Metagenome / Metatranscriptome Family F080351

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F080351
Family Type	Metagenome / Metatranscriptome
Number of Sequences	115
Average Sequence Length	49 residues
Representative Sequence	MGPSEKTQHAIRRSTRLPLEVPVLVTSLNAAAPFSEQCNTTLVNAHG
Number of Associated Samples	102
Number of Associated Scaffolds	115

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	13.91 %
% of genes near scaffold ends (potentially truncated)	96.52 %
% of genes from short scaffolds (< 2000 bps)	82.61 %
Associated GOLD sequencing projects	92
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.41

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (91.304 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (14.783 % of family members)
Environment Ontology (ENVO)	Unclassified (35.652 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (40.000 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 21.33% Coil/Unstructured: 78.67%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.41
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.41
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 115 Family Scaffolds
PF09360	zf-CDGSH	51.30
PF02698	DUF218	15.65
PF03721	UDPG_MGDP_dh_N	3.48
PF00483	NTP_transferase	1.74
PF01872	RibD_C	1.74
PF13565	HTH_32	0.87
PF11741	AMIN	0.87
PF04191	PEMT	0.87
PF07238	PilZ	0.87
PF07589	PEP-CTERM	0.87
PF11838	ERAP1_C	0.87
PF01928	CYTH	0.87

COG ID	Name	Functional Category	% Frequency in 115 Family Scaffolds
COG1434	Lipid carrier protein ElyC involved in cell wall biogenesis, DUF218 family	Cell wall/membrane/envelope biogenesis [M]	15.65
COG2949	Uncharacterized periplasmic protein SanA, affects membrane permeability for vancomycin	Cell wall/membrane/envelope biogenesis [M]	15.65
COG0240	Glycerol-3-phosphate dehydrogenase	Energy production and conversion [C]	3.48
COG0677	UDP-N-acetyl-D-mannosaminuronate dehydrogenase	Cell wall/membrane/envelope biogenesis [M]	3.48
COG1004	UDP-glucose 6-dehydrogenase	Cell wall/membrane/envelope biogenesis [M]	3.48
COG1250	3-hydroxyacyl-CoA dehydrogenase	Lipid transport and metabolism [I]	3.48
COG1893	Ketopantoate reductase	Coenzyme transport and metabolism [H]	3.48
COG0262	Dihydrofolate reductase	Coenzyme transport and metabolism [H]	1.74
COG1985	Pyrimidine reductase, riboflavin biosynthesis	Coenzyme transport and metabolism [H]	1.74

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	91.30 %
Unclassified	root	N/A	8.70 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	91.30 %
Unclassified	root	N/A	8.70 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	91.30 %
Unclassified	root	N/A	8.70 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	53.91 %
Unclassified	root	N/A	8.70 %

Name	Rank	Taxonomy	Distribution
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	40.87 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	9.57 %
Unclassified	root	N/A	8.70 %

Name	Rank	Taxonomy	Distribution
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	40.87 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	9.57 %
Unclassified	root	N/A	8.70 %

Name	Rank	Taxonomy	Distribution
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	30.43 %
unclassified Terriglobales	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales	10.43 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	9.57 %
Unclassified	root	N/A	8.70 %

Name	Rank	Taxonomy	Distribution
Terriglobales bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Terriglobales bacterium	10.43 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	9.57 %
Unclassified	root	N/A	8.70 %
Candidatus Koribacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	1.74 %

Name	Rank	Taxonomy	Distribution
Terriglobales bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Terriglobales bacterium	10.43 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	9.57 %
Unclassified	root	N/A	8.70 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	1.74 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001471\|JGI12712J15308_10113361	All Organisms → cellular organisms → Bacteria	691	Open in IMG/M
3300001593\|JGI12635J15846_10738635	All Organisms → cellular organisms → Bacteria	566	Open in IMG/M
3300004082\|Ga0062384_100357398	Not Available	927	Open in IMG/M
3300004092\|Ga0062389_100849477	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1094	Open in IMG/M
3300004153\|Ga0063455_101549748	All Organisms → cellular organisms → Bacteria	519	Open in IMG/M
3300004635\|Ga0062388_101123391	All Organisms → cellular organisms → Bacteria	773	Open in IMG/M
3300005559\|Ga0066700_10246610	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1247	Open in IMG/M
3300005598\|Ga0066706_10254854	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1367	Open in IMG/M
3300005610\|Ga0070763_10527078	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Terriglobales bacterium	678	Open in IMG/M
3300006050\|Ga0075028_100905850	All Organisms → cellular organisms → Bacteria	543	Open in IMG/M
3300006059\|Ga0075017_101164607	Not Available	603	Open in IMG/M
3300006086\|Ga0075019_10201232	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1178	Open in IMG/M
3300006162\|Ga0075030_100107345	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2274	Open in IMG/M
3300006162\|Ga0075030_101504526	Not Available	527	Open in IMG/M
3300006174\|Ga0075014_100265714	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	892	Open in IMG/M
3300006174\|Ga0075014_100629311	All Organisms → cellular organisms → Bacteria	617	Open in IMG/M
3300006797\|Ga0066659_10469635	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1003	Open in IMG/M
3300009029\|Ga0066793_10023448	All Organisms → cellular organisms → Bacteria → Acidobacteria	3381	Open in IMG/M
3300009038\|Ga0099829_10334016	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1246	Open in IMG/M
3300009088\|Ga0099830_10070144	All Organisms → cellular organisms → Bacteria → Acidobacteria	2539	Open in IMG/M
3300009143\|Ga0099792_10757114	All Organisms → cellular organisms → Bacteria	633	Open in IMG/M
3300009623\|Ga0116133_1029779	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1348	Open in IMG/M
3300009624\|Ga0116105_1002831	All Organisms → cellular organisms → Bacteria → Acidobacteria	3715	Open in IMG/M
3300009628\|Ga0116125_1260746	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Terriglobales bacterium	504	Open in IMG/M
3300009634\|Ga0116124_1112206	All Organisms → cellular organisms → Bacteria	768	Open in IMG/M
3300009665\|Ga0116135_1239516	All Organisms → cellular organisms → Bacteria	702	Open in IMG/M
3300009762\|Ga0116130_1087871	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	975	Open in IMG/M
3300009762\|Ga0116130_1158510	All Organisms → cellular organisms → Bacteria	714	Open in IMG/M
3300009839\|Ga0116223_10232824	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1116	Open in IMG/M
3300010048\|Ga0126373_10452729	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1318	Open in IMG/M
3300010339\|Ga0074046_10415574	All Organisms → cellular organisms → Bacteria	811	Open in IMG/M
3300010339\|Ga0074046_10921896	Not Available	506	Open in IMG/M
3300010359\|Ga0126376_10573475	All Organisms → cellular organisms → Bacteria	1061	Open in IMG/M
3300011270\|Ga0137391_10498099	All Organisms → cellular organisms → Bacteria	1032	Open in IMG/M
3300011271\|Ga0137393_10721328	All Organisms → cellular organisms → Bacteria	853	Open in IMG/M
3300012189\|Ga0137388_11978775	Not Available	511	Open in IMG/M
3300012359\|Ga0137385_10682406	All Organisms → cellular organisms → Bacteria	859	Open in IMG/M
3300012363\|Ga0137390_12000076	Not Available	505	Open in IMG/M
3300012683\|Ga0137398_10391932	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	945	Open in IMG/M
3300012925\|Ga0137419_10928778	All Organisms → cellular organisms → Bacteria	718	Open in IMG/M
3300014159\|Ga0181530_10183610	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1164	Open in IMG/M
3300014169\|Ga0181531_10089590	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1830	Open in IMG/M
3300014491\|Ga0182014_10333617	All Organisms → cellular organisms → Bacteria	770	Open in IMG/M
3300014502\|Ga0182021_10371329	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1693	Open in IMG/M
3300014638\|Ga0181536_10254430	All Organisms → cellular organisms → Bacteria	839	Open in IMG/M
3300016702\|Ga0181511_1514415	All Organisms → cellular organisms → Bacteria	979	Open in IMG/M
3300017940\|Ga0187853_10081885	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1608	Open in IMG/M
3300017948\|Ga0187847_10746420	Not Available	552	Open in IMG/M
3300018004\|Ga0187865_1097434	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1084	Open in IMG/M
3300018009\|Ga0187884_10033035	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Terriglobales bacterium	2559	Open in IMG/M
3300018012\|Ga0187810_10069244	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1354	Open in IMG/M
3300018014\|Ga0187860_1039389	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2486	Open in IMG/M
3300018014\|Ga0187860_1138243	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1057	Open in IMG/M
3300018019\|Ga0187874_10354857	All Organisms → cellular organisms → Bacteria	593	Open in IMG/M
3300018020\|Ga0187861_10281020	All Organisms → cellular organisms → Bacteria	718	Open in IMG/M
3300018022\|Ga0187864_10289306	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Terriglobales bacterium	736	Open in IMG/M
3300018025\|Ga0187885_10285605	All Organisms → cellular organisms → Bacteria	748	Open in IMG/M
3300018040\|Ga0187862_10040274	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3458	Open in IMG/M
3300018042\|Ga0187871_10175360	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1204	Open in IMG/M
3300018042\|Ga0187871_10853572	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Terriglobales bacterium	509	Open in IMG/M
3300018047\|Ga0187859_10181006	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1122	Open in IMG/M
3300018057\|Ga0187858_10069479	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2465	Open in IMG/M
3300018086\|Ga0187769_11024764	All Organisms → cellular organisms → Bacteria	625	Open in IMG/M
3300018088\|Ga0187771_10033748	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3912	Open in IMG/M
3300019082\|Ga0187852_1372834	Not Available	559	Open in IMG/M
3300019278\|Ga0187800_1896491	All Organisms → cellular organisms → Bacteria	524	Open in IMG/M
3300019787\|Ga0182031_1294161	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Terriglobales bacterium	1711	Open in IMG/M
3300019787\|Ga0182031_1377191	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Terriglobales bacterium	2594	Open in IMG/M
3300019787\|Ga0182031_1446707	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Terriglobales bacterium	2089	Open in IMG/M
3300019888\|Ga0193751_1137071	All Organisms → cellular organisms → Bacteria	893	Open in IMG/M
3300021178\|Ga0210408_11487026	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	508	Open in IMG/M
3300021181\|Ga0210388_10788261	All Organisms → cellular organisms → Bacteria	824	Open in IMG/M
3300021477\|Ga0210398_10070422	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Terriglobales bacterium	2846	Open in IMG/M
3300022524\|Ga0224534_1082431	Not Available	583	Open in IMG/M
3300022726\|Ga0242654_10228336	All Organisms → cellular organisms → Bacteria	658	Open in IMG/M
3300023068\|Ga0224554_1042242	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1232	Open in IMG/M
3300023090\|Ga0224558_1007388	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	7340	Open in IMG/M
3300025419\|Ga0208036_1074549	Not Available	540	Open in IMG/M
3300025453\|Ga0208455_1011918	All Organisms → cellular organisms → Bacteria → Acidobacteria	2172	Open in IMG/M
3300025527\|Ga0208714_1008814	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2658	Open in IMG/M
3300026474\|Ga0247846_1013071	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1456	Open in IMG/M
3300026551\|Ga0209648_10378581	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	949	Open in IMG/M
3300026555\|Ga0179593_1184510	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2350	Open in IMG/M
3300026557\|Ga0179587_10057052	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2264	Open in IMG/M
3300026557\|Ga0179587_10279125	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1073	Open in IMG/M
3300027605\|Ga0209329_1077253	All Organisms → cellular organisms → Bacteria	721	Open in IMG/M
3300027648\|Ga0209420_1033845	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1587	Open in IMG/M
3300027738\|Ga0208989_10129166	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	854	Open in IMG/M
3300027846\|Ga0209180_10141833	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1382	Open in IMG/M
3300027855\|Ga0209693_10377066	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Terriglobales bacterium	686	Open in IMG/M
3300027862\|Ga0209701_10052533	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2611	Open in IMG/M
3300027862\|Ga0209701_10347336	All Organisms → cellular organisms → Bacteria	840	Open in IMG/M
3300027875\|Ga0209283_10029559	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3412	Open in IMG/M
3300027895\|Ga0209624_10439983	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	869	Open in IMG/M
3300027898\|Ga0209067_10140991	All Organisms → cellular organisms → Bacteria	1274	Open in IMG/M
3300027898\|Ga0209067_10265764	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	936	Open in IMG/M
3300027908\|Ga0209006_11288998	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	565	Open in IMG/M
3300027911\|Ga0209698_10878234	All Organisms → cellular organisms → Bacteria	674	Open in IMG/M
3300028047\|Ga0209526_10461320	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	834	Open in IMG/M
3300028069\|Ga0255358_1038114	All Organisms → cellular organisms → Bacteria	680	Open in IMG/M
3300028268\|Ga0255348_1046594	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Terriglobales bacterium	794	Open in IMG/M
3300028646\|Ga0302159_10071197	All Organisms → cellular organisms → Bacteria	771	Open in IMG/M
3300028759\|Ga0302224_10163224	All Organisms → cellular organisms → Bacteria	875	Open in IMG/M
3300028869\|Ga0302263_10284873	All Organisms → cellular organisms → Bacteria	656	Open in IMG/M
3300030339\|Ga0311360_10175437	All Organisms → cellular organisms → Bacteria	1759	Open in IMG/M
3300031057\|Ga0170834_101240189	All Organisms → cellular organisms → Bacteria	661	Open in IMG/M
3300031128\|Ga0170823_15992713	All Organisms → cellular organisms → Bacteria	628	Open in IMG/M
3300031711\|Ga0265314_10347629	All Organisms → cellular organisms → Bacteria	817	Open in IMG/M
3300031823\|Ga0307478_10919157	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Terriglobales bacterium	732	Open in IMG/M
3300031962\|Ga0307479_10500149	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1199	Open in IMG/M
3300031962\|Ga0307479_11007303	All Organisms → cellular organisms → Bacteria	802	Open in IMG/M
3300032782\|Ga0335082_10059322	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	3916	Open in IMG/M
3300032783\|Ga0335079_11976784	All Organisms → cellular organisms → Bacteria	562	Open in IMG/M
3300032783\|Ga0335079_12133784	All Organisms → cellular organisms → Bacteria	536	Open in IMG/M
3300032805\|Ga0335078_12112056	All Organisms → cellular organisms → Bacteria	598	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.13%
Host-Associated	Host-Associated	0.87%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	61.74%
Aquatic	Environmental → Aquatic	37.39%
Plants	Host-Associated → Plants	0.87%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	53.04%
Freshwater	Environmental → Aquatic → Freshwater	28.70%
Sediment	Environmental → Aquatic → Sediment	8.70%
Peat	Environmental → Terrestrial → Peat	8.70%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.87%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	30.43%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	28.70%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	13.04%
Loam	Environmental → Terrestrial → Soil → Loam	9.57%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	8.70%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	8.70%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.87%

Habitat	Taxonomy	Distribution
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	20.00%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	18.26%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	8.70%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	8.70%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	8.70%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	7.83%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	7.83%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	7.83%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	5.22%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.48%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.87%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.87%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.87%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.87%

Habitat	Taxonomy	Distribution
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	14.78%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	14.78%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	8.70%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	7.83%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	6.96%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	5.22%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	3.48%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	3.48%
Bog	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog	3.48%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	2.61%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	2.61%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.61%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.61%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.74%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.74%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	1.74%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	1.74%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	1.74%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	1.74%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.87%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.87%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	0.87%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	0.87%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.87%
Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland	0.87%
Fen	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen	0.87%
Prmafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Prmafrost Soil	0.87%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.87%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	0.87%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	0.87%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	0.87%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001471	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2	Environmental	Open in IMG/M
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300004082	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004153	Grasslands soil microbial communities from Hopland, California, USA (version 2)	Environmental	Open in IMG/M
3300004635	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300005559	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149	Environmental	Open in IMG/M
3300005598	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300006050	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006086	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013	Environmental	Open in IMG/M
3300006162	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012	Environmental	Open in IMG/M
3300006174	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2014	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300009029	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 1 DNA2013-189	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300009623	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_19_10	Environmental	Open in IMG/M
3300009624	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_10	Environmental	Open in IMG/M
3300009628	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_10	Environmental	Open in IMG/M
3300009634	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_13_150	Environmental	Open in IMG/M
3300009665	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_10	Environmental	Open in IMG/M
3300009762	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_17_40	Environmental	Open in IMG/M
3300009839	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_a_PC metaG	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010339	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300014159	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin10_60_metaG	Environmental	Open in IMG/M
3300014169	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_10_metaG	Environmental	Open in IMG/M
3300014491	Permafrost microbial communities from Stordalen Mire, Sweden - 612S2D metaG	Environmental	Open in IMG/M
3300014502	Permafrost microbial communities from Stordalen Mire, Sweden - 612E3M metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300014638	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_60_metaG	Environmental	Open in IMG/M
3300016702	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_30_metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300017940	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_100	Environmental	Open in IMG/M
3300017948	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_10	Environmental	Open in IMG/M
3300018004	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_100	Environmental	Open in IMG/M
3300018009	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_40	Environmental	Open in IMG/M
3300018012	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_5	Environmental	Open in IMG/M
3300018014	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_40	Environmental	Open in IMG/M
3300018019	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_150	Environmental	Open in IMG/M
3300018020	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_100	Environmental	Open in IMG/M
3300018022	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_40	Environmental	Open in IMG/M
3300018025	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_100	Environmental	Open in IMG/M
3300018040	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_150	Environmental	Open in IMG/M
3300018042	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_10	Environmental	Open in IMG/M
3300018047	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_10	Environmental	Open in IMG/M
3300018057	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_150	Environmental	Open in IMG/M
3300018086	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_10_MG	Environmental	Open in IMG/M
3300018088	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_10_MG	Environmental	Open in IMG/M
3300019082	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_40	Environmental	Open in IMG/M
3300019278	Metatranscriptome of tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_20_MT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019787	Permafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (PacBio error correction)	Environmental	Open in IMG/M
3300019888	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1c2	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300022524	Peat soil microbial communities from Stordalen Mire, Sweden - 717 E1 20-24	Environmental	Open in IMG/M
3300022726	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-30-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300023068	Peat soil microbial communities from Stordalen Mire, Sweden - 717 S2 20-24	Environmental	Open in IMG/M
3300023090	Peat soil microbial communities from Stordalen Mire, Sweden - 717 S3 20-24	Environmental	Open in IMG/M
3300025419	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_100 (SPAdes)	Environmental	Open in IMG/M
3300025453	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_4_40 (SPAdes)	Environmental	Open in IMG/M
3300025527	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 415-1 shallow-072012 (SPAdes)	Environmental	Open in IMG/M
3300026474	Peat soil microbial communities from Stordalen Mire, Sweden - P.F.S.T0	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300026555	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027605	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_M3 (SPAdes)	Environmental	Open in IMG/M
3300027648	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O1 (SPAdes)	Environmental	Open in IMG/M
3300027738	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M1 (SPAdes)	Environmental	Open in IMG/M
3300027846	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027855	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3 (SPAdes)	Environmental	Open in IMG/M
3300027862	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027875	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027895	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)	Environmental	Open in IMG/M
3300027898	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013 (SPAdes)	Environmental	Open in IMG/M
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300027911	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300028069	Peat soil microbial communities from Stordalen Mire, Sweden - G.F.S.T0	Environmental	Open in IMG/M
3300028268	Peat soil microbial communities from Stordalen Mire, Sweden - C.B.S.T-25.v5	Environmental	Open in IMG/M
3300028646	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Fen_E1_2	Environmental	Open in IMG/M
3300028759	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E3_1	Environmental	Open in IMG/M
3300028869	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Fen_N1_4	Environmental	Open in IMG/M
3300030339	III_Bog_N1 coassembly	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031128	Oak Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031711	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG	Host-Associated	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032782	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.1	Environmental	Open in IMG/M
3300032783	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3	Environmental	Open in IMG/M
3300032805	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12712J15308_101133613	3300001471	Forest Soil	MGPSAKTQHAIRRSTRLPLEVPVLLTSLDPTGAYSAQCNTTL
JGI12635J15846_107386351	3300001593	Forest Soil	MGSSEKTQLAIRRSTRLPLEVPVQVTSLDASTPFSLECNTTLVNAHGCGLIVPRML
Ga0062384_1003573981	3300004082	Bog Forest Soil	MSPSEKEQHAIRRSTRLPLEVPVLVIGLDPARPFSEQCNTTLVNAHGCGLI
Ga0062389_1008494771	3300004092	Bog Forest Soil	MGPTAKTQHAIRRSTRLPLEVPVLVTSLDSALQFSEQCNTTLVNAHGCGLIVAR
Ga0063455_1015497482	3300004153	Soil	MSASPKQHAIRRSTRLPLEVPILVTSLDSGFDFSEQCVTTLVNAHGCGLVVQRSI
Ga0062388_1011233912	3300004635	Bog Forest Soil	MGPSEKTQHAIRRSTRLPLEVPVLITSLDPATPFSEQCNTTLVNAHGCGLI
Ga0066700_102466103	3300005559	Soil	MGPSETTQHAIRRSTRLPLEVPVLLTSLNAAVTFSEQCNT
Ga0066706_102548541	3300005598	Soil	MGPSETTQHAIRRSTRLPLEVPVLLTSLNAAVTFSEQCNTT
Ga0070763_105270782	3300005610	Soil	MGPSETAQHAIRRSTRLPLEIPVRVTSLDPTQPFSEQCN
Ga0075028_1009058502	3300006050	Watersheds	MRPSEKQQHAIRRSTRLPLEVPVLITSLDPAVAFSEEGNTTLVNAHGCGLTTLRGIERG
Ga0075017_1011646072	3300006059	Watersheds	MGSSEKTQHAIRRSTRLPLEVPVLVTSLDAGVHFSEQCNTTLVNAH
Ga0075019_102012321	3300006086	Watersheds	VLRHMVPLEQPQHAIRRSTRLPLEVPVLVTSLDPDIPLSED
Ga0075030_1001073454	3300006162	Watersheds	MGPSENNQHAIRRSTRLPLEIPVLVTSLPPASPISAP
Ga0075030_1015045262	3300006162	Watersheds	MSPSEKLQHAIRRSTRLPLEVPVLVTSLDPGCPFSLQCKTTLVNAHGCGVIIPQEVVQGI
Ga0075014_1002657141	3300006174	Watersheds	MALSDKSEQHAIRRSTRLPLEIPVQVTSLSAANPFSEQCNTT
Ga0075014_1006293111	3300006174	Watersheds	MGLSGKTQHAIRRSTRLPLEVPVLVTSLDPARPFSEQCNTTLVNAHGCGLIVPRALVN
Ga0066659_104696351	3300006797	Soil	MGPSETTQHAIRRSTRLPLEVPVLLTSLNAAVTFS
Ga0066793_100234481	3300009029	Prmafrost Soil	MGLSEKTQHAIRRSTRLPLEVPVLVTSLDPAQPFSEPGNTTLVNAHGCGLILPRALAPGI
Ga0099829_103340163	3300009038	Vadose Zone Soil	MNFLSANFMSPSEKTQHAIRRSTRLPLEVPVLVTSLNAALPFSEWCNTTLVNAHGCGLIV
Ga0099830_100701444	3300009088	Vadose Zone Soil	MGPSEKTQHAIRRSTRLPLEVPVLVTSLNAALPFSEWCNTTLVNAHGCGLIVPR
Ga0099792_107571141	3300009143	Vadose Zone Soil	MGPSETTQHAIRRSTRLPLEVPVLLPSLNAAVTFSKQCNTT
Ga0116133_10297791	3300009623	Peatland	MGPSEKTQSAIRRSTRLPLEVPVRVTSLSASIPFSEQCNTTLVNAHGCGLIAPSAIALGI
Ga0116105_10028311	3300009624	Peatland	MGPSEKSQHAIRRSTRLPLEIPVRVTSLDPAQPFSEQCNTTLVNAHGCGLI
Ga0116125_12607462	3300009628	Peatland	MGPSEKSQHAIRRSTRLPLEIPVRVTSLDPAQPFSEQCNTTLVN
Ga0116124_11122062	3300009634	Peatland	MGPSEKTQHAIRRSTRLPLEVPVLVTSLDADLPFSEQCNTTLVNAHGCGLIVPRVLAHGI
Ga0116135_12395161	3300009665	Peatland	MGSSEKNQHAIRRSTRLPLEVPVQVTTLDPGSPFSIQCNTTLVNAHGCGLIVPRALAQGIQVR
Ga0116130_10878711	3300009762	Peatland	MGLSEKPQHAIRRSTRLPLEVPVLVTSLDPARQFSEPCNTTLVNAHGCGVIAPREFEKGTQVW
Ga0116130_11585101	3300009762	Peatland	MGASEKTQHAIRRSTRLPLEVPVLVTSLNAAVPFSEPCNTTLVNAHGCGLIAARALAQ
Ga0116223_102328241	3300009839	Peatlands Soil	MCPLGRTQHAIRRSTRLPLEVPVLVTSLDPARPFSEQCNTT
Ga0126373_104527291	3300010048	Tropical Forest Soil	MGREQKQHAIRRSTRLPLEIPVLVASLDSALAISQQGKT
Ga0074046_104155741	3300010339	Bog Forest Soil	MGPSGKTQHAIRRSTRLPLEVPVLVTSLDPARPFSEQCNTTLVNAHGCGLI
Ga0074046_109218961	3300010339	Bog Forest Soil	MGPSKKTEHAIRRSTRLPLEVPVLVTSLDPSVPFAEQCN
Ga0126376_105734753	3300010359	Tropical Forest Soil	MSAGPQSHAIRRSTRLPLEVPVRVTSLDPAVPLTEECCT
Ga0137391_104980993	3300011270	Vadose Zone Soil	LQIDVFRPKSFLPADFMGPSEKTQHAIRRSTRLPLEVPVLVTSLNAALPFSEWCNTTLVNAHGCGLIVPR
Ga0137393_107213282	3300011271	Vadose Zone Soil	MNFLPANFMSPSEKTQHAIRRSTRLPLEVPVLVTSLNAALPFSEWCNTTLVNAHGCGLIVPRALA
Ga0137388_119787751	3300012189	Vadose Zone Soil	MNFLPANFMSPSEKTQHAIRRSTRLPLEVPVLVTSLNAALPFSEW
Ga0137385_106824063	3300012359	Vadose Zone Soil	MGPSETTQHAIRRSTRLPLEVPVLLTSLNAAVTFSEQCNTTLVNA
Ga0137390_120000761	3300012363	Vadose Zone Soil	LQIDVFRPKSFLPADFMGPSEKTQHAIRRSTRLPLEVPVLVTSLNAALPFSEWCNTTLVNAHGCGLI
Ga0137398_103919323	3300012683	Vadose Zone Soil	MGASETTQHAIRRSTRLPLEVPVLLTSLNAALAFSEQCNTTLVNAHGCGLIVPRALAPG
Ga0137419_109287782	3300012925	Vadose Zone Soil	MGPSETTQHAIRRSTRLPLEVPVLLTSLNAAVTFSEQCN
Ga0181530_101836103	3300014159	Bog	MGPSEKTQHAIRRSTRLPLEVPVVVTSLDAASPFSEQCNTTLVNAHGCGLIVSRELAH
Ga0181531_100895903	3300014169	Bog	MPDHMGRRERTQHAIRRSTRLPLEVPVLLTSLDPAQPFSGQCNTTLVNAHGC
Ga0182014_103336171	3300014491	Bog	MGASEKTQHAIRRSTRLPLEVPVLVTSLNAAVPFSEQCNTTLVNAHGCGLI
Ga0182021_103713294	3300014502	Fen	MGPSEKTQHAIRRSTRLPLEVPVLVTSLDAASPFSEPCNT
Ga0181536_102544302	3300014638	Bog	MEPSEKTGQAIRRSTRLPLEVPVLVTSLNAAVPFSEPCNTTLVN
Ga0181511_15144151	3300016702	Peatland	MGSSEKTQHAIRRSTRLPLEVPVLVTSLDAGQPFSEQCQTTLVNAHGCGLIVPCGLKQGLQVR
Ga0187853_100818851	3300017940	Peatland	MGPSEKTQHAIRRSTRLPLEVPVLVTSLNAAAPFSEQCNTTLVNAHG
Ga0187847_107464201	3300017948	Peatland	MGSSEKTQYAIRRSTRLPLEVPVLVTSLDASAPFCKQCNTTLVNAHGC
Ga0187865_10974341	3300018004	Peatland	MGPSEKTQHAIRRSTRLPLEVPVLVTSLDAASPFSEQCNTTLVNAHGCGLI
Ga0187884_100330351	3300018009	Peatland	LPANSMGLSEKPQHAIRRSTRLPLEVPVLVTSLDPARQFSEPCNTTLVNAHGCG
Ga0187810_100692443	3300018012	Freshwater Sediment	MALSEKQQHAIRRSTRLPLEVPVLVTSLDPAVAFSEPCN
Ga0187860_10393891	3300018014	Peatland	MGPSEKTQHAIRRSTRLPLEVPVLVTSLNAAAPFSEQCNTTL
Ga0187860_11382431	3300018014	Peatland	MGPSEKTEHAIRRSTRLPLEVPVLVTSLNAAAPFSEQCNTT
Ga0187874_103548572	3300018019	Peatland	MGSPEKTQHAIRRSTRLPLEVPVLVTSLDAAHPFSEQCNTTLVNAHGCGLIVPR
Ga0187861_102810201	3300018020	Peatland	MGPSEKTQHAIRRSTRLPLEVPVLVTSLDADLPFSEQCNTTLVNAHGCGLIVPRVLAHG
Ga0187864_102893062	3300018022	Peatland	MGLSEKPQHAIRRSTRLPLEVPVLVTSLDPARQFSEPCNTTLVN
Ga0187885_102856051	3300018025	Peatland	MGSPEKTQHAIRRSTRLPLEVPVRVTSLDAAQPFSEQCNTTLVNAH
Ga0187862_100402741	3300018040	Peatland	MGSPEKTQHAIRRSTRLPLEVPVRVTSLDAAQPFSEQCNTTLVNAHGCGLIVSRVLAHGMPVR
Ga0187871_101753601	3300018042	Peatland	MGPSEKTQSAIRRSTRLPLEVPVRVTSLNPTVPFSEQCNTSLVNAHGCGVIAPRAIAK
Ga0187871_108535722	3300018042	Peatland	MGPSENTQHAIRRSTRLPLEIPVRVTSLDSAQPFSEQCNTT
Ga0187859_101810061	3300018047	Peatland	MGASEKTQHAIRRSTRLPLEVPVLVTSLNAAVPFSEPCNTTLVNAH
Ga0187858_100694794	3300018057	Peatland	MGPSEKTQHAIRRSTRLPLEVPVLVTSLNAAAPFS
Ga0187769_110247641	3300018086	Tropical Peatland	MGPLESQHAIRRSTRLPLEVPVQVTSLDPAFHFSER
Ga0187771_100337481	3300018088	Tropical Peatland	MAVLEKPQQHAIRRSTRLPLEVPVRLTSLSADFPFSEPCHTTLVNAHGCGLISPRAIARGIQV
Ga0187852_13728341	3300019082	Peatland	MGLSEKPQHAIRRSTRLPLEVPVLVTSLDPARQFSEPCNTTLVNAHGCG
Ga0187800_18964911	3300019278	Peatland	MRSSQESQAIRRSTRLPLEVPVRVISLDAAFPFSEQC
Ga0182031_12941612	3300019787	Bog	METSEKTQSAIRRSTRLPLEIPVLVTSLDPGLRFFEQCNTTIVNAHGCGVVSPAPS
Ga0182031_13771913	3300019787	Bog	METSEKTQSAIRRSTRLPLEIPVLVTSLDPGLRFFEQCNTTIVNAHDVEMVPPAPS
Ga0182031_14467074	3300019787	Bog	METSEKTQSAIRRSTRLPLEIPVLVTSLDPGLRFFEQCNTTIVNAHDVEWFPPAPS
Ga0193751_11370711	3300019888	Soil	MGPSGKTQHAIRRSTRLPLEVPVLVTSLNPAVTFSEQCNTTLV
Ga0210408_114870261	3300021178	Soil	MGPSEKTQHAIRRSTRLPLEVPVLLTSLNAAVTFSEQCNTTLVNAHGCGLIVPREL
Ga0210388_107882611	3300021181	Soil	MGPSAKAQHAIRRSTRLPLEVPVLVTSLDPAAPFSEKCNTTLVNAH
Ga0210398_100704222	3300021477	Soil	MSPSEKAQHAIRRSTRLPLEVPVLVTSLDPVRPFSEQCNTTLVNAHGCGLIAPREFGHGVQV
Ga0224534_10824311	3300022524	Soil	MGASEKTQHAIRRSTRLPLEVPVLVTSLNAAVPFSEQCNTTLVNAHGCGLIAARALAQGT
Ga0242654_102283362	3300022726	Soil	MGPSEKTQHAIRRSTRLPLEVPVLVTSLNPAVPYSEQCNTTLVNAHGC
Ga0224554_10422423	3300023068	Soil	MGASEKTQHAIRRSTRLPLEVPVLVTSLNAAVPFSE
Ga0224558_10073889	3300023090	Soil	MGASEKTQHAIRRSTRLPLEVPVLVTSLNAAVPFSEQCNTTLVNAHGCGLIA
Ga0208036_10745492	3300025419	Peatland	MGPSEKTQHAIRRSTRLPLEVPVLVTSLDADLPFSEQ
Ga0208455_10119181	3300025453	Peatland	MGPSEKTQHAIRRSTRLPLEVPVVVTSLDAASPFSEQCNTTLVNAHG
Ga0208714_10088141	3300025527	Arctic Peat Soil	MGPSDKSLHAIRRSTRLPLEVPVLVTSLDPTLPFSAPGNTTLVNAHGCGLIV
Ga0247846_10130713	3300026474	Soil	MGPSEKTQHAIRRSTRLPLEVPVLVTSLDAASPFSEPCNTTLVNAHGCGLIVPRAIKQGI
Ga0209648_103785813	3300026551	Grasslands Soil	MGASEKSQHAIRRSTRLPLEVPVLVTSLDAAVPFSEQCNTTLVNAH
Ga0179593_11845104	3300026555	Vadose Zone Soil	MGPSEKTQHAIRRSTRLPLEVPVLVTSLDAASSFSERCNTTLVNAMDVG
Ga0179587_100570524	3300026557	Vadose Zone Soil	MGPSEKTQHAIRRSTRLPLEVPVLVTSLDAASSFSERCNTTLVNAHG
Ga0179587_102791251	3300026557	Vadose Zone Soil	MGASETTQHAIRRSTRLPLEVPVLLTSLNAAVTFSERCNTTLVNAHGCGLIVPRALA
Ga0209329_10772531	3300027605	Forest Soil	MGSPEKTEHAIRRSSRLPLEVPVLVTSLDASAPFFERCNTT
Ga0209420_10338451	3300027648	Forest Soil	MGSSGKTQHAIRRSTRLPLEVPVQVTSLDAASPFSIQCNTTLVNAHGCGLIVSRVLAQGI
Ga0208989_101291661	3300027738	Forest Soil	MGTSEKNQYAIRRSSRLPIEVPVLVASLDADAPFSE
Ga0209180_101418333	3300027846	Vadose Zone Soil	MGPSEKTQHAIRRSTRLPLEVPVLVTSLNAALPFSEWCNTTLVNAHGCGLIVP
Ga0209693_103770661	3300027855	Soil	MGPSETAQHAIRRSTRLPLEIPVRVTSLDPTQPFSEQCNTT
Ga0209701_100525334	3300027862	Vadose Zone Soil	MGPSEKTQHAIRRSTRLPLEVPVLVTSLNAALPFSEW
Ga0209701_103473362	3300027862	Vadose Zone Soil	MSPSEKTQHAIRRSTRLPLEVPVLVTSLNAALPFSEWCNTTLVNAHGCGLIVPRA
Ga0209283_100295591	3300027875	Vadose Zone Soil	MSPSEKTQHAIRRSTRLPLEVPVLVTSLNAALPFSEWCNTTLVNAHGCGL
Ga0209624_104399833	3300027895	Forest Soil	MGSSEKAQHAIRRSTRLPLEVPVQITSLDPAFSFSERCNT
Ga0209067_101409913	3300027898	Watersheds	MDFGEKTQHAIRRSTRLPLEVPVLVTGLSPGQPFSAPGNTT
Ga0209067_102657641	3300027898	Watersheds	VLRHMVPLEQPQHAIRRSTRLPLEVPVLVTSLDPDIPLSEDCN
Ga0209006_112889981	3300027908	Forest Soil	MGPSEKTQHAIRRSTRLPLEVPVLVTSLNAGVSFSEQCNTTLVNAHGCGLIAPRAIA
Ga0209698_108782342	3300027911	Watersheds	MGSSEKKQHAIRRSTRLPLEIPMLVTSLDPAQPFSEPCNTTLVNAHGCGLIVTRALRRGM
Ga0209526_104613203	3300028047	Forest Soil	MGASEKNQYAIRRSSRLPLEVPVLVASLDADAPFSERCNTTLVN
Ga0255358_10381141	3300028069	Soil	MGPSEKTQHAIRRSTRLPLEVPVLVTSLDAASPFSEPCN
Ga0255348_10465941	3300028268	Soil	METSEKTQSAIRRSTRLPLEIPVLVTSLDPGLRFFEQCN
Ga0302159_100711973	3300028646	Fen	MGTSQKQHAIRRSTRLPLEIPVLVTSLNPAVTLSDPATTTLVNAHG
Ga0302224_101632243	3300028759	Palsa	MEHLQKTAHAIRRSTRLPLEIPVQLTNLDAAPFCERCNTTLVNAHGCGVIAMRAITQG
Ga0302263_102848732	3300028869	Fen	MGTSQKQHAIRRSTRLPLEIPVLVTSLNPAVTLSDPATTTL
Ga0311360_101754373	3300030339	Bog	MGSAENSQHAIRRSTRLPLEVPVRVTSMAHDFAFSEQCNTTLVNAHGC
Ga0170834_1012401892	3300031057	Forest Soil	MGSSEKTQHAIRRSTRLPLEVPVLVTSLNPTVPYSEQCNTTLVNAH
Ga0170823_159927132	3300031128	Forest Soil	MGSSEKTQHAIRRSTRLPLEVPVLVTSLNPTLTFS
Ga0265314_103476293	3300031711	Rhizosphere	MGSSEKTQHAIRRSTRLPLEVPVRVTSLTPADPFSEQCNTTLVNAHGCG
Ga0307478_109191572	3300031823	Hardwood Forest Soil	MGSSEKSQHAIRRSTRLPLEIPVRVTSLDAARPFSEQCNTTLVNAHGCGLIAPCEFGHG
Ga0307479_105001491	3300031962	Hardwood Forest Soil	MGPSEKTQHAIRRSTRLPLEVPVLLTSLNAAVTFSEQC
Ga0307479_110073033	3300031962	Hardwood Forest Soil	MGPSEKTQHAIRRSTRLPLEVPVLVTSLNAAVTFSEQCNTTLVN
Ga0335082_100593226	3300032782	Soil	MAPSENAQHAIRRSTRLPLEVPVQVTSLSPHFSFSERCNTTLVTAHGCGL
Ga0335079_119767841	3300032783	Soil	MGSSEKAQHAIRRSTRLPLEVPVQVTSLSPDFVFSERCNTTLVHAPG
Ga0335079_121337842	3300032783	Soil	MSSSENAQHAIRRSTRLPLEVPVQVTSLSPQFPFSERCNTTLVNAHGCGLISPRALEMHL
Ga0335078_121120562	3300032805	Soil	MASSENAQHAIRRSTRLPLEVPVQVTSLSAQFPFSERCNTTLVNAHGCGLISPRA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F080351

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences