NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome Family F080472

Metagenome Family F080472

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F080472
Family Type Metagenome
Number of Sequences 115
Average Sequence Length 78 residues
Representative Sequence YFDQKVTYVAPPGGSDISGASAAEVSPSSAKYIVIAVSVTLDAVGQPGSTGYQPPYSVLLCSDVTLRNTDLWSY
Number of Associated Samples 95
Number of Associated Scaffolds 115

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 0.87 %
% of genes near scaffold ends (potentially truncated) 99.13 %
% of genes from short scaffolds (< 2000 bps) 95.65 %
Associated GOLD sequencing projects 84
AlphaFold2 3D model prediction Yes
3D model pTM-score0.66

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Bacteria (83.478 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere
(11.304 % of family members)
Environment Ontology (ENVO) Unclassified
(60.000 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(77.391 % of family members)



 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      


 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 5.88%    β-sheet: 24.51%    Coil/Unstructured: 69.61%
Feature Viewer
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.66
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 115 Family Scaffolds
PF02113Peptidase_S13 2.61
PF03162Y_phosphatase2 1.74
PF13180PDZ_2 0.87
PF00158Sigma54_activat 0.87

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 115 Family Scaffolds
COG2027D-alanyl-D-alanine carboxypeptidaseCell wall/membrane/envelope biogenesis [M] 2.61
COG2365Protein tyrosine/serine phosphatase Oca4Signal transduction mechanisms [T] 1.74


 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms83.48 %
UnclassifiedrootN/A16.52 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000364|INPhiseqgaiiFebDRAFT_101317943Not Available635Open in IMG/M
3300000787|JGI11643J11755_11498760All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium977Open in IMG/M
3300000789|JGI1027J11758_12852055All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium1607Open in IMG/M
3300000891|JGI10214J12806_13580191All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium1073Open in IMG/M
3300000956|JGI10216J12902_124336468All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium510Open in IMG/M
3300002899|JGIcombinedJ43975_10017769All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium1139Open in IMG/M
3300003994|Ga0055435_10130342All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium688Open in IMG/M
3300004157|Ga0062590_100755901All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium886Open in IMG/M
3300004479|Ga0062595_101648425All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium601Open in IMG/M
3300004480|Ga0062592_101912191Not Available584Open in IMG/M
3300005293|Ga0065715_10590874All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium714Open in IMG/M
3300005293|Ga0065715_11054752All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium525Open in IMG/M
3300005295|Ga0065707_10581469All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium699Open in IMG/M
3300005330|Ga0070690_100483952All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium923Open in IMG/M
3300005334|Ga0068869_101175634All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium673Open in IMG/M
3300005340|Ga0070689_100182253All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium1706Open in IMG/M
3300005340|Ga0070689_101046025All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium728Open in IMG/M
3300005344|Ga0070661_101391510All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium590Open in IMG/M
3300005344|Ga0070661_101914860Not Available504Open in IMG/M
3300005345|Ga0070692_10272423All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium1023Open in IMG/M
3300005347|Ga0070668_101494015All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium617Open in IMG/M
3300005441|Ga0070700_101756427Not Available533Open in IMG/M
3300005444|Ga0070694_101517385All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium567Open in IMG/M
3300005507|Ga0074259_10928331Not Available500Open in IMG/M
3300005530|Ga0070679_101402101All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium645Open in IMG/M
3300005546|Ga0070696_101175039Not Available647Open in IMG/M
3300005547|Ga0070693_101582788All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium514Open in IMG/M
3300005549|Ga0070704_102258861All Organisms → cellular organisms → Bacteria → Acidobacteria506Open in IMG/M
3300005563|Ga0068855_101522031All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium686Open in IMG/M
3300005563|Ga0068855_101991021All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium587Open in IMG/M
3300005564|Ga0070664_100928208All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium817Open in IMG/M
3300005577|Ga0068857_101560052All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium644Open in IMG/M
3300005577|Ga0068857_102206277Not Available541Open in IMG/M
3300005616|Ga0068852_102589301Not Available527Open in IMG/M
3300005617|Ga0068859_100069466All Organisms → cellular organisms → Bacteria → Acidobacteria3557Open in IMG/M
3300005617|Ga0068859_100176933All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium2215Open in IMG/M
3300005617|Ga0068859_100194514All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium2112Open in IMG/M
3300005719|Ga0068861_101198575All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium734Open in IMG/M
3300005834|Ga0068851_10541466All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium702Open in IMG/M
3300005841|Ga0068863_100550912All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium1139Open in IMG/M
3300005841|Ga0068863_100645302All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium1050Open in IMG/M
3300005842|Ga0068858_101496713All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium666Open in IMG/M
3300005843|Ga0068860_100292153All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium1595Open in IMG/M
3300005843|Ga0068860_100896627Not Available903Open in IMG/M
3300005844|Ga0068862_100538093All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium1114Open in IMG/M
3300006169|Ga0082029_1473691All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium541Open in IMG/M
3300006237|Ga0097621_101372174Not Available669Open in IMG/M
3300006358|Ga0068871_101415005Not Available656Open in IMG/M
3300006358|Ga0068871_101830030All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium577Open in IMG/M
3300006806|Ga0079220_10216752All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium1119Open in IMG/M
3300006846|Ga0075430_100403504All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium1128Open in IMG/M
3300006852|Ga0075433_11108853Not Available688Open in IMG/M
3300006904|Ga0075424_100707945All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium1075Open in IMG/M
3300009101|Ga0105247_11607349All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium534Open in IMG/M
3300009147|Ga0114129_10713972All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium1287Open in IMG/M
3300009162|Ga0075423_10858181All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium962Open in IMG/M
3300009174|Ga0105241_11746848All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium606Open in IMG/M
3300009174|Ga0105241_11897732All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium584Open in IMG/M
3300009176|Ga0105242_11164600All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium788Open in IMG/M
3300009177|Ga0105248_11937545All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium669Open in IMG/M
3300009177|Ga0105248_12973619All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium540Open in IMG/M
3300009545|Ga0105237_11824977All Organisms → cellular organisms → Bacteria → Acidobacteria616Open in IMG/M
3300009551|Ga0105238_12978698All Organisms → cellular organisms → Bacteria → Acidobacteria509Open in IMG/M
3300009789|Ga0126307_10599250All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium890Open in IMG/M
3300010371|Ga0134125_13093290All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium504Open in IMG/M
3300010373|Ga0134128_11762746All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium681Open in IMG/M
3300010375|Ga0105239_10639956All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium1214Open in IMG/M
3300010397|Ga0134124_10474653All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium1205Open in IMG/M
3300010400|Ga0134122_12364823Not Available578Open in IMG/M
3300010403|Ga0134123_11203918All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium788Open in IMG/M
3300012360|Ga0137375_11111052All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium613Open in IMG/M
3300012986|Ga0164304_10578715All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium834Open in IMG/M
3300013100|Ga0157373_10094374All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium2107Open in IMG/M
3300013100|Ga0157373_10384590All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium1004Open in IMG/M
3300013100|Ga0157373_11375867All Organisms → cellular organisms → Bacteria → Acidobacteria536Open in IMG/M
3300013296|Ga0157374_11210607All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium777Open in IMG/M
3300013296|Ga0157374_11631582All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium669Open in IMG/M
3300014325|Ga0163163_10583399All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium1181Open in IMG/M
3300014325|Ga0163163_11151156All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium838Open in IMG/M
3300014326|Ga0157380_13152816Not Available526Open in IMG/M
3300014745|Ga0157377_10311605All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium1042Open in IMG/M
3300014745|Ga0157377_10563543All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium807Open in IMG/M
3300014968|Ga0157379_11115794All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium756Open in IMG/M
3300014968|Ga0157379_12519807All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium514Open in IMG/M
3300015372|Ga0132256_100968498All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium966Open in IMG/M
3300015373|Ga0132257_100673729All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium1283Open in IMG/M
3300015374|Ga0132255_100427945All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium1933Open in IMG/M
3300015374|Ga0132255_103469951All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium671Open in IMG/M
3300018466|Ga0190268_10780301All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium719Open in IMG/M
3300018476|Ga0190274_12202081All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium648Open in IMG/M
3300019377|Ga0190264_10664443All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium760Open in IMG/M
3300024325|Ga0247678_1044504Not Available712Open in IMG/M
3300025551|Ga0210131_1073769All Organisms → cellular organisms → Bacteria576Open in IMG/M
3300025904|Ga0207647_10522347All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium660Open in IMG/M
3300025911|Ga0207654_10014901All Organisms → cellular organisms → Bacteria → Acidobacteria4023Open in IMG/M
3300025919|Ga0207657_10808945All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium724Open in IMG/M
3300025925|Ga0207650_10845884Not Available776Open in IMG/M
3300025931|Ga0207644_11815078Not Available510Open in IMG/M
3300025933|Ga0207706_10207359All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium1718Open in IMG/M
3300025938|Ga0207704_10633994All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium879Open in IMG/M
3300025949|Ga0207667_10362138All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium1479Open in IMG/M
3300025960|Ga0207651_10913247All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium782Open in IMG/M
3300025960|Ga0207651_12014894All Organisms → cellular organisms → Bacteria → Acidobacteria519Open in IMG/M
3300025961|Ga0207712_11796973Not Available549Open in IMG/M
3300026075|Ga0207708_11122619All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium686Open in IMG/M
3300026118|Ga0207675_100907187All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium898Open in IMG/M
3300026142|Ga0207698_10217243All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_211725Open in IMG/M
3300027787|Ga0209074_10561287All Organisms → cellular organisms → Bacteria → Acidobacteria504Open in IMG/M
3300027907|Ga0207428_10355552All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium1077Open in IMG/M
3300028380|Ga0268265_11756275All Organisms → cellular organisms → Bacteria → Acidobacteria627Open in IMG/M
3300028381|Ga0268264_10691810All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium1012Open in IMG/M
3300031716|Ga0310813_11154416All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium712Open in IMG/M
3300031901|Ga0307406_11113778All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium682Open in IMG/M
3300031944|Ga0310884_11078904Not Available502Open in IMG/M
3300032075|Ga0310890_11250166All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium606Open in IMG/M



 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere11.30%
Corn RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere7.83%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere6.09%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere5.22%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere5.22%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil4.35%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil4.35%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil4.35%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere4.35%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere4.35%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere3.48%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere3.48%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere3.48%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil2.61%
Switchgrass RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere2.61%
Miscanthus RhizosphereHost-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere2.61%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere2.61%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere2.61%
Natural And Restored WetlandsEnvironmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands1.74%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil1.74%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural → Soil1.74%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere1.74%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere1.74%
Switchgrass RhizosphereHost-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere1.74%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil0.87%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil0.87%
Serpentine SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil0.87%
Switchgrass RhizosphereEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere0.87%
Termite NestEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Termite Nest0.87%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil0.87%
Corn RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere0.87%
RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere0.87%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere0.87%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere0.87%

Visualization
Powered by ApexCharts



Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000364Soil microbial communities from Great Prairies - Iowa, Native Prairie soilEnvironmentalOpen in IMG/M
3300000787Soil microbial communities from Great Prairies - Iowa, Continuous Corn soilEnvironmentalOpen in IMG/M
3300000789Soil microbial communities from Great Prairies - Iowa, Native Prairie soilEnvironmentalOpen in IMG/M
3300000891Soil microbial communities from Great Prairies - Wisconsin, Continuous corn soilEnvironmentalOpen in IMG/M
3300000956Soil microbial communities from Great Prairies - Kansas, Native Prairie soilEnvironmentalOpen in IMG/M
3300002899Soil microbial communities from Manhattan, Kansas, USA - Combined assembly of Kansas soil 100-500um Nextera (ASSEMBLY_DATE=20140607)EnvironmentalOpen in IMG/M
3300003994Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqA_D2EnvironmentalOpen in IMG/M
3300004157Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2EnvironmentalOpen in IMG/M
3300004479Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAsEnvironmentalOpen in IMG/M
3300004480Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4EnvironmentalOpen in IMG/M
3300005293Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1Host-AssociatedOpen in IMG/M
3300005295Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3EnvironmentalOpen in IMG/M
3300005330Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaGEnvironmentalOpen in IMG/M
3300005334Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2Host-AssociatedOpen in IMG/M
3300005340Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaGEnvironmentalOpen in IMG/M
3300005344Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaGHost-AssociatedOpen in IMG/M
3300005345Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaGEnvironmentalOpen in IMG/M
3300005347Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaGHost-AssociatedOpen in IMG/M
3300005441Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaGEnvironmentalOpen in IMG/M
3300005444Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaGEnvironmentalOpen in IMG/M
3300005507Arabidopsis rhizosphere microbial communities from the University of North Carolina - sample Mutant cpr5Host-AssociatedOpen in IMG/M
3300005530Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaGEnvironmentalOpen in IMG/M
3300005546Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaGEnvironmentalOpen in IMG/M
3300005547Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaGEnvironmentalOpen in IMG/M
3300005549Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaGEnvironmentalOpen in IMG/M
3300005563Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2Host-AssociatedOpen in IMG/M
3300005564Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaGHost-AssociatedOpen in IMG/M
3300005577Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2Host-AssociatedOpen in IMG/M
3300005616Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2Host-AssociatedOpen in IMG/M
3300005617Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2Host-AssociatedOpen in IMG/M
3300005719Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2Host-AssociatedOpen in IMG/M
3300005834Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2Host-AssociatedOpen in IMG/M
3300005841Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2Host-AssociatedOpen in IMG/M
3300005842Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2Host-AssociatedOpen in IMG/M
3300005843Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2Host-AssociatedOpen in IMG/M
3300005844Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2Host-AssociatedOpen in IMG/M
3300006169Termite nest microbial communities from Madurai, IndiaEnvironmentalOpen in IMG/M
3300006237Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)Host-AssociatedOpen in IMG/M
3300006358Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2Host-AssociatedOpen in IMG/M
3300006806Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100EnvironmentalOpen in IMG/M
3300006846Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4Host-AssociatedOpen in IMG/M
3300006852Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2Host-AssociatedOpen in IMG/M
3300006904Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3Host-AssociatedOpen in IMG/M
3300009101Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaGHost-AssociatedOpen in IMG/M
3300009147Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)Host-AssociatedOpen in IMG/M
3300009162Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2Host-AssociatedOpen in IMG/M
3300009174Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaGHost-AssociatedOpen in IMG/M
3300009176Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaGHost-AssociatedOpen in IMG/M
3300009177Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaGHost-AssociatedOpen in IMG/M
3300009545Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaGHost-AssociatedOpen in IMG/M
3300009551Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaGHost-AssociatedOpen in IMG/M
3300009789Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28EnvironmentalOpen in IMG/M
3300010371Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1EnvironmentalOpen in IMG/M
3300010373Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4EnvironmentalOpen in IMG/M
3300010375Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaGHost-AssociatedOpen in IMG/M
3300010397Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4EnvironmentalOpen in IMG/M
3300010400Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2EnvironmentalOpen in IMG/M
3300010403Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3EnvironmentalOpen in IMG/M
3300012360Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_113_16 metaGEnvironmentalOpen in IMG/M
3300012986Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MGEnvironmentalOpen in IMG/M
3300013100Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaGHost-AssociatedOpen in IMG/M
3300013296Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaGHost-AssociatedOpen in IMG/M
3300014325Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaGHost-AssociatedOpen in IMG/M
3300014326Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaGHost-AssociatedOpen in IMG/M
3300014745Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaGHost-AssociatedOpen in IMG/M
3300014968Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaGHost-AssociatedOpen in IMG/M
3300015372Soil combined assemblyHost-AssociatedOpen in IMG/M
3300015373Combined assembly of cpr5 rhizosphereHost-AssociatedOpen in IMG/M
3300015374Col-0 rhizosphere combined assemblyHost-AssociatedOpen in IMG/M
3300018466Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 TEnvironmentalOpen in IMG/M
3300018476Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 TEnvironmentalOpen in IMG/M
3300019377Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 112 TEnvironmentalOpen in IMG/M
3300024325Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK19EnvironmentalOpen in IMG/M
3300025551Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqA_D2 (SPAdes)EnvironmentalOpen in IMG/M
3300025904Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes)Host-AssociatedOpen in IMG/M
3300025911Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025919Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025925Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025931Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025933Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025938Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300025949Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300025960Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025961Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300026075Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300026118Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026142Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300027787Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter (SPAdes)EnvironmentalOpen in IMG/M
3300027907Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)Host-AssociatedOpen in IMG/M
3300028380Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300028381Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300031716Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3EnvironmentalOpen in IMG/M
3300031901Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2Host-AssociatedOpen in IMG/M
3300031944Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D1EnvironmentalOpen in IMG/M
3300032075Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3EnvironmentalOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap



 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
INPhiseqgaiiFebDRAFT_10131794323300000364SoilNQKATYTCPAGADDITTTDTEVAPSAAKYIVIAVSVTLNEIGTPGSMGYQPRYSVLLCSDVTLRNSKLWGY*
JGI11643J11755_1149876013300000787SoilHYFDRPVTYTAPSNGADITNVSATEVSPSAAKYIVIAVSVTLDAVGTRNTPGYQPGYTVLLCSDVTLRNTELWDY*
JGI1027J11758_1285205513300000789SoilRIDSMNFHYFNQKATYTCPAGADDITTTDTEVAPSAAKYIVIAVSVTLNEIGTPGSMGYQPRYSVLLCSDVTLRNSKLWGY*
JGI10214J12806_1358019113300000891SoilANRIDSMNIHYFDQKVTYQAPPGGSDITNWSDDEVTPANAKYIVIAISVTLDQIGTPGSAGYQPPYSVLLCSDVTLRNSDLWRY*
JGI10216J12902_12433646813300000956SoilTYTAPSNGADITNVSATEVSPSAAKYIVIAVSVTLDAIGTRNTPGYQPGYTVLLCSDVTLRNTELWDY*
JGIcombinedJ43975_1001776923300002899SoilGMNIHYFDQKVTYTAPPGGSDITGVSATEVNPAGAKYIVIAISVTLDAIGTPGQPGYQPPYSVLLCSDVTLRNSDLWSY*
Ga0055435_1013034223300003994Natural And Restored WetlandsYTAASGATDISSPSAAEVSPGAAKYIVLALSVTLDAVGSPGSTGYQPPSRVLLVSDVTLRNSGLSFY*
Ga0062590_10075590123300004157SoilVLANRIDNMTIHYFDRKVTYTAPAGGDDVIDFSSPEVAKENAKYIVIAIAVTLDEVGTAGSPGYHKQYSTLLCSDVVLRNSSLWGY*
Ga0062595_10164842513300004479SoilIHYFDQKVTYTAPSGGTDITGWSATPVDPASAKYIVIAISVTLDAVGTPDSPGYHPPYTVLLCSDVTLRNSDLWNY*
Ga0062592_10191219123300004480SoilVLANRIDGMNIHYFAQKVTYVTPPGGSDITGASAAEVSPASAKYIVIAISVTLDAIGTPGQPGYQPPYSVLLCSDVTLRNSDLWSY*
Ga0065715_1059087413300005293Miscanthus RhizospherePPGGSDITGPSAAEVDPASAKYIVIAISVTLDAIGTPGQPGYQPPYSVLLCSDVTLRNSDLWSY*
Ga0065715_1105475223300005293Miscanthus RhizosphereHYFDQKVTYKALPGAFDISDYPAEVTPDKAKYVVIAIAVTLDQVGTPGTTGYQPSYSVLLCSDVALRNAGLWNY*
Ga0065707_1058146923300005295Switchgrass RhizosphereRHDKYGTGSTVLANRIDSMNIHYFDRKVTYTAPPGGSDITNKSATEVAPENAKYIVIAVSVTLDAVGQPGAPGYQPPYSVLLCSDVALRNADLWIY*
Ga0070690_10048395213300005330Switchgrass RhizosphereYDQKVTYTAPPGGTDITNVSATPVSPSSAKYIVIAVSVTLDAVGQPNTAGYQPGYSVLLCSDVTLRNTDLWSY*
Ga0068869_10117563413300005334Miscanthus RhizosphereQGGADIANASATEVSPSAAKYIVIAVSVTLDAVGTPNTNGYQPPYTVLLCSDVTLRNTELWGY*
Ga0070689_10018225313300005340Switchgrass RhizosphereVSYTAAPGAADISGVSAAEVSPSGAKYIVIAVSVTLDQVGSPGSSGFQPRYSVLLCSDVILRNSDLWKY*
Ga0070689_10104602523300005340Switchgrass RhizosphereDKYGTGSTVLANRIDGMNIHYYDQKVTYTAPPGGTDITNVSATPVSPSSAKYIVIAVSVTLDAVGQPNTAGYQPGYSVLLCSDVTLRNTDLWSY*
Ga0070661_10139151013300005344Corn RhizosphereHDKYGTGSTVLANRIDGMNIHYFGQKVTYVAPPGGSDITGASAAEVSPASAKYIVIAISVTLDAIGTPGQPGYQPPYSVLLCSDVTLRNSDLWSY*
Ga0070661_10191486023300005344Corn RhizosphereDSMNVHYFSDKVSYTAAPGAADISAVSATEVSPSAAKYIVIAVSVTLDQVGSPGSSGFQPRYSVLLCSDVILRNSDLWKY*
Ga0070692_1027242323300005345Corn, Switchgrass And Miscanthus RhizosphereSTVLANRIDGMNIHYYDQKVTYTAPPGGTDITNVSATPVSPSSAKYIVIAVSVTLDAVGQPNTAGYQPGYSVLLCSDVTLRNTDLWSY*
Ga0070668_10149401513300005347Switchgrass RhizosphereRVDSMNIHYFDQPVTYTAPSNGADITNVSASEVSPSAARYIVIAVSVTLDAVGARNTPGYQPGYTVLLCSDVTLRNTELWDY*
Ga0070700_10175642723300005441Corn, Switchgrass And Miscanthus RhizosphereANRIDSMNIHYFGQKVSYTAPPGGSDITNFPAEVAPENSKYIVIAVSVTLDAVGQPGAPGYQPPYSVLLCSDVTLRNADLWIY*
Ga0070694_10151738523300005444Corn, Switchgrass And Miscanthus RhizosphereQKVTYTAAPGGSDISNVSAAEVTPTNAKYVVIAISVTLDAVGEPGSDGYQPPYSVLLCSDVVLRNTGLWSY*
Ga0074259_1092833113300005507Arabidopsis RhizosphereRHDNYGSGSTVLANRIDSMNMHYFSDKVSYTAAPGAADISGVSAAEVSPSAAKYIVIAVSVTLDQVGSPGSTGFQPRYSVLLCSDVILRNSDLWKY*
Ga0070679_10140210113300005530Corn RhizosphereVLANRIDGMNIHYFDQKVTYTAPSGGSDITGVSATEVNPASAKYIVIAISVTLDAIGTPGQAGYQPPYSVLLCSDVTLRNSDLWSY*
Ga0070696_10117503923300005546Corn, Switchgrass And Miscanthus RhizosphereCLPGGFDITDKSEDEVVSKSDAKFIVIAVSVTLDAVGAKGSAGYQPPYSVLLCSDVTLRNNNLWRY*
Ga0070693_10158278813300005547Corn, Switchgrass And Miscanthus RhizosphereGADITNVSASEVSPSAARYIVIAVSVTLDAVGARNTPGYQPGYTVLLCSDVTLRNTELWDY*
Ga0070704_10225886113300005549Corn, Switchgrass And Miscanthus RhizosphereRIDSMNIHYFAQKVTYTAPPLGTDITNPSADEVDDKSKAKYIVIAISVTLDAVGTPKTAGYQPPYSVLLCSDVTLRNTDLWNY*
Ga0068855_10152203123300005563Corn RhizosphereTYTAPSNGADITNVSASEVSPSAARYIVIAVSVTLDAVGARNTPGYQPGYTVLLCSDVTLRNTELWDY*
Ga0068855_10199102123300005563Corn RhizosphereLANRVDSMNIHYFDQPVTYTAPQRGSDIADASAVEVSPSAAKYIVIAVSVTLDAVGTPNTAGYQPPYTVLLCSDVTLRNTELWGY*
Ga0070664_10092820813300005564Corn RhizosphereLANRIDAMNIHYFDQKVTYTAPPGALDIDTPSATPVDPANAKYIVIAIAVTLDAVGDPATDGYQPPYTVLLCSDVDLRNTTLWGY*
Ga0068857_10156005223300005577Corn RhizosphereITNASASEVTDLTKAKYIVIAVSVTLDEVGTFGSAGYQPQYTVLLCSDITLRNSGLWSY*
Ga0068857_10220627713300005577Corn RhizosphereFGTGSTVLANRIDGMSIHYFDQKVTYTAPPGGSDITGVSALEVSPANAKYIVIAISVTLDAVGTPNSAGYQPPYSVLLCSDVTLRNTGLWSY*
Ga0068852_10258930113300005616Corn RhizosphereGTGSTVLANRIDGMNIHYYDQKVTYTAPPGGTDITNVSATPVSPSSAKYIVIAVSVTLDAVGQPNTAGYQPGYSVLLCSDVTLRNTDLWSY*
Ga0068859_10006946613300005617Switchgrass RhizosphereANRIDGMNIHYYDQKVTYTAPPGGTDITNVSATPVSPSSAKYIVIAVSVTLDAVGQPNTAGYQPGYSVLLCSDVTLRNTDLWSY*
Ga0068859_10017693333300005617Switchgrass RhizosphereISNASAAEVAPSAAKYIVIAVSVTLDAVGTPNSAGYQPPYSVLLCSDVALRNTDLWSY*
Ga0068859_10019451413300005617Switchgrass RhizosphereVSYTAPSGGSDITDKSATEVAPENAKYIVIAVSVTLDAVGQPGAPGYQPPYSVLLCSDVALRNTDLWIY*
Ga0068861_10119857513300005719Switchgrass RhizosphereYLARHDKYGTGSTVLANRIDSMNIHYFGQKVSYTAPSGGSDITDKSATEVAPENAKYIVIVVSVTVDAVGQPGAPGYQPPYSVLLCSDVALRNTDLWIY*
Ga0068851_1054146613300005834Corn RhizosphereGASDISNASAAEVAPSAAKYIVIAVSVTLDAVGTPNSAGYQPPYSVLLCSDVALRNTDLWSY*
Ga0068863_10055091213300005841Switchgrass RhizosphereHYFGQKVTYTAPPGGADITGVSAVEVDPAKAKYIVIAISVTLDAIGTPGQPGYQPPYSVLLCSDVTLRNSDLWSY*
Ga0068863_10064530223300005841Switchgrass RhizosphereHDKFGTGSTVLANRIDGMNIHYFGQKVSYVAPPGGSDITGASAAEVSPASAKYIVIAISVTLDAIGTPGQPGYQPPYSVLLCSDVTLRNSDLWSY*
Ga0068858_10149671313300005842Switchgrass RhizosphereLANRIDGMSIHYFDQKVTYVAPPGGSDISGASAAEVSPSSAKYIVIAVSVTLDAVGQPGSTGYQPPYSVLLCSDVTLRNTDLWSY*
Ga0068860_10029215323300005843Switchgrass RhizosphereIDSMNLHYFAQKVTYDANPGASDISNASAAEVAPSAAKYIVIAVSVTLDAVGTPNSAGYQPPYSVLLCSDVALRNTDLWSY*
Ga0068860_10089662723300005843Switchgrass RhizosphereNFHYFDQKVTYTALPGDRDIDPTSVSAAEVTDLTKAKYIVIAVSVTLDEVGTRGSTGYQPSYSVLLCSDVMLRNTQLWNY*
Ga0068862_10053809323300005844Switchgrass RhizosphereIDSMNIHYFGQKVSYTAPPGGSDITNFPAEVAPENSKYIVIAVSVTLDAVGQPGAPGYQPPYSVLLCSDVTLRNADLWIY*
Ga0082029_147369123300006169Termite NestQKVTYVAPPGGSDITGASAAEVNPANAKYIVIAISVTLDAIGTPGQPGYQPPYSVLLCSDVTLRNSDLWSY*
Ga0097621_10137217413300006237Miscanthus RhizosphereRIDGMNIHYFGQKVTYVAPPGGSDITGASAAEVSPASAKYIVIAISVTLDAIGTPGQPGYQPPYSVLLCSDVTLRNSDLWSY*
Ga0068871_10141500513300006358Miscanthus RhizosphereDSMNVHYFSDKVSYTAAPGAADISGVSAAEVSPSGAKYIVIAVSVTLDQVGSPGSSGFQPRYSVLLCSDVILRNSDLWKY*
Ga0068871_10183003023300006358Miscanthus RhizosphereSTVLANRVDSMNIHYFDRPVTYTAPQRGSDIADKSAVEVSPSAAKYIVIAVSVTLDAVGTPNTAGYQPPYTVLLCSDVTLRNTELWGY*
Ga0079220_1021675213300006806Agricultural SoilTAPPGGSDITGASAAEVTPVNAKYIVIAIAVTLDAVGQPGSAGYQPPYSVLLCSDVTLRNTDLWKY*
Ga0075430_10040350413300006846Populus RhizosphereNIYYFDQKVTYTVPSGGTDITNFSAPEVSKQNAKYIVIAISVILDAVGTPGTDGYQPGHSVLLCSDVTLRNWDLRFY*
Ga0075433_1110885323300006852Populus RhizospherePPKGADITNPSVAEVADLTKAKYIVIAVSVTLDEVGTPGSAGYQPKYSVLLCSDVMLRNKQLWNY*
Ga0075424_10070794523300006904Populus RhizosphereIDGMNIHYFDQKVTYTAPPGGLDIENKSALEVAPAQAKYIVIAIAVTLDEVGSTGSEGHQKQYSVLLCSDVTLRNWNLRSY*
Ga0105247_1160734913300009101Switchgrass RhizosphereITDISATPVSPENAKYIVITIAVTLDPVGKEGSPGYQPPYTVLLCSDVTLRNTSLWSY*
Ga0114129_1071397223300009147Populus RhizosphereVLANRIDNLNIHYFDQKVTYTAAPGDSDISDKSATEVAPSAAKYIVIAVSVTLDAVGTPGTPGYQPPYSVLICSDVTLRNSDLWSY*
Ga0075423_1085818123300009162Populus RhizosphereAPGDDEITNMSAAEVTDKTTAKYIVIAVSVTLDQVGTPGSAGYQPPYSVLLCSDVALRNHDLWSY*
Ga0105241_1174684813300009174Corn RhizosphereYGTGSTVLANRIDGMNIHYYDQKVTYTAPPGGTDITNVSATPVSPSSAKYIVIAVSVTLDAVGQPNTAGYQPGYSVLLCSDVTLRNTDLWSY*
Ga0105241_1189773213300009174Corn RhizospherePSNGADITNVSASEVSPSAARYIVIAVSVTLDAVGARNTPGYQPGYTVLLCSDVTLRNTELWDY*
Ga0105242_1116460013300009176Miscanthus RhizosphereHDKYGTGSTVLANRIDGMNIHYFDQKVTYTAPPAGSDITGASATEVNPAGAKYIVIAISVTLDAIGTPGQPGYQPPYSVLLCSDVTLRNSDLWSY*
Ga0105248_1193754523300009177Switchgrass RhizosphereTYTAPPGGADITNVSAAPVSPSSAKYIVIAVSVTLDAVGQQNTPGYQPAYSVLLCSDVTLRNTELWSY*
Ga0105248_1297361923300009177Switchgrass RhizosphereYYDQKVTYVAPPGGSDITSASAAEVSPSSAKYIVIAVSVTLDAVGQPGSAGYQPPYSVLLCSDVTLRNTDLWSY*
Ga0105237_1182497713300009545Corn RhizosphereVLANRIDGMSIHYFDQKVTYVAPPGGSDISGASAAEVSPSSAKYIVIAVSVTLDAVGQPGSAGYQPPYSVLLCSDVTLRNSGLWSY*
Ga0105238_1297869823300009551Corn RhizosphereGTGSTVLANRIDGMSIHYFDQKVTYTAPAGGADITGASAVEVSPANAKYIVIAISVTLDAVGTPNTPGYQPPYSVLLCSDVTLRNTGLWGY*
Ga0126307_1059925013300009789Serpentine SoilNVHYFGQKVTYTAPPGGADITDVSALEVSPANAKYIVIAVSVTLDAVGAPNTPGYQPPYSVLLCSDVTLRNTDLWSY*
Ga0134125_1309329013300010371Terrestrial SoilPGGSDITNVSAAPVSPSSAKYIVIAVSVTLDAVGQQNTPGYQPGYSVLLCSDVTLRNTDLWSY*
Ga0134128_1176274613300010373Terrestrial SoilTDISNRSVAEVASPTQAKYVVIAIAVTLDEIGKAGSPGYQRSYSVLLCSDVALRNSGLWNY*
Ga0105239_1063995613300010375Corn RhizospherePGGSDITGVSATEVNPASAKYIVIAISVTLDAIGTPGQAGYQPPYSVLLCSDVTLRNSDLWSY*
Ga0134124_1047465313300010397Terrestrial SoilVTYTAPQGGADIANASATEVSPSAAKYIVIAVSVTLDAVGTPNTNGYQPPYTVLLCSDVTLRNTELWGY*
Ga0134122_1236482313300010400Terrestrial SoilTALPGDDDITNLSAAEVTDLTKAKYIVIAVSVTLDEVGTRGSDGYQPSYSVLLCSDVMLRNTQLWNY*
Ga0134123_1120391813300010403Terrestrial SoilHYFAQKVTYVAPPGGSDITGASAAEVSPANAKYIVIAISVTLDAIGTPGQPGYQPPYSVLLCSDVTLRNSDLWSY*
Ga0137375_1111105223300012360Vadose Zone SoilTYTAAPGDDDITNVSAAEVSPGNAKYIVIAISVTLDAVGQPGAPGYQPPYSVLLCSDVMLRNTDLWIY*
Ga0164304_1057871513300012986SoilTAPPGGSDISNVSAAEVTPTSAKYVVIAISVTLDAVGEPGSDGYQPPYSVLLCSDVVLRNTGLWNY*
Ga0157373_1009437413300013100Corn RhizosphereNIHYFDQKVTYTAPAAGSDITNASAAEVSPANAKYIVIAVSVTLDAVGAEGESGYQPRYSVLLCSDVTLRNSGLWSY*
Ga0157373_1038459013300013100Corn RhizosphereTAPSNGADITNVSASEVSPSAARYIVIAVSVTLDAVGARNTPGYQPGYTVLLCSDVTLRNTELWDY*
Ga0157373_1137586713300013100Corn RhizosphereQKVTYTVPSGGAGSDINFLSPQVSKENAKYIVIAISVTLDAVGTPGSDGYQPGHSVLLCSDVTLRNWDLRFY*
Ga0157374_1121060713300013296Miscanthus RhizosphereHYYDQKVTYTSELRGTDISGASATEVSPDQARYIVIAVSVTLNQVGQPGAPGYQPASTVLLCSDVTLRNADLTYY*
Ga0157374_1163158213300013296Miscanthus RhizosphereAPSNGADITNVSASEVSPSAARYIVIAVSVTLDAVGARNTPGYQPGYTVLLCSDVTLRNTELWDY*
Ga0163163_1058339923300014325Switchgrass RhizospherePAGSDITNVSAAEVNPANAKYIVIAISVTLDAIGTPGQPGYQPPYSVLLCSDVTLRNSDLWSY*
Ga0163163_1115115613300014325Switchgrass RhizosphereTYTAPQGGADILNPSATEVAPSAAKYIVIAVSVTLDAVGTPNTSGYQPPYSVLLCSDVTLRNTELWGY*
Ga0157380_1315281613300014326Switchgrass RhizosphereSLNIYYFAQKVTYQCLPGGFDITDKSEDEVVSKSDAKFIVIAVSVTLDAVGAKGSAGYQPPYSVLLCSDVTLRNNNLWRY*
Ga0157377_1031160523300014745Miscanthus RhizosphereIDGMNIHYFGQKVTYVAPPGGSDITGASAAEVSPASAKYIVIAISVTLDAIGTPGQPGYQPPYSVLLCSDVTLRNSDLWSY*
Ga0157377_1056354323300014745Miscanthus RhizospherePPGGSDITGVSATEVNPAGAKYIVIAISVTLDAIGTPGQPGYQPPYSVLLCSDVTLRNSDLWSY*
Ga0157379_1111579413300014968Switchgrass RhizosphereITGPSAAEVNPANARYIVIAISVTLDAIGTPGQPGYQPPYSVLLCSDVTLRNSDLWSY*
Ga0157379_1251980723300014968Switchgrass RhizosphereYFDQKVTYVAPPGGSDISGASAAEVSPSSAKYIVIAVSVTLDAVGQPGSTGYQPPYSVLLCSDVTLRNTDLWSY*
Ga0132256_10096849823300015372Arabidopsis RhizosphereYGSGSTVLANRIDSMNVHYFSDKDSYTAAPGAADISAVSATEVSPSAAKYIVIAVSVTLDQVGSPGSSGFQPRYSVLLCSDVILRNSDLWKY*
Ga0132257_10067372913300015373Arabidopsis RhizosphereDKYGSQSTVLANRVDSMNIHYFDRPVTYDAPARGSDIANASAGEVSPSAAKYIVIAVSVTLDAVGTQNTPGYQPPYTVLLCSDVTLRNTELWDY*
Ga0132255_10042794513300015374Arabidopsis RhizosphereNRIDSMNIHYFGQKVSYTAPPGGSDITNMSATEVAPENAKYIVIAVSVTLDAVGQPGAPGYQPPYSVLLCSDVALRNTDLWIY*
Ga0132255_10346995113300015374Arabidopsis RhizosphereITNVSAAEVSPSAARYIVIAVSVTLDAVGTRNTPGYQPGYTVLLCSDVTLRNTELWDY*
Ga0190268_1078030113300018466SoilANRIDGMNIHYFDQKVTYVTPPGGADITGVSAAEVSPANAKYIVIAISVTLDAVGTPNTPGYQPPYSVLLCSDVTLRNTGLWGY
Ga0190274_1220208123300018476SoilDITGASEAEVSPASAKYIVIAISVTLDPIGTPGQPGYQPPYSVLLCSDVTLRNSDLWSY
Ga0190264_1066444323300019377SoilYFDQRVTYTAPPGGTDITNVSATEVSKAEAKYIVIAISVTLDAVGSPTAPGYQPAYSVLLCSDVALRNTDLWNY
Ga0247678_104450413300024325SoilLVRHDEFLTVGNASTVLANRIDSMNIHYFDQKVTYTAPPGGGDITNASATEVAPASAKYIVIAVSVTLDAVGDPGSDGYQPPYSVLLCSDVALRNTALWGY
Ga0210131_107376923300025551Natural And Restored WetlandsFINVAGNTTYLARFDEYASTAAAQKTVLANRIDSFNIHYFDQRVTYTAASGATDISSPSAAEVSPGAAKYIVLALSVTLDAVGSPGSTGYQPPSRVLLVSDVTLRNSGLSFY
Ga0207647_1052234713300025904Corn RhizospherePQRGSDIADASAVEVSPSAAKYIVIAVSVTLDAVGTPNTAGYQPPYTVLLCSDVTLRNTELWGY
Ga0207654_1001490113300025911Corn RhizosphereLYGTGSTVLANRIDSMTIHYFDQKVTYTAPGGGSDITNASAAEVSPASAKYIVIAVSVTLDGIGSPGEAGYQPPYSVLLCSDVTLRNSGLWSY
Ga0207657_1080894513300025919Corn RhizosphereTGSTVLANRIDSMNIHYFDRQVTYTAPPAGSDITGPSAAEVSPANAKYIVIAISVTLDAVGTPGSDGYQPGHSVLLCSDVTLRNWDLRFY
Ga0207650_1084588423300025925Switchgrass RhizosphereTVLANRIDEMNIHYFAQKVTYTAAPNATDISGASASEVNPAAAKYIVIAVAVRLDAVGTPGSDGYQPEYTVLLCSDVALRNADLWIY
Ga0207644_1181507813300025931Switchgrass RhizosphereLPGDRDIDPTSVSAAEVTDLTKAKYIVIAVSVTLDEVGTRGSTGYQPSYSVLLCSDVMLRNTQLWNY
Ga0207706_1020735933300025933Corn RhizosphereVLANRIDSMNVHYFSDKVSYTAAPGAADISAVSATEVSPSAAKYIVIAVSVTLDQVGSPGSSGFQPRYSVLLCSDVILRNSDLWKY
Ga0207704_1063399413300025938Miscanthus RhizosphereNVHYFSDKVSYTAAPGAADISAVSATEVSPSAAKYIVIAVSVTLDQVGSPGSSGFQPRYSVLLCSDVILRNSDLWKY
Ga0207667_1036213823300025949Corn RhizosphereTYTAPSNGADITNVSASEVSPSAARYIVIAVSVTLDAVGARNTPGYQPGYTVLLCSDVTLRNTELWDY
Ga0207651_1091324713300025960Switchgrass RhizosphereDITNVSASEVSPSAARYIVIAVSVTLDAVGARNTPGYQPGYTVLLCSDVTLRNTELWDY
Ga0207651_1201489413300025960Switchgrass RhizosphereLARHDEFGTGSTVLANRIDGMNIHYFGQKVTYVAPPGGSDITGASAAEVSPASAKYIVIAISVTLDAIGTPGQPGYQPPYSVLLCSDVTLRNSDLWSY
Ga0207712_1179697313300025961Switchgrass RhizosphereGTGSTVLANRIDSMNIHYFGQKVSYTAPSGGSDITDKSATEVAPENAKYIVIAVSVTLDAVGQPGAPGYQPPYSVLLCSDVALRNTDLWIY
Ga0207708_1112261913300026075Corn, Switchgrass And Miscanthus RhizosphereRFGNGSTVLANRIDSMNIHYFGQKVSYTAPPGGSDITNFPAEVAPENSKYIVIAVSVTLDAVGQPGAPGYQPPYSVLLCSDVTLRNADLWIY
Ga0207675_10090718723300026118Switchgrass RhizosphereRIDGMNIHYFGQKVSYTAPPGGSDITNFPAEVAPENSKYIVIAVSVTLDAVGQPGAPGYQPPYSVLLCSDVTLRNADLWIY
Ga0207698_1021724333300026142Corn RhizosphereARHDKYGTGSTVLANRIDGMNIHYYDQKVTYTAPPGGTDITNVSATPVSPSSAKYIVIAVSVTLDAVGQPNTAGYQPGYSVLLCSDVTLRNTDLWSY
Ga0209074_1056128723300027787Agricultural SoilLANRIDSMTIHYFDQKVTYTAPPAGSDITNASAAEVSPPNAKYIVIAISVTLDAVGAQGESGYQPPYSVLLCSDVTLRNSGLWSY
Ga0207428_1035555223300027907Populus RhizosphereLVRHDEFGRGSTVLANRIDSLNIYYFDQKVTYTVPSGGAGSDITDFSSPQVSKENAKYIVIAISVTLDAVGTPGSDGYQPGHSVLLCSDVTLRNWDLRFY
Ga0268265_1175627523300028380Switchgrass RhizosphereFDQKVTYTALPGDRDIDPTSVSAAEVTDLTKAKYIVIAVSVTLDEVGTRGSTGYQPSYSVLLCSDVMLRNTQLWNY
Ga0268264_1069181023300028381Switchgrass RhizosphereTGSTVLANRIDGMNIHYFDQKVTYTAPPAGSDITGASATEVNPAGAKYIVIAISVTLDAIGTPGQPGYQPPYSVLLCSDVTLRNSDLWSY
Ga0310813_1115441613300031716SoilHYFDQPVTYTAPSNGADITNVSASEVSPSAARYIVIAVSVTLDAVGARNTPGYQPGYTVLLCSDVTLRNTELWDY
Ga0307406_1111377813300031901RhizosphereTGSSVLANRVDSLNFHYFDQKVTYTAPPLGMDITNKSAPEVLPQNAKYIVIAVAVTLDAVGTPNTTGYQPPYSVLLCSDVTLRNTDLWNY
Ga0310884_1107890413300031944SoilIDGMNIHYFGQKVTYVAPPGGSDITGASAAEVSPASAKYIVISISVTLDAIGTPGQPGYQPPYSVLLCSDVTLRNSDLWSY
Ga0310890_1125016613300032075SoilYLARHDSFGSGSTVLANRIDSMNIHYFDQKVTYTADPGAADISNVSATEVSPSAATYIVIAVSVTLDAVGTPNTTGYQPPYSVLLCSDVTLRNSGLWGY


 ⦗Top⦘


© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.