Metagenome / Metatranscriptome Family F080607

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F080607
Family Type	Metagenome / Metatranscriptome
Number of Sequences	115
Average Sequence Length	67 residues
Representative Sequence	MAKLTRERKVKEKRELKEEKKAAAAAAKAAGTYSYDGEPVEAPVGNTTDPIDPTDEALAADSTVAASSEDR
Number of Associated Samples	102
Number of Associated Scaffolds	115

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	47.79 %
% of genes near scaffold ends (potentially truncated)	25.22 %
% of genes from short scaffolds (< 2000 bps)	84.35 %
Associated GOLD sequencing projects	100
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.27

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (72.174 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (33.043 % of family members)
Environment Ontology (ENVO)	Unclassified (27.826 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (62.609 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 25.25% β-sheet: 0.00% Coil/Unstructured: 74.75%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.27
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.27
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 115 Family Scaffolds
PF02518	HATPase_c	53.04
PF00144	Beta-lactamase	6.09
PF00486	Trans_reg_C	4.35
PF14417	MEDS	4.35
PF01408	GFO_IDH_MocA	3.48
PF07883	Cupin_2	2.61
PF07690	MFS_1	2.61
PF00089	Trypsin	1.74
PF01243	Putative_PNPOx	1.74
PF01636	APH	1.74
PF00005	ABC_tran	1.74
PF13185	GAF_2	0.87
PF00370	FGGY_N	0.87
PF07366	SnoaL	0.87

COG ID	Name	Functional Category	% Frequency in 115 Family Scaffolds
COG1680	CubicO group peptidase, beta-lactamase class C family	Defense mechanisms [V]	6.09
COG1686	D-alanyl-D-alanine carboxypeptidase	Cell wall/membrane/envelope biogenesis [M]	6.09
COG2367	Beta-lactamase class A	Defense mechanisms [V]	6.09

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	72.17 %
Unclassified	root	N/A	27.83 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	72.17 %
Unclassified	root	N/A	27.83 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	72.17 %
Unclassified	root	N/A	27.83 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	51.30 %
Unclassified	root	N/A	27.83 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	46.96 %
Unclassified	root	N/A	27.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	27.83 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	12.17 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	7.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	27.83 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	8.70 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	5.22 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	1.74 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	27.83 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	8.70 %
Solirubrobacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae	1.74 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	1.74 %
unclassified Solirubrobacterales	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales	0.87 %
Patulibacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Patulibacteraceae	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	27.83 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	8.70 %
Herbihabitans	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Herbihabitans	1.74 %
Solirubrobacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter	1.74 %
Solirubrobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	0.87 %
Patulibacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Patulibacteraceae → Patulibacter	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	27.83 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	8.70 %
Herbihabitans rhizosphaerae	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Herbihabitans → Herbihabitans rhizosphaerae	1.74 %
Solirubrobacter soli	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → Solirubrobacter soli	1.74 %
Solirubrobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	0.87 %
Patulibacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Patulibacteraceae → Patulibacter	0.87 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000880\|AL20A1W_1052753	Not Available	956	Open in IMG/M
3300000880\|AL20A1W_1115401	Not Available	1618	Open in IMG/M
3300000956\|JGI10216J12902_109047225	All Organisms → cellular organisms → Bacteria	1335	Open in IMG/M
3300001538\|A10PFW1_10423425	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1098	Open in IMG/M
3300002557\|JGI25381J37097_1043895	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	747	Open in IMG/M
3300004479\|Ga0062595_102476431	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Patulibacteraceae → Patulibacter	517	Open in IMG/M
3300005167\|Ga0066672_10442500	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	849	Open in IMG/M
3300005171\|Ga0066677_10147071	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1288	Open in IMG/M
3300005181\|Ga0066678_10013857	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4038	Open in IMG/M
3300005440\|Ga0070705_101662643	Not Available	539	Open in IMG/M
3300005445\|Ga0070708_100063272	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3311	Open in IMG/M
3300005456\|Ga0070678_101648527	Not Available	603	Open in IMG/M
3300005536\|Ga0070697_102116535	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	504	Open in IMG/M
3300005544\|Ga0070686_100672525	Not Available	823	Open in IMG/M
3300005549\|Ga0070704_100995737	All Organisms → cellular organisms → Bacteria	758	Open in IMG/M
3300005557\|Ga0066704_10176951	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1438	Open in IMG/M
3300006034\|Ga0066656_10279738	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1075	Open in IMG/M
3300006046\|Ga0066652_100705986	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	960	Open in IMG/M
3300007258\|Ga0099793_10603856	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	550	Open in IMG/M
3300009012\|Ga0066710_104426600	Not Available	525	Open in IMG/M
3300009038\|Ga0099829_10027521	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	4007	Open in IMG/M
3300009090\|Ga0099827_10001902	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	11213	Open in IMG/M
3300009137\|Ga0066709_100041249	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	5076	Open in IMG/M
3300010039\|Ga0126309_10180798	All Organisms → cellular organisms → Bacteria	1154	Open in IMG/M
3300010147\|Ga0126319_1008741	All Organisms → cellular organisms → Bacteria	1295	Open in IMG/M
3300010147\|Ga0126319_1052115	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	512	Open in IMG/M
3300010303\|Ga0134082_10195376	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Herbihabitans → Herbihabitans rhizosphaerae	827	Open in IMG/M
3300010326\|Ga0134065_10264886	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	646	Open in IMG/M
3300010336\|Ga0134071_10621950	Not Available	566	Open in IMG/M
3300010371\|Ga0134125_10791141	Not Available	1044	Open in IMG/M
3300010371\|Ga0134125_12595786	Not Available	551	Open in IMG/M
3300010396\|Ga0134126_12284954	Not Available	589	Open in IMG/M
3300010399\|Ga0134127_13516198	Not Available	513	Open in IMG/M
3300010403\|Ga0134123_12931713	All Organisms → cellular organisms → Bacteria	546	Open in IMG/M
3300011003\|Ga0138514_100049388	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	847	Open in IMG/M
3300011270\|Ga0137391_10401696	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1171	Open in IMG/M
3300011991\|Ga0120153_1070888	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	597	Open in IMG/M
3300011994\|Ga0120157_1035972	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1119	Open in IMG/M
3300012014\|Ga0120159_1083825	All Organisms → cellular organisms → Bacteria → Terrabacteria group	934	Open in IMG/M
3300012199\|Ga0137383_10539831	All Organisms → cellular organisms → Bacteria	853	Open in IMG/M
3300012199\|Ga0137383_10581185	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	820	Open in IMG/M
3300012200\|Ga0137382_10835263	Not Available	664	Open in IMG/M
3300012203\|Ga0137399_10055256	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2905	Open in IMG/M
3300012204\|Ga0137374_10121180	All Organisms → cellular organisms → Bacteria	2406	Open in IMG/M
3300012209\|Ga0137379_10495068	Not Available	1130	Open in IMG/M
3300012209\|Ga0137379_11677617	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	532	Open in IMG/M
3300012211\|Ga0137377_11801011	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	532	Open in IMG/M
3300012353\|Ga0137367_10914314	Not Available	603	Open in IMG/M
3300012356\|Ga0137371_10331485	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1184	Open in IMG/M
3300012361\|Ga0137360_10050951	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2982	Open in IMG/M
3300012361\|Ga0137360_10213066	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1570	Open in IMG/M
3300012685\|Ga0137397_10193191	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1513	Open in IMG/M
3300012907\|Ga0157283_10095897	All Organisms → cellular organisms → Bacteria	785	Open in IMG/M
3300012925\|Ga0137419_11788857	Not Available	526	Open in IMG/M
3300012951\|Ga0164300_10302961	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	837	Open in IMG/M
3300012951\|Ga0164300_10441355	All Organisms → cellular organisms → Bacteria	727	Open in IMG/M
3300012957\|Ga0164303_10635979	Not Available	709	Open in IMG/M
3300012958\|Ga0164299_10228686	Not Available	1096	Open in IMG/M
3300012984\|Ga0164309_10489880	Not Available	938	Open in IMG/M
3300012985\|Ga0164308_10626334	All Organisms → cellular organisms → Bacteria	918	Open in IMG/M
3300012986\|Ga0164304_10617280	All Organisms → cellular organisms → Bacteria	812	Open in IMG/M
3300012986\|Ga0164304_10715124	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	763	Open in IMG/M
3300013763\|Ga0120179_1037526	All Organisms → cellular organisms → Bacteria	1135	Open in IMG/M
3300013764\|Ga0120111_1033404	Not Available	1361	Open in IMG/M
3300013768\|Ga0120155_1085178	Not Available	894	Open in IMG/M
3300013770\|Ga0120123_1088721	All Organisms → cellular organisms → Bacteria	696	Open in IMG/M
3300013772\|Ga0120158_10031185	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	4067	Open in IMG/M
3300015209\|Ga0167629_1200082	All Organisms → cellular organisms → Bacteria	504	Open in IMG/M
3300017654\|Ga0134069_1084349	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1025	Open in IMG/M
3300018027\|Ga0184605_10000481	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	11861	Open in IMG/M
3300018051\|Ga0184620_10045345	All Organisms → cellular organisms → Bacteria	1217	Open in IMG/M
3300018061\|Ga0184619_10143312	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1088	Open in IMG/M
3300018066\|Ga0184617_1067665	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	944	Open in IMG/M
3300018433\|Ga0066667_10215168	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1426	Open in IMG/M
3300019255\|Ga0184643_1358783	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	739	Open in IMG/M
3300019885\|Ga0193747_1068260	All Organisms → cellular organisms → Bacteria	878	Open in IMG/M
3300019886\|Ga0193727_1160182	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	601	Open in IMG/M
3300020022\|Ga0193733_1015814	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → Solirubrobacter soli	2128	Open in IMG/M
3300021080\|Ga0210382_10004096	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	4683	Open in IMG/M
3300022756\|Ga0222622_10054408	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → Solirubrobacter soli	2279	Open in IMG/M
3300023058\|Ga0193714_1041869	All Organisms → cellular organisms → Bacteria	666	Open in IMG/M
3300025931\|Ga0207644_10561312	Not Available	946	Open in IMG/M
3300025939\|Ga0207665_11179209	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	611	Open in IMG/M
3300026310\|Ga0209239_1160540	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	877	Open in IMG/M
3300026318\|Ga0209471_1236511	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	646	Open in IMG/M
3300026528\|Ga0209378_1129584	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1063	Open in IMG/M
3300026929\|Ga0207461_1005989	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	639	Open in IMG/M
3300027846\|Ga0209180_10220817	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Herbihabitans → Herbihabitans rhizosphaerae	1092	Open in IMG/M
3300027882\|Ga0209590_10573056	Not Available	727	Open in IMG/M
3300028705\|Ga0307276_10000400	All Organisms → cellular organisms → Bacteria	5372	Open in IMG/M
3300028710\|Ga0307322_10044202	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1077	Open in IMG/M
3300028711\|Ga0307293_10045780	Not Available	1353	Open in IMG/M
3300028714\|Ga0307309_10012884	Not Available	1530	Open in IMG/M
3300028716\|Ga0307311_10126697	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	726	Open in IMG/M
3300028719\|Ga0307301_10057618	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1201	Open in IMG/M
3300028720\|Ga0307317_10037885	Not Available	1521	Open in IMG/M
3300028744\|Ga0307318_10305613	All Organisms → cellular organisms → Bacteria	558	Open in IMG/M
3300028778\|Ga0307288_10403375	All Organisms → cellular organisms → Bacteria	557	Open in IMG/M
3300028799\|Ga0307284_10015318	Not Available	2373	Open in IMG/M
3300028802\|Ga0307503_10180031	All Organisms → cellular organisms → Bacteria	985	Open in IMG/M
3300028803\|Ga0307281_10044985	All Organisms → cellular organisms → Bacteria	1372	Open in IMG/M
3300028807\|Ga0307305_10102722	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1321	Open in IMG/M
3300028807\|Ga0307305_10155727	Not Available	1054	Open in IMG/M
3300028811\|Ga0307292_10384187	All Organisms → cellular organisms → Bacteria → Terrabacteria group	595	Open in IMG/M
3300028814\|Ga0307302_10055165	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1852	Open in IMG/M
3300028819\|Ga0307296_10301161	All Organisms → cellular organisms → Bacteria → Terrabacteria group	874	Open in IMG/M
3300028819\|Ga0307296_10839081	Not Available	501	Open in IMG/M
3300028828\|Ga0307312_10013163	All Organisms → cellular organisms → Bacteria	4606	Open in IMG/M
3300028828\|Ga0307312_10221302	All Organisms → cellular organisms → Bacteria	1219	Open in IMG/M
3300028828\|Ga0307312_11202371	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	501	Open in IMG/M
3300028878\|Ga0307278_10084042	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1433	Open in IMG/M
3300028885\|Ga0307304_10133889	Not Available	1020	Open in IMG/M
3300031091\|Ga0308201_10209096	Not Available	650	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	98.26%
Host-Associated	Host-Associated	1.74%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	89.57%
Aquatic	Environmental → Aquatic	8.70%
Plants	Host-Associated → Plants	1.74%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	88.70%
Sediment	Environmental → Aquatic → Sediment	5.22%
Freshwater	Environmental → Aquatic → Freshwater	3.48%
Agricultural Field	Environmental → Terrestrial → Agricultural Field	0.87%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.87%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.87%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	82.61%
Loam	Environmental → Terrestrial → Soil → Loam	6.09%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	5.22%
Sediment	Environmental → Aquatic → Freshwater → Sediment	1.74%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	1.74%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	0.87%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.87%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.87%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	60.00%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	11.30%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	9.57%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	5.22%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.22%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	1.74%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	1.74%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.74%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.87%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	0.87%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.87%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.87%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	33.04%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	17.39%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	9.57%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	6.96%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	4.35%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	4.35%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	4.35%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.35%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	3.48%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	1.74%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	1.74%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.74%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.87%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.87%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	0.87%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.87%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.87%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	0.87%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.87%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.87%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000880	Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A35-65cm-20A)- 1 week illumina	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300001538	Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A10-PF 4A)- 1 week illumina	Environmental	Open in IMG/M
3300002557	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_20cm	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental	Open in IMG/M
3300005171	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126	Environmental	Open in IMG/M
3300005181	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127	Environmental	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005544	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG	Environmental	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005557	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153	Environmental	Open in IMG/M
3300006034	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105	Environmental	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300010039	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot56	Environmental	Open in IMG/M
3300010147	Soil microbial communities from California, USA to study soil gas exchange rates - BB-CA-RED metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010303	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09182015	Environmental	Open in IMG/M
3300010326	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010336	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09082015	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300011003	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t9i015	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300011991	Permafrost microbial communities from Nunavut, Canada - A34_65cm_12M	Environmental	Open in IMG/M
3300011994	Permafrost microbial communities from Nunavut, Canada - A7_65cm_12M	Environmental	Open in IMG/M
3300012014	Permafrost microbial communities from Nunavut, Canada - A10_80cm_6M	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012353	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_80_16 metaG	Environmental	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012907	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S044-104R-1	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300013763	Permafrost microbial communities from Nunavut, Canada - A15_65cm_0M	Environmental	Open in IMG/M
3300013764	Permafrost microbial communities from Nunavut, Canada - A28_35cm_6M	Environmental	Open in IMG/M
3300013768	Permafrost microbial communities from Nunavut, Canada - A35_65cm_0M	Environmental	Open in IMG/M
3300013770	Permafrost microbial communities from Nunavut, Canada - A15_5cm_18M	Environmental	Open in IMG/M
3300013772	Permafrost microbial communities from Nunavut, Canada - A10_80_0.25M	Environmental	Open in IMG/M
3300015209	Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G3B, Proglacial river margin, by glacier terminus)	Environmental	Open in IMG/M
3300017654	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300018027	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_coex	Environmental	Open in IMG/M
3300018051	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_b1	Environmental	Open in IMG/M
3300018061	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_b1	Environmental	Open in IMG/M
3300018066	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_b1	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300019255	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019885	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1m2	Environmental	Open in IMG/M
3300019886	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c2	Environmental	Open in IMG/M
3300020022	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1s2	Environmental	Open in IMG/M
3300021080	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_coex redo	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300023058	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2m1	Environmental	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026310	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_2_20cm (SPAdes)	Environmental	Open in IMG/M
3300026318	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128 (SPAdes)	Environmental	Open in IMG/M
3300026528	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156 (SPAdes)	Environmental	Open in IMG/M
3300026929	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G05.2A3w-12 (SPAdes)	Environmental	Open in IMG/M
3300027846	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300028705	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_115	Environmental	Open in IMG/M
3300028710	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_380	Environmental	Open in IMG/M
3300028711	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_150	Environmental	Open in IMG/M
3300028714	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_196	Environmental	Open in IMG/M
3300028716	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_198	Environmental	Open in IMG/M
3300028719	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_182	Environmental	Open in IMG/M
3300028720	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_357	Environmental	Open in IMG/M
3300028744	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_367	Environmental	Open in IMG/M
3300028778	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_142	Environmental	Open in IMG/M
3300028799	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_123	Environmental	Open in IMG/M
3300028802	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 17_S	Environmental	Open in IMG/M
3300028803	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_120	Environmental	Open in IMG/M
3300028807	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_186	Environmental	Open in IMG/M
3300028811	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_149	Environmental	Open in IMG/M
3300028814	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_183	Environmental	Open in IMG/M
3300028819	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_153	Environmental	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300028876	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_140	Environmental	Open in IMG/M
3300028878	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_117	Environmental	Open in IMG/M
3300028885	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_185	Environmental	Open in IMG/M
3300031091	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_355 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
AL20A1W_10527532	3300000880	Permafrost	MAKLTRERKVKEKRELKEEKKAAAAAAKAAGTYSYDGEPVEPSPENTTDPTDEALVADATVAASSEDR*
AL20A1W_11154012	3300000880	Permafrost	MAKLTRERKVKEKRELKEEKKAAAAAAKAAGTYSYDGEPVEAPLGNMTDPIDPTDEALTADSTVAASSEDR*
JGI10216J12902_1090472252	3300000956	Soil	MAKLTRERKVKEKRELKEEKKAAAAAAKAAGTYSYDGEPVEAPVRTTPEPIDSDDEALVADSTTAASSEDR*
A10PFW1_104234252	3300001538	Permafrost	MAKLTRERKVKEKRELKEEKKAAAAAAKAAGTYSYDGEPVEAPVLNTSDSTDEEPAADPVIAASGDDR*
JGI25381J37097_10438952	3300002557	Grasslands Soil	MAKLTRERKVKEKRELKEEKKAAAAAAKAAGTYSYDGEPVEAPASNTIDSTDEAVGDDSAVAVPGDDR*
Ga0062595_1024764312	3300004479	Soil	MAKLTRERKVKEKRELKEEKKAAAAAAKAAGTYSYDGEPVEAPVGNTTDPIDPTDEALAADSTVAASSEDR*
Ga0066672_104425002	3300005167	Soil	KRELKEEKKAAAAAAKAAGTYSYDGEPVEAPASNTIDSTDETVGDDSAVAVPGDDR*
Ga0066677_101470712	3300005171	Soil	MAKLTRERKVKEKRELKEEKKAAAAAAKAAGTYSYDGEPVEAPVSNAIDSTDEAVGDDSAVAVPGDDR*
Ga0066678_100138572	3300005181	Soil	MAKLTRERKVKEKRELKEEKKAAAAAAKAAGTYSYDGEPVEAPAPNTIDSTDEAVGDDSAVAIPGDDR*
Ga0070705_1016626431	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	MAKLTRERKVKEKRELKEEKKAAAAAAKAAGTYSYDGEPVEAPVGMADPIDPTDEALTADSTVAASSEDR*
Ga0070708_1000632721	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MAKLTRERKVKEKRELKEEKRAAAAAAKAAGTYSYDGEPVEAPVPNRIDSTDEARPDDSAVAASGDDR*
Ga0070678_1016485271	3300005456	Miscanthus Rhizosphere	MAKLTRERKVKEKRELKEEKKAAAAAAKAAGTYSYDGEPVELPAGAMTDPTDEASEADSTVASSGEDR*
Ga0070697_1021165351	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MAKLTRERKVKEKRELKEEKRAAAAAAKAAGTYSYDGEPVEAPALKSVDSTDETLAGDPAVAVSGDDR*
Ga0070686_1006725251	3300005544	Switchgrass Rhizosphere	RKVKEKRELKEEKKAAAAAAKAAGTYSYDGEPVEAPVGNTTDPIDPTDEALAADSAVAASSEDR*
Ga0070704_1009957372	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	MAKLTRERKVKEKRELKEEKKAAAAAAKAAGTYSYDGEPVEAPVGNTTDPIDPTDEALAADSAVAASGEDR*
Ga0066704_101769512	3300005557	Soil	MAKLTRERKVKEKRELKEEKRAAAAAAKAAGTYSYDGEPVEAPAPNTIDSTDEARPDDSAVAASGDDR*
Ga0066656_102797382	3300006034	Soil	MAKLTRERKVKEKRELKEEKKAAAAAAKAAGTYSYDGEPVEAPEIRTDEAFVADSTVGGSSEDR*
Ga0066652_1007059861	3300006046	Soil	MAKLTRERKVKEKRELKEEKKAAAAAAKAAGTYSYDGEPVEAPVGNTPDPIDSADDALVADSAGAASSEDR*
Ga0099793_106038561	3300007258	Vadose Zone Soil	MAKLTRERKVKEKRELKEEKKAAAAAAKAAGTYSYDGEPVEAPASNTIDSTDEAVGDDSAVAVPGD
Ga0066710_1044266002	3300009012	Grasslands Soil	MAKLTRERKVKEKRELKEEKRAAAAAAKAAGTYSYDGEPVEAPVPNTIDSTDEAPDDSAVAAPGDDS
Ga0099829_100275212	3300009038	Vadose Zone Soil	MAKLTRERKVKEKRELKEEKRAAAAAAKAAGTYSYDGEPVEAPVPNTIDSTDEARPDDSAVAASGDDR*
Ga0099827_100019027	3300009090	Vadose Zone Soil	MAKLTRERKVKEKRELKEEKKAAAAAAKAAGTYSYDGEPVEAPRITTDPADEADEAFVADSTVAASSEDR*
Ga0066709_1000412495	3300009137	Grasslands Soil	MAKLTRERKVKEKRELKEEKKAAAAAAKAAGTYSYDGEPVEAPEIRTDEAFVADSTVGVSSEDR*
Ga0126309_101807982	3300010039	Serpentine Soil	MAKLTRERKVKEKRELKEEKKAAAAAAKAAGTYLYDGEPVEAPVGNTADPIDPTDEALAADSPVAASSEDR*
Ga0126319_10087412	3300010147	Soil	MAKLTRERKVKEKRELKEEKKAAAAAAKAAGTYSYDGEPVEAPVGETTDPIDPTDEALAADSTVAASSEDR*
Ga0126319_10521152	3300010147	Soil	MAKLTRERKVKEKRELKEEKKAAAAAAKAAGTYSYDGEPVELPAGAMTDPTDEASEADSTAASSGEDR*
Ga0134082_101953761	3300010303	Grasslands Soil	MAKLTRERKVKEKRELKEEKRAAAAAAKAAGTYSYDGEPVEAPVPNTIDSTDEAPADD*
Ga0134065_102648862	3300010326	Grasslands Soil	MAKLTRERKVKEKRELKEEKKAAAAAAKAAGTYSYDGEPVVAPASNTIDSTDEAVGDDSAVAVPGDDR*
Ga0134071_106219502	3300010336	Grasslands Soil	MAKLTRERKVKEKRELKEEKKAAAAAAKAAGTYSYDGEPVEAPEIRTDEAFVADSTVGASSEDR*
Ga0134125_107911412	3300010371	Terrestrial Soil	MAKLTRERKVKEKRELKEEKKAAAAAAKAAGTYSYDGEPVEAPVGNMADPLEPADEALTADSTVAVSSEDR*
Ga0134125_125957862	3300010371	Terrestrial Soil	MAKLTRERKVKEKRELKEEKKAAAAAAKAAGTYSYDGEPVELPAGATTDPIDEASEADSTVASSGEDH*
Ga0134126_122849541	3300010396	Terrestrial Soil	MAKLTRERKVKEKRELKEEKKAAAAAAKAAGTYSYDGEPVEAPVGMADSIDPTDEALTADPTVAASSEDR*
Ga0134127_135161982	3300010399	Terrestrial Soil	MAKLTRERKVKEKRELKEEKKAAAAAAKAAGTYSYDGEPVEAPVGNMADPLDATDEALTADSTVAVSSEDR*
Ga0134123_129317132	3300010403	Terrestrial Soil	KRELKEEKKAAAAAAKAAGTYSYDGEPVEAPVGNMADPLDPTDEALTADSTVAVSSEDR*
Ga0138514_1000493882	3300011003	Soil	MAKLTRERKVKEKRELKEEKKAAAAAAKAAGTYSYDGEPVEAPVGNTTDPIDPTDEALTADSTMAASSEDR*
Ga0137391_104016962	3300011270	Vadose Zone Soil	RELKEEKRAAAAAAKAAGTYSYDGEPVEAPVPNTIDSTDEARPDDSAVAASGDDR*
Ga0120153_10708882	3300011991	Permafrost	RERKVKEKRELKEEKKAAAAAAKAAGTYSYDGEPVEAPLGNMTDPIDPTDEALTADSTVAASSEDR*
Ga0120157_10359722	3300011994	Permafrost	MAKLTRERKVKEKRELKEEKKAAAAAAKAAGTYSYDGEPVEAPVLSTSDSTDEEPAADPVIAASGDDR*
Ga0120159_10838252	3300012014	Permafrost	MAKLTRERKVKEKRELKEEKKAAAAAAKAAGTYSYDGEPVEAPVGDTTDPIDPTDEALVADTAVAASSEDR*
Ga0137383_105398311	3300012199	Vadose Zone Soil	MAKLTRERKVKEKRELKEEKRAAAAAAKAAGTYSYDGEPVEAPALKSVDSADETLAGDPAVAVSGDDR*
Ga0137383_105811851	3300012199	Vadose Zone Soil	MAKLTRERKVKEKRELKEEKKAAAAAAKAAGTYSYDGEPVEAPAPNTIDSTDEAVGDESAVAIPGDDR*
Ga0137382_108352632	3300012200	Vadose Zone Soil	MAKLTRERKVKEKRELKEEKKAAAAAAKAAGTYSYDGEPVEAPVGNTTDPVDPTDEALAADSTVAASSEDR*
Ga0137399_100552562	3300012203	Vadose Zone Soil	MAKLTRERKVKEKRELKEEKKAAAAAAKAAGTYSYDGEPVEAPASNAIDSTDEAVEDDSAVAVPGDDR*
Ga0137374_101211804	3300012204	Vadose Zone Soil	RERKVKEKRELKEEKKAAAAAAKAAGTYSYDGEPVEAPVGNTPDPLDQTDEAAESTAASDRQ*
Ga0137379_104950682	3300012209	Vadose Zone Soil	AKLTRERKVKEKRELKEEKKAAAAAAKAAGTYSYDGEPVEAPEIRTDEAFVADSTVGASSEDR*
Ga0137379_116776172	3300012209	Vadose Zone Soil	AKLTRERKVKEKRELKEEKKAAAAAAKAAGTYSYDGEPVEAPRITTDPADEADEAFVADSTVPAASEDR*
Ga0137377_118010112	3300012211	Vadose Zone Soil	ELKEEKKAAAAAAKAAGTYSYDGEPVEAPEIRTDPADPADEAVLADSTVGASSEDR*
Ga0137367_109143142	3300012353	Vadose Zone Soil	MAKLTRERKVKEKRELKEEKKAAAAAAKAAGTYSYDGEPVEAPVGNTPDPLDQTDEAAESTAASDRQ*
Ga0137371_103314851	3300012356	Vadose Zone Soil	MAKLTRERKVKEKRELKEEKKAAAAAAKAAGTYSYDGEPVEAPGIRTDEAFVADSTVGVSSEDR*
Ga0137360_100509512	3300012361	Vadose Zone Soil	MAKLTRERKVKEKRELKEEKRAAAAAAKAAGTYSYDGEPVEAPAPNTIDSTDEARPDDSAVAASGDGR*
Ga0137360_102130662	3300012361	Vadose Zone Soil	MAKLTRERKVKEKRELKEEKKAAAAAAKAAGTYSYDGEPVEAPALKSADSTDETLAGDPAVAVSG
Ga0137397_101931912	3300012685	Vadose Zone Soil	MAKLTRERKVKEKRELKEEKKAAAAAAKAAGTYSYDGEPVESPALDTIDSTDEELTAGSAIAAPGEDR*
Ga0157283_100958971	3300012907	Soil	MAKLTRERKVKEKRELKEEKKAAAAAAKAAGTYSYDGEPVEAPVGNTTDPIDPTDEALAADSAVAASSEDR*
Ga0137419_117888572	3300012925	Vadose Zone Soil	MAKLTRERKVKEKRELKEEKKAAAAAAKAAGTYSYDGEPVESPALDTIDSTDEALTADSAIAAPGEDR*
Ga0164300_103029612	3300012951	Soil	MAKLTRERKVKEKRELKEEKKAAAAAAKAAGTYSYDGEPVELPAVAMTDPTDEASEADTTAASSGEDR*
Ga0164300_104413552	3300012951	Soil	MAKLTRERKVKEKRELKEEKKAAAAAAKAAGTYSYDGEPVEAPVGNTTDPIDPTDEALVADSTVAASSEDR*
Ga0164303_106359792	3300012957	Soil	MAKLTRERKVKEKRELKEEKKAAAAAAKAAGTYSYDGEPVEVPAVAMTDPTDEASEADTTAASSGEDR*
Ga0164299_102286861	3300012958	Soil	MAKLTRERKVKEKRELKEEEKAAAAAAKAAGTYSYDGEPVELPAGAMTDPTDEASEADTTAASSGEDR*
Ga0164309_104898802	3300012984	Soil	MAKLTRERKVKEKRELKEEKKAAAAAAKAAGTYSYDGEPVELPAGAMTDPTDEASEADTTAASSGEDR*
Ga0164308_106263342	3300012985	Soil	MAKLTRERKVKEKRELKEEKKAAAAAAKAAGTYSYDGEPVEAPVGNMADPLDPTDEALTADSTVAVSSEDR*
Ga0164304_106172802	3300012986	Soil	MAKLTRERKVKEKRELKEEKKAAAAAAKAAGTYSYDGEPVEAPVGNTTDPIDPTDEALAADSTVAVSSEDR*
Ga0164304_107151242	3300012986	Soil	MAKLTRERKVKEKRELKEEKRAAAAAAKAAGTYSYDGEPVEAPVPNTIDSTDEARPDDSAVAASADDR*
Ga0120179_10375262	3300013763	Permafrost	MAKLTRERKVKEKRELKEEKKAAAAAAKAAGTYSYDGEPVEVPALSTSDSTDEEPAADPAIAASGDDR*
Ga0120111_10334041	3300013764	Permafrost	MAKLTRERKVKEKRELKEEKKAAAAAAKAAGTYSYDGEPFEPSPENTTDPTDEALVADATVAASSEDR*
Ga0120155_10851782	3300013768	Permafrost	MAKLTRERKVKEKRELKEEKKAAAAAAKAAGTYSYDGEPVEVPALSTSDSIDEEPAADPAIAASGDDR*
Ga0120123_10887211	3300013770	Permafrost	MAKLTRERKVKEKRELKEEKKAAAAAAKAAGTYSYDGEPVEAPALSTSDSTDEEPAADPAIAVSGDDR*
Ga0120158_100311857	3300013772	Permafrost	KEKRELKEEKKAAAAAAKAAGTYSYDGEPVEAPLGNMTDPIDPTDEALTADSTVAASSEDR*
Ga0167629_12000822	3300015209	Glacier Forefield Soil	MAKLTRERKVKEKRELKEEKKAAAAAAKAAGTYSYDGEPVEAPVGDPTDEIDETDEALVADSPVAASSEDR*
Ga0134069_10843492	3300017654	Grasslands Soil	MAKLTRERKVKEKRELKEEKKAAAAAAKAAGTYSYDGEPVEAPVGNTPDPIDSADDALVADSAGAASGEDR
Ga0184605_100004818	3300018027	Groundwater Sediment	MAKLTRERKVKEKRELKEEKKAAAAAAKAAGTYSYDGEPVEAPVGNMPDPPDSADEALVADSAVAASSEDR
Ga0184605_100007915	3300018027	Groundwater Sediment	MAKLTRERKVKEKRELKEEKRAAAAAAKAAGTYSYDGEPVEAPDVITTDATDAAPADD
Ga0184620_100453452	3300018051	Groundwater Sediment	MAKLTRERKVKEKRELKEEKKAAAAAAKAAGTYSYDGEPVEAPVGNTADPIDPTDEALTADSTVAASSEDR
Ga0184619_101433121	3300018061	Groundwater Sediment	MAKLTRERKVKEKRELKEEKKAAAAAAKAAGTYSYDGEPVEAPVGNTPDPIDSADDALMADSAGAASSEDR
Ga0184617_10676652	3300018066	Groundwater Sediment	MAKLTRERKVKEKRELKEEKKAAAAAAKAAGTYSYDGEPVEAPGGNAADPIDPTDEALTADSTVAASSEDR
Ga0066667_102151682	3300018433	Grasslands Soil	RKVKEKRELKEEKKAAAAAAKAAGTYSYDGEPVEAPVQDAIDSTDEAATVDPAIAVAGED
Ga0184643_13587831	3300019255	Groundwater Sediment	MAKLTRERKVKEKRELKEEKKAAAAAAKAAGTYSYDGEPVEAPVGDTTDPIDPTDEALTADSTVAASSEDR
Ga0193747_10682602	3300019885	Soil	MAKLTRERKVKEKRELKEEKKAAAAAAKAAGTYSYDGEPVEAPVGNTTDPIDPTDEALAADSTVAASSEDR
Ga0193727_11601822	3300019886	Soil	TTMAKLTRERKVKEKRELKEEKKAAAAAAKAAGTYSYDGEPVEAPVGNTTDSIDPTDEALAADSTVAASSEDR
Ga0193733_10158141	3300020022	Soil	VKEKRELKEEKKAAAAAAKAAGTYSYDGEPVEAPVGNTTDPIDPTDEALAADSTVAASSEDR
Ga0210382_100040964	3300021080	Groundwater Sediment	MAKLTRERKVKEKRELKEEKKAAAAAAKAAGTYSYDGEPVEAPVRDTIDPIDPADEALVADSTVAASSEDR
Ga0222622_100544081	3300022756	Groundwater Sediment	TRERKVKEKRELKEEKKAAAAAAKAAGTYSYDGEPVEAPVGNATDPIDPTDEALAADSTVAASSEDR
Ga0193714_10418691	3300023058	Soil	MAKLTRERKVKEKRELKEEKKAAAAAAKAAGTYSYDGEPVEAPVGNTADPIDPTDEALTADSTVAASSDDR
Ga0207644_105613121	3300025931	Switchgrass Rhizosphere	TRERKVKEKRELKEEKKAAAAAAKAAGTYSYDGEPVELPAGAMTDPTDEASEADSTVASSGEDR
Ga0207665_111792092	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	VKEKRELKEEKRAAAAAAKAAGTYSYDGEPVEAPVPNAMDSTDEVRPDDSAVAASGDDR
Ga0209239_11605402	3300026310	Grasslands Soil	MAKLTRERKVKEKRELKEEKKAAAAAAKAAGTYSYDGEPVEAPAPNTIDSTDEAVGDESAVAIPGDDR
Ga0209471_12365111	3300026318	Soil	MAKLTRERKVKEKRELKEEKKAAAAAAKAAGTYSYDGEPVEAPASNTIDSTDEAVGDDSAVAVPGDDR
Ga0209378_11295842	3300026528	Soil	MAKLTRERKVKEKRELKEEKKAAAAAAKAAGTYSYDGEPVEAPAPNTIDSTDEAVGDDSAVAIPGDDR
Ga0207461_10059892	3300026929	Soil	MAKLTRERKVKEKRELKEEKKAAAAAAKAAGTYSYDGEPVEAPVGMADPIDPTDEALTADSTVAASSEDR
Ga0209180_102208172	3300027846	Vadose Zone Soil	MAKLTRERKVKEKRELKEEKRAAAAAAKAAGTYSYDGEPVEAPVPNTIDSTDEARPDDSAVAASGDDR
Ga0209590_105730562	3300027882	Vadose Zone Soil	MAKLTRERKVKEKRELKEEKKAAAAAAKAAGTYSYDGEPVEAPVLNTIDSTDEEPAADSAVAASGEDR
Ga0307276_100004002	3300028705	Soil	MAKLTRERKVKEKRELKEEKKAAAAAAKAAGTYSYDGEPVEAPVGNTADPIDPTDEELAADSPVAASSEDR
Ga0307322_100442022	3300028710	Soil	MAKLTRERKVKEKRELKEEKKAAAAAAKAAGTYSYDGEPVEAPGGNAADPIDPTDEALTADSTVAASSDDR
Ga0307293_100457801	3300028711	Soil	KLTRERKVKEKRELKEEKKAAAAAAKAAGTYSYDGEPVEAPGGNAADPIDPTDEALTADSTVAASGEDR
Ga0307309_100128842	3300028714	Soil	MAKLTRERKVKEKRELKEEKKAAAAAAKAAGTYSYDGEPVEAPVGNATDPIDPTDEALAADSTVAASSEDR
Ga0307311_101266971	3300028716	Soil	LTRERKVKEKRELKEEKKAAAAAAKAAGTYSYDGEPVEAPVGNTPDPIDSADDALVADSAGAASSEDR
Ga0307301_100576182	3300028719	Soil	MAKLTRERKVKEKRELKEEKKAAAAAAKAAGTYSYDGEPVEAPVGTADPIDPTDEALTADSTVAASSEDR
Ga0307317_100378852	3300028720	Soil	MAKLTRERKVKEKRELKEEKKAAAAAAKAAGTYSYDGEPVEAPGGNAADPIDPTDEALTADSTVAASGEDR
Ga0307318_103056131	3300028744	Soil	TRERKVKEKRELKEEKKAAAAAAKAAGTYSYDGEPVEAPVGTADLIDPTDEALTADSTVAASSEDR
Ga0307288_104033751	3300028778	Soil	ERKVKEKRELKEEKKAAAAAAKAAGTYSYDGEPVEAPVGTADPIDPTDEALTADSTVAASSEDR
Ga0307284_100153181	3300028799	Soil	ELKEEKKAAAAAAKAAGTYSYDGEPVEAPVGNTTDPIDPTDEALAADSTVAASSEDR
Ga0307503_101800312	3300028802	Soil	MAKLTRERKVKEKRELKEEKKAAAAAAKAAGTYSYDGEPVELPAGAMTDPTDEASEADSTAASSGEDR
Ga0307281_100449852	3300028803	Soil	MAKLTRERKVKEKRELKEEKKAAAAAAKAAGTYSYDGEPVEAPVGVATDPTDEAFVADPTVAASSEDR
Ga0307305_101027222	3300028807	Soil	MAKLTRERKVKEKRELKEEKKAAAAAAKAAGTYSYDGEPVEIPEGSTTDPADEPLVADSTVAARGEDR
Ga0307305_101557271	3300028807	Soil	TRERKVKEKRELKEEKKAAAAAAKAAGTYSYDGEPVEAPVGNTTDPIDPTDEALAADSTVAASSEDR
Ga0307292_103841872	3300028811	Soil	MAKLTRERKVKEKRELKEEKKAAAAAAKAAGTYSYDGEPVEAPVGNTPDPPDSADEALVADSAVAASSEDR
Ga0307302_100551651	3300028814	Soil	MAKLTRERKVKEKRELKEEKKAAAAAAKAAGTYSYDGEPVEAPVGNTPDPIDSADDALVADSAGAASSEDR
Ga0307296_103011612	3300028819	Soil	MAKLTRERKVKEKRELKEEKKAAAAAAKAAGTYSYDGEPVEAPLGNTPDPPDSADEALVADSAVAASSEDR
Ga0307296_108390812	3300028819	Soil	VKEKRELKEEKKAAAAAAKAAGTYSYDGEPVEPSPERMADSTDEAFAADSPVAASGEDR
Ga0307312_100131636	3300028828	Soil	MAKLTRERKVKEKRELKEEKKAAAAAAKAAGTYSYDGEPVEAPVGNTTDPIDPTDEAL
Ga0307312_102213022	3300028828	Soil	MAKLTRERKVKEKRELKEEKKAAAAAAKAAGTYSYDGEPVEAPVGNATDPIDPTDEALAADSPVAASSEDR
Ga0307312_112023712	3300028828	Soil	MAKLTRERKVKEKRELKEEKKAAAAAAKAAGTYSYDGEPVEAPVGNTPDPIDSADDALVADSAGATSSEDR
Ga0307286_100192824	3300028876	Soil	AKLTRERKVKEKRELKEEKRAAAAAAKAAGTYSYDGEPVEAPDVITTDATDAAPADD
Ga0307278_100840423	3300028878	Soil	MAKLTRERKVKEKRELKEEKRAAAAAAKAAGTYSYDGEPVEAPDVITADATDAAPADD
Ga0307304_101338892	3300028885	Soil	KCELKEEKKAAAAAAKAAGTYSYDGEPVEAPVGNTADPIDPTDEALTADSTVAASSDDR
Ga0308201_102090962	3300031091	Soil	MAKLTRERKVKEKRELKEEKKAAAAAAKAAGTYSYDGEPVELPAGAMTDPTDEASEAEPTAVSSTEDR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F080607

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences