNQAYSVTFNCVSNCTKTISITQE*
Ga0114910_119374313300008220Deep OceanDVTVVQKGTTNKSYSATFNCSSNCNKTITIMQEN*
Ga0114916_104389813300008221Deep OceanVLTQQGNGSHSANMKFYTDDYNVNVIQRGVNNQAYSVTFNCISNCTKTISITQE*
Ga0102813_115870733300009003EstuarineDLTQYGTGAHVADMKFYTTGYNVDVTQLGATNQSYTATFNCTADCTKTISITQQ*
Ga0102814_1058166213300009079EstuarineDNTNVDLTQSGAGAHTANMVFTTDNYTVDVDQLGSSNQSYTATFDCSANCTKTITITQQ*
Ga0102815_1034153633300009080EstuarineTTGYNVDVTQLGATNQSYTATFNCTADCTKTISITQQ*
Ga0114902_102518913300009413Deep OceanSNMKFYTDDYDVTVVQKGATNKSYVATFNCNTNCTKTISITQSD*
Ga0114909_107055323300009414Deep OceanSHTSNMKFYTDDYDVTVVQKGTTNKSYSATFNCYSNCTKTISIMQEN*
Ga0115554_112751033300009472Pelagic MarineGAGAHVANMQFYTTGYEVDVTQSGATNQSYTATFNCTSECTKTITITQQ*
Ga0115555_127948113300009476Pelagic MarineNVTQLGSTNQSYAATFNCTESCTKTITITQQ*NLK*
Ga0115011_1138178113300009593MarineTQSGAGAHTANMKFYTDDYTVDVDQLGSTNQTYTATFNCTQNCTKTITITQQ*
Ga0114901_114668523300009604Deep OceanDYDVTVVQKGTTNKSYSATFNCSSNCNKTITIMQEN*
Ga0114906_102261843300009605Deep OceanMKFYTDDYDVTVVQKGATNKSYVATFNCNTNCNKTITIMQQD*
Ga0105236_102342223300009619Marine OceanicGNGSHTSNMKFYTDDYDVTVVQKGTTNKSYSATFNCYSNCTKTISIMQEN*
Ga0114933_1018892033300009703Deep SubsurfaceFYNDADNTDVDLTQSGSGAHTANMKFYTDNYNVDVTQLGSNNQSYSATFNCTSNCTKTVTITQQ*
Ga0105235_12841913300009791Marine OceanicIKFYTDDYDVTVVQKGATNKSYSATFNCTSNCDKTISITQSD*
Ga0098043_109542743300010148MarineYTDDYNLNVTQSGATNQSYTATFNCTQNCTKTVTITQE*
Ga0098043_115972733300010148MarineYNLNVTQSGATNQSYTATFNCTSNCTKTITITQE*
Ga0114934_1006617213300011013Deep SubsurfaceMKFYTDDYDVTVVQKGTTNKSYSATFNCSSNCTKTITITQQN*
Ga0160423_1115267223300012920Surface SeawaterMKFYTDDYNLNVTQSGATNQSYTATFNCTSNCTKTITITQE*
Ga0163180_1040861913300012952SeawaterMKFYTNNYDVDVTQSGATNQSYSATFNCSSNCNKTITITQQ*
Ga0163111_1052745413300012954Surface SeawaterTANMKFYTDNYDVDVTQSGANNQSYSATFNCTSNCTKTVSITQQ*
Ga0163111_1214328713300012954Surface SeawaterDLTQSGAGAHTALMKIYTDNYDLDVTQLGSTAQSYSATFNCTSNCTKTVSITQQ*
Ga0181377_101597413300017706MarineDLTQYGAGAHVANMKFYTTGYDVDVTQSGATNQSYTATFNCTSECTKTITITQQ
Ga0181387_104066713300017709SeawaterHVANMKFYTTGYDVGVTQSGATNQSYTATFNCTSECTKTITITQQ
Ga0181387_105089733300017709SeawaterGTGAHVANMKFYTTGYNVDVTQLGATNQTYTATFNCTQNCTKTISITQQ
Ga0181412_106096333300017714SeawaterQYGAGAHVANMKFYTTGYDVGVTQSGATNQSYTATFNCTSECTKTITITQQ
Ga0181404_106812713300017717SeawaterTDDYNVNVIQKGVNNQAYSVTFNCVSNCTKTISITQQ
Ga0181418_117828123300017740SeawaterGSHSANMKFYTDDYNVNVIQKGVNNQAYSVTFDCVSNCTKTISITQQ
Ga0181402_106816313300017743SeawaterFYNSDNEVDLTQYGAGAHVANMKFYTTGYDVGVTQSGATNQSYTATFNCTSECTKTITITQQ
Ga0181402_112897833300017743SeawaterTQTGSGAHTANMKFYTDDYDVDVTQSGANNQAYSATFNCTSECTKTISITQQ
Ga0181402_115221433300017743SeawaterFYTTGYDVDVTQLGATNQSYTATFNCTSSCTKTITITQQ
Ga0187219_109876733300017751SeawaterDADNTDVDLTQTGSGAHTANMKFYTDDYDVDVTQSGANNQAYSATFNCTSECTKTISITQ
Ga0181408_106395523300017760SeawaterYNSDNEVDLTQYGTGAHVANMKFYTTGYDVDVTQLGATNQTYTATFNCTADCTKTISITQ
Ga0181422_118198013300017762SeawaterTGYDVDVTQLGATNQTYTATFNCTADCTKTISITQQ
Ga0181413_107447013300017765SeawaterDDYTVDVDQLGSTNQTYTATFDCSANCNKTITITQQ
Ga0181406_103236113300017767SeawaterIFFYNSDNEVDLTQYGTGAHVANMKFYTTGYDVDVTQLGATNQTYTATFNCTADCTKTISITQQ
Ga0187220_105803513300017768SeawaterKFYTTGYDVNVTQLGATNQTYTATFNCTADCTKTISITQQ
Ga0181432_119459513300017775SeawaterLKFYTDDYDVTVVQKGTTNKSYSATFNCSSNCNKTITIMQEN
Ga0181379_131010313300017783SeawaterTQYGTGAHVANMKFYTTGYDVDVTQLGATNQTYTATFNCTADCTKTISITQQ
Ga0181424_1045755823300017786SeawaterVDLTQYGTGAHVADMKFYTTGYNVDVTQLGATNQTYTATFNCTADCTKTISITQQ
Ga0211521_1018113723300020428MarineQYGTGAHTANMKFYTNNYNVDVTQSGATNQSYSATFNCSSNCNKTITITQQ
Ga0211576_1033974123300020438MarineMKFYTDDYNVDVTQSGATNQSYSATFNCTNNCTKTISITQQ
Ga0211475_1000087313300020468MarineYSADNDVDLTQYGTGAHVANMKFYTTDYNVDVTQLGSTNQTYTATFNCSQNCTKTISITQ
Ga0213869_1045862413300021375SeawaterTDDYDVDVTQSGATNQSYSATFNCTSSCTKTISITQQ
Ga0213861_1012526313300021378SeawaterANMVFTTDDYTVDVDQLGSSNQSYTATFDCSANCNKTITITQQ
Ga0206681_1035429123300021443SeawaterIKFYTDDYDVTVVQKGTTNKSYSATFNCSSNCDKTITITQQN
Ga0222717_1040665813300021957Estuarine WaterYGTGAHVADMKFYTTGYNVDVTQLGATNQSYTATFNCTADCTKTISITQQ
Ga0224906_114157833300022074SeawaterMKFYTDDYNLNVTQSGTNNQSYTATFNCTQNCTKTLTITQE
Ga0228675_105568723300024247SeawaterTQYGTGAHVANMKFYTTGYDVDVTQLGATNQSYTATFNCTADCTKTISITQQ
(restricted) Ga0233444_1013264813300024264SeawaterTGYDVDVTQLGATNQSYTATFNCTADCTKTISITQQ
Ga0228656_104682113300024322SeawaterANMKFYTTGYDVDVTQLGATNQSYTATFNCTADCTKTISITQQ
Ga0207889_101403023300025042MarineTDDYDVTVVQKGWTNKSYTATFNCTSNCNKTITITQQN
Ga0207897_10926413300025047MarineTSNMKFYTDDYDVTVVQKGTTNKSYTATFNCTSNCNKTITITQQN
Ga0207898_102442423300025049MarineHTSLIKFYTDDYDVTVVQKGATNKSYSATFNCTSNCDKTISITQSD
Ga0208666_111143413300025102MarineDVDLTQSGAGAHTALMKFYTDNYDVDVTQLGSTAQSYSATFNCTSNCTKTVSITQQ
Ga0208666_113853113300025102MarineNSDNEVDLTQYGTGAHVANMKFYTTGYNVDVTQLGATNQTYTATFNCTQNCTKTISITQQ
Ga0208793_109532013300025108MarineDDYNLNVTQSGSNNQAYTATFNCTQNCTKTITITQE
Ga0209349_105883013300025112MarineDDYDVTVVQKGTTNKSYSATFNCSSNCTKTISIMQEN
Ga0209434_105359423300025122MarineFYTDDYDVTVVQKGTTNKSYSATFNCSSNCTKTISIMQEN
Ga0209434_108436013300025122MarineKFYTDDYDVTVVQKGTTNKSYSATFNCTSSCDKTITIMQEN
Ga0209644_105643013300025125MarineDDYDVTVVQKGTTNKSYSATFNCSSNCDKTITIMQEN
Ga0209644_111150713300025125MarineTDDYDVTVVQKGTTNKAYSATFNCVSNCDKTISITQQN
Ga0209644_112523423300025125MarineDYDVTVVQKGTTNKSYTATFNCTSNCDKTITITQQN
Ga0209634_101118613300025138MarineAGAHTANMVFTTDDYTVDVNQLGSTNQTYTATFDCSANCNKTITITQQ
Ga0209634_120778813300025138MarineNMKFYTDDYTVNVTQSGATNQAYTAVFNCNTDCTKTLTITQQ
Ga0209337_101738613300025168MarineDDYTVNVTQSGATNQAYTAVFNCNTDCTKTLTITQQ
Ga0208182_104118323300025251Deep OceanGSHTSNIKFYTDDYDVTVVQKGTTNKSYSATFNCYSNCTKTISIMQEN
Ga0208182_104632323300025251Deep OceanMKFYTDDYDVTVVQKGTTNKSYSATFNCTGSCNKTISIMQEN
Ga0208179_102990513300025267Deep OceanDDYDVTVVQKGTTNKSYSATFNCSSNCNKTITIMQEN
Ga0208179_109160313300025267Deep OceanYDVTVVQKGTTNKSYSATFNCSSNCNKTITIMQEN
Ga0208180_105003723300025277Deep OceanGSHTSNMKFYTDDYDVTVVQKGTTNKSYSATFNCTGSCNKTISIMQEN
Ga0208030_102518413300025282Deep OceanHTSNMKFYTDDYDVTVVQKGTTNKSYTATFNCTSNCNKTITITQQN
Ga0208315_111274023300025286Deep OceanYDVTVVQKGTTNKSYTATFNCTSNCDKTITITQQN
Ga0208315_113202123300025286Deep OceanSHTSNMKFYTDDYDVTVVQKGTTNKSYSATFNCTGSCNKTISIMQEN
Ga0208450_101607913300025301Deep OceanTQQGNGAHGSNMKFYTDDYDVTVIQKGATNKSYVATFNCTSNCTKTISITQSD
Ga0208450_103145513300025301Deep OceanFYTDDYDVTVVQKGTTNKSYSATFNCYSNCTKTISIMQEN
Ga0208684_103894323300025305Deep OceanTSNIKFYTDDYDVTVVQKGTTNKSYSATFNCYSNCTKTISIMQEN
Ga0209557_101928443300025483MarineAHVADMKFYTTGYNVDVTQLGATNQSYTATFNCTADCTKTISITQQ
Ga0209137_110647033300025767MarineFYTTGYNVDVTQLGATNQSYTATFNCTADCTKTISITQQ
Ga0209832_115382013300025830Pelagic MarineNVTQLGSTNQSYAATFNCTESCTKTITITQQXNLK
Ga0209666_102978173300025870MarineLTQYGTGAHVADMKFYTTGYNVDVTQLGATNQSYTATFNCTADCTKTISITQQ
Ga0209425_1049354523300025897Pelagic MarineDNEVDLTQYGTGAHVANMTFYTTGYDVDVTQLGATNQTYTATFNCTADCTKTISITQQ
Ga0208921_103989823300027188EstuarineNSDNEVDLTQYGTGAHVADMKFYTTGYNVDVTQLGATNQSYTATFNCTADCTKTISITQQ
Ga0208439_100683533300027278EstuarineGTGAHVADMKFYTTGYNVDVTQLGATNQSYTATFNCTADCTKTISITQQ
Ga0208305_1006037113300027753EstuarineKFYTTGYNVDVTQLGATNQSYTATFNCTADCTKTISITQQ
Ga0208671_1008009933300027757EstuarineTTGYNVDVTQLGATNQSYTATFNCTADCTKTISITQQ
Ga0209279_1010934823300027771MarineQGNGSHTANMKFYTDDYNVNVIQKGVNNQAYSVTFSCVSNCTKTISITQE
Ga0209503_1033334713300027859MarineTVVNLTQYGTGAHAANMKFYTDDYNLNVTQSGANNQSYTATFNCTSNCTKTITITQE
Ga0256382_115109713300028022SeawaterTDDYDVTVVQKGTTNKSYSATFNCYSNCTKTISIMQEN
Ga0257106_104177413300028194MarineADADNSTVNLTQYGSGAHAANMKFYTDDYTVNVTQSGATNQAYTAVFNCNTDCTKTLTITQQ
Ga0228639_105714443300028397SeawaterTDVDLTQTGSGAHTANMKFYTDDYDVDVTQSGANNQAYSATFNCTSECTKTISITQQ
Ga0228615_107598723300028418SeawaterDLTQYGTGAHVANMKFYTTGYDVDVTQLGATNQSYTATFNCTADCTKTISITQQ
Ga0315328_1087228513300031757SeawaterFYTDDYDVTVVQKGTTNKSYSATFNCSSNCNKTITIMQEN
Ga0315315_1035641343300032073SeawaterTGSGAHTANMKFYTDDYDVDVTQSGANNQAYSATFNCTSECTKTISITQQ
Ga0315315_1119373813300032073SeawaterAHVANMKFYTTGYNVDVTQLGATNQTYTATFNCTQNCTKTISITQQ
Ga0315334_1093448723300032360SeawaterDYDVTVVQKGTTNKSYSATFNCSSNCTKTITITQEN


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