Metagenome Family F080448

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F080448
Family Type	Metagenome
Number of Sequences	115
Average Sequence Length	85 residues
Representative Sequence	VVAGSGGGVGGALSSLAGKFIGADAGVMVAALAQIEQTGLSLQQIKNVGSGLISYLEDANPTLAKEILDKVPSLREHLT
Number of Associated Samples	97
Number of Associated Scaffolds	115

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	17.39 %
% of genes near scaffold ends (potentially truncated)	78.26 %
% of genes from short scaffolds (< 2000 bps)	94.78 %
Associated GOLD sequencing projects	88
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.38

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (64.348 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (14.783 % of family members)
Environment Ontology (ENVO)	Unclassified (22.609 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (53.043 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 56.07% β-sheet: 0.00% Coil/Unstructured: 43.93%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.38
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.38
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 115 Family Scaffolds
PF01566	Nramp	6.96
PF00313	CSD	2.61
PF04226	Transgly_assoc	2.61
PF02678	Pirin	1.74
PF02574	S-methyl_trans	0.87
PF00795	CN_hydrolase	0.87
PF09992	NAGPA	0.87
PF14559	TPR_19	0.87
PF02545	Maf	0.87
PF00571	CBS	0.87
PF01370	Epimerase	0.87
PF11075	DUF2780	0.87
PF01741	MscL	0.87

COG ID	Name	Functional Category	% Frequency in 115 Family Scaffolds
COG1914	Mn2+ or Fe2+ transporter, NRAMP family	Inorganic ion transport and metabolism [P]	6.96
COG2261	Uncharacterized membrane protein YeaQ/YmgE, transglycosylase-associated protein family	General function prediction only [R]	2.61
COG1741	Redox-sensitive bicupin YhaK, pirin superfamily	General function prediction only [R]	1.74
COG0424	7-methyl-GTP pyrophosphatase and related NTP pyrophosphatases, Maf/HAM1 superfamily	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.87
COG0646	Methionine synthase I (cobalamin-dependent), methyltransferase domain	Amino acid transport and metabolism [E]	0.87
COG1970	Large-conductance mechanosensitive channel	Cell wall/membrane/envelope biogenesis [M]	0.87
COG2040	Homocysteine/selenocysteine methylase (S-methylmethionine-dependent)	Amino acid transport and metabolism [E]	0.87

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	64.35 %
Unclassified	root	N/A	35.65 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	64.35 %
Unclassified	root	N/A	35.65 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	64.35 %
Unclassified	root	N/A	35.65 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	62.61 %
Unclassified	root	N/A	35.65 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	60.87 %
Unclassified	root	N/A	35.65 %

Name	Rank	Taxonomy	Distribution
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	57.39 %
Unclassified	root	N/A	35.65 %
Alphaproteobacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Alphaproteobacteria incertae sedis	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.65 %
unclassified Hyphomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales	20.00 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	5.22 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	2.61 %
Brucellaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Brucellaceae	1.74 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1.74 %
Thermopetrobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Alphaproteobacteria incertae sedis → Thermopetrobacter	0.87 %
Devosiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Devosiaceae	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.65 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	20.00 %
Mesorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	5.22 %
Brucella/Ochrobactrum group	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Brucellaceae → Brucella/Ochrobactrum group	1.74 %
unclassified Hyphomicrobiaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae	1.74 %
Rhodopseudomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas	1.74 %
Methyloceanibacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	0.87 %
Devosia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Devosiaceae → Devosia	0.87 %
unclassified Thermopetrobacter	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Alphaproteobacteria incertae sedis → Thermopetrobacter → unclassified Thermopetrobacter	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.65 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	20.00 %
unclassified Mesorhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium	5.22 %
Hyphomicrobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1.74 %
unclassified Rhodopseudomonas	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas → unclassified Rhodopseudomonas	1.74 %
Brucella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Brucellaceae → Brucella/Ochrobactrum group → Brucella	1.74 %
unclassified Devosia	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Devosiaceae → Devosia → unclassified Devosia	0.87 %
Thermopetrobacter sp. TC1	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Alphaproteobacteria incertae sedis → Thermopetrobacter → unclassified Thermopetrobacter → Thermopetrobacter sp. TC1	0.87 %
Methyloceanibacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.65 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	20.00 %
Mesorhizobium sp. NBIMC_P2-C4	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium → Mesorhizobium sp. NBIMC_P2-C4	5.22 %
Rhodopseudomonas sp. BR0C11	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas → unclassified Rhodopseudomonas → Rhodopseudomonas sp. BR0C11	1.74 %
Brucella anthropi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Brucellaceae → Brucella/Ochrobactrum group → Brucella → Brucella anthropi	1.74 %
Hyphomicrobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1.74 %
Devosia sp. 66-22	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Devosiaceae → Devosia → unclassified Devosia → Devosia sp. 66-22	0.87 %
Thermopetrobacter sp. TC1	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Alphaproteobacteria incertae sedis → Thermopetrobacter → unclassified Thermopetrobacter → Thermopetrobacter sp. TC1	0.87 %
Methyloceanibacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	0.87 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2170459017\|G14TP7Y01CQWDG	Not Available	634	Open in IMG/M
2170459017\|G14TP7Y01DIE68	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	611	Open in IMG/M
2228664021\|ICCgaii200_c0745663	Not Available	1114	Open in IMG/M
3300000033\|ICChiseqgaiiDRAFT_c2146371	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	521	Open in IMG/M
3300000787\|JGI11643J11755_11780688	Not Available	1239	Open in IMG/M
3300000881\|JGI10215J12807_1374304	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	609	Open in IMG/M
3300000891\|JGI10214J12806_10888480	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1478	Open in IMG/M
3300004479\|Ga0062595_100571804	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	872	Open in IMG/M
3300004480\|Ga0062592_101680303	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	617	Open in IMG/M
3300004633\|Ga0066395_10383853	Not Available	788	Open in IMG/M
3300004643\|Ga0062591_100341795	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1204	Open in IMG/M
3300005146\|Ga0066817_1009304	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	762	Open in IMG/M
3300005162\|Ga0066814_10065176	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium → Mesorhizobium sp. NBIMC_P2-C4	628	Open in IMG/M
3300005338\|Ga0068868_101949770	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium → Mesorhizobium sp. NBIMC_P2-C4	557	Open in IMG/M
3300005339\|Ga0070660_101665924	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium → Mesorhizobium sp. NBIMC_P2-C4	543	Open in IMG/M
3300005341\|Ga0070691_10140723	Not Available	1229	Open in IMG/M
3300005341\|Ga0070691_10669824	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium → Mesorhizobium sp. NBIMC_P2-C4	620	Open in IMG/M
3300005355\|Ga0070671_101731523	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	555	Open in IMG/M
3300005440\|Ga0070705_101200961	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	625	Open in IMG/M
3300005457\|Ga0070662_101242350	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	641	Open in IMG/M
3300005544\|Ga0070686_101675391	Not Available	539	Open in IMG/M
3300005546\|Ga0070696_101600048	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium → Mesorhizobium sp. NBIMC_P2-C4	560	Open in IMG/M
3300005547\|Ga0070693_101302013	Not Available	562	Open in IMG/M
3300005614\|Ga0068856_101972540	Not Available	594	Open in IMG/M
3300005719\|Ga0068861_102627227	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium → Mesorhizobium sp. NBIMC_P2-C4	508	Open in IMG/M
3300005764\|Ga0066903_103763176	Not Available	816	Open in IMG/M
3300005764\|Ga0066903_105245704	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Brucellaceae → Brucella/Ochrobactrum group → Brucella → Brucella anthropi	685	Open in IMG/M
3300005764\|Ga0066903_107997541	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	542	Open in IMG/M
3300005764\|Ga0066903_108129252	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Brucellaceae → Brucella/Ochrobactrum group → Brucella → Brucella anthropi	537	Open in IMG/M
3300006041\|Ga0075023_100536692	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	533	Open in IMG/M
3300006172\|Ga0075018_10394700	All Organisms → cellular organisms → Bacteria	702	Open in IMG/M
3300006358\|Ga0068871_102139631	Not Available	533	Open in IMG/M
3300006845\|Ga0075421_101126119	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	880	Open in IMG/M
3300006852\|Ga0075433_11709475	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	542	Open in IMG/M
3300006854\|Ga0075425_100705432	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1159	Open in IMG/M
3300009098\|Ga0105245_10616253	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1113	Open in IMG/M
3300009147\|Ga0114129_13228806	Not Available	529	Open in IMG/M
3300009553\|Ga0105249_13229527	Not Available	524	Open in IMG/M
3300010358\|Ga0126370_10691121	Not Available	895	Open in IMG/M
3300010359\|Ga0126376_10278361	All Organisms → cellular organisms → Bacteria	1441	Open in IMG/M
3300010359\|Ga0126376_10940316	All Organisms → cellular organisms → Bacteria → Proteobacteria	859	Open in IMG/M
3300010371\|Ga0134125_12743461	Not Available	535	Open in IMG/M
3300010373\|Ga0134128_10805055	Not Available	1041	Open in IMG/M
3300010400\|Ga0134122_12069983	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas → unclassified Rhodopseudomonas → Rhodopseudomonas sp. BR0C11	609	Open in IMG/M
3300010401\|Ga0134121_10314699	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1390	Open in IMG/M
3300010403\|Ga0134123_11212056	Not Available	786	Open in IMG/M
3300012493\|Ga0157355_1028359	Not Available	564	Open in IMG/M
3300012513\|Ga0157326_1005434	Not Available	1348	Open in IMG/M
3300012882\|Ga0157304_1010028	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1045	Open in IMG/M
3300012897\|Ga0157285_10007035	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Devosiaceae → Devosia → unclassified Devosia → Devosia sp. 66-22	2101	Open in IMG/M
3300012913\|Ga0157298_10200960	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	639	Open in IMG/M
3300012955\|Ga0164298_11547664	Not Available	520	Open in IMG/M
3300012957\|Ga0164303_10024646	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	2379	Open in IMG/M
3300012957\|Ga0164303_10142582	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1256	Open in IMG/M
3300012958\|Ga0164299_11034434	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	608	Open in IMG/M
3300012958\|Ga0164299_11072030	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	600	Open in IMG/M
3300012958\|Ga0164299_11331830	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	551	Open in IMG/M
3300012958\|Ga0164299_11676064	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	504	Open in IMG/M
3300012984\|Ga0164309_10825698	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas → unclassified Rhodopseudomonas → Rhodopseudomonas sp. BR0C11	748	Open in IMG/M
3300012984\|Ga0164309_10922640	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	713	Open in IMG/M
3300012985\|Ga0164308_10726749	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	859	Open in IMG/M
3300012986\|Ga0164304_10520570	Not Available	872	Open in IMG/M
3300012987\|Ga0164307_10867519	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	723	Open in IMG/M
3300013306\|Ga0163162_10526353	Not Available	1311	Open in IMG/M
3300014969\|Ga0157376_10964335	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	874	Open in IMG/M
3300015371\|Ga0132258_10196419	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4890	Open in IMG/M
3300015371\|Ga0132258_10662166	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2626	Open in IMG/M
3300015373\|Ga0132257_104558449	Not Available	504	Open in IMG/M
3300015374\|Ga0132255_101890695	Not Available	907	Open in IMG/M
3300015374\|Ga0132255_102157386	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	849	Open in IMG/M
3300016270\|Ga0182036_10512245	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	952	Open in IMG/M
3300016294\|Ga0182041_10074490	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2402	Open in IMG/M
3300016319\|Ga0182033_11671539	Not Available	576	Open in IMG/M
3300016341\|Ga0182035_10458263	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1082	Open in IMG/M
3300016404\|Ga0182037_10138436	All Organisms → cellular organisms → Bacteria → Proteobacteria	1817	Open in IMG/M
3300016404\|Ga0182037_10163396	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1692	Open in IMG/M
3300016422\|Ga0182039_10105545	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2091	Open in IMG/M
3300016422\|Ga0182039_10397136	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1169	Open in IMG/M
3300016422\|Ga0182039_10450265	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1103	Open in IMG/M
3300017821\|Ga0187812_1088622	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1016	Open in IMG/M
3300017973\|Ga0187780_10354073	Not Available	1037	Open in IMG/M
3300018028\|Ga0184608_10464015	Not Available	544	Open in IMG/M
3300019361\|Ga0173482_10071493	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1188	Open in IMG/M
3300021560\|Ga0126371_12959003	Not Available	575	Open in IMG/M
3300023077\|Ga0247802_1053382	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	642	Open in IMG/M
3300025915\|Ga0207693_10362894	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1133	Open in IMG/M
3300025919\|Ga0207657_11379244	Not Available	530	Open in IMG/M
3300025927\|Ga0207687_10644245	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	896	Open in IMG/M
3300025932\|Ga0207690_11600071	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	544	Open in IMG/M
3300025972\|Ga0207668_11243903	Not Available	670	Open in IMG/M
3300026089\|Ga0207648_11095237	Not Available	747	Open in IMG/M
3300026995\|Ga0208761_1026517	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Alphaproteobacteria incertae sedis → Thermopetrobacter → unclassified Thermopetrobacter → Thermopetrobacter sp. TC1	572	Open in IMG/M
3300027821\|Ga0209811_10328426	Not Available	591	Open in IMG/M
3300029987\|Ga0311334_10719998	Not Available	817	Open in IMG/M
3300031226\|Ga0307497_10124997	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1036	Open in IMG/M
3300031719\|Ga0306917_10432560	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1030	Open in IMG/M
3300031720\|Ga0307469_12319732	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	523	Open in IMG/M
3300031879\|Ga0306919_10525044	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	913	Open in IMG/M
3300031910\|Ga0306923_11410308	Not Available	733	Open in IMG/M
3300031941\|Ga0310912_10450150	Not Available	1004	Open in IMG/M
3300031941\|Ga0310912_10786595	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	735	Open in IMG/M
3300031942\|Ga0310916_10985273	Not Available	704	Open in IMG/M
3300031946\|Ga0310910_10143500	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1821	Open in IMG/M
3300031947\|Ga0310909_10406129	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1144	Open in IMG/M
3300032035\|Ga0310911_10200575	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1135	Open in IMG/M
3300032075\|Ga0310890_10679217	Not Available	805	Open in IMG/M
3300032076\|Ga0306924_10687799	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1150	Open in IMG/M
3300032090\|Ga0318518_10295288	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	832	Open in IMG/M
3300032179\|Ga0310889_10087908	Not Available	1300	Open in IMG/M
3300032180\|Ga0307471_101247324	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	907	Open in IMG/M
3300032211\|Ga0310896_10890164	Not Available	515	Open in IMG/M
3300032261\|Ga0306920_101020937	Not Available	1203	Open in IMG/M
3300033289\|Ga0310914_11327888	Not Available	622	Open in IMG/M
3300033551\|Ga0247830_10206998	Not Available	1467	Open in IMG/M
3300033551\|Ga0247830_11308180	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	579	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	75.65%
Host-Associated	Host-Associated	22.61%
Engineered	Engineered	1.74%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	72.17%
Plants	Host-Associated → Plants	22.61%
Aquatic	Environmental → Aquatic	3.48%
Solid Waste	Engineered → Solid Waste	1.74%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	71.30%
Rhizosphere	Host-Associated → Plants → Rhizosphere	12.17%
Rhizoplane	Host-Associated → Plants → Rhizoplane	9.57%
Sediment	Environmental → Aquatic → Sediment	2.61%
Grass	Engineered → Solid Waste → Grass	1.74%
Freshwater	Environmental → Aquatic → Freshwater	0.87%
Peat	Environmental → Terrestrial → Peat	0.87%
Roots	Host-Associated → Plants → Roots	0.87%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	60.00%
Loam	Environmental → Terrestrial → Soil → Loam	10.43%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	6.96%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	5.22%
Soil	Host-Associated → Plants → Rhizosphere → Soil	5.22%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	4.35%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.61%
Composting	Engineered → Solid Waste → Grass → Composting	1.74%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.87%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.87%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.87%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.87%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	26.96%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	20.87%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	6.96%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.09%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	5.22%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	5.22%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	4.35%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	4.35%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	4.35%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	4.35%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	3.48%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.61%
Unclassified	Engineered → Solid Waste → Grass → Composting → Unclassified	1.74%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.87%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.87%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.87%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.87%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	14.78%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	12.17%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	6.96%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	5.22%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	4.35%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	4.35%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	4.35%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	4.35%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	4.35%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	3.48%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	3.48%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	3.48%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.61%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.61%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.74%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.74%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.74%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.74%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.74%
Switchgrass, Maize And Mischanthus Litter	Engineered → Solid Waste → Grass → Composting → Unclassified → Switchgrass, Maize And Mischanthus Litter	1.74%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.87%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.87%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.87%
Unplanted Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Unplanted Soil	0.87%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.87%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.87%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.87%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	0.87%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.87%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.87%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	0.87%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.87%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.87%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.87%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.87%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459017	Litter degradation ZMR4	Engineered	Open in IMG/M
2228664021	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000033	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000787	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000881	Soil microbial communities from Great Prairies - Wisconsin Restored Prairie soil	Environmental	Open in IMG/M
3300000891	Soil microbial communities from Great Prairies - Wisconsin, Continuous corn soil	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005146	Soil and rhizosphere microbial communities from Laval, Canada - mgHAB	Environmental	Open in IMG/M
3300005162	Soil and rhizosphere microbial communities from Laval, Canada - mgLAB	Environmental	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005339	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG	Host-Associated	Open in IMG/M
3300005341	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG	Environmental	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005457	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG	Host-Associated	Open in IMG/M
3300005544	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG	Environmental	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005547	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG	Environmental	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006041	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014	Environmental	Open in IMG/M
3300006172	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014	Environmental	Open in IMG/M
3300006358	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300012493	Unplanted soil (control) microbial communities from North Carolina - M.Soil.10.yng.090610	Environmental	Open in IMG/M
3300012513	Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.2.old.250510	Host-Associated	Open in IMG/M
3300012882	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2	Environmental	Open in IMG/M
3300012897	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S074-202C-1	Environmental	Open in IMG/M
3300012913	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S043-104R-2	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300017821	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_2	Environmental	Open in IMG/M
3300017973	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_20_MG	Environmental	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300019361	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 (version 2)	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300023077	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S076-202R-6	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025919	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025932	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025972	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026089	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026995	Soil and rhizosphere microbial communities from Laval, Canada - mgLAB (SPAdes)	Environmental	Open in IMG/M
3300027821	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300029987	I_Fen_E3 coassembly	Environmental	Open in IMG/M
3300031226	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_S	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032075	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032090	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f22	Environmental	Open in IMG/M
3300032179	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D2	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032211	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D1	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M
3300033551	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day5	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
4ZMR_04281560	2170459017	Switchgrass, Maize And Mischanthus Litter	LAGKFIGADAGVMVAALAQIEQTGLSLQQIKNVGSGLISYLEDANPTLAKEILDKVPSLREHLT
4ZMR_03345700	2170459017	Switchgrass, Maize And Mischanthus Litter	IQQEGNPSKVSQLFSALPGAADLAQKHPVVAGSGGGIGGALSSLAGKFIGADAGVMVAALAQIEQTGLSLQQIKNVGSSLISYLEDANPTLAKEILDKVPSLREHLT
ICCgaii200_07456631	2228664021	Soil	MGGALSSLAGKVIGADAGVMVAAVAQIEQTGLTLEQIKNIGGGLLSYIKDVDPALAKEIGDTVPGLREHLA
ICChiseqgaiiDRAFT_21463711	3300000033	Soil	GGGVGGALSSLAGKFIGADAGVMVAALAQIEQTGLSLQQIKNVGSGLISYLEDANPTLAKEILDKVPSLREHLT*
JGI11643J11755_117806882	3300000787	Soil	MGGALSSXAGKVIGADAGVMVAAVAQIEQTGLTLEQIKNIGGGLLSYIKDVDPALAKEIGDTVPGLREHLA*
JGI10215J12807_13743041	3300000881	Soil	VGGALSSLAGKLIGADAGVMVAALAQIEQTGLSLQQIKNVGSGLISYLEDANPALAKEILDKVPSLREHLT*
JGI10214J12806_108884803	3300000891	Soil	LPGAADLAQKHPVVAGSGGGVGGALSSLAGKLIGADAGVMVAALAQIEQTGLSLQQIKNVGSGLISYLEDANPALAKEILDKVPSLREHLT*
Ga0062595_1005718041	3300004479	Soil	VVAGSGGGVGGALSSLAGKFIGADAGVMVAALAQIEQTGLSLQQIKNVGSGLISYLEDANPTLAKEILDKVPSLREHLT*
Ga0062592_1016803032	3300004480	Soil	FSALPGAADLAQKHPVVAGSGGGVGGALSSLAGKLIGADAGVMVAALAQIEQTGLSLQQIKNVGSGLISCLEDANPALAKEILDKVPSLREHLTRRAVDLMVWRVNYPA
Ga0066395_103838531	3300004633	Tropical Forest Soil	GSGGGVGGALSSLAGKLIGADAGVMVAALAQIEQTGLSLQQIKNVGSGLISYLEDANPALAKEILDKVPSLREHLA*
Ga0062591_1003417951	3300004643	Soil	FSALPGAADLAQKHPVVAGSGGGVGGALSSLAGKLIGADAGVMVAALAQIEQTGLSLQQIKNVGSGLISYLEDANPALAKEILDKVPSLREHLT*
Ga0066817_10093041	3300005146	Soil	MGGALSNLAGKVIGADAGVMVAAVAQIEQTGLKLEQIKNIGGGLLSYIKDVDPALAKEIGDTVPGLREHLA*
Ga0066814_100651761	3300005162	Soil	TQVFDHLPGATELAQKHVVVAGSGTGMGGALSSLAGKVIGTDAGVMVAAVAQIEQTGLTLEQIKNIGGGLLSYIKDVDPALAKEIGDTVPGLREHLA*
Ga0068868_1019497701	3300005338	Miscanthus Rhizosphere	VTQVFDHLPGAADLAQKHVVVAGSGTGMGGALSSLAGKVIGADAGVMVAAVAQIEQTGLTLEQIKNIGGGLLSYIKDVDPALAKEIGDTVPGLREHLA*
Ga0070660_1016659241	3300005339	Corn Rhizosphere	SALPGAADLAQKHPVVAGSGGGVGGALSSLAGKLIGADAGVMVAALAQIEQTGLSLQQIKNVGSGLISYLEEANPALAKEILDKVPSLREHLT*
Ga0070691_101407232	3300005341	Corn, Switchgrass And Miscanthus Rhizosphere	LAGKLIGADAGVMVAALAQIEQTGLSLQQIKNVGSGLISYLEEANPALAKEILDKVPSLREHLT*
Ga0070691_106698241	3300005341	Corn, Switchgrass And Miscanthus Rhizosphere	PGAADLAQKHVVVAGSGTGMGGALSSLAGKVIGADAGVMVAAVAQIEQTGLTLEQIKNIGGGLLSYIKDVDPALAKEIGDTLPGLREHLA*
Ga0070671_1017315232	3300005355	Switchgrass Rhizosphere	SKVAQLFSALPGAADLAQKHPVVAGSGGGVGGALSSLAGKLIGADAGVMVAALAQIEQTGLSLQQIKNVGSGLISYLEEANPALAKEILDKVPSLREHLTRRAVDLMVWRVNYPA
Ga0070705_1012009612	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	GGVGGALSSLAGKLIGADAGVMVAALAQIEQTGLSLQQIKNVGSGLISYLEEANPALAKEILDKVPSLREHLT*
Ga0070662_1012423502	3300005457	Corn Rhizosphere	VAQLFSALPGAADLAQKHPVVAGSGGGVGGALSSLAGKLIGADAGVMVAALAQIEQTGLSLQQIKNVGSGLISYLEEANPALAKEILDKVPSLREHLT*
Ga0070686_1016753912	3300005544	Switchgrass Rhizosphere	VPGSGGGIGGALSGLASKVIGADAGVMVAALAQIEETGLSIQQVKNIGGGLLSYIEDVNPALAKEIFDKIPSLRDHLT
Ga0070696_1016000481	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	NPSTVTQVFDHLPGAADLAQKHVVMAGSATGMGGALSSLAGKVIGADAGIMVAAVAQIEQTGLTLEEIKNIGGGLLSYIKDVDPALAKEIGDTLPGLREHLA*
Ga0070693_1013020132	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	ALSSLASRFIGSDAGVMVAAITQIEQTGLTLQQIKSIGGGLVSYLEDTNPALAKEIIDKVPSFRARLS*
Ga0068856_1019725401	3300005614	Corn Rhizosphere	VPGSGGGIGGALSGLASKVIGADAGVMVAALAQIEETGLSIQQVKNIGGGLLSYIEDVNPALAKEIFDKIPSLRDHLT*
Ga0068861_1026272271	3300005719	Switchgrass Rhizosphere	GALSSLAGKVIGADAGVMVAAVAQIEQTGLTLEQIKNIGGGLLSYIKDVDPALAKEIGDTVPGLREHLA*
Ga0066903_1037631762	3300005764	Tropical Forest Soil	LSVIQQEGNPSKVTQLFSALPGAADLAQKHPVVAGSRGGVGGALSSLAGKFIGADGVMVAALAQIEQTGLSLQQIKNVGSGLISYLEDAN
Ga0066903_1052457041	3300005764	Tropical Forest Soil	IQQEGDPTKVTKLFDLLPGAPELAQKHAVVAGAGSGIGGALSSLAGKFVGADAGLVVAAIAQIEQTGLTLQQAKDVGGGLLSYVSDVDPALAKAIFDKVPGLREHLT*
Ga0066903_1079975411	3300005764	Tropical Forest Soil	GSGGGVGGALSSLAGKFIGADAGVMVAALAQIEQTGLSLQQIKNVGSGLISYLEDANPALAKEILDKVPSLREHLA*
Ga0066903_1081292521	3300005764	Tropical Forest Soil	IQQEGDPTKVTKLFDLLPGAPELAQKHAVVAGAGSGIGGALSSLAGKFVGADAGLVVAAIAQIEQTGLTLQQAKDVGGGLLSYVSDVDPALAKEIFDKVPGLREHLT*
Ga0075023_1005366921	3300006041	Watersheds	LKNTPVVPGSGAGIGGALSGLASKVIGADAGVMVAALAQIEQTGLSMQQVKNIGGGLLSYIEDVNPALAKEIFDKIPRLRDHLT*
Ga0075018_103947003	3300006172	Watersheds	QEGNSSKVAQLFNDLPGAADLAQKHPVASGSGTGVGGALSSLAGKFIGADAGIMVAAVAQIEQTGLSLQQIKNIGGGLLSYIEDANPTLAKEILDKVPSLRDHLT*
Ga0068871_1021396312	3300006358	Miscanthus Rhizosphere	VTQVFDHLPGAADLAQKHVVVAGSATGMGGALSSLAGKVIGADAGVMVAAVAQIEQTGLTLEQIKNIGGGLLSYIKDVDPALAKEIGDTVPGLREHLA*
Ga0075421_1011261191	3300006845	Populus Rhizosphere	AGKVIGADAGVMVAAVAQIEQTGLTLKQIKNIGGGLLSYIKDVDPALAKEIGDTVPGLREHLA*
Ga0075433_117094752	3300006852	Populus Rhizosphere	VGGALSSLAGKLIGADAGVMVAALAQIEQTGLSLQQIKNVGSGLISYLEEANPALAKEILDKVPSLREHLT*
Ga0075425_1007054322	3300006854	Populus Rhizosphere	MGGALSSLAGKVIGADAGVMVAAVAQIEQTGLTLEQIKNIGGGLLSYIKDVDPALAKEIGDTVQGLREHLA*
Ga0105245_106162532	3300009098	Miscanthus Rhizosphere	VTQVFDHLPGAANLAQKHVVVAGSGTGMGGALSSLAGKVIGADAGVMVAAVAQIEQTGLTLEQIKNIGCGLLSYIKDVDPALAKEIGDTVPGLREHLA*
Ga0114129_132288061	3300009147	Populus Rhizosphere	LAGKFIGADAGVMVAALTQIEQTGLSLQQIKNVGSGLISFLEDANPTLAKEILDKVPSLREHLT*
Ga0105249_132295272	3300009553	Switchgrass Rhizosphere	GAADLAQKHVVVAGSGTGMGGALSSLAGKVIGADAGVMVAAVAQIEQTGLTLEQIKNIGGGLLSYIKDVDPALAKEIGDTVPGLREHLA*
Ga0126370_106911211	3300010358	Tropical Forest Soil	KLFDRIPGATELAQKHAVVAGSGSGLGGALSGLAGKFVGANAGIMVAAVAQIEETGVTLQQAKNVGGGLLSYLNDVDPTLAKEILDKVPGLREHLT*
Ga0126376_102783612	3300010359	Tropical Forest Soil	GKFVGANAGIMVAAVAQIEETGLTLQQAKNVGGGLLSYLSDVDPTLAKEILDKVPGLREHLT*
Ga0126376_109403163	3300010359	Tropical Forest Soil	GKLIGADAGVMVAAVAQIEQTGLTLQQIKNIGGGLVSYLEDTNPTLAKEILDKLPSLRDHLA*
Ga0134125_127434611	3300010371	Terrestrial Soil	KHVVVAGSATGMGGALSSLAGKVIGADVMVAAVAQIEQTGLTLEQIKNIGGGLLSYIKDVDPALAKEIGDTVPGLREHLA*
Ga0134128_108050551	3300010373	Terrestrial Soil	GAADLAQKHVVVAGSATGMGGALSSLAGKVIGADAGIMVAAVAQIEQTGLTLEEIKNIGGGLLSYIKDVDPALAKEIGDTLPGLREHLA*
Ga0134122_120699832	3300010400	Terrestrial Soil	VIGADAGVMVAAVAQIEQTGLTLEQIKNIGGGLLSYIKEVDPALANEIGDTLPGLREHLA
Ga0134121_103146991	3300010401	Terrestrial Soil	LSVIQQEGNPSKVAQLFSALPGAADLAQKHPVVAGSGGGVGGALSSLAGKLIGADAGVMVAALAQIEQTGLSLQQIKNVGSGLISYLEEANPALAKEILDKVPSLREHLT*
Ga0134123_112120561	3300010403	Terrestrial Soil	VTQVFDHLPGAADLAQKHVVVAGSGIGMGGALSSLAGKVIGADAGIMVAAVAQIEQTGLTLEQIKNIGGGLLSYIKDVDPALAKEIGDTVPGLREHLA*
Ga0157355_10283592	3300012493	Unplanted Soil	GGALSSLAGKVIGADAGVMVAAVAQIEQTGLKLEQIKNIGGGLLSYIKDIDPALAKELGETVPGLREHLA*
Ga0157326_10054344	3300012513	Arabidopsis Rhizosphere	ADLAQKHVVVAGSGTGMGGALSSLAGKVIGADAGVMVAAVAQIEQTGLKLEQIKNIGGGLLSYIKDIDPALAKELGETVPGLREHLA*
Ga0157304_10100283	3300012882	Soil	GGGVGGALSSLAGKLIGADAGVMVAVLAQIEQTGLSLQQIKNVGSGLISYLEDANPTLAKEILDKVPSLREHLT*
Ga0157285_100070354	3300012897	Soil	GGGVGGALSSLAGKLIGADAGVMVAALAQIEQTGLSLQQIKNVGSGLISCLEDANPALAKEILDKVPSLREHLT*
Ga0157298_102009601	3300012913	Soil	GALSSLAGKLIGADAGVMVAALAQIEQTGLSLQQIKNVGSGLISYLEDANPALAKEILDKVPSLREHLT*
Ga0164298_115476641	3300012955	Soil	QKHPVVAGSGTGMGGALSSLAGKFMGANAGIMVAAMAQIEQTGLSMDQIKNIGGGLLSYIKDADPALAKQIGDAVPALRDHFA*
Ga0164303_100246464	3300012957	Soil	DLAQKHAVVAGSGAGVGGALSSLAGKFMGANAGIMVAAMTQIEQTGLSIDQIKNIGGGLLSYIKDADPALAKQIGDAVPALRDHLA*
Ga0164303_101425822	3300012957	Soil	LSVVQQEGNPSKVVQLFDHLPGAAELAQKHPVVPGSGVGIGGALSGLATKVIGADAGVMVAALAQIEQTGLSMQQVKNIGSGLLSYIEDVNPALAKEIFDKIPSLRDHLA*
Ga0164299_110344342	3300012958	Soil	VAQLFDDIPGAAELAKKYPVVPGSGAGIGGALSGLASKVIGADAGVTVAALAQIEQTGLSIQQVKNIGGGLLSYIEDVNPALAKEIFDKIPSLRDHLT*
Ga0164299_110720302	3300012958	Soil	LLSDFATSGGTVGGALSGLATKIIGADAGVMVAALAQIEQTGLSMQQVKNIGSGLLSYIEDVNPALAKEIFDKIPSLRDHLA*
Ga0164299_113318301	3300012958	Soil	ASKVIGADAGVMVAALAQIEQTGISIQQVKNIDGGILSHIKDVHTALAKEIFDKIPSLRDHLT*
Ga0164299_116760642	3300012958	Soil	KHAVVAGSGTGIGGALSSLAGKVIGADAGVTVAAVAQIEQTGLTLEQIKNIGGGLLSYIKDVDPALAKKIGDTVPGLREHLA*
Ga0164309_108256981	3300012984	Soil	DHLPGAADLAQKHVVVAGSATGMGGALSSLAGKVIGADAGIMVAAVAQIEQTGLTLEEIKNIGGGLLSYIKDVDPALAKEIGDTLPGLREHLA*
Ga0164309_109226403	3300012984	Soil	TSGGTVGGALSGLATKVIGADAGVMVAALAQIEQTGLSMQQVKNIGSGLLSYIEDVNPALAKEIFDKIPSLRDHLA*
Ga0164308_107267491	3300012985	Soil	PSRRGLLSDIATSGGTVGGALSGLATKIIGADAGVMVAALAQIEQTGLSMQQIKNIGSGLLSYIEDVNPALAKEIFDKIPSLRDHLA*
Ga0164304_105205701	3300012986	Soil	LSVVQQEGNPSKVVQLFDHLPGAAELAQKHPVVPGSGVGIGGALSGLATKVIGADAGVMVAALAQIEQTGLSMQQIKNIGSGLLSYIEDVNPALAKEIFDKIPSLRDHLA*
Ga0164307_108675191	3300012987	Soil	LLSDFATSGGTVGGALSGLATKIIGADAGVMVAALAQIEQTGLSMQQIKNIGSGLLSYIEDVNPALAKEIFDKIPSLRDHLA*
Ga0163162_105263531	3300013306	Switchgrass Rhizosphere	EANPSTVTQVFDHLPGAADLAQKHVVVAGSATGMGGALSSLAGKVIGADAGIMVAAVAQIEQTGLTLEEIKNIGGGLLSYIKDVDPALAKEIGDTLPGLREHLA*
Ga0157376_109643352	3300014969	Miscanthus Rhizosphere	VTQVFDHLPGAANLAQKHVVVAGSGTGMGGALSSLAGKVIGADAGVMVAAVAQIEQTGLTLEQIKNIGGGLLSYIKDVDPALAKAIGDTVPALSEHLA*
Ga0132258_1019641913	3300015371	Arabidopsis Rhizosphere	AADLAQKHPVVAGSGGGVGGALSSLAGKFIGADAGVMVAALAQIEQTGLSLQQIKNVGSGLISYLEDVNPTLAKQILDKVPSLREHLT*
Ga0132258_106621664	3300015371	Arabidopsis Rhizosphere	VPGSGGGIGGALSGLASKVIGADAGVMVAALAQIEQTGLSIQQVKNIGGGLLSYIEDVNPALAKEIFDKIPSLRDHLT*
Ga0132257_1045584491	3300015373	Arabidopsis Rhizosphere	VPGSGGGIGGALSGLASKVIGADAGVMVAALAQIDQTGLSIQQDTNIGGGLLSYIEDVNPGLAKEILDRTPSLRYHLT*
Ga0132255_1018906951	3300015374	Arabidopsis Rhizosphere	ALSSLAGKVIGADAGVMVAAVAQIEQTGLTLEQIKNIGGGLLSYIKDVDPALAREIGDTVPGLREHLA*
Ga0132255_1021573861	3300015374	Arabidopsis Rhizosphere	IGVDAGVMVVALALIEQTGLSIQQDTNIGGGLLSYIEDVNPGLAKEILDRTPSLRYHLT*
Ga0182036_105122451	3300016270	Soil	QSSSSGSGSGVGGALPLGRTQGVVVAALAQIEQTGLSLQQIKNVGSGLISYLEDANPTLAKEILDKVPSLREHLT
Ga0182041_100744901	3300016294	Soil	PSKVAQLFSALPGAADLAQKHPVVAGSGGGVGGALSSLAGKFIGADAGVVVAALAQIEQTGLSLQQIKNVGSGLISYLEDANPTLAKEILDKVPSLREHLT
Ga0182033_116715391	3300016319	Soil	GVGGALSGLAGKFIGADAGVVVAALAQIEQTGLSLQQIKNVGSGLISYLEDANPTLAKEILDKVPSLREHLT
Ga0182035_104582631	3300016341	Soil	GGALSGLAGKFIGADAGVVVAALAQIEQTGLSLQQIKNVGSGLISYLEDDNTTLAKEILDKVPSLREHLA
Ga0182037_101384363	3300016404	Soil	VVAGSGGGVGGALSSLAGKYIGADAGVMVAALAQIEQTGLSLQQIKNVGGGLLSYLEDANPTLAKEILDKLPSLREHLT
Ga0182037_101633961	3300016404	Soil	VAQLFSALPGAADLAQKHPVVAGSGGGVGGALSSLAGKLIGADAGVMVAALAQIEQTGLSLQQIKNVGSGLISYLEDANPTLAKEILDEVPSLREHLT
Ga0182039_101055455	3300016422	Soil	VIQQEGNPSKVAQLFSALPGAADLAQKHPVVAGSGGGVGGALSSLAGKFIGADAGVVVAALAQIEQTGLSLQQIKNVGSGLISYLEDANPTLAKEILDKVPSLREHLT
Ga0182039_103971363	3300016422	Soil	LRGRRRRSSKRLGGKFIGADAGVVVAALAQIEQTGLSLQQIKNVGSGLISYLEDANPALAKEILDKVPSLREHLA
Ga0182039_104502651	3300016422	Soil	KVAELFNGLPGAADLAQKHPVVAGSGGGVCGALSSLAGKYIGEDAGVMVAALAQIEQTGLSLQQIKNVGGGLLSYLEDANPTLAKEILDKLPSLREHLT
Ga0187812_10886223	3300017821	Freshwater Sediment	PGSGTGIGGALSSLAGKVIGADAGVMVAALAQIEQTGLSLQQIKNIGGGLLSYIEDVNPVLAKEIFDKIPSLRDHLT
Ga0187780_103540731	3300017973	Tropical Peatland	GAANLAQQHPVVVGSGAGVGGALSGLASKVIGSDAGIIVAALAQIEQTNLSMEQIRNIGSALLSYIKDVNPALAKEVFDRIPSLQKHFA
Ga0184608_104640152	3300018028	Groundwater Sediment	VAGSGTGMGGALSSLAVKVIGADAGVMVAAVTQIEQTGLTLEQIKNIGGGLLSYIKDVDPALAKEISDTVPGLREHLA
Ga0173482_100714931	3300019361	Soil	SALPGAADLAQKHPVVAGSGGGVGGALSSLAGKLIGADAGVMVAVLAQIEQTGLSLQQIKNVGSGLISYLEEANPALAKEILDKVPSLREHLT
Ga0126371_129590031	3300021560	Tropical Forest Soil	GVGGALSSLAGKYIGADAGIMVAALAQIEQTGLSVQQIKNVGGGLMSYLEDANPTLAKEILDKVPSLREHLT
Ga0247802_10533821	3300023077	Soil	VAQLFSALPGAADLAQKHPVVAGSGGGVGGALSSLAGKLIGADAGVMVAALAQIEQTGLSLQQIKNVGSGLISCLEDANPALAKEILDKVPSLREHLT
Ga0207693_103628942	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MALLSFNPEVSADLAGKLMGADAGVMVAALAQIEQTGLSLQQIKNVGSGLISYLEEANPALAKEILDKVPSLREHLT
Ga0207657_113792441	3300025919	Corn Rhizosphere	PRTARSGLLSFNPEVSADLAGKLIGADAGVMVAALAQIEQTGLSLQQIKNVGSGLISYLEEANPALAKEILDKVPSLREHLT
Ga0207687_106442451	3300025927	Miscanthus Rhizosphere	VTQVFDHLPGAANLAQKHVVVAGSGTGMGGALSSLAGKVIGADAGVMVAAVAQIEQTGLTLEQIKNIGGGLLSYIKDVDPALAKEIGDTVPGLREHLA
Ga0207690_116000712	3300025932	Corn Rhizosphere	FFSALPGAADLAQKHPVVAGSGGGVGGALSSLAGKLIGADAGVMVAALAQIEQTGLSLQQIKNVGSGLISYLEDANPALAKEILDKVPSLREHLT
Ga0207668_112439032	3300025972	Switchgrass Rhizosphere	SGTGMGGALSSLAGKVIGADAGVMVAAVAQIEQTGLTLEQIKNIGGGLLSYIKDVDPALAKEIGDTVPGLREHLA
Ga0207648_110952371	3300026089	Miscanthus Rhizosphere	VTQVFDHLPGAADLAQKHVVVAGSATGMGGALSSLAGKVIGADAGIMVAAVAQIEQTGLTLEEIKNIGGGLLSYIKDVDPALAKEIGDTLPGLREHLA
Ga0208761_10265171	3300026995	Soil	TQVFDHLPGATELAQKHVVVAGSGTGMGGALSSLAGKVIGTDAGVMVAAVAQIEQTGLTLEQIKNIGGGLLSYIKDVDPALAKEIGDTVPGLREHLA
Ga0209811_103284262	3300027821	Surface Soil	HVVVAESATGMGGALSSLAGKVIGADAGVMVAAVAQIEQTGLTLEQIKNIGGGLLSYIKDVDPALAKEIGDTVPGLREHLA
Ga0311334_107199981	3300029987	Fen	ARKHAVVAGSGSGMGGALSSLAGKFMGANAGIMVAAMTQIEQTGLSMDQIKNIGGGLLSYIKDADPALAKQIGDAVPALRDHLA
Ga0307497_101249971	3300031226	Soil	EANPSTVTQVFDHLPGAADLAQKHVVVAGSGTGMGGALSSLAGKVIGADAGVMVAAVAQIEQTGLTLEQIKNIGGGLLSYIKDVDPALAKEIGDTVPGLREHLA
Ga0306917_104325601	3300031719	Soil	AGSGIGGALSSLAGKFVGADAGLVVAAIAQIEQTGLTLQQAKNVGGGLLSYVSDVDPALAKEIFDKVPGLREHLT
Ga0307469_123197321	3300031720	Hardwood Forest Soil	QKHAVVAGSGTGMGGALSSLAGKVIGADAGIMVAAVAQIEQTGLTLEQIKNIGGGLLSYIKDVDPALAKEIGDTVPELREHLA
Ga0306919_105250441	3300031879	Soil	SALPGAADLAQKHPVVAGSGGGVGGALSSLAGKFIGADAGVVVAALAQIEQTGLSLQQIKNVGSGLISYLEDANPTLAKEILDKVPSLREHLT
Ga0306923_114103083	3300031910	Soil	GVGGALSSLAGKLIGADAGVMVAALAQIEQTGLSLQQIKNVGSGLISYLEDANPTLAKEILDEVPSLREHLT
Ga0310912_104501501	3300031941	Soil	AQKHPVVAGSGGGVGGALSSLAGKFIGADAGVVVAALAQIEQTGLSLQQIKNVGSGLISYLEDANPTLAKEILDKVPSLREHLA
Ga0310912_107865952	3300031941	Soil	AVGTTLSVIQQEGNSSKVAELFNGLPGAADLAQKHPVVAGSGGGVGGALSSLAGKYIGADAGVMVAALAQIEQTGLSLQQIKNVGGGLLSYLEDANPTLAKEILDKVPSLREHLT
Ga0310916_109852732	3300031942	Soil	GDSTKVTKLFDLLPGASELAQKHAVVAGAGSGIGGALSSLAGKFVGADAGLVVAAIAQIEQTGLTLQQAKDVGGGLLSYVSDVDPALAKEIFDKVPGLREHLT
Ga0310910_101435001	3300031946	Soil	QEGDSTKVTKLFDLLPGASELAQKHAVVAGAGSGIGGALSSLAGKFVGADAGLVVAAIAQIEQTGLTLQQAKDVGGGLLSYVSDVDPALTKEIFDKVPGLREHLT
Ga0310909_104061292	3300031947	Soil	GAADLAQKHPVVAGSGGGVGGALSSLAGKYIGADAGVMVAALAQIEQTGLSLQQIKNVGGGLLSYLEDANPTLAKEILDKLPSLREHLT
Ga0310911_102005753	3300032035	Soil	ALSSLAGKFIGADAGVVVAALAQIEQTGLSLQQIKNVGSGLISYLEDANPTLAKEILDKVPSLREHLT
Ga0310890_106792171	3300032075	Soil	AGSGIGMGGALSSLAGKVIGADAGVMVAAVAQIEQTGLTLEQIKNIGGGLLSYIKDVDPALAKEIGDTVPGLCEHLA
Ga0306924_106877991	3300032076	Soil	RSSKRLGGKFIGADAGVVVAALAQIEQTGLSLQQIKNVGSGLISYLEDANPGLAKEILDKVPSLREHLA
Ga0318518_102952881	3300032090	Soil	KHPVVAGSGGGVGGALSSLAGKFIGADAGVVVAALAQIEQTGLSLQQIKNVGSGVISYLEDANPTLAKEILDKVPSLREHLT
Ga0310889_100879082	3300032179	Soil	LPGAADLAQKHVVVAGSGTGMGGALSSLAGKMIGADAGVMVAAVAQIEQTGLTLEQIKNIGGGLLSYIKDVDPALAKEIGDTVPGLCEHLA
Ga0307471_1012473243	3300032180	Hardwood Forest Soil	AGALSGLATKVIGADAGVMVAALAQIEQTGLSMQQVKNIGSGLLSYIEDVNPALAKEIFDKIPSLRDHLA
Ga0310896_108901641	3300032211	Soil	GTGMGGALSNLAGKVIGADAGVMVAAVAQIEQTGLTLEQIKNIGGGLLSYIKDVDPALAKEIGDTVPGLREHLA
Ga0306920_1010209371	3300032261	Soil	VGGALSSLAGKLIGADAGVMVAALAQIEQTGLSLQQIKNVGSGLISYLEDANPTLAKEILDEVPSLREHLT
Ga0310914_113278881	3300033289	Soil	VTKLFDLLPGASELAQKHAVVAGAGSGIGGALSSLAGKFVGADAGLVVAAIAQIEQTGLTLQQAKDVGGGLLSYVSDVDPALTKEIFDKVPGLREHLT
Ga0247830_102069982	3300033551	Soil	SGTGMGGALSSLAGKMIGADAGVMVAAVAQIEQTGLTLEQIKNIGGGLMSYIKDVDPALAKEIGDTVPGLCEHLA
Ga0247830_113081801	3300033551	Soil	NPSTVTQVFDHLPGAADLAQKHVVVAGSGIGMGGALSSLAGRVIGADAGVMVAAVAQIEQTGLTLEQIKNIGGGLLSYIKDVDPALAKEIGDTVPGLREHLA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F080448

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences