NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F080397

Metagenome Family F080397

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F080397
Family Type Metagenome
Number of Sequences 115
Average Sequence Length 85 residues
Representative Sequence MRVRSILLAAFWVAMFIWVGYNGMQAVSSYFQTNDIAEQAFRDASDKQRQRNPGELVSSDFLADLRTGVLAGARRQGVQLD
Number of Associated Samples 107
Number of Associated Scaffolds 115

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 98.26 %
% of genes from short scaffolds (< 2000 bps) 90.43 %
Associated GOLD sequencing projects 103
AlphaFold2 3D model prediction Yes
3D model pTM-score0.53

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (91.304 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere
(11.304 % of family members)
Environment Ontology (ENVO) Unclassified
(31.304 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(40.870 % of family members)


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Multiple Sequence Alignments

Select alignment to view:      

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: Yes Secondary Structure distribution: α-helix: 61.47%    β-sheet: 0.00%    Coil/Unstructured: 38.53%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.53
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 115 Family Scaffolds
PF05226CHASE2 84.35
PF07238PilZ 4.35
PF00072Response_reg 0.87
PF03330DPBB_1 0.87
PF01494FAD_binding_3 0.87
PF05036SPOR 0.87

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 115 Family Scaffolds
COG4252Extracytoplasmic sensor domain CHASE2 (specificity unknown)Signal transduction mechanisms [T] 84.35
COG06542-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductasesEnergy production and conversion [C] 1.74
COG0578Glycerol-3-phosphate dehydrogenaseEnergy production and conversion [C] 0.87
COG0644Dehydrogenase (flavoprotein)Energy production and conversion [C] 0.87
COG0665Glycine/D-amino acid oxidase (deaminating)Amino acid transport and metabolism [E] 0.87

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms91.30 %
UnclassifiedrootN/A8.70 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
2067725003|GPWSG_F5G3JLY01BHRQNNot Available510Open in IMG/M
3300000574|JGI1357J11328_10196614All Organisms → cellular organisms → Bacteria546Open in IMG/M
3300000881|JGI10215J12807_1355828All Organisms → cellular organisms → Bacteria659Open in IMG/M
3300000891|JGI10214J12806_12095137All Organisms → cellular organisms → Bacteria720Open in IMG/M
3300000891|JGI10214J12806_12328291All Organisms → cellular organisms → Bacteria967Open in IMG/M
3300001545|JGI12630J15595_10072099All Organisms → cellular organisms → Bacteria680Open in IMG/M
3300002121|C687J26615_10130285All Organisms → cellular organisms → Bacteria634Open in IMG/M
3300002459|JGI24751J29686_10062603All Organisms → cellular organisms → Bacteria766Open in IMG/M
3300002907|JGI25613J43889_10143066All Organisms → cellular organisms → Bacteria616Open in IMG/M
3300003349|JGI26129J50193_1008636All Organisms → cellular organisms → Bacteria739Open in IMG/M
3300004024|Ga0055436_10042305All Organisms → cellular organisms → Bacteria1209Open in IMG/M
3300004281|Ga0066397_10013242All Organisms → cellular organisms → Bacteria1107Open in IMG/M
3300005206|Ga0068995_10120544All Organisms → cellular organisms → Bacteria550Open in IMG/M
3300005293|Ga0065715_10564068All Organisms → cellular organisms → Bacteria732Open in IMG/M
3300005356|Ga0070674_100750544All Organisms → cellular organisms → Bacteria838Open in IMG/M
3300005364|Ga0070673_100544512All Organisms → cellular organisms → Bacteria1054Open in IMG/M
3300005438|Ga0070701_10518948All Organisms → cellular organisms → Bacteria776Open in IMG/M
3300005440|Ga0070705_100048443All Organisms → cellular organisms → Bacteria2462Open in IMG/M
3300005440|Ga0070705_100871982All Organisms → cellular organisms → Bacteria722Open in IMG/M
3300005444|Ga0070694_100051220All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Peptococcaceae2786Open in IMG/M
3300005445|Ga0070708_100376589All Organisms → cellular organisms → Bacteria1338Open in IMG/M
3300005445|Ga0070708_100459391All Organisms → cellular organisms → Bacteria1201Open in IMG/M
3300005468|Ga0070707_100085144All Organisms → cellular organisms → Bacteria3055Open in IMG/M
3300005544|Ga0070686_100724445All Organisms → cellular organisms → Bacteria795Open in IMG/M
3300005547|Ga0070693_100073622All Organisms → cellular organisms → Bacteria2018Open in IMG/M
3300005557|Ga0066704_10206334All Organisms → cellular organisms → Bacteria1330Open in IMG/M
3300005578|Ga0068854_101807191All Organisms → cellular organisms → Bacteria560Open in IMG/M
3300005843|Ga0068860_100743927All Organisms → cellular organisms → Bacteria992Open in IMG/M
3300005875|Ga0075293_1048595All Organisms → cellular organisms → Bacteria604Open in IMG/M
3300005876|Ga0075300_1072569All Organisms → cellular organisms → Bacteria521Open in IMG/M
3300005937|Ga0081455_10858891All Organisms → cellular organisms → Bacteria566Open in IMG/M
3300006028|Ga0070717_11659267All Organisms → cellular organisms → Bacteria579Open in IMG/M
3300006041|Ga0075023_100366382All Organisms → cellular organisms → Bacteria614Open in IMG/M
3300006049|Ga0075417_10433920All Organisms → cellular organisms → Bacteria653Open in IMG/M
3300006173|Ga0070716_100792864All Organisms → cellular organisms → Bacteria733Open in IMG/M
3300006354|Ga0075021_10728705All Organisms → cellular organisms → Bacteria638Open in IMG/M
3300006914|Ga0075436_100920041All Organisms → cellular organisms → Bacteria654Open in IMG/M
3300009147|Ga0114129_10136220All Organisms → cellular organisms → Bacteria3369Open in IMG/M
3300009147|Ga0114129_12810880Not Available578Open in IMG/M
3300010159|Ga0099796_10446874All Organisms → cellular organisms → Bacteria574Open in IMG/M
3300010360|Ga0126372_12284848All Organisms → cellular organisms → Bacteria591Open in IMG/M
3300011436|Ga0137458_1139841All Organisms → cellular organisms → Bacteria718Open in IMG/M
3300012035|Ga0137445_1025036All Organisms → cellular organisms → Bacteria1110Open in IMG/M
3300012357|Ga0137384_11265672All Organisms → cellular organisms → Bacteria584Open in IMG/M
3300012359|Ga0137385_11112076All Organisms → cellular organisms → Bacteria650Open in IMG/M
3300012362|Ga0137361_10459277All Organisms → cellular organisms → Bacteria1170Open in IMG/M
3300012362|Ga0137361_11238187All Organisms → cellular organisms → Bacteria670Open in IMG/M
3300012582|Ga0137358_10476491All Organisms → cellular organisms → Bacteria842Open in IMG/M
3300012891|Ga0157305_10047907All Organisms → cellular organisms → Bacteria905Open in IMG/M
3300012927|Ga0137416_10768486All Organisms → cellular organisms → Bacteria850Open in IMG/M
3300012931|Ga0153915_10392124All Organisms → cellular organisms → Bacteria1570Open in IMG/M
3300013297|Ga0157378_12563097Not Available562Open in IMG/M
3300014324|Ga0075352_1119144All Organisms → cellular organisms → Bacteria712Open in IMG/M
3300014884|Ga0180104_1258292All Organisms → cellular organisms → Bacteria518Open in IMG/M
3300015170|Ga0120098_1073359Not Available512Open in IMG/M
3300015261|Ga0182006_1175130All Organisms → cellular organisms → Bacteria717Open in IMG/M
3300015372|Ga0132256_100519718All Organisms → cellular organisms → Bacteria1302Open in IMG/M
3300015373|Ga0132257_103264431All Organisms → cellular organisms → Bacteria591Open in IMG/M
3300017930|Ga0187825_10271086All Organisms → cellular organisms → Bacteria626Open in IMG/M
3300017936|Ga0187821_10053575All Organisms → cellular organisms → Bacteria1448Open in IMG/M
3300018029|Ga0187787_10137326All Organisms → cellular organisms → Bacteria819Open in IMG/M
3300018066|Ga0184617_1215082All Organisms → cellular organisms → Bacteria574Open in IMG/M
3300018070|Ga0184631_10098519All Organisms → cellular organisms → Bacteria1137Open in IMG/M
3300018089|Ga0187774_11475254All Organisms → cellular organisms → Bacteria502Open in IMG/M
3300019878|Ga0193715_1077366All Organisms → cellular organisms → Bacteria693Open in IMG/M
3300019882|Ga0193713_1115951All Organisms → cellular organisms → Bacteria739Open in IMG/M
3300020002|Ga0193730_1014540All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria2249Open in IMG/M
3300020581|Ga0210399_10396361All Organisms → cellular organisms → Bacteria1151Open in IMG/M
3300021081|Ga0210379_10069765All Organisms → cellular organisms → Bacteria1429Open in IMG/M
3300021560|Ga0126371_13707204All Organisms → cellular organisms → Bacteria515Open in IMG/M
3300022756|Ga0222622_10294240All Organisms → cellular organisms → Bacteria1115Open in IMG/M
3300025160|Ga0209109_10424407All Organisms → cellular organisms → Bacteria616Open in IMG/M
3300025165|Ga0209108_10321526All Organisms → cellular organisms → Bacteria773Open in IMG/M
3300025315|Ga0207697_10393391All Organisms → cellular organisms → Bacteria616Open in IMG/M
3300025885|Ga0207653_10453227All Organisms → cellular organisms → Bacteria504Open in IMG/M
3300025893|Ga0207682_10621995Not Available508Open in IMG/M
3300025907|Ga0207645_10008216All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria7301Open in IMG/M
3300025939|Ga0207665_10972497All Organisms → cellular organisms → Bacteria675Open in IMG/M
3300025939|Ga0207665_11462214Not Available543Open in IMG/M
3300025961|Ga0207712_10275631All Organisms → cellular organisms → Bacteria1370Open in IMG/M
3300026095|Ga0207676_10082240All Organisms → cellular organisms → Bacteria2618Open in IMG/M
3300026102|Ga0208914_1045239All Organisms → cellular organisms → Bacteria541Open in IMG/M
3300026320|Ga0209131_1006297All Organisms → cellular organisms → Bacteria → Proteobacteria7600Open in IMG/M
3300026345|Ga0257148_1016959All Organisms → cellular organisms → Bacteria583Open in IMG/M
3300026376|Ga0257167_1057342All Organisms → cellular organisms → Bacteria603Open in IMG/M
3300026469|Ga0257169_1010129All Organisms → cellular organisms → Bacteria1190Open in IMG/M
3300026481|Ga0257155_1019892All Organisms → cellular organisms → Bacteria957Open in IMG/M
3300026496|Ga0257157_1009968All Organisms → cellular organisms → Bacteria1501Open in IMG/M
3300026508|Ga0257161_1024393All Organisms → cellular organisms → Bacteria1168Open in IMG/M
3300026551|Ga0209648_10784983Not Available520Open in IMG/M
3300027424|Ga0209984_1012658All Organisms → cellular organisms → Bacteria1101Open in IMG/M
3300027603|Ga0209331_1163888All Organisms → cellular organisms → Bacteria522Open in IMG/M
(restricted) 3300027799|Ga0233416_10088675All Organisms → cellular organisms → Bacteria1055Open in IMG/M
3300027882|Ga0209590_11022769Not Available514Open in IMG/M
3300027903|Ga0209488_11230624Not Available502Open in IMG/M
3300027909|Ga0209382_10475608All Organisms → cellular organisms → Bacteria1380Open in IMG/M
3300027910|Ga0209583_10412864All Organisms → cellular organisms → Bacteria646Open in IMG/M
3300028380|Ga0268265_12559258Not Available516Open in IMG/M
3300028596|Ga0247821_10874790All Organisms → cellular organisms → Bacteria596Open in IMG/M
3300028803|Ga0307281_10018035All Organisms → cellular organisms → Bacteria2017Open in IMG/M
3300028812|Ga0247825_10968964All Organisms → cellular organisms → Bacteria617Open in IMG/M
3300030606|Ga0299906_10634833All Organisms → cellular organisms → Bacteria807Open in IMG/M
(restricted) 3300031248|Ga0255312_1094303All Organisms → cellular organisms → Bacteria729Open in IMG/M
3300031740|Ga0307468_100287722All Organisms → cellular organisms → Bacteria1184Open in IMG/M
3300031740|Ga0307468_101115107All Organisms → cellular organisms → Bacteria704Open in IMG/M
3300031820|Ga0307473_10076733All Organisms → cellular organisms → Bacteria1698Open in IMG/M
3300031962|Ga0307479_12083245All Organisms → cellular organisms → Bacteria515Open in IMG/M
3300032180|Ga0307471_100884695All Organisms → cellular organisms → Bacteria1060Open in IMG/M
3300032180|Ga0307471_101006082All Organisms → cellular organisms → Bacteria1000Open in IMG/M
3300033480|Ga0316620_12609113All Organisms → cellular organisms → Bacteria502Open in IMG/M
3300033551|Ga0247830_10555512All Organisms → cellular organisms → Bacteria906Open in IMG/M
3300033815|Ga0364946_151062All Organisms → cellular organisms → Bacteria538Open in IMG/M
3300034090|Ga0326723_0025977All Organisms → cellular organisms → Bacteria2410Open in IMG/M
3300034177|Ga0364932_0308511All Organisms → cellular organisms → Bacteria598Open in IMG/M
3300034817|Ga0373948_0033773All Organisms → cellular organisms → Bacteria1043Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere11.30%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil7.83%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil6.09%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil5.22%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil5.22%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil4.35%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere4.35%
SoilEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Soil2.61%
WatershedsEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds2.61%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil2.61%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural → Soil2.61%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere2.61%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere2.61%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment1.74%
Natural And Restored WetlandsEnvironmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands1.74%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment1.74%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil1.74%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil1.74%
Natural And Restored WetlandsEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands1.74%
Rice Paddy SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil1.74%
Tropical PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland1.74%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil1.74%
SedimentEnvironmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment1.74%
Arabidopsis Thaliana RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere1.74%
Corn, Switchgrass And Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere1.74%
Groundwater SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment0.87%
SedimentEnvironmental → Aquatic → Freshwater → Lake → Sediment → Sediment0.87%
Freshwater WetlandsEnvironmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands0.87%
GroundwaterEnvironmental → Aquatic → Freshwater → Groundwater → Contaminated → Groundwater0.87%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment0.87%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil0.87%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil0.87%
Switchgrass RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere0.87%
SoilEnvironmental → Terrestrial → Soil → Loam → Unclassified → Soil0.87%
Sandy SoilEnvironmental → Terrestrial → Soil → Sand → Unclassified → Sandy Soil0.87%
FossillEnvironmental → Terrestrial → Soil → Fossil → Unclassified → Fossill0.87%
Peat SoilEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil0.87%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere0.87%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere0.87%
Corn RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere0.87%
Tabebuia Heterophylla RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere0.87%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere0.87%
RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere0.87%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere0.87%
Rhizosphere SoilHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil0.87%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere0.87%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere0.87%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
2067725003Soil microbial communities from Great Prairies - Wisconsin, Switchgrass soilEnvironmentalOpen in IMG/M
3300000574Subsurface groundwater microbial communities from S. Glens Falls, New York, USA - GMW46 contaminated, 5.4 mEnvironmentalOpen in IMG/M
3300000881Soil microbial communities from Great Prairies - Wisconsin Restored Prairie soilEnvironmentalOpen in IMG/M
3300000891Soil microbial communities from Great Prairies - Wisconsin, Continuous corn soilEnvironmentalOpen in IMG/M
3300001545Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1EnvironmentalOpen in IMG/M
3300002121Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 10_1EnvironmentalOpen in IMG/M
3300002459Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6Host-AssociatedOpen in IMG/M
3300002907Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cmEnvironmentalOpen in IMG/M
3300003349Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Endophyte Co-N S PMHost-AssociatedOpen in IMG/M
3300004024Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqB_D2EnvironmentalOpen in IMG/M
3300004281Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 30 MoBioEnvironmentalOpen in IMG/M
3300005206Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqB_D2EnvironmentalOpen in IMG/M
3300005293Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1Host-AssociatedOpen in IMG/M
3300005356Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaGHost-AssociatedOpen in IMG/M
3300005364Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaGHost-AssociatedOpen in IMG/M
3300005438Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaGEnvironmentalOpen in IMG/M
3300005440Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaGEnvironmentalOpen in IMG/M
3300005444Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaGEnvironmentalOpen in IMG/M
3300005445Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaGEnvironmentalOpen in IMG/M
3300005468Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaGEnvironmentalOpen in IMG/M
3300005544Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaGEnvironmentalOpen in IMG/M
3300005547Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaGEnvironmentalOpen in IMG/M
3300005557Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153EnvironmentalOpen in IMG/M
3300005578Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2Host-AssociatedOpen in IMG/M
3300005843Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2Host-AssociatedOpen in IMG/M
3300005875Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_25C_0N_101EnvironmentalOpen in IMG/M
3300005876Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_25C_80N_401EnvironmentalOpen in IMG/M
3300005937Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1Host-AssociatedOpen in IMG/M
3300006028Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaGEnvironmentalOpen in IMG/M
3300006041Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014EnvironmentalOpen in IMG/M
3300006049Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1Host-AssociatedOpen in IMG/M
3300006173Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaGEnvironmentalOpen in IMG/M
3300006354Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012EnvironmentalOpen in IMG/M
3300006914Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5Host-AssociatedOpen in IMG/M
3300009147Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)Host-AssociatedOpen in IMG/M
3300010159Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3EnvironmentalOpen in IMG/M
3300010360Tropical forest soil microbial communities from Panama - MetaG Plot_6EnvironmentalOpen in IMG/M
3300011436Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT642_2EnvironmentalOpen in IMG/M
3300012035Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT338_2EnvironmentalOpen in IMG/M
3300012357Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaGEnvironmentalOpen in IMG/M
3300012359Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaGEnvironmentalOpen in IMG/M
3300012362Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaGEnvironmentalOpen in IMG/M
3300012582Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaGEnvironmentalOpen in IMG/M
3300012891Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S148-409B-2EnvironmentalOpen in IMG/M
3300012927Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012931Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 3 metaGEnvironmentalOpen in IMG/M
3300013297Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaGHost-AssociatedOpen in IMG/M
3300014324Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_TuleA_D1EnvironmentalOpen in IMG/M
3300014884Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT730_16_1DaEnvironmentalOpen in IMG/M
3300015170Fossil microbial communities from human bone sample from Teposcolula Yucundaa, Mexico - TP48EnvironmentalOpen in IMG/M
3300015261Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaGHost-AssociatedOpen in IMG/M
3300015372Soil combined assemblyHost-AssociatedOpen in IMG/M
3300015373Combined assembly of cpr5 rhizosphereHost-AssociatedOpen in IMG/M
3300017930Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_5EnvironmentalOpen in IMG/M
3300017936Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_1EnvironmentalOpen in IMG/M
3300018029Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_BV01_MP06_20_MGEnvironmentalOpen in IMG/M
3300018066Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_b1EnvironmentalOpen in IMG/M
3300018070Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_90_b1EnvironmentalOpen in IMG/M
3300018089Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_20_MGEnvironmentalOpen in IMG/M
3300019878Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2m2EnvironmentalOpen in IMG/M
3300019882Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H3a2EnvironmentalOpen in IMG/M
3300020002Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1a1EnvironmentalOpen in IMG/M
3300020581Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-MEnvironmentalOpen in IMG/M
3300021081Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32_coex redoEnvironmentalOpen in IMG/M
3300021560Tropical forest soil microbial communities from Panama - MetaG Plot_4EnvironmentalOpen in IMG/M
3300022756Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1EnvironmentalOpen in IMG/M
3300025160Soil microbial communities from Rifle, Colorado, USA - sediment 10ft 2EnvironmentalOpen in IMG/M
3300025165Soil microbial communities from Rifle, Colorado, USA - sediment 10ft 1EnvironmentalOpen in IMG/M
3300025315Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)Host-AssociatedOpen in IMG/M
3300025885Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025893Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025907Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025939Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025961Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300026095Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026102Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_TuleA_D1 (SPAdes)EnvironmentalOpen in IMG/M
3300026320Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm (SPAdes)EnvironmentalOpen in IMG/M
3300026345Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-14-AEnvironmentalOpen in IMG/M
3300026376Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-02-BEnvironmentalOpen in IMG/M
3300026469Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-17-BEnvironmentalOpen in IMG/M
3300026481Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-19-AEnvironmentalOpen in IMG/M
3300026496Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-69-AEnvironmentalOpen in IMG/M
3300026508Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-01-AEnvironmentalOpen in IMG/M
3300026551Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)EnvironmentalOpen in IMG/M
3300027424Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M2 S PM (SPAdes)Host-AssociatedOpen in IMG/M
3300027603Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M3 (SPAdes)EnvironmentalOpen in IMG/M
3300027799 (restricted)Sediment microbial communities from Lake Towuti, South Sulawesi, Indonesia - Sediment_Towuti_2014_0_MGEnvironmentalOpen in IMG/M
3300027882Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027903Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)EnvironmentalOpen in IMG/M
3300027909Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)Host-AssociatedOpen in IMG/M
3300027910Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014 (SPAdes)EnvironmentalOpen in IMG/M
3300028380Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300028596Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glycerol_Day14EnvironmentalOpen in IMG/M
3300028803Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_120EnvironmentalOpen in IMG/M
3300028812Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Vanillin_Day48EnvironmentalOpen in IMG/M
3300030606Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT145D125EnvironmentalOpen in IMG/M
3300031248 (restricted)Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - EtOH5_T0_E5EnvironmentalOpen in IMG/M
3300031740Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05EnvironmentalOpen in IMG/M
3300031820Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515EnvironmentalOpen in IMG/M
3300031962Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515EnvironmentalOpen in IMG/M
3300032180Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515EnvironmentalOpen in IMG/M
3300033480Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D5_BEnvironmentalOpen in IMG/M
3300033551Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day5EnvironmentalOpen in IMG/M
3300033815Sediment microbial communities from East River floodplain, Colorado, United States - 31_s17EnvironmentalOpen in IMG/M
3300034090Peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF00NEnvironmentalOpen in IMG/M
3300034177Sediment microbial communities from East River floodplain, Colorado, United States - 17_j17EnvironmentalOpen in IMG/M
3300034817Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_1Host-AssociatedOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
GPWSG_011934202067725003SoilMRVRPLLLTCFWVAVFLWVGYNGMQAVSSYFRVNDVAEQAFREASDKQRQRNPGEIVSADLMADLRTGLLAGTRRAGLDVDPQSVKIV
JGI1357J11328_1019661423300000574GroundwaterMRVRTIVVGSFWVAVFLWVGYNGMQAIYSYFQTNDLTEQAFTAAWERQRQRNPSELFSAEFLADLRSD
JGI10215J12807_135582813300000881SoilMRVRPLLLTCFWVAVFLWVGYNGMQAVSSYFRVNDVAEQAFREASDKQRQRNPGEIVSADLMADLRTG
JGI10214J12806_1209513713300000891SoilMRVRTIVIASFWVAVFLWVGYNGMQAIYSYFQTNDLTEQAFTAAWERQRQRNPSELFSADFLADLRSGVLVGARR
JGI10214J12806_1232829113300000891SoilMRVRTILLASFWVAIFLWVGYNGMQAIYSYFQTNDLTEQAFTGAWERQRQRNPSDLYSAEFLTDLRSSVLMGARRAGIQVDPASIKVSAEGGLVRVGLSWTYRTE
JGI12630J15595_1007209923300001545Forest SoilMRVRSILLAAFWVAMFIWVGYNGMQAVSSYFQTNDIAEQAFRDASDKQRQRNPGELVSSDFLADLRTGVLAGARRQGVQLD
C687J26615_1013028513300002121SoilMRVRTILLVSFWVAVFLWVGYNGMQAIYSYFQTNDLTEQAFTAAWERQRQRNPSELFSPEFLADLRSGVLVGTRRAGIQVDPASVKVVA
JGI24751J29686_1006260313300002459Corn, Switchgrass And Miscanthus RhizosphereMRVRSILLASFWVALFIWVGYNGMQAVSSYFTTNSITEDAFRDAADRQRQRNPSELFSSDFLADL
JGI25613J43889_1014306623300002907Grasslands SoilMRVRTILLASFWVAIFLWVGYNGMQAIYSYFQTNDLTEQAFTGAWERQRQRNPSDLYSAEFLTDLRSSVLMGARRAG
JGI26129J50193_100863623300003349Arabidopsis Thaliana RhizosphereMRVRPLLLTCFWVAVFLWVGYNGMQAVSSYFRVNDVAEQAFREASDKQRQRNPGEIVSADLMADLRTGLLAGTRRAGLDVDPQSVKIVADGALVRLD
Ga0055436_1004230513300004024Natural And Restored WetlandsMRVRTIVLVSFWVAVFLWVGYNGMQAIYSYFQTNDLTEQAFTAAWERQRQRNPSELFSAEFLTDLRTGVLTGARRAGI
Ga0066397_1001324213300004281Tropical Forest SoilMRVRPLLLTCFWVAVFLWVGYNGMQAVSSYFKVNDVAEQAFRDASDKQRQRNPGELVSSDFMADLRTGLLTGTRRAGLEVDPQSLK
Ga0068995_1012054423300005206Natural And Restored WetlandsMRVRTIVLASFWVAVFLWVGYNGMQAIYSYFQTNDLTEQAFTAAWERQRQRNPSELFSAEFLTDLRTGVLTGARRAGIQVDPASIKVVAEGGL
Ga0065715_1056406823300005293Miscanthus RhizosphereMRVRSLLLAAFWVAVFIWMGYNGMQAVSSYFQTNDVAEQAFRDASDKQRVRNPGEVFSSDFLADVRTGVVAGARRQGVLLDPASLKVTAEGGLI
Ga0070674_10075054413300005356Miscanthus RhizosphereMRVRSILLASFWVALFIWVGYNGMQAVSSYFTTNSITEDAFRDAADRQRQRNPSELFSSDFLAD
Ga0070673_10054451213300005364Switchgrass RhizosphereMRVRSILLASFWVALFIWVGYNGMQAVSSYFTTNSITEDAFRDAADRQRQRNPSELFSSDFLADLRATVLTGARRQGVMVDAPSLKVTAEGGLVK
Ga0070701_1051894813300005438Corn, Switchgrass And Miscanthus RhizosphereMRVRSILLASFWIALFIWVGYNGMQAVSSYFTTNSITEDAFRDAADRQRQRNPSELFSSDFLADLRATVLTGARRQGVMVDAPSLKVTAEGG
Ga0070705_10004844323300005440Corn, Switchgrass And Miscanthus RhizosphereMRVRSILLAAFWVAVFIWVGYNGMQAFSSYFQTNDIAEQAFRDASDKQRQRNPGELFSSDFLADLRAGVLAGARRQGVQLDPSTLKVTAEGGLVRVNLGWTYRTWPLT
Ga0070705_10087198223300005440Corn, Switchgrass And Miscanthus RhizosphereMRVRSLLLAAFWVAVFIWMGYNGMQAVSSYFQTNDVAEQAFRDASDKQRVRNPGEVFSSDFLADVRTGVVAGARR
Ga0070694_10005122013300005444Corn, Switchgrass And Miscanthus RhizosphereMRVRTILLASFWVAIFLWVGYNGMQAIYSYFQTNDLTEQAFTGAWERQRQRNPSDLYSAEFLTDLRSSVLMGARRAGIQVDPASIKVSAEGGLVRVGLSWTYRTEPR
Ga0070708_10037658913300005445Corn, Switchgrass And Miscanthus RhizosphereMRVRTIILVSFWVAVFVWVGYNGMQAISSYFQTNEIAELAFRDASDKQRQRNPGELVSADFIADFRAGIVVGARRGGLELDPQSLKVAAEGGLVRVTVSWTYRTWPLTM
Ga0070708_10045939123300005445Corn, Switchgrass And Miscanthus RhizosphereMRVRSILLAAFWVATFIWVGYNGMQAFSSYFQTNDIAEQAFRDASDKQRQRNPGELFSSD
Ga0070707_10008514433300005468Corn, Switchgrass And Miscanthus RhizosphereMRVRSILLAAFWVAVFIWVGYNGMQAFSSYFQTNDIAEQAFRDASDKQRQRNPGELFSSD
Ga0070686_10072444523300005544Switchgrass RhizosphereMRVRSILLASFWIALFIWVGYNGMQAVSSYFTTNSITEDAFRDAADRQRQRNPSELFSSDFLADLRATVLTGARRQGVMVDAPSLKVTAEGGL
Ga0070693_10007362213300005547Corn, Switchgrass And Miscanthus RhizosphereMRVRTILLASFWVAIFLWVGYNGMQAIYSYFQTNDLTEQAFTGAWERQRQRNPSDLYSAEFLTDLRSSVLM
Ga0066704_1020633423300005557SoilMRVRSILLAAFWVAMFVWVGYNGMQAVSSYFQTNDVAEQAFRDASDKQRQRNPGEVFSSDFLADLRTGVLAGARR
Ga0068854_10180719113300005578Corn RhizosphereMRVRPLLLTCFWVAVFLWVGYNGMQAVSSYFRVNDVAEQAFREASDKQRQRNPGEIVSADLMADLRTGLLAGTRRAGLDVDPQSVKIVADGALV
Ga0068860_10074392713300005843Switchgrass RhizosphereMRVRTILLASFWVALFLWVGYNGMQAIYSYFQTNDLTEQAFQAAWERQRQRNPSELFSAEFMADLRSSVLMGTRRAGI
Ga0075293_104859523300005875Rice Paddy SoilMRIRSILVVAFWGAAFIWIAYNGMQAVSSYFQTNDMAEQAFRDASEKQRQRNPGELFSSDFLADLRTGVLAGARRQGLQLDASSVKVTAEGGLVQLSVNWTYRTWPLT
Ga0075300_107256913300005876Rice Paddy SoilMRVRPLLLAFFWVAVFIWVGYNGMQAVASYFETNDMAEQAFRDASERQRQRAPGEPFSPEFITDLRTGLLAGARKSGIQVDPGSL
Ga0081455_1085889113300005937Tabebuia Heterophylla RhizosphereMRVRPLLLMCFWVAVFLWVGYNGMQAVSSYFKVNDLAEQAFRDASDKQRQRNPGEVVSADLMADLRTGLL
Ga0070717_1165926713300006028Corn, Switchgrass And Miscanthus RhizosphereMRVRSILLAAFWVAMFVWVGYNGMQAVSSYFQTNDVAEQAFRDASDKQRQRNPGELFSSDFLADLR
Ga0075023_10036638223300006041WatershedsMRVRPIILVCFWVAVFIWVGYNGMQAVSSYFQTNDIAEQAFRDASDRQRQRNPGELFSSDFIADLRTGLLAGARRAGLEVD
Ga0075417_1043392023300006049Populus RhizosphereMRVRSLLLAAFWVAVFIWVGYNGMQAVSSYFQTNDVAEQAFRDASDKQRARNPGEVFSSDFIADVRTGVVAGARRQGLLLD
Ga0070716_10079286423300006173Corn, Switchgrass And Miscanthus RhizosphereMRVRSILLAAFWIAMFIWVGYNGMQAISSYFQTNDIAEQAFRDASDKQRQRNPGELVSSEFIVDLRTGVLAGARRQGVQLDP
Ga0075021_1072870523300006354WatershedsMRVRSLLLAAFWVAVFIWVGYNGMQAISTYFQTNEIAELAFRDASDKQRQRNPGELFSSDFIADFRAG
Ga0075436_10092004113300006914Populus RhizosphereMRVRSLLLAAFWVAVFIWVGYNGMQAVSSYFQTNDVAEQAFRDASDKQRVRNPGEVFSSDFLVDVRTGVVAGARRQGVLLDPASLKVTAEGGLIRVSIGWTYR
Ga0114129_1013622043300009147Populus RhizosphereMRVRSILLASFWVALFIWVGYNGMQAVSSYFTTNSITEDAFRDAADRQRQRNPSELFSSDFLADLRATVLTGARGQGVMVDAPSLKVIAEGGLVKVNFGWTYRTWPL
Ga0114129_1281088013300009147Populus RhizosphereMRVRPLLLTCFWVAAFLWVGYNGMQAVSSYFKVNDVAEQAFRDASDKQRQRNPGELVSSDFMADLRTGLLTGTRRAGLEVDPQSLKVAADGALVRVDLSWTYRTEPLNI
Ga0099796_1044687413300010159Vadose Zone SoilMRVRSILLAAFWVAMFIWVGYNGMQAVSSYFQTNDIAEQAFRDASDKQRQRNPGELVSSDFLADLRTGVLAGA
Ga0126372_1228484813300010360Tropical Forest SoilMRIRTIIIVSFWVAVFIWVGYNGMQAVYTYFQTNDVADQAFRDAADRQRQRNPGELFSSDFVADLRTGMITGARRAGLQVDPQSLKVVAEG
Ga0137458_113984113300011436SoilMRVRTILLASFWVAVFLWVGYNGMQAIYSYFQTNDLTEQAFTGAWERQRQRNASDLYSAEFLTDLRSSVLMSARRAGIQVDPASIKVVADSGLVRVALSWTYRTE
Ga0137445_102503623300012035SoilMRVRTIVVASFWVAVFLWVGYNGMQAIYSYFQTNDLTEQAFTAAWERQRQRNPSELFSADFLADLRSGVLMGARRAGVQV
Ga0137384_1126567213300012357Vadose Zone SoilMRVRSILLAAFWVAMFVWVGYNGMQAVSSYFQTNDVAEQAFRDASDKQRQRNPGEVFSSDFLADLRTGVLAGARRQGVLLDPASLKVTAEGGLVRVNLGW
Ga0137385_1111207613300012359Vadose Zone SoilMRVRSILLAAFWVAMFVWVGYNGMQAVSSYFQTNDVAEQAFRDASDKQRQRNPGEVFSSDFLADLRTGV
Ga0137361_1045927713300012362Vadose Zone SoilMRVRSILLAAFWVAMFIWVGYNGMQAFSSYFQTNDIAEQAFRDASDKQRQRNPGELFSSDFLADLRAGVLAGARRQGVLLDPASLKVTAEGGLVRVNLGWTYRTWPLTV
Ga0137361_1123818713300012362Vadose Zone SoilMRVRSILLAAFWVAMFVWVGYNGMQAVSSYFQTNDVAEQAFRDASDKQRQRNPGEVFSSDFLADLRTGVLAGARRQGVLLDPASLKVTAEGGLVRVNLGWTYRTWPLTV
Ga0137358_1047649113300012582Vadose Zone SoilMRVRSILLAAFWVAMFIWVGYNGMQAFSSYFQTNDIAEQAFRDASDKQRQRNPGELVSSDFLADLR
Ga0157305_1004790723300012891SoilMRVRPLLLTCFWVAVFLWVGYNGMQAVSSYFRVNDVAEQAFREASDKQRQRNPGEIVSADLMADLRTGLLAGTRRAGL
Ga0137416_1076848613300012927Vadose Zone SoilMRVRSILLAAFWVAMFIWVGYNGMQAFSSYFQTNDIAEQAFRDASDKQRQRNPGELVSSEFIADLRTGVLAGARRQGVQLDPATLKVAAEGGLVRVNLGWTYRTW
Ga0153915_1039212413300012931Freshwater WetlandsMRVRSILLVAFWAAAFIWIAYNGMQAVSSYFQTNDMAEQAFRDASEKQRQRNPGELISSDFLADLRAGVLAGA
Ga0157378_1256309713300013297Miscanthus RhizosphereMRVRSILLAAFWVTMFIWVGYNGMQAVSSYFQTNDIAEQAFRDASDKQRQRNPGEMFSSDFLADLRTGVLAGARRQGVQLDPATLKVSAEGGLVRVNL
Ga0075352_111914423300014324Natural And Restored WetlandsMRVRTIVLASFWVAVFLWVGYNGMQAIYSYFQTNDLTEQAFTAAWERQRQRNPSELFSAEFLTDLRTGVLT
Ga0180104_125829213300014884SoilMRIRTIVVASFWVAVFLWVGYNGMQAIYSYFQTNDLTEQAFTAAWERQRQRNTSEVLSADFLADLRSGVLMGARRAGVQVDPAS
Ga0120098_107335923300015170FossillMRVRTIIVASFWVAVFLWVGYNGMQAIYSYFQTNDLAEQAFTAAWERQRQRNPSEMFSADFLADLRSGVLTGARRAGVQVDPASIKVTAEGGLVRVVLS
Ga0182006_117513013300015261RhizosphereMRVRSILLASFWIALFIWVGYNGMQAVSSYFTTNSITEDAFRDAADRQRQRNPSELFSSDFLADLRATV
Ga0132256_10051971813300015372Arabidopsis RhizosphereMRVRSIVLAAFWVALFLWVGYNGMQAISSYFQTNDVAEQAFREASERQRQRNPGELFSSDFLADIRTTVLAGARQRGVLVDPA
Ga0132257_10326443113300015373Arabidopsis RhizosphereMRVRSILLASFWIALFIWVGYNGMQAVSSYFTTNSITEDAFRDAADRQRQRNPSELFSSDFLADLRATVLTGARRQGVMVDAPSLKVTAEGGLVKVNF
Ga0187825_1027108623300017930Freshwater SedimentMRVRSIVLAAFWVALFLWVGYNGMQAVSSYFQTNDVAEQAFREASERQRQRNPGELFSSDFLADLRTS
Ga0187821_1005357523300017936Freshwater SedimentMRVRSIVLAAFWVGLFLWVGYNGMQAVSSYFQTNDVAEQAFREASERQRQRNPGELFSSDFLADLRTTVLAGARRRGVLVDAASLKVTAE
Ga0187787_1013732623300018029Tropical PeatlandMRVRTLLIVCFWVAVFLWVGYNGMQAVSSYFRANDAAETAFREASEKQRSRNPGELFSSEFLADFRTGILTGTRRAGIALDAQGLKVTAEGG
Ga0184617_121508213300018066Groundwater SedimentMRVRTILVASFWVAVFLWVGYNGMQAIYSYFQTNDLTEQAFQAAWERQRARNPSELFSAEFMADLRSSVLMGTRRAGIEVDPASVKVAPDGGLVRVGLSW
Ga0184631_1009851923300018070Groundwater SedimentMRVRTIVVASFWVAVFLWVGYNGMQTIYSYFQTNDLTEQAFTAAWERQRQRNPSELFSADFLADLRS
Ga0187774_1147525423300018089Tropical PeatlandMRVRTLLIVCFWVAVFLWVGYNGMQAVSSYFRANDAAETAFREASEKQRSRNPGELFSSEFLADFRTGILTGT
Ga0193715_107736623300019878SoilMRVRTILVASFWVAVFLWVGYNGMQAIYSYFQTNDLTEQAFQAAWERQRARNPSELFSAEFMADLRSSV
Ga0193713_111595113300019882SoilMRVRTILLASFWVAIFLWVGYNGMQAIYSYFQTNDLTEQAFTGAWERQRQRNPSDLYSAEFLTDLRSSVLMGARRAGIQVDPASIKV
Ga0193730_101454013300020002SoilMRVRTILVASFWVAVFLWVGYNGMQAIYSYFQTNDLTEQAFQAAWERQRARNPSELFSGEFMADLR
Ga0210399_1039636113300020581SoilMRVRPLVLILFWGTAFIWVGYNGMQAVSSYFQTNDVAEQAFRDASERQRQRNPGELFSSDFIADLRAGVLTGARRAGLEVDPASLKVAAEAGLVRVTVSWTYR
Ga0210379_1006976523300021081Groundwater SedimentMRVRTIVVASFWVAVFLWVGYNGMQAIYSYFQTNDLTEQAFTAAWERQRQRNPSELFSADFLAD
Ga0126371_1370720413300021560Tropical Forest SoilMRIRTIIIASFWVAVFIWVGYNGMQAVYTYFQTNDVADQAFRDAADRQRQRNPGELFSSDFVADLRTGLITGA
Ga0222622_1029424013300022756Groundwater SedimentMRVRTILVASFWVAVFLWVGYNGMQAIYSYFQTNDLTEQAFQAAWERQRARNPSELFSAEFMADLRSSVLMGTRRAGIQVDPASVKVVPEGGLVRVGLSWT
Ga0209109_1042440723300025160SoilMRVRTILLVSFWVAVFLWVGYNGMQAIYSYFQTNDLTEQAFTAAWERQRQRNPSELFSPEFLADLRSG
Ga0209108_1032152623300025165SoilMRVRTILLVSFWVAVFLWVGYNGMQAIYSYFQTNDLTEQAFTAAWERQRQRNPSELFSPEFLADLRSGVLVGTRRAGIQVDPASVKAVADGGLVRVSVSWTY
Ga0207697_1039339123300025315Corn, Switchgrass And Miscanthus RhizosphereMRVRSILLASFWVALFIWVGYNGMQAVSSYFTTNSITEDAFRDAADRQRQRNPSELFSSDFLADLRATVLTGARRQGVMVDAPSLKVTAEGGLVKVNFGWT
Ga0207653_1045322723300025885Corn, Switchgrass And Miscanthus RhizosphereMRVRTILLASFWVAIFLWVGYNGMQAIYSYFQTNDLTEQAFTGAWERQRQRNPSDLYSAEFLTDLRSSVLMGAR
Ga0207682_1062199513300025893Miscanthus RhizosphereMRVRSILLASFWIALFIWVGYNGMQAVSSYFTTNSITEDAFRDAADRQRQRNPSELFSSDFLADLRATVLTGARRQGVMV
Ga0207645_1000821613300025907Miscanthus RhizosphereMRVRSILLASFWVALFIWVGYNGMQAVSSYFTTNSITEDAFRDAADRQRQRNPGELFSSDFLADLRATVLTGARRQGVMVDAPSLK
Ga0207665_1097249723300025939Corn, Switchgrass And Miscanthus RhizosphereMRVRSLLLAAFWVAVFIWMGYNGMQAVSSYFQTNDVAEQAFRDASDKQRVRNPGEVFSSDFLADVRTGVVAGARRQGVLLDPASLKVTAEGGLIRVSLG
Ga0207665_1146221413300025939Corn, Switchgrass And Miscanthus RhizosphereMRVRSILLAAFWIAMFIWVGYNGMQAISSYFQTNDIAEQAFRDASDKQRQRNPGELVSSEFIVDLRTGVLAGARRQGVQLDPATLKVAAEGG
Ga0207712_1027563123300025961Switchgrass RhizosphereMRVRSILLASFWIALFIWVGYNGMQAVSSYFTTNSITEDAFRDAADRQRQRNPSELFSSDFLADLRATVLTGARRQGVMVDAPSLKVTAEGGLVKVKDTVDVKAHVTLTKEKGA
Ga0207676_1008224013300026095Switchgrass RhizosphereMRVRSILLASFWVALFIWVGYNGMQAVSSYFTTNSITEDAFRDAADRQRQRNPSELFSSDFLADLRATVLTGARGQGVMV
Ga0208914_104523923300026102Natural And Restored WetlandsMRVRTIVLASFWVAVFLWVGYNGMQAIYSYFQTNDLTEQAFTAAWERQRQRNPSELFSAEFLTDL
Ga0209131_100629733300026320Grasslands SoilMRVRTILLASFWVAIFLWVGYNGMQAIYSYFQTNDLTEQAFTGAWERQRQRNPSDLYSAEFLTDLRSSVLMGARRAGIQVDPASIKVAA
Ga0257148_101695913300026345SoilMRVRSILLAAFWVAMFIWVGYNGMQAFSSYFQTNDIAEQAFRDASDKQRQRNPGELFSSDFLADLRAGVLAGARRQ
Ga0257167_105734223300026376SoilMRVRSILLAAFWVAMFVWVGYNGMQAVSSYFQTNDVAEQAFRDASDKQRQRNPGEVFSSDFLADLRTGVLAGARRQGVLLDPASLK
Ga0257169_101012913300026469SoilMRVRSILLAAFWVAMFIWVGYNGMQAFSSYFQTNDIAEQAFRDASDKQRQRNPGELFSSDFLADLRA
Ga0257155_101989213300026481SoilMRVRSILLAAFWVAMFIWVGYNGMQAVSSYFQTNDIAEQAFRDASDKQRQRNPGELVSSDFLADLRTGVLAGARRQ
Ga0257157_100996813300026496SoilMRVRSILLAAFWVAMFIWVGYNGMQAVSSYFQTNDIAEQAFRDASDKQRQRNPGELVSSDFLADLRTGVLAGARRQGVQLDPSTLKVSAEGALVRV
Ga0257161_102439323300026508SoilMRVRSILLAAFWVAMFIWVGYNGMQAISSYFQTNDIAEQAFRDASDKQRQRNPGELVSSDFLADLRTGVLAGARRQGVQ
Ga0209648_1078498323300026551Grasslands SoilMRVRSILLAAFWVAMFVWVGYNGMQAVSSYFQTNDVAEQAFRDASDKQRQRNPGEVFSSDFLADLRTGVLAGARRQGVLLDPASLKVTA
Ga0209984_101265823300027424Arabidopsis Thaliana RhizosphereMRVRPLLLTCFWVAVFLWVGYNGMQAVSSYFRVNDVAEQAFREASDKQRQRNPGEIVSADLMADLRTGLLAGTR
Ga0209331_116388813300027603Forest SoilMRVRSILLAAFWVAMFIWVGYNGMQAVSSYFQTNDIAEQAFRDASDKQRQRNPGELVSSDFLADLRTG
(restricted) Ga0233416_1008867523300027799SedimentMRVRTILLVAFWVAVFLWVGYNGMQAIYSYFQTNDLTEQAFTAAWERQRQRNPSELFSAEFLADLRTGVLAGARRAGIRVDPG
Ga0209590_1102276913300027882Vadose Zone SoilMRVRSILLAAFWVAMFVWVGYNGMQAVSSYFQTNDVAEQAFRDASDKQRQRNPGEVFSSDFLADLRTGVLAGARRQGVLLDPASLKVTAEGGLVRVNLGWTYR
Ga0209488_1123062413300027903Vadose Zone SoilMRVRTIVVASFWVAVFLWVGYNGMQAIYSYFQTNDLTEQAFTAAWERQRQRNPSELFSADFLADLRSGVLMGARRAGVQVDPASIKVT
Ga0209382_1047560813300027909Populus RhizosphereMRVRSILLASFWVALFIWVGYNGMQAVSSYFTTNSITEDAFRDAADRQRQRNPSELFSSDFLADLRATVLTGARGQGVMVDAPSLKVIAEGGLV
Ga0209583_1041286423300027910WatershedsMRVRPIILVCFWVAVFIWVGYNGMQAVSSYFQTNDIAEQAFRDASDRQRQRNPGELFSSDFIADLRTGLLAGARRAGLEVDTQSLKVVAEGG
Ga0268265_1255925813300028380Switchgrass RhizosphereMRVRTIVIASFWVAVFLWVGYNGMQAIYSYFQTNDLTEQAFTAAWERQRQRNPSELFSADFLADLRSGVLVGARRAGVQVDPASV
Ga0247821_1087479013300028596SoilMRVRSILLASFWVALFIWVGYNGMQAVSSYFTTNSITEDAFRDAADRQRQRNPSELFSSDFLADLRATVLTGARGQGVMVDAPSLKVIAEG
Ga0307281_1001803513300028803SoilMRVRTIVVASFWVAVFLWVGYNGMQAIYSYFQTNDLTEQAFTAAWERQRQRNPSELFSADFLADLRSGVLMGARRAGVQVDPASIKVSSEGGL
Ga0247825_1096896423300028812SoilMRVRTIILASFWVGIFLWSGYNGMQAIYSYFQTNDLTEQAFTGAWERQRQRNPSDLYSAEFLTDLRSSVLMGARRAGIQVDPASIKVSAEGGLVRVGLSWTYRTE
Ga0299906_1063483323300030606SoilMRVRTIVVASFWVAVFLWVGYNGMQAIYSYFQTNDLTEQAFTAAWERQRQRNPSELFSADFMADLRTGVLTGTRRAGIEVDPASVKVAADGALVRVTLSWTY
(restricted) Ga0255312_109430313300031248Sandy SoilMRVRPIILVCFWVAVFIWIGYNGMQAVSSYFQTNDIAEQAFRDASDRQRQRNPGELFSPDFIVDLRTGLLAGARRAGLEVDAQSLKVAAEGGLVRVTVGWTY
Ga0307468_10028772223300031740Hardwood Forest SoilMRVRTILVASFWVAVFLWVGYNGMQAIYSYFQTNDLTEQAFQAAWERQRARNPSELFSAEFMADLRSSVLMGTRRAGIE
Ga0307468_10111510723300031740Hardwood Forest SoilMRVRPLLLTCFWVAAFLWVGYNGMQAVSSYFKVNDVAEQAFRDASDKQRQRNPGELVSSDFMADLRTGLLTGTRRAGLEVDPQS
Ga0307473_1007673313300031820Hardwood Forest SoilMRVRTIILVSFWVAVFVWVGYNGMQAISSYFQTNEIAELAFRDASDKQRQRNPGELVSADFIADFRAGIVVGARRGGLELDPQSLKVAAEG
Ga0307479_1208324513300031962Hardwood Forest SoilMRVRPLVLILFWGTAFIWVGYNGMQAVSSYFQTNDVAEQAFRDASERQRQRNPGELFSSDFIADLRAGVLTGARR
Ga0307471_10088469513300032180Hardwood Forest SoilMRVRPLLLTCFWVAAFLWVGYNGMQAVSSYFKVNDVAEQAFRDASDKQRQRNPGELVSSDFMADLRTGLLTGTRRAGLEVDPQSLKVAADGALVRVDLSWTYR
Ga0307471_10100608223300032180Hardwood Forest SoilMRVRPLILILFWGTAFIWVGYNGMQAVSSYFQTNDVAEQAFRDASERQRQRNPGELFSSDFIADLRAGVLTGARRAGLEVDPASLKVAAE
Ga0316620_1260911313300033480SoilMRVRSILLVAFWAAAFIWVAYNGMQAVSSYFQTNDMAEQAFRDASEKQRQRNPGELFSSDFLADLRTGV
Ga0247830_1055551223300033551SoilMRVRTILLASFWVAIFLWVGYNGMQAIYSYFQTNDLTEQAFTGAWERQRQRNPSDLYSAEFLTDLRS
Ga0364946_151062_263_5383300033815SedimentMRVRTIVVASFWVAVFLWVGYNGMQAIYSYFQTNDLTEQAFTAAWERQRQRNPSELFSADFLADLRSGVLMGARRAGVQVDPASIKVTAEGG
Ga0326723_0025977_2175_24083300034090Peat SoilMRVRSILLAAFWVALFLWVGYNGMQAVSSYFQTNDVAEQAFREASERQRQRNPGELFSSDFLADLRTSVLAGARRRGV
Ga0364932_0308511_360_5963300034177SedimentMRVRTIILVSFWVAVFIWIGYNGMQAVGSYFQTNDIAEQAFRDASDKQRQRNPSEPFSPDFMADFRTGIVLGARRAGVQ
Ga0373948_0033773_1_2253300034817Rhizosphere SoilMRVRSILLASFWVALFIWVGYNGMQAVSSYFTTNSITEDAFRDAADRQRQRNPSELFSSDFLADLRATVLTGARR

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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