Metagenome / Metatranscriptome Family F080529

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F080529
Family Type	Metagenome / Metatranscriptome
Number of Sequences	115
Average Sequence Length	77 residues
Representative Sequence	MTEENEKRVRAFYEATVPGHRESLRGLQAPHVVYDLPEGMPIGCGHFEGLQDVLDRFLTSFYRALDVRFLAEEFIA
Number of Associated Samples	104
Number of Associated Scaffolds	115

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	90.43 %
% of genes near scaffold ends (potentially truncated)	97.39 %
% of genes from short scaffolds (< 2000 bps)	91.30 %
Associated GOLD sequencing projects	98
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.37

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (94.783 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere (11.304 % of family members)
Environment Ontology (ENVO)	Unclassified (25.217 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (46.957 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 44.23% β-sheet: 3.85% Coil/Unstructured: 51.92%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.37
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.37
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 115 Family Scaffolds
PF02148	zf-UBP	25.22
PF00211	Guanylate_cyc	17.39
PF07992	Pyr_redox_2	5.22
PF08240	ADH_N	3.48
PF03625	DUF302	2.61
PF06026	Rib_5-P_isom_A	0.87
PF00670	AdoHcyase_NAD	0.87
PF07366	SnoaL	0.87
PF07690	MFS_1	0.87
PF02518	HATPase_c	0.87
PF12681	Glyoxalase_2	0.87
PF13673	Acetyltransf_10	0.87
PF05014	Nuc_deoxyrib_tr	0.87
PF00248	Aldo_ket_red	0.87
PF03992	ABM	0.87
PF03886	ABC_trans_aux	0.87
PF05199	GMC_oxred_C	0.87
PF00903	Glyoxalase	0.87
PF00107	ADH_zinc_N	0.87
PF05524	PEP-utilisers_N	0.87
PF10861	DUF2784	0.87

COG ID	Name	Functional Category	% Frequency in 115 Family Scaffolds
COG5207	Uncharacterized Zn-finger protein, UBP-type	General function prediction only [R]	25.22
COG2114	Adenylate cyclase, class 3	Signal transduction mechanisms [T]	17.39
COG3439	Uncharacterized conserved protein, DUF302 family	Function unknown [S]	2.61
COG0120	Ribose 5-phosphate isomerase	Carbohydrate transport and metabolism [G]	0.87
COG0499	S-adenosylhomocysteine hydrolase	Coenzyme transport and metabolism [H]	0.87
COG2303	Choline dehydrogenase or related flavoprotein	Lipid transport and metabolism [I]	0.87
COG3613	Nucleoside 2-deoxyribosyltransferase	Nucleotide transport and metabolism [F]	0.87

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	94.78 %
Unclassified	root	N/A	5.22 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	94.78 %
Unclassified	root	N/A	5.22 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	94.78 %
Unclassified	root	N/A	5.22 %

Name	Rank	Taxonomy	Distribution
Nitrospirae	phylum	All Organisms → cellular organisms → Bacteria → Nitrospirae	32.17 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	8.70 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	6.96 %
Unclassified	root	N/A	5.22 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.87 %

Name	Rank	Taxonomy	Distribution
unclassified Nitrospirae	no rank	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae	32.17 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	6.96 %
Unclassified	root	N/A	5.22 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2.61 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	1.74 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.87 %

Name	Rank	Taxonomy	Distribution
Nitrospirae bacterium	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	32.17 %
Gemmatimonadetes	class	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes	5.22 %
Unclassified	root	N/A	5.22 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1.74 %
unclassified Gemmatimonadetes	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes	1.74 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.87 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	0.87 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.87 %

Name	Rank	Taxonomy	Distribution
Nitrospirae bacterium	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	32.17 %
Gemmatimonadales	order	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales	5.22 %
Unclassified	root	N/A	5.22 %
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	1.74 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1.74 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	0.87 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.87 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.87 %

Name	Rank	Taxonomy	Distribution
Nitrospirae bacterium	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	32.17 %
Gemmatimonadaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	5.22 %
Unclassified	root	N/A	5.22 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1.74 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1.74 %
Mesorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	0.87 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.87 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.87 %

Name	Rank	Taxonomy	Distribution
Nitrospirae bacterium	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	32.17 %
Gemmatirosa	genus	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa	5.22 %
Unclassified	root	N/A	5.22 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1.74 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1.74 %
Mesorhizobium ciceri	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → Mesorhizobium ciceri	0.87 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.87 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.87 %

Name	Rank	Taxonomy	Distribution
Nitrospirae bacterium	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	32.17 %
Gemmatirosa kalamazoonesis	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	5.22 %
Unclassified	root	N/A	5.22 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1.74 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1.74 %
Mesorhizobium ciceri	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → Mesorhizobium ciceri	0.87 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.87 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.87 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300003987\|Ga0055471_10055959	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	1079	Open in IMG/M
3300003995\|Ga0055438_10296948	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	506	Open in IMG/M
3300003999\|Ga0055469_10233939	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	582	Open in IMG/M
3300004081\|Ga0063454_101611034	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	561	Open in IMG/M
3300004156\|Ga0062589_100705735	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	896	Open in IMG/M
3300004156\|Ga0062589_101938640	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	595	Open in IMG/M
3300004633\|Ga0066395_10140185	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1214	Open in IMG/M
3300005093\|Ga0062594_101066210	All Organisms → cellular organisms → Bacteria	785	Open in IMG/M
3300005161\|Ga0066807_1027958	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	603	Open in IMG/M
3300005165\|Ga0066869_10082126	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	619	Open in IMG/M
3300005330\|Ga0070690_101134073	All Organisms → cellular organisms → Bacteria	621	Open in IMG/M
3300005335\|Ga0070666_10600488	All Organisms → cellular organisms → Bacteria	803	Open in IMG/M
3300005345\|Ga0070692_10980721	Not Available	590	Open in IMG/M
3300005353\|Ga0070669_101836867	All Organisms → cellular organisms → Bacteria	529	Open in IMG/M
3300005439\|Ga0070711_101443355	All Organisms → cellular organisms → Bacteria	599	Open in IMG/M
3300005440\|Ga0070705_100658274	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	818	Open in IMG/M
3300005441\|Ga0070700_101444577	All Organisms → cellular organisms → Bacteria	583	Open in IMG/M
3300005441\|Ga0070700_101821563	All Organisms → cellular organisms → Bacteria	525	Open in IMG/M
3300005445\|Ga0070708_101165837	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	721	Open in IMG/M
3300005468\|Ga0070707_100317914	All Organisms → cellular organisms → Bacteria	1513	Open in IMG/M
3300005468\|Ga0070707_101281194	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	699	Open in IMG/M
3300005536\|Ga0070697_101277878	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	655	Open in IMG/M
3300005539\|Ga0068853_100880405	All Organisms → cellular organisms → Bacteria	860	Open in IMG/M
3300005544\|Ga0070686_101004411	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → Mesorhizobium ciceri	684	Open in IMG/M
3300005545\|Ga0070695_101084493	All Organisms → cellular organisms → Bacteria	655	Open in IMG/M
3300005836\|Ga0074470_10221700	Not Available	2269	Open in IMG/M
3300005843\|Ga0068860_102027759	All Organisms → cellular organisms → Bacteria	597	Open in IMG/M
3300005944\|Ga0066788_10111320	All Organisms → cellular organisms → Bacteria	682	Open in IMG/M
3300006049\|Ga0075417_10026819	All Organisms → cellular organisms → Bacteria	2353	Open in IMG/M
3300006163\|Ga0070715_11008745	All Organisms → cellular organisms → Bacteria → Proteobacteria	519	Open in IMG/M
3300006173\|Ga0070716_100136946	All Organisms → cellular organisms → Bacteria → Proteobacteria	1556	Open in IMG/M
3300006806\|Ga0079220_10589201	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	787	Open in IMG/M
3300006845\|Ga0075421_101770048	All Organisms → cellular organisms → Bacteria	666	Open in IMG/M
3300006852\|Ga0075433_10169454	All Organisms → cellular organisms → Bacteria	1943	Open in IMG/M
3300006852\|Ga0075433_11092984	All Organisms → cellular organisms → Bacteria	693	Open in IMG/M
3300006871\|Ga0075434_101347935	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	724	Open in IMG/M
3300006880\|Ga0075429_100214575	All Organisms → cellular organisms → Bacteria	1686	Open in IMG/M
3300006903\|Ga0075426_10690407	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	765	Open in IMG/M
3300009089\|Ga0099828_11023590	Not Available	735	Open in IMG/M
3300009137\|Ga0066709_103039325	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	615	Open in IMG/M
3300009147\|Ga0114129_10191151	All Organisms → cellular organisms → Bacteria	2780	Open in IMG/M
3300009162\|Ga0075423_11464486	All Organisms → cellular organisms → Bacteria	732	Open in IMG/M
3300009162\|Ga0075423_11656224	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	688	Open in IMG/M
3300009176\|Ga0105242_13243046	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	505	Open in IMG/M
3300009177\|Ga0105248_12513442	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	587	Open in IMG/M
3300009609\|Ga0105347_1005350	All Organisms → cellular organisms → Bacteria → Proteobacteria	4653	Open in IMG/M
3300009807\|Ga0105061_1002869	All Organisms → cellular organisms → Bacteria	1957	Open in IMG/M
3300010304\|Ga0134088_10183363	All Organisms → cellular organisms → Bacteria	1001	Open in IMG/M
3300010304\|Ga0134088_10407671	All Organisms → cellular organisms → Bacteria	663	Open in IMG/M
3300010323\|Ga0134086_10155345	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	837	Open in IMG/M
3300010325\|Ga0134064_10388445	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	554	Open in IMG/M
3300010326\|Ga0134065_10215911	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	701	Open in IMG/M
3300010359\|Ga0126376_12993864	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	522	Open in IMG/M
3300010360\|Ga0126372_11698560	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	672	Open in IMG/M
3300010360\|Ga0126372_12937368	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	528	Open in IMG/M
3300010362\|Ga0126377_12183740	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	630	Open in IMG/M
3300010399\|Ga0134127_11259667	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	808	Open in IMG/M
3300010400\|Ga0134122_11928673	All Organisms → cellular organisms → Bacteria	627	Open in IMG/M
3300010401\|Ga0134121_11324331	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	727	Open in IMG/M
3300012285\|Ga0137370_10348669	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	890	Open in IMG/M
3300012399\|Ga0134061_1117382	All Organisms → cellular organisms → Bacteria	548	Open in IMG/M
3300012474\|Ga0157356_1004982	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	747	Open in IMG/M
3300012930\|Ga0137407_11141161	All Organisms → cellular organisms → Bacteria	739	Open in IMG/M
3300012931\|Ga0153915_10676479	All Organisms → cellular organisms → Bacteria → Proteobacteria	1191	Open in IMG/M
3300012984\|Ga0164309_10021534	All Organisms → cellular organisms → Bacteria	3388	Open in IMG/M
3300013105\|Ga0157369_10562062	Not Available	1179	Open in IMG/M
3300013308\|Ga0157375_10853670	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	1057	Open in IMG/M
3300014326\|Ga0157380_11592651	Not Available	708	Open in IMG/M
3300014745\|Ga0157377_10749693	All Organisms → cellular organisms → Bacteria	714	Open in IMG/M
3300015372\|Ga0132256_103124295	All Organisms → cellular organisms → Bacteria	557	Open in IMG/M
3300017659\|Ga0134083_10041150	All Organisms → cellular organisms → Bacteria	1717	Open in IMG/M
3300017792\|Ga0163161_12018841	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	513	Open in IMG/M
3300018052\|Ga0184638_1237262	All Organisms → cellular organisms → Bacteria	632	Open in IMG/M
3300018061\|Ga0184619_10251459	All Organisms → cellular organisms → Bacteria	813	Open in IMG/M
3300018061\|Ga0184619_10420465	All Organisms → cellular organisms → Bacteria	601	Open in IMG/M
3300018074\|Ga0184640_10522841	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	520	Open in IMG/M
3300018076\|Ga0184609_10012487	All Organisms → cellular organisms → Bacteria	3204	Open in IMG/M
3300018429\|Ga0190272_10631656	All Organisms → cellular organisms → Bacteria	947	Open in IMG/M
3300018429\|Ga0190272_12872197	All Organisms → cellular organisms → Bacteria	532	Open in IMG/M
3300019361\|Ga0173482_10073750	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	1175	Open in IMG/M
3300019487\|Ga0187893_10056603	All Organisms → cellular organisms → Bacteria	3891	Open in IMG/M
3300020070\|Ga0206356_10173711	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	527	Open in IMG/M
3300021178\|Ga0210408_10805007	All Organisms → cellular organisms → Bacteria	736	Open in IMG/M
3300025567\|Ga0210076_1006652	All Organisms → cellular organisms → Bacteria	2564	Open in IMG/M
3300025569\|Ga0210073_1086826	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	671	Open in IMG/M
3300025795\|Ga0210114_1031974	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	1106	Open in IMG/M
3300025920\|Ga0207649_10913524	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	689	Open in IMG/M
3300025922\|Ga0207646_10288239	All Organisms → cellular organisms → Bacteria	1484	Open in IMG/M
3300025930\|Ga0207701_11689703	All Organisms → cellular organisms → Bacteria	507	Open in IMG/M
3300025931\|Ga0207644_10164045	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1729	Open in IMG/M
3300025936\|Ga0207670_11048082	All Organisms → cellular organisms → Bacteria	687	Open in IMG/M
3300025961\|Ga0207712_11588991	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	586	Open in IMG/M
3300026041\|Ga0207639_11365365	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	665	Open in IMG/M
3300026532\|Ga0209160_1114961	All Organisms → cellular organisms → Bacteria → Proteobacteria	1334	Open in IMG/M
3300026944\|Ga0207570_1003990	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	945	Open in IMG/M
3300027552\|Ga0209982_1009016	All Organisms → cellular organisms → Bacteria	1470	Open in IMG/M
3300027748\|Ga0209689_1053984	All Organisms → cellular organisms → Bacteria	2237	Open in IMG/M
3300027873\|Ga0209814_10466675	All Organisms → cellular organisms → Bacteria	558	Open in IMG/M
3300027907\|Ga0207428_10813738	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	663	Open in IMG/M
3300027909\|Ga0209382_10142531	All Organisms → cellular organisms → Bacteria	2782	Open in IMG/M
3300028608\|Ga0247819_11018026	All Organisms → cellular organisms → Bacteria	525	Open in IMG/M
3300031740\|Ga0307468_101117295	All Organisms → cellular organisms → Bacteria	704	Open in IMG/M
3300031820\|Ga0307473_11266283	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	551	Open in IMG/M
3300031943\|Ga0310885_10575793	All Organisms → cellular organisms → Bacteria	622	Open in IMG/M
3300032017\|Ga0310899_10178510	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	926	Open in IMG/M
3300032075\|Ga0310890_10199526	All Organisms → cellular organisms → Bacteria	1371	Open in IMG/M
3300032179\|Ga0310889_10192066	All Organisms → cellular organisms → Bacteria	939	Open in IMG/M
3300032180\|Ga0307471_101016831	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	996	Open in IMG/M
3300032180\|Ga0307471_102658503	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	634	Open in IMG/M
3300032180\|Ga0307471_103502661	All Organisms → cellular organisms → Bacteria	556	Open in IMG/M
3300032205\|Ga0307472_102359633	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	539	Open in IMG/M
3300033412\|Ga0310810_11039025	All Organisms → cellular organisms → Bacteria	693	Open in IMG/M
3300034100\|Ga0373910_0067926	Not Available	897	Open in IMG/M
3300034176\|Ga0364931_0282645	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	549	Open in IMG/M
3300034417\|Ga0364941_109199	All Organisms → cellular organisms → Bacteria	672	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	73.04%
Host-Associated	Host-Associated	26.09%
Engineered	Engineered	0.87%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	60.87%
Plants	Host-Associated → Plants	26.09%
Aquatic	Environmental → Aquatic	12.17%
Bioremediation	Engineered → Bioremediation	0.87%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	58.26%
Rhizosphere	Host-Associated → Plants → Rhizosphere	21.74%
Sediment	Environmental → Aquatic → Sediment	6.09%
Marine	Environmental → Aquatic → Marine	5.22%
Rhizoplane	Host-Associated → Plants → Rhizoplane	4.35%
Floodplain	Environmental → Terrestrial → Floodplain	1.74%
Freshwater	Environmental → Aquatic → Freshwater	0.87%
Cave	Environmental → Terrestrial → Cave	0.87%
Metal	Engineered → Bioremediation → Metal	0.87%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	40.87%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	17.39%
Loam	Environmental → Terrestrial → Soil → Loam	15.65%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	6.09%
Wetlands	Environmental → Aquatic → Marine → Wetlands	5.22%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	4.35%
Soil	Host-Associated → Plants → Rhizosphere → Soil	4.35%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	1.74%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.87%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.87%
Sand	Environmental → Terrestrial → Soil → Sand	0.87%
Unclassified	Environmental → Terrestrial → Cave → Unclassified	0.87%
Unclassified	Engineered → Bioremediation → Metal → Unclassified	0.87%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	22.61%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	17.39%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	13.91%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	6.09%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	6.09%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	5.22%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	4.35%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	4.35%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	4.35%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	4.35%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.48%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	1.74%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.87%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.87%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.87%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.87%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	0.87%
Unclassified	Environmental → Terrestrial → Cave → Unclassified → Unclassified	0.87%
Unclassified	Engineered → Bioremediation → Metal → Unclassified → Unclassified	0.87%

Habitat	Taxonomy	Distribution
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	11.30%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	11.30%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	6.09%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	5.22%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	5.22%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	4.35%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	4.35%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	4.35%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	3.48%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	3.48%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	2.61%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.61%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	2.61%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	2.61%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.74%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.74%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	1.74%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.74%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.74%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.74%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	0.87%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	0.87%
Sediment (Intertidal)	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal)	0.87%
Unplanted Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Unplanted Soil	0.87%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.87%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.87%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.87%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	0.87%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.87%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	0.87%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.87%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.87%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	0.87%
Microbial Mat On Rocks	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Microbial Mat On Rocks	0.87%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.87%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.87%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.87%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.87%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.87%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.87%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.87%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.87%
Sediment Slurry	Engineered → Bioremediation → Metal → Unclassified → Unclassified → Sediment Slurry	0.87%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300003987	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleB_D2	Environmental	Open in IMG/M
3300003995	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_TuleA_D2	Environmental	Open in IMG/M
3300003999	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleA_D2	Environmental	Open in IMG/M
3300004081	Grasslands soil microbial communities from Hopland, California, USA - 2 (version 2)	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005161	Soil and rhizosphere microbial communities from Laval, Canada - mgLPA	Environmental	Open in IMG/M
3300005165	Soil and rhizosphere microbial communities from Laval, Canada - mgHMC	Environmental	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005335	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG	Host-Associated	Open in IMG/M
3300005345	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG	Environmental	Open in IMG/M
3300005353	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG	Host-Associated	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005441	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005539	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2	Host-Associated	Open in IMG/M
3300005544	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG	Environmental	Open in IMG/M
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental	Open in IMG/M
3300005836	Microbial communities from Youngs Bay mouth sediment, Columbia River estuary, Oregon - S.42_YBB	Environmental	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300005944	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 2 DNA2013-048	Environmental	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006880	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3	Host-Associated	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009609	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT890	Environmental	Open in IMG/M
3300009807	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_0_10	Environmental	Open in IMG/M
3300010304	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09182015	Environmental	Open in IMG/M
3300010323	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010325	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_2_0_1 metaG	Environmental	Open in IMG/M
3300010326	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300012285	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaG	Environmental	Open in IMG/M
3300012399	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_24_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012474	Unplanted soil (control) microbial communities from North Carolina - M.Soil.3.yng.040610	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012931	Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 3 metaG	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300013105	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300014745	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300017659	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300018052	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b2	Environmental	Open in IMG/M
3300018061	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_b1	Environmental	Open in IMG/M
3300018074	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b2	Environmental	Open in IMG/M
3300018076	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_coex	Environmental	Open in IMG/M
3300018429	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 T	Environmental	Open in IMG/M
3300019361	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 (version 2)	Environmental	Open in IMG/M
3300019487	White microbial mat communities from a basaltic lava cave in the Kipuka Kanohina Cave System on the Island of Hawaii, USA - MA170107-4 metaG	Environmental	Open in IMG/M
3300020070	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-1 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300025567	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailA_D2 (SPAdes)	Environmental	Open in IMG/M
3300025569	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqC_D2 (SPAdes)	Environmental	Open in IMG/M
3300025795	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleA_D2 (SPAdes)	Environmental	Open in IMG/M
3300025920	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025930	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Environmental	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025936	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)	Environmental	Open in IMG/M
3300025961	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026041	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026532	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153 (SPAdes)	Environmental	Open in IMG/M
3300026944	Soil microbial communities from Kellog Biological Station, Michigan, USA - Nitrogen cycling UWRJ-G01K2-12 (SPAdes)	Environmental	Open in IMG/M
3300027552	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M1 S AM (SPAdes)	Host-Associated	Open in IMG/M
3300027748	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149 (SPAdes)	Environmental	Open in IMG/M
3300027873	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028608	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Xylose_Day6	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031943	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D2	Environmental	Open in IMG/M
3300032017	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D4	Environmental	Open in IMG/M
3300032075	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3	Environmental	Open in IMG/M
3300032179	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D2	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300033412	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NC	Environmental	Open in IMG/M
3300034100	Uranium-contaminated sediment microbial communities from bioreactor in Oak Ridge, Tennessee, United States - B4A4.2	Engineered	Open in IMG/M
3300034176	Sediment microbial communities from East River floodplain, Colorado, United States - 21_j17	Environmental	Open in IMG/M
3300034417	Sediment microbial communities from East River floodplain, Colorado, United States - 17_s17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0055471_100559591	3300003987	Natural And Restored Wetlands	MSDEQENERLVRAFYEATVPGHREALRGIQSPHVIYDMPEGMPNGCGHFEGLRDVLERFLTSFYGALDVRFVAEELIASGDEVVAL
Ga0055438_102969482	3300003995	Natural And Restored Wetlands	MAEEDNEKRVRAFYEATIPGHRESLRGLQAPHVVYDMPTGMPVGCGRFEGLQDVLERFLTSFYRSLDVHFIAEEFIAAGE
Ga0055469_102339391	3300003999	Natural And Restored Wetlands	MSDEQENERLVRAFYEATVPGHREALRGIQSPHVIYDMPEGMPNGCGHFEGLRDVLERFLTSFYGALDVRFVAEELIASGDEVV
Ga0063454_1016110342	3300004081	Soil	MIDEEENERRVRAFYEATVPGHRESLRGLQAPHVIYDMPRGMPIGCGHFEGLDDVLERFLTSFYVALDV
Ga0062589_1007057352	3300004156	Soil	MTENEKLVRAFYEATAPGHRESLRGLQAPHVVYDLPQGMPIGGGHFEGLGDILEHFLTNFYAAFDVHFVPEEFVA
Ga0062589_1019386402	3300004156	Soil	MSQEENEKRVRRFYEATAPGHREALRGLQDPHVVYDMPEGMPVGCGHYEGLEDILERFLTNFYGAFDVHFSADEFVTAGE
Ga0066395_101401852	3300004633	Tropical Forest Soil	MIDENEKLVRAFYEATVPGHREALRAIQAPHVVYDLPKGMPIGCGHFEGLDDVLERFLASFYGALDVRFIAEEFITSGESVV
Ga0062594_1010662103	3300005093	Soil	MTDVGENEKHVRAFYEATAPGHRERLRSLQVPNVVYDLPDGMPVGAGHFEGFQDITEGFLANFYGAFDVRFVPE
Ga0066807_10279582	3300005161	Soil	MKIGETEEKRMTEENEKRVRAFYEATVPGHRESLRGLQAPHVVYDLPEGMPIGCGHFAGLEDVLEHFLADFYRAFDVRFVAEEFIAAGENV
Ga0066869_100821262	3300005165	Soil	MTHEEQNEHRVRAFYKATVPGHREPLRALQAPQVVYDLQEGMPIGGGHFEGLEDVLERFLTNFYGAFDVRFVAEE
Ga0070690_1011340731	3300005330	Switchgrass Rhizosphere	MSAAENEKLARRFYESTAPGHREALRAIQASHVVYDLPEGMPAGAGHFEGLEDVLERFLTPFY
Ga0070666_106004882	3300005335	Switchgrass Rhizosphere	MSAAENEKLARRFYESTAPGHREALRAIQASHVVYDLPEGMPAGAGHFEGLEDVLERFLTPFYGAFDVHFTPEEFIVAEQT
Ga0070692_109807212	3300005345	Corn, Switchgrass And Miscanthus Rhizosphere	MSEADNEHRVRAFYEATIPGHRESLRGLQAPHVIYDLPLGMPIGCGHFEGLQDVLERFLTSFYQALDVRFI
Ga0070669_1018368671	3300005353	Switchgrass Rhizosphere	MVASENEQLARSFYESTVPGHRERLRAIQAPHVVYDMPDGMPVGAGHFEGLEDVLERFLTDFYGALDVHFVAEEFVTEGE
Ga0070711_1014433552	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MSESENEKLVRAFYEATVPGHREALRGIQAPHVVYDLPEGMPVGCGHFEGLQDVLERFLTSFYAALDVHFTAEE
Ga0070705_1006582742	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	MTDEKQNEKHVRAFYEATAPGHRERLRSLQVPRVVYDLPEGMPVGAGHFEGFEDITERFLATFYGALDVRFVPEEFIA
Ga0070700_1014445772	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	MAARESEQLVRSFYESTVPGHRERLRAIQAPHVVYDMPDGMPVGAGHFEGLEDVLERFLADFYGAFDVHFVAEEFVTE
Ga0070700_1018215631	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	MIQDNEKLVRAFYEATAPGHRARLRALQSPHVVYDMPEGMPIGAGHFEGLQDILERFLTSFYGALDVHFVAEEFIAG
Ga0070708_1011658372	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MSTTVENEKLARAFYDATAPGHREALWGLQASHVVYDLPQGMPVGAGHFEGLEDVLERFLTPFYGAFDVRFIAEEFIAAGDHVVAIG
Ga0070707_1003179141	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MTENETRVRAFYESTAPGHRESLWALQAPHVVYEQPKGMPVGGGIFEGLEDVLERFLTSFYTALDVHFVA
Ga0070707_1012811942	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MEIRDTEEKTMIEENEKRVRAFYEATVPGHRESLRGLQAPHVVYDMPEGMPIGCGHFEGLQDVLDRFLTSFY
Ga0070697_1012778781	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MTHEEQNENRVRAFYKATVPGHREALRGLQAPQVVYDLPEGMPIGGGHFEGLEDVLERFLTNFYGAFDVRF
Ga0068853_1008804052	3300005539	Corn Rhizosphere	MTEENEKRVRAFYEATAPGHRESLRGLQSPHVVYDMPEGLPIGCGHFVGLQDVLERFLTSFYRALDVHFIA
Ga0070686_1010044111	3300005544	Switchgrass Rhizosphere	MTSEEQNEKRVRAFYAATAPGHREALRGLQSPDVIYDLPEGMPVGGGHMQGLDEVMEKFLANFYGAFDVRFVA
Ga0070695_1010844931	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	MTQEENEKRVRAFYEATVPGHRNALRGLQAPHVVYDMPEGMPMGCGHFEGLQDVLDGFLTSFYRALDVHFVTEEFITAGE
Ga0074470_102217002	3300005836	Sediment (Intertidal)	MTDEKQNEKRVRAFYEATVPGHREPLRGLQAPHVVYDLPEGMPIGGGHFEGLEDVLERFLTNFYGAFDVRFVAEEFI
Ga0068860_1020277591	3300005843	Switchgrass Rhizosphere	MTEENEKRVRAFYEATAPGHRESLRGLQSPHVVYDMPEGLPIGCGHFVGLQDVLERFLTSFYRALDVHFIAEEFIAAREEV
Ga0066788_101113202	3300005944	Soil	MIGQNEKLVREFYEATAPGHRQATRGLQAPRVVYDFPKGMPAGSGHFEGLQDVFDRFLTNFYEAFDVQLIVEK
Ga0075417_100268194	3300006049	Populus Rhizosphere	MADEAENEKLVRAFYEATVPGHRESLRGLQAPHVIYDLPEGMPIGCGHFEGLQDVLERFLTSFYGA
Ga0070715_110087452	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	MVDENEELVRAFYESTAPGHRERLWAIQAPHVVYDLPEGMPVGAGHFEGLEDILERFLTSFYGALDVRFLADEFVAAGDTVVAIGRIK
Ga0070716_1001369461	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	MTEENEKLVRAFYEATVPGHRESLRAIQAPHIVYDFPKGMPIGCGHFEGLDDVLQRFLTSFYGALDVRLIAEE
Ga0079220_105892011	3300006806	Agricultural Soil	MSEADNEHRVRAFYEATIPGHRESLRGLQAPHVIYDLPLGMPIGCGHFEGLQDVLERFLTSFYQALDVRFIAEEFISAGDQVVAL
Ga0075421_1017700482	3300006845	Populus Rhizosphere	MSENEQLVRAFYESTVPGHRERLRAIQSPHVVYDLPEGMPVACGHFEGLEDVLDRFLTTFYGALDVRFLAEEFVAQGETVVAI
Ga0075433_101694541	3300006852	Populus Rhizosphere	MTEENEKRVRAFYEATVPGHRESLRGLQAPHVVYDLPEGMPIGCGHFEGLQDVLDRFLTSFYRALDVRFLAEEFIA
Ga0075433_110929841	3300006852	Populus Rhizosphere	MSEENEKRVRAFYEATMPGHRESLRGLQAPHVVYDLPEGMPVGCGHFEGLQDVLDRFLTSFYRALDVRFLAEEFIAAGENV
Ga0075434_1013479351	3300006871	Populus Rhizosphere	MTEENEKRVRAFYEATAPGHRESLRGLQAPHVVYDLPEGMPIGCGHFAGLDDVLERFLTDFYRAFDVRFVAEEFIAAGENV
Ga0075429_1002145754	3300006880	Populus Rhizosphere	MSANIPANTEENEKRVRAFYEATVPGHREALRGLQAPHVIYDLPEGMPVGCGHFEGLQDVLDRFLTSFYGALDVHFVAEEFIA
Ga0075426_106904071	3300006903	Populus Rhizosphere	MSESENEKLVRAFYEATVPGHREALRGIQAPHVVYDLPEGMPVGCGHFEGLQDVLERFLTSFYAALDVHFTAE
Ga0099828_110235902	3300009089	Vadose Zone Soil	MIEENEKRVRAFYEATVPGHRESLRGLQAPHVVYDLPQGMPVGCGHFEGLQDVLERFLTSFYGAFDVRFVAEEFIAA
Ga0066709_1030393252	3300009137	Grasslands Soil	VEYLKGLAASELSTRDWHEVGENKEKKMTQEADNEKRVRAFYEATIPGHRESLRGLQAPHVIYDMPKGMPIGCGHFEGLQDVLERFLTSFYGSLDIHFIAEEFISAGE
Ga0114129_101911511	3300009147	Populus Rhizosphere	MADEAENEKLVRAFYEATVPGHRESLRGLQAPHVIYDLPEGMPIGCGHFEGLQDVLERFLTSFY
Ga0075423_114644862	3300009162	Populus Rhizosphere	MTDGGENEKHVRAFYEATAPGHRERLRSLQVPNVVYDLPDGMPVGAGHFEGFQDITERFLANFYGAFVLSPTPRGWLVR*
Ga0075423_116562241	3300009162	Populus Rhizosphere	MSESENEKLVRAFYEATVPGHREALRGIQAPHVVYDLPEGMPVGCGHFEGLQDVLERFLTSFYAALDVHFTAEEF
Ga0105242_132430461	3300009176	Miscanthus Rhizosphere	MTSEEQNEKRVRAFYAATAPGHREALRGLQSPDVIYDLPEGMPVGGGHMQGLDEVMEKFLANFYGAFDVRFV
Ga0105248_125134421	3300009177	Switchgrass Rhizosphere	MSEADNEHRVRAFYEATIPGHRESLRGLQAPHVIYDLPLGMPIGCGHFEGLQDVLERFLTSFYQALDVRFIAEEFISAGDQ
Ga0105347_10053503	3300009609	Soil	MEEKHMIEDNENRVRAFYEATVPGHRESLRGLQSPHVVYDMSKGMPIGCGHFEGLQDVLERFLTSFYAALDVHFVAEEFIA*
Ga0105061_10028694	3300009807	Groundwater Sand	MMTKETEEKRMTDENEKRVRAFYEATLPGHRESLRGLQAPHVVYDLPEGMPIGCGHFEGLQDVLERFLTSF*
Ga0134088_101833631	3300010304	Grasslands Soil	MTEEENEKRVRAFYEATVPGHRESLRGLQAPHVIYDLPKGMPIGCGHFEGLQDVLDRFLTSFYGALDVRFVAEEFITAGEHVVALG
Ga0134088_104076712	3300010304	Grasslands Soil	MADEEENEKLVRAFYEATVPGHRESLRGIQAPHVIYDLPEGMPIGCGHFEGLQDVLERFLTSFYGAFDVRFVA
Ga0134086_101553452	3300010323	Grasslands Soil	MSTNIPADSEENEKRVRAFYEATVPGHREALRGLQAPHVVYDLPEGMPIGCGHFEGLQDVLERFLTSFYGALDVRFIAEEFISAGENVVAL
Ga0134064_103884452	3300010325	Grasslands Soil	MSTNIPADSEENEKRVRAFYEATVPGHREALRGLQAPHVVYDLPEGMPIGCGHFEGLQDVLERFLTSFYGALDVRFIAEEFISAGENVV
Ga0134065_102159112	3300010326	Grasslands Soil	MSTNIPADSEENEKRVRAFYEATVPGHREALRGLQAPHVVYDLPEGMPIGCGHFEGLQDVLERFLTSFYGALDVRFIAEEFISAGENVVALGRIQG
Ga0126376_129938641	3300010359	Tropical Forest Soil	MANEKENEKLGRAFYEATVPGHREKLRGIQAPHVIYDLPEGMPIGCGHFEGLQDVLERFLTSFHGAFDVRFLAE
Ga0126372_116985601	3300010360	Tropical Forest Soil	MTGSGKEEKRMIEENEKLVRAFYDATVPGHRESLRGIQAPRVVYELPKGMPIGCGHFEGLDDVLERFLTSFYGA
Ga0126372_129373681	3300010360	Tropical Forest Soil	MSDEKENEKLVRAFYAATAPGHREALRGIQAPHVIYDLPQGMPIGCGHFEGLQDVLERFLTSFYTVLDVHFISEEFITAGD
Ga0126377_121837402	3300010362	Tropical Forest Soil	MAKEEHEKRVRAFYDATVPGHREALRGLQAPHVIYDLPEGMPIGCGHFEGLQDVLERFLTSFYSVLDVHFIAEEFIAAGENVVALGR
Ga0134127_112596673	3300010399	Terrestrial Soil	MSESENEKLVRAFYEATVPGHREALRGIQAPHVVYDLPEGMPVGCGHFVGLQDVLERFLTSFYAALAVPCTAEELVTGGQ
Ga0134122_119286732	3300010400	Terrestrial Soil	LVFRSHFWPRQRLVRAFYDSTAPGHREALWGIEAPGVAYDFPSGMPVAAGHFEGLLDITDRFLTSFYGAFDVRLLAEEFITSGEHVVAIGRI
Ga0134121_113243311	3300010401	Terrestrial Soil	LTLAVVQRIVPRMSEAEKQVRAFYEHTAPAHREALRGLQEPHVVYDMPEGMPVGAGHFEGLEDVQERFLTSFYGAL
Ga0137370_103486692	3300012285	Vadose Zone Soil	MTHEEQNEDRVRAFYKATVPGHREALRGLQAPQVVYDLPEGMPIGGGHFEGLDDVLERFLANFYGAFDVRFV
Ga0134061_11173822	3300012399	Grasslands Soil	MSTNIPADSEENEKRVRAFYEATVPGHREALRGLQAPHVIYDLPEGMPIGCGHFEGLQDVLDRFLTS
Ga0157356_10049823	3300012474	Unplanted Soil	MSESENEKLVRAFYEATVPGHREALRGIQAPHVVYDLPEGMPVGCGHFEGLQDVLERFLTSFYAALDVHFTAEEFITGG
Ga0137407_111411613	3300012930	Vadose Zone Soil	MSDEENEELVRAFYEATVPGHRERLWALQAPHVVYDLPEGMPVGSGHFEGLEDVLERFLTDFYGAFDVRFVAEEFITQGENAVAIGRIQ
Ga0153915_106764791	3300012931	Freshwater Wetlands	MSEADNEKRVRAFYEATVPGHRQSLRGLQAPDVVYDMPDGMPIGCVHFDGLQDVLDRFLVSFYGALDIHFVTEEFISAG
Ga0164309_100215341	3300012984	Soil	MSESENEKLVRAFYEATVPGHREALRGIQAPHVVYDLPEGMPVGCGHFEGLQDVLERFLTSFYAA
Ga0157369_105620621	3300013105	Corn Rhizosphere	MTLEEQNEKRVRAFYDATAPGYREPLRSLQAPQVVYDLPEGMPTGGGRFEGLEDVLERFLCDFYGAFDV
Ga0157375_108536702	3300013308	Miscanthus Rhizosphere	MTHEEQNEKRVRAFYEATVPGHREPLRGLQATQVVYDLQEGMPIGGGHFEGLEDVLERFLTNFYGAFDVRFVAEEF
Ga0157380_115926511	3300014326	Switchgrass Rhizosphere	MAARESEQLVRSFYESTVPGHRERLRAIQAPHVVYDMPDGMPVGAGHFEGLEDVLERFLTDFYGALDVHFVAEEF
Ga0157377_107496932	3300014745	Miscanthus Rhizosphere	MSAAENEKLARRFYESTAPGHREALRAIQASHVVYDLPEGMPAGAGHFEGLEDVLERFLTPFYGAFDVHFTA
Ga0132256_1031242952	3300015372	Arabidopsis Rhizosphere	MIEEENEKRVRAFYEATVPGHRESLRGLQAPHVVYDMPEGMPMGCGHFEGLQDVLDRFLPSFYKALDV
Ga0134083_100411504	3300017659	Grasslands Soil	MSTNIPADTEENEKRVRAFYEATVPGHREALRGLQAPHVVYDLPEGMPIGCGHFEGLQDVLERFLTSFYGAFDVRFVAE
Ga0163161_120188411	3300017792	Switchgrass Rhizosphere	MTENEKLVRAFYEATAPGHRESLRGLQAPHVVYDLPEGMPVGGGHFEGLEDVTERFLASFYEVFDVRFVAEEFIAG
Ga0184638_12372622	3300018052	Groundwater Sediment	MTEEENEKRVRAFYEATIPGHRESLRGLQAPHVVYDMPEGMPIGCGHFEGLQDVLERFLTSFYR
Ga0184619_102514591	3300018061	Groundwater Sediment	MVDEEENEKLVRAFYEATAPGHRASLRGLQAPQVIYDLPEGMPIGCGHFEGLQDVLERFLTSFYGAFDVRFVAEE
Ga0184619_104204651	3300018061	Groundwater Sediment	MTAEENEKRVRAFYEATIPGHRESLRGLQAPHVVYDMPEGMPIGCGHFEGLQDVLDRFLTSFYRALDVHFVAEEFIAA
Ga0184640_105228411	3300018074	Groundwater Sediment	MTEENEKRVRAFYEATIPGHRESLRGLQAPHVVYDLPEGMPIGCGHFEGLQDVLERFLTNFYRAFDVRFVAEEFIAA
Ga0184609_100124874	3300018076	Groundwater Sediment	MTEEENEKRVRAFYEATIPGHRESLRGLQAPHVVYDMPEGMPIGCGHFEGLQDVLERFLTSFYRALDVHFVAEEFIAAGEEVVALGR
Ga0190272_106316564	3300018429	Soil	MIEENEKRVRAFYEATVPGHREALRGIQSPHVVYDLPKGMPVGAGHFEGLEDVLERFLTSFYAALDVHFIA
Ga0190272_128721972	3300018429	Soil	MIEDNEKRVRAFYEATVPGHRESLRGLQSPHVVYDMPKGMPIGCGHFEGLQDVLERFLTSFYKALDVHFIA
Ga0173482_100737501	3300019361	Soil	MSEADNEHRVRAFYEATIPGHRESLRGLQAPHVIYDLPLGMPIGCGHFEGLQDVLERFLTSFYQE
Ga0187893_100566031	3300019487	Microbial Mat On Rocks	MTEENEKLVRAFYEATVPGHREPLRGLQSPHVVYDLPEGMPIGCGHFEGLQDVLERFLTSFYGALDVRFVTEEFIAAGEH
Ga0206356_101737111	3300020070	Corn, Switchgrass And Miscanthus Rhizosphere	MTLEEQNEKRVRAFYDATAPGHREPLRGLQAPQVVYDLPEGMPIGGGRFEGLEDVLERFLCDFY
Ga0210408_108050072	3300021178	Soil	MTEENEKLVRAFYEATVPGHRESLRAIQAPHVVYDFPKGMPIGCGHFEGLDDVLQRFLTSFYGALDVRLIAEEFIAAGDS
Ga0210076_10066524	3300025567	Natural And Restored Wetlands	MTDEEENEKRVRAFYEATVPGHRESLRGLQAPHVIYDMPEGMPIGCGHFEGLQDVLERFLTSFYRA
Ga0210073_10868261	3300025569	Natural And Restored Wetlands	MAEEDNEKRVRAFYEATIPGHRESLRGLQAPHVVYDMPTGMPVGCGRFEGLQDVLERFLTSFYRSLDVHFIAEELIAAGEEI
Ga0210114_10319741	3300025795	Natural And Restored Wetlands	MTDEEENEKRVRAFYEATVPGHRESLRGLQAPHVIYDMPEGMPIGCGHFEGLQDVLERFLTSFYRALDVHFVAEELIAAGENVVALG
Ga0207649_109135243	3300025920	Corn Rhizosphere	MSESENEKLVRAFYEATVPGHREALRGIQAPRVVYDLPEGMPVGCGHFEGLQDVLERFLTSFYAALDVHFTAEE
Ga0207646_102882394	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MTENETRVRAFYESTAPGHRESLWALQAPHVVYEQPKGMPVGGGIFEGLEDVLERFLTSFYTALDVHFVAEQFIAAGDD
Ga0207701_116897032	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	MVASENEQLARSFYESTVPGHRERLRAIQAPHVVYDMPDGMPVGAGHFEGLEDVLERFLTDFYGAFDVHFVAEEF
Ga0207644_101640453	3300025931	Switchgrass Rhizosphere	MTEENEKRVRAFYEATAPGHRESLRGLQSPHVVYDMPEGLPIGCGHFVGLQDVLERFLTSFYRALDVHFIAEEFIAAREEVVALGRIQGKT
Ga0207670_110480821	3300025936	Switchgrass Rhizosphere	MKISETEEKRMTDENEKRVRAFYEATAPGHRESLRGLQSPHVVYDMPEGLPIGCGHFVGLQDVLERFLTSFYRAL
Ga0207712_115889912	3300025961	Switchgrass Rhizosphere	MIEEENEKRVRAFYEATVPGHRESLRGLQAPHVVYDMPEGMPMGCGHFEGLQDVLDRFLTSFYKALDVHFVAEEFIAAGEEV
Ga0207639_113653651	3300026041	Corn Rhizosphere	MTEENEKRVRAFYEATAPGHRESLRGLQSPHVVYDMPEGLPIGCGHFVGLQDVLERFLTSFYRALDVHFIAEEFIAAGEEV
Ga0209160_11149612	3300026532	Soil	MDANEALVRAFYEATVPGHRERLWAIQAPHVVYDMPEGMPVGAGHFEGLEDVLERFLTSFYGALDVRFL
Ga0207570_10039901	3300026944	Soil	MSEADNEHRVRAFYEATIPGHRESLRGLQAPHVIYDLPLGMPIGCGHFEGLQDVLERFLTSFYQALDVRFIAEEFISAGDQV
Ga0209982_10090164	3300027552	Arabidopsis Thaliana Rhizosphere	MTDEAENEKLVRAFYEATVRGHREALRGIQSPHVVYDLPAGMPIACGHFDGLQDVLERFLTNFYLALDVRF
Ga0209689_10539844	3300027748	Soil	MSTNIPADTEENEKRVRAFYEATVPGHREALRGLQAPHVVYDLPEGMPIGCGHFEGLQDVLERFLTSFY
Ga0209814_104666751	3300027873	Populus Rhizosphere	MSANIPANTEENEKRVRAFYEATVPGHREALRGLQAPHVIYDLPEGMPVGCGHFEGLQGVLDRFLTSFYG
Ga0207428_108137381	3300027907	Populus Rhizosphere	MSEGDNENRVRAFYEATVPGHRESLRGLQAPHVIYDLPLGMPIGCGHFEGLQDVLERFLTSFYNALDVHFIAEEFIAGGDQVVALG
Ga0209382_101425313	3300027909	Populus Rhizosphere	MSEENEKRVRAFYEATMPGHRESLRGLQAPHVVYDLPEGMPVGCGHFEGLQDVLDRFLTSFYRALDVRFLAEEFIAAGENVIAIGRIE
Ga0247819_110180261	3300028608	Soil	MIQDNEKLVRAFYESTAPGHRARLRALQSPQVVYDMPEGMPIGAGHFEGLQEILERFLTSFYG
Ga0307468_1011172951	3300031740	Hardwood Forest Soil	MADEEENEKLVRAFYEATAPGHRASLRGLQAPQVIYDLPEGMPIGCGHFKGLQDVLERFLTSFYGAFDVRFVAEEF
Ga0307473_112662832	3300031820	Hardwood Forest Soil	MIEENEKRVRAFYEATVPGHRASLRGLQAPHVVYDMPEGMPMGCGHFEGLQDVLDRFLPSFYKALDVHFVAEEFIA
Ga0310885_105757932	3300031943	Soil	MTQEENEKRVRAFYEATVPGHREALRGLQAPHVVYDMPEGMPMGCGHFEGLQDVLDGFLTSFYRALDVHFV
Ga0310899_101785103	3300032017	Soil	MTQEENEKRVRAFYEATVPGHREALRGLQAPHVVYDMPEGMPMGCGHFEGLQDVLDGFLTSFYRALDVHFVTEEFIT
Ga0310890_101995261	3300032075	Soil	MSESENEKLVRAFYEATVPGHREALRGIQAPHVVYDLPEGMPVGCGHFEGLQDVLERFLTSFYAALDVHFTAEEFITGGENVVALG
Ga0310889_101920661	3300032179	Soil	MIEEENTKRVRAFYEATVPGHRESLRGLQAPHVVYDMPEGMPVGCGHFVGLQDVLERFLSSFYKALDVHF
Ga0307471_1010168312	3300032180	Hardwood Forest Soil	MENSMSTNIPANTEENEKRVRAFYEATVPGHRESLRGLQAPHVVYDMPEGMPIGCGHFEGLQDVLERFLTSFYRALDVHFVAEEFIAAGDEVV
Ga0307471_1026585031	3300032180	Hardwood Forest Soil	MTHEEQNEHRVRAFYKATVPGHREALRGLQAPQVVYDLQEGMPIGGGHFEGLEDVLERFLTNFYGAFDVRFVAEEF
Ga0307471_1035026612	3300032180	Hardwood Forest Soil	MTARESEQLVRSFYESTLPGHRERLRAIQAPHVVYDMPDGMPVGAGHFEGLEDVLERFLTDFYGALDVRFVAEEF
Ga0307472_1023596331	3300032205	Hardwood Forest Soil	MTHEEQNENRVRAFYKATVPGHREALRGLQAPQVVYDLPEGMPIGGGHFEGLEDVLERFLTNFYGAFDVRFVAEE
Ga0310810_110390251	3300033412	Soil	MSEADNENRVRAFYEATAPGHRESLRGLQAPHVIYDLPLGMPIGCGHFEGLQDVLERFLTSFYQALDVHFIAEEFIAA
Ga0373910_0067926_3_215	3300034100	Sediment Slurry	MGYTEESKVIEEENEKRVRGFYESTVPGHRESLWRLQAPHVVYDLPDGMPVGCGHFEGLLDVTERFLTSFY
Ga0364931_0282645_3_266	3300034176	Sediment	LDYYIKTEEIKMTEENEKRVRAFYEATVPGHRESLRGLQAPHVIYDMPEGMPIGCGHFEGLQDVLERFLTSFYRALDVHFVAEEFISA
Ga0364941_109199_1_216	3300034417	Sediment	MIEEENEKRVRAFYEATVPGHRESLRGLQAPHVVYDMPEGMPMGCGHFEGLQDVLDRFLTSFYKALDVHFVA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F080529

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences