Metagenome / Metatranscriptome Family F080316

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F080316
Family Type	Metagenome / Metatranscriptome
Number of Sequences	115
Average Sequence Length	70 residues
Representative Sequence	MVIEEEILARIRAAKAWDKDARLEDFQVTAADNGFVLINLKTRRAQLLYDEDSELHDLEQLFPATKS
Number of Associated Samples	93
Number of Associated Scaffolds	115

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	52.17 %
% of genes near scaffold ends (potentially truncated)	27.83 %
% of genes from short scaffolds (< 2000 bps)	84.35 %
Associated GOLD sequencing projects	82
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.62

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (63.478 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere (8.696 % of family members)
Environment Ontology (ENVO)	Unclassified (54.783 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (60.000 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 23.16% β-sheet: 18.95% Coil/Unstructured: 57.89%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.62
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.62
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 115 Family Scaffolds
PF13444	Acetyltransf_5	8.70
PF13360	PQQ_2	5.22
PF07589	PEP-CTERM	3.48
PF14417	MEDS	2.61
PF03636	Glyco_hydro_65N	1.74
PF07508	Recombinase	1.74
PF02518	HATPase_c	1.74
PF01243	Putative_PNPOx	0.87
PF07536	HWE_HK	0.87
PF07719	TPR_2	0.87
PF03466	LysR_substrate	0.87
PF13229	Beta_helix	0.87
PF13489	Methyltransf_23	0.87
PF07568	HisKA_2	0.87
PF11008	DUF2846	0.87
PF08448	PAS_4	0.87
PF03454	MoeA_C	0.87
PF00805	Pentapeptide	0.87

COG ID	Name	Functional Category	% Frequency in 115 Family Scaffolds
COG1554	Phosphatase/phosphodiesterase/kojibiose phosphorylase YcjT/PafA/Npp1, AlkP superfamily	Carbohydrate transport and metabolism [G]	1.74
COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	Replication, recombination and repair [L]	1.74
COG3920	Two-component sensor histidine kinase, HisKA and HATPase domains	Signal transduction mechanisms [T]	1.74
COG0303	Molybdopterin Mo-transferase (molybdopterin biosynthesis)	Coenzyme transport and metabolism [H]	0.87
COG1357	Uncharacterized conserved protein YjbI, contains pentapeptide repeats	Function unknown [S]	0.87
COG4251	Bacteriophytochrome (light-regulated signal transduction histidine kinase)	Signal transduction mechanisms [T]	0.87

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	63.48 %
Unclassified	root	N/A	36.52 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	63.48 %
Unclassified	root	N/A	36.52 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	63.48 %
Unclassified	root	N/A	36.52 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	46.96 %
Unclassified	root	N/A	36.52 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.87 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	43.48 %
Unclassified	root	N/A	36.52 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.52 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	26.09 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4.35 %
Micropepsales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Micropepsales	0.87 %
Bryobacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	0.87 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.52 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	26.09 %
Kaistiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Kaistiaceae	1.74 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1.74 %
Thalassospiraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Thalassospiraceae	0.87 %
Bryobacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae	0.87 %
Micropepsaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Micropepsales → Micropepsaceae	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.52 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	26.09 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1.74 %
Kaistia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Kaistiaceae → Kaistia	1.74 %
unclassified Bryobacteraceae	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → unclassified Bryobacteraceae	0.87 %
Magnetovibrio	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Thalassospiraceae → Magnetovibrio	0.87 %
Rhizomicrobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Micropepsales → Micropepsaceae → Rhizomicrobium	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.52 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	26.09 %
Kaistia soli	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Kaistiaceae → Kaistia → Kaistia soli	1.74 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1.74 %
unclassified Magnetovibrio	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Thalassospiraceae → Magnetovibrio → unclassified Magnetovibrio	0.87 %
Bryobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → unclassified Bryobacteraceae → Bryobacteraceae bacterium	0.87 %
Rhizomicrobium electricum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Micropepsales → Micropepsaceae → Rhizomicrobium → Rhizomicrobium electricum	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.52 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	26.09 %
Kaistia soli DSM 19436	strain	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Kaistiaceae → Kaistia → Kaistia soli → Kaistia soli DSM 19436	1.74 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1.74 %
Magnetovibrio sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Thalassospiraceae → Magnetovibrio → unclassified Magnetovibrio → Magnetovibrio sp.	0.87 %
Bryobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → unclassified Bryobacteraceae → Bryobacteraceae bacterium	0.87 %
Rhizomicrobium electricum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Micropepsales → Micropepsaceae → Rhizomicrobium → Rhizomicrobium electricum	0.87 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2170459019\|G14TP7Y01EW5XG	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	602	Open in IMG/M
3300003323\|rootH1_10292819	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1644	Open in IMG/M
3300004114\|Ga0062593_100341896	All Organisms → cellular organisms → Bacteria	1302	Open in IMG/M
3300005327\|Ga0070658_10074339	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2787	Open in IMG/M
3300005328\|Ga0070676_11124147	Not Available	594	Open in IMG/M
3300005330\|Ga0070690_100888779	All Organisms → cellular organisms → Bacteria	696	Open in IMG/M
3300005331\|Ga0070670_100348382	Not Available	1301	Open in IMG/M
3300005331\|Ga0070670_100657647	Not Available	940	Open in IMG/M
3300005334\|Ga0068869_100045849	All Organisms → cellular organisms → Bacteria → Proteobacteria	3149	Open in IMG/M
3300005334\|Ga0068869_100468487	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1047	Open in IMG/M
3300005335\|Ga0070666_10954881	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	635	Open in IMG/M
3300005338\|Ga0068868_101921185	Not Available	561	Open in IMG/M
3300005366\|Ga0070659_101788348	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → unclassified Bryobacteraceae → Bryobacteraceae bacterium	550	Open in IMG/M
3300005367\|Ga0070667_101817705	Not Available	573	Open in IMG/M
3300005456\|Ga0070678_100061397	Not Available	2770	Open in IMG/M
3300005466\|Ga0070685_10339120	Not Available	1024	Open in IMG/M
3300005511\|Ga0077121_10067627	All Organisms → cellular organisms → Bacteria	3564	Open in IMG/M
3300005548\|Ga0070665_100014042	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	8052	Open in IMG/M
3300005618\|Ga0068864_101889981	Not Available	603	Open in IMG/M
3300005718\|Ga0068866_10079056	All Organisms → cellular organisms → Bacteria	1761	Open in IMG/M
3300005842\|Ga0068858_101230234	Not Available	736	Open in IMG/M
3300005843\|Ga0068860_102071124	Not Available	590	Open in IMG/M
3300006175\|Ga0070712_100494775	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1024	Open in IMG/M
3300006237\|Ga0097621_100153319	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1977	Open in IMG/M
3300006358\|Ga0068871_100198753	All Organisms → cellular organisms → Bacteria	1730	Open in IMG/M
3300006881\|Ga0068865_101005268	Not Available	730	Open in IMG/M
3300009093\|Ga0105240_11260886	Not Available	781	Open in IMG/M
3300009093\|Ga0105240_12197874	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	572	Open in IMG/M
3300009098\|Ga0105245_10004134	All Organisms → cellular organisms → Bacteria → Proteobacteria	12892	Open in IMG/M
3300009098\|Ga0105245_12302571	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	592	Open in IMG/M
3300009174\|Ga0105241_11868394	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	588	Open in IMG/M
3300009174\|Ga0105241_12489241	Not Available	518	Open in IMG/M
3300009176\|Ga0105242_10702689	All Organisms → cellular organisms → Bacteria	989	Open in IMG/M
3300009177\|Ga0105248_11946539	Not Available	667	Open in IMG/M
3300009545\|Ga0105237_10287976	All Organisms → cellular organisms → Bacteria	1645	Open in IMG/M
3300010048\|Ga0126373_10942183	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	928	Open in IMG/M
3300010048\|Ga0126373_12093008	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	628	Open in IMG/M
3300010358\|Ga0126370_11715228	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	605	Open in IMG/M
3300010361\|Ga0126378_11692442	Not Available	719	Open in IMG/M
3300010366\|Ga0126379_10116369	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2417	Open in IMG/M
3300010366\|Ga0126379_10832615	Not Available	1023	Open in IMG/M
3300010371\|Ga0134125_10053682	All Organisms → cellular organisms → Bacteria	4482	Open in IMG/M
3300010375\|Ga0105239_12546882	Not Available	596	Open in IMG/M
3300010376\|Ga0126381_100051250	Not Available	5054	Open in IMG/M
3300010396\|Ga0134126_10736113	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1118	Open in IMG/M
3300010397\|Ga0134124_11467727	Not Available	709	Open in IMG/M
3300010399\|Ga0134127_12234272	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	626	Open in IMG/M
3300010400\|Ga0134122_10827296	All Organisms → cellular organisms → Bacteria	887	Open in IMG/M
3300012212\|Ga0150985_104852332	Not Available	1625	Open in IMG/M
3300012212\|Ga0150985_105760721	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	903	Open in IMG/M
3300012212\|Ga0150985_110550874	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1016	Open in IMG/M
3300012212\|Ga0150985_115082152	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	698	Open in IMG/M
3300012212\|Ga0150985_119865723	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1054	Open in IMG/M
3300012469\|Ga0150984_102216050	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1259	Open in IMG/M
3300013296\|Ga0157374_12384901	Not Available	556	Open in IMG/M
3300013306\|Ga0163162_10538537	Not Available	1296	Open in IMG/M
3300013307\|Ga0157372_12326722	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	615	Open in IMG/M
3300014159\|Ga0181530_10351458	Not Available	760	Open in IMG/M
3300014325\|Ga0163163_12247207	Not Available	604	Open in IMG/M
3300014501\|Ga0182024_12880873	Not Available	510	Open in IMG/M
3300014968\|Ga0157379_10293957	All Organisms → cellular organisms → Bacteria	1480	Open in IMG/M
3300014969\|Ga0157376_10391228	All Organisms → cellular organisms → Bacteria	1342	Open in IMG/M
3300015371\|Ga0132258_12074324	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1429	Open in IMG/M
3300019890\|Ga0193728_1073344	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1623	Open in IMG/M
3300020583\|Ga0210401_10046040	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4126	Open in IMG/M
3300020583\|Ga0210401_10179488	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1973	Open in IMG/M
3300021088\|Ga0210404_10090659	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1524	Open in IMG/M
3300021181\|Ga0210388_10035000	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4146	Open in IMG/M
3300021560\|Ga0126371_10976450	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	989	Open in IMG/M
3300021560\|Ga0126371_13270316	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	548	Open in IMG/M
3300023275\|Ga0247776_10218408	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	716	Open in IMG/M
3300025297\|Ga0209758_1062422	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1220	Open in IMG/M
3300025899\|Ga0207642_10024604	All Organisms → cellular organisms → Bacteria	2423	Open in IMG/M
3300025903\|Ga0207680_10091372	All Organisms → cellular organisms → Bacteria	1937	Open in IMG/M
3300025903\|Ga0207680_11363568	Not Available	503	Open in IMG/M
3300025906\|Ga0207699_10786479	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Micropepsales → Micropepsaceae → Rhizomicrobium → Rhizomicrobium electricum	699	Open in IMG/M
3300025909\|Ga0207705_10079507	All Organisms → cellular organisms → Bacteria	2388	Open in IMG/M
3300025911\|Ga0207654_10260140	All Organisms → cellular organisms → Bacteria	1166	Open in IMG/M
3300025911\|Ga0207654_11189262	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	556	Open in IMG/M
3300025913\|Ga0207695_10104502	Not Available	2821	Open in IMG/M
3300025914\|Ga0207671_11162861	Not Available	605	Open in IMG/M
3300025915\|Ga0207693_11416077	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	515	Open in IMG/M
3300025926\|Ga0207659_11467917	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	584	Open in IMG/M
3300025931\|Ga0207644_11012678	Not Available	697	Open in IMG/M
3300025931\|Ga0207644_11880629	Not Available	500	Open in IMG/M
3300025935\|Ga0207709_10623362	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	856	Open in IMG/M
3300025940\|Ga0207691_11531635	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	544	Open in IMG/M
3300025942\|Ga0207689_10919378	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	738	Open in IMG/M
3300025949\|Ga0207667_11872440	Not Available	562	Open in IMG/M
3300026041\|Ga0207639_10512772	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1097	Open in IMG/M
3300026041\|Ga0207639_11044258	Not Available	766	Open in IMG/M
3300026095\|Ga0207676_12345194	Not Available	531	Open in IMG/M
3300026116\|Ga0207674_10205140	All Organisms → cellular organisms → Bacteria → Proteobacteria	1921	Open in IMG/M
3300028379\|Ga0268266_10287074	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1531	Open in IMG/M
3300028572\|Ga0302152_10289726	Not Available	537	Open in IMG/M
3300028873\|Ga0302197_10490180	Not Available	536	Open in IMG/M
3300029914\|Ga0311359_10320941	All Organisms → cellular organisms → Bacteria	1268	Open in IMG/M
3300030020\|Ga0311344_10710658	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Kaistiaceae → Kaistia → Kaistia soli → Kaistia soli DSM 19436	836	Open in IMG/M
3300030860\|Ga0074000_11379141	Not Available	628	Open in IMG/M
3300031259\|Ga0302187_10496036	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Kaistiaceae → Kaistia → Kaistia soli → Kaistia soli DSM 19436	561	Open in IMG/M
3300031708\|Ga0310686_107845638	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	682	Open in IMG/M
3300031708\|Ga0310686_111325042	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1493	Open in IMG/M
3300031708\|Ga0310686_119514691	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Thalassospiraceae → Magnetovibrio → unclassified Magnetovibrio → Magnetovibrio sp.	1589	Open in IMG/M
3300031715\|Ga0307476_11041411	Not Available	602	Open in IMG/M
3300031716\|Ga0310813_11034706	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	750	Open in IMG/M
3300031720\|Ga0307469_10593000	Not Available	989	Open in IMG/M
3300031962\|Ga0307479_10923037	Not Available	845	Open in IMG/M
3300032008\|Ga0318562_10029503	All Organisms → cellular organisms → Bacteria	2915	Open in IMG/M
3300032180\|Ga0307471_103611065	Not Available	547	Open in IMG/M
3300032421\|Ga0310812_10547073	Not Available	520	Open in IMG/M
3300032770\|Ga0335085_10008897	All Organisms → cellular organisms → Bacteria	15223	Open in IMG/M
3300033475\|Ga0310811_10156972	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2852	Open in IMG/M
3300033475\|Ga0310811_10252263	All Organisms → cellular organisms → Bacteria → Proteobacteria	2087	Open in IMG/M
3300033475\|Ga0310811_10389790	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1533	Open in IMG/M
3300033475\|Ga0310811_10808451	Not Available	873	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	56.52%
Environmental	Environmental	42.61%
Engineered	Engineered	0.87%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	56.52%
Terrestrial	Environmental → Terrestrial	41.74%
Aquatic	Environmental → Aquatic	0.87%
Solid Waste	Engineered → Solid Waste	0.87%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	36.52%
Rhizosphere	Host-Associated → Plants → Rhizosphere	31.30%
Rhizoplane	Host-Associated → Plants → Rhizoplane	21.74%
Peat	Environmental → Terrestrial → Peat	4.35%
Roots	Host-Associated → Plants → Roots	2.61%
Freshwater	Environmental → Aquatic → Freshwater	0.87%
Plant Litter	Environmental → Terrestrial → Plant Litter	0.87%
Rhizome	Host-Associated → Plants → Rhizome	0.87%
Grass	Engineered → Solid Waste → Grass	0.87%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	30.43%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	16.52%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	15.65%
Soil	Host-Associated → Plants → Rhizosphere → Soil	14.78%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	5.22%
Loam	Environmental → Terrestrial → Soil → Loam	4.35%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	4.35%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	2.61%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.74%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.87%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	0.87%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.87%
Unclassified	Host-Associated → Plants → Rhizome → Unclassified	0.87%
Composting	Engineered → Solid Waste → Grass → Composting	0.87%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	20.87%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	16.52%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	15.65%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	14.78%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	8.70%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	5.22%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.35%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	4.35%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	2.61%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	0.87%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.87%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.87%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.87%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	0.87%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.87%
Unclassified	Host-Associated → Plants → Rhizome → Unclassified → Unclassified	0.87%
Unclassified	Engineered → Solid Waste → Grass → Composting → Unclassified	0.87%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	8.70%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	8.70%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	8.70%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	7.83%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	6.09%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	5.22%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	4.35%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	4.35%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	4.35%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	3.48%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	3.48%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	3.48%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	3.48%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.61%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	2.61%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	2.61%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	1.74%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	1.74%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	1.74%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.74%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	0.87%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.87%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.87%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	0.87%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	0.87%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.87%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.87%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.87%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.87%
Sugarcane Root And Bulk Soil	Host-Associated → Plants → Rhizome → Unclassified → Unclassified → Sugarcane Root And Bulk Soil	0.87%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.87%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.87%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.87%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.87%
Switchgrass, Maize And Mischanthus Litter	Engineered → Solid Waste → Grass → Composting → Unclassified → Switchgrass, Maize And Mischanthus Litter	0.87%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459019	Litter degradation MG4	Engineered	Open in IMG/M
3300003323	Sugarcane root Sample H1	Host-Associated	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300005327	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG	Host-Associated	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005335	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG	Host-Associated	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005366	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG	Host-Associated	Open in IMG/M
3300005367	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG	Host-Associated	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005466	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG	Environmental	Open in IMG/M
3300005511	Combined assembly of arab plate scrape MF_Col (Combined Assembly)	Host-Associated	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated	Open in IMG/M
3300005718	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2	Host-Associated	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006358	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2	Host-Associated	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300009093	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300014159	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin10_60_metaG	Environmental	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300019890	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c1	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300023275	Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L199-509C-5	Environmental	Open in IMG/M
3300025297	Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes)	Host-Associated	Open in IMG/M
3300025899	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025903	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025909	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025911	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025913	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025914	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025935	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025940	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025942	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025949	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026041	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026095	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026116	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028379	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300028572	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N2_1	Environmental	Open in IMG/M
3300028873	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_N2_1	Environmental	Open in IMG/M
3300029914	III_Bog_E2 coassembly	Environmental	Open in IMG/M
3300030020	II_Bog_N1 coassembly	Environmental	Open in IMG/M
3300030860	Metatranscriptome of forest soil microbial communities from Montana, USA - Site 5 -Litter GP-1A (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031259	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_E1_3	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032008	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f18	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032421	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NN3	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300033475	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YC	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
4MG_00500080	2170459019	Switchgrass, Maize And Mischanthus Litter	MIIDEEIMARIRAAKAWDKEARLEDFQIRAAENGIVLINLKTGRAQLLYDEDSELHDLDQLFP
rootH1_102928191	3300003323	Sugarcane Root And Bulk Soil	MVIEEEILARIRAAKAWDKKARLEDFQVTAAENGFVLINLKTRRAQLLYDEDSELNDLEQLFPKNKKLGRPLL*
Ga0062593_1003418962	3300004114	Soil	MDVEDEIRARIRAAKAWDKQARLEDFQVRAAENGFVLINLKTRRAHLIYDEDSELPGLETLFPKN*
Ga0070658_100743392	3300005327	Corn Rhizosphere	MSINDEILARIRAAKVWDKDSKLEDFQIRAESNGFVLVNLRTGRAQLLYDDESELKDLAELFPDGVLSFKAPLNE*
Ga0070676_111241472	3300005328	Miscanthus Rhizosphere	MDVEDEIRARIRAAKAWDKQARLEDFQVRAAENGFVLINLKTRRAHLIYDEDSEL
Ga0070690_1008887792	3300005330	Switchgrass Rhizosphere	MVIEEEILARVRAAKAWDKNARLEDFQVTAAENGFVLINLKTRRAQLLYDEDSELHDLEQLFPAAKS*
Ga0070670_1003483822	3300005331	Switchgrass Rhizosphere	MVIDEEILARVRAAKVWDKDARLEDFQIRAAENGFVLINLKTRRAQLLYDDDSELTDLEQLFPENRKYGRPLL*
Ga0070670_1006576471	3300005331	Switchgrass Rhizosphere	MVIEEEILARVRAAKAWDKNARLEDFQVTAAENGFVLINLKTRRAQLLYDEDSEL
Ga0068869_1000458492	3300005334	Miscanthus Rhizosphere	MIIDDEILARIRAAKVWDKNSRLEDFQIRAGENGFVLLNLRTRRAQLLYDDESELHDLEQLFPGGLAPSR*
Ga0068869_1004684872	3300005334	Miscanthus Rhizosphere	MVIEEEILARIRAAKAWDKDARLEDFQVTAADNGFVLINLKTRRAQLLYDEDSELHDLEQLFPATKS*
Ga0070666_109548811	3300005335	Switchgrass Rhizosphere	MRIEDEIMARIRAAKVWEKDSKPEDFQLRADENGFVLVNLKTGRAQLIYDELSELRDLEELFPNGAFPPSRNDSASG*
Ga0068868_1019211851	3300005338	Miscanthus Rhizosphere	MDIDEEIRARIRATKAWDKDARLQDFQIKAAANGYVLINLKTRRAHLIYDEDSELPGLETLFPRN*
Ga0070659_1017883481	3300005366	Corn Rhizosphere	LMSCGRRMNIDEEILARIRAAKAWDREAKLDDFQLKAAENGFVLINLKTRRAQLIYDEDSELSDLDQLFAKS*
Ga0070667_1018177052	3300005367	Switchgrass Rhizosphere	MVIEEEILARVRAAKAWDKNARLEDFQVTAAENGFVLINLKTRRAQLLYDEDSELHDLEQ
Ga0070678_1000613972	3300005456	Miscanthus Rhizosphere	MVIDEEILARIRAAKAWDKRARLEDFQVQAAENGFVLINLKTRRVQLLYDEDSELHDLEQLFPENSKHSRPLL*
Ga0070685_103391201	3300005466	Switchgrass Rhizosphere	MVIDEEIMARIRAAKAWDKDARLEDFQIKAAENGFVLINLKTRRAQLLYDDDSELTDLEQLFPENRKYGRPLL*
Ga0077121_100676277	3300005511	Arabidopsis Rhizosphere	MVIEEEILARIRAAKTWDSSARVEDFQVQAADNGFVLINLKTRRAQLLYDEDSELSDLEQLFPENEKRYRGLL*
Ga0070665_1000140422	3300005548	Switchgrass Rhizosphere	MVIDEEILARVRAAKVWDKNARLEDFQIRAAENGFVLINLKTRRAQLLYDDDSELNDLEQLFPENRKYGRPLL*
Ga0068864_1018899811	3300005618	Switchgrass Rhizosphere	MVIEEEILARVRAAKAWDKNARLEDFQVTAAENGFVLINLKTRRAQLLYDEDSKLHDLEQLFPAAKS*
Ga0068866_100790562	3300005718	Miscanthus Rhizosphere	TLMSCGRRMNIDEEILARIRAAKAWDREAKLDDFQLKAAENGFVLINLKTRRAQLIYDEDSELSDLDQLFAKS*
Ga0068858_1012302342	3300005842	Switchgrass Rhizosphere	LVNAFMDIDEEIRARIRATKAWDKDARLQDFQIKAAANGYVLINLKTRRAHLIYDEDSELPGLETLFPRN*
Ga0068860_1020711242	3300005843	Switchgrass Rhizosphere	MVIDEEILARIRAAKAWDKRARLEDFQVQAAENGFVLINLKTRRAQLLYDDDSELNDLEQLFPENRKYGRPLL*
Ga0070712_1004947751	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	AFMDIDEEIRARIRATKAWDKDARLQDFQIKAAANGYVLINLKTRRAHLIYDEDSELPGLETLFPRN*
Ga0097621_1001533192	3300006237	Miscanthus Rhizosphere	VGLTLVNAFMDIDEEIRARIRATKAWDKDARLQDFQIKAAANGYVLINLKTRRAHLIYDEDSELPGLETLFPRN*
Ga0068871_1001987532	3300006358	Miscanthus Rhizosphere	VGLTLVNAFMDIDEEIRARIRATKAWDKDSRLQDFQVKAAENGYVLINLKTRRAHLIYDEDSELPGLETLFPRN*
Ga0068865_1010052681	3300006881	Miscanthus Rhizosphere	MARIDGAKAWDKDSKPEDFQIKAAENGYVLINLKTRRAQLIYDDDSDLGDFRKLFPN
Ga0105240_112608862	3300009093	Corn Rhizosphere	MVIDEEILARIRAAKVWDKDARLEDFQVRAEENGFVLINLKTRRAQLLYDDDSELSDLEQLFPENQKYGRPLL*
Ga0105240_121978741	3300009093	Corn Rhizosphere	MSINDEILARIRAAKVWDKDSKLEDFQVRAESNGFVLVNLRTGRSQLLYDDESELKDLAELFPD
Ga0105245_100041344	3300009098	Miscanthus Rhizosphere	MNIDEEILARIRAAKAWDREAKLDDFQLKAAENGFVLINLKTRRAQLIYDEDSELSDLDQLFAKS*
Ga0105245_123025712	3300009098	Miscanthus Rhizosphere	MDIDEEIMARIRAAKVWDKDSKLEDFQIRAAENGFVLINIKTGRAQLIYDENSELTDLAKLFPEGMLKEQPKE*
Ga0105241_118683942	3300009174	Corn Rhizosphere	MLMQLDVLTLEARMIIDEEIIARIRAAKAWDKEARLEDFQIKAAGNGFVLLNLKTGRAQLLYDEDSELHDLDQLFPEGTPENSAQRRGSMR*
Ga0105241_124892411	3300009174	Corn Rhizosphere	MVIDEEILARIRAAKVWDKDARLEDFQVRAEENGFVLINLKTRRAQLLYDDDSELSDLEQLFPANQKYGRPLL*
Ga0105242_107026892	3300009176	Miscanthus Rhizosphere	MDIDEEIRARIRATKAWDKDSRLQDFQVKAAENGYVLINLKTRRAHLIYDEDSELPGLETLFPRN*
Ga0105248_119465391	3300009177	Switchgrass Rhizosphere	MVIEEEILARIRAAKAWDKDARLEDFQVMAADNGFVLINLKTRRAQLLYDEDSKLHDLEQLFPATKS*
Ga0105237_102879764	3300009545	Corn Rhizosphere	MVIEEEILARVRAAKAWDKNARLEDFQVTAAENGFVLINLKTRRAQLLYDEDSKLHDLEQLFPATKS*
Ga0126373_109421833	3300010048	Tropical Forest Soil	MDIDEEIIARIRAARVWDKGSKLEDFQIKAAENGYVLINLKTRRCQLIYDELSELHDLERLFPGGFGAKR*
Ga0126373_120930081	3300010048	Tropical Forest Soil	MNIDEVLARIRAAKVWNKEAKLKDFQIKAAGNGYILINLKTGRAQLIYDEFSELHDLEQIFPEIHSGKH*
Ga0126370_117152282	3300010358	Tropical Forest Soil	MNIDDEILARIRAAKVWNKDAKLEDFQIKAAGNGYVLINLKTGRAQLIYDEFSELHDLEQIFPEIYSGK
Ga0126378_116924421	3300010361	Tropical Forest Soil	MDIEEEVRARVRAAKAWDKDAKLEDFQIKATENGYVLINLKTRRAQLIYDDQSELHDWARLFPDSTGEER*
Ga0126379_101163691	3300010366	Tropical Forest Soil	MNIDDEILARIRAAKVWNKDAKLEDFQIKAAGNGYVLINLKTGRAQLIYDEFSELHDLERIFPEIYSGKH*
Ga0126379_108326152	3300010366	Tropical Forest Soil	MDIEEEVRARVRAAKAWDKDAKLEDFQIKATENGYVLINLKTRRAQLIYDDQSELHDWARLFPDGFGEQP*
Ga0134125_100536824	3300010371	Terrestrial Soil	MELEEEILARVRAAKAWDKNAKLDDFQLKAAENGSILINLKTRRAQLIYDDESELHDLEQVLGPDTPTADK*
Ga0105239_125468821	3300010375	Corn Rhizosphere	SLLAQRRSRYGATPMVIEEEILARIRAAKAWDKDARLEDFQVMAADNGFVLINLKTRRAQLLYDEDSKLHDLEQLFPAAKS*
Ga0126381_1000512501	3300010376	Tropical Forest Soil	MDIDEEIIARIRAARVWDKGSKLEDFQIKAAENGYVLINLKTRRCQLIYDELSELHDLERLFPGGFGAKL*
Ga0134126_107361131	3300010396	Terrestrial Soil	EEIRARIRATKAWDKDSRLQDFQVKAAENGYVLINLKTRRAHLIYDEDSELPGLETLFPRN*
Ga0134124_114677271	3300010397	Terrestrial Soil	AGPDWRRCDKYGSPGSLLAQRRSQYGATPMVIEEEILARVRAAKAWDKNARLEDFQVTAAENGFVLINLKTRRAQLLYDEDSELHDLEQLFPAAKS*
Ga0134127_122342722	3300010399	Terrestrial Soil	MIIDDEILGRIRAAKVWDKNSRLEDFQIRAGENGFVLLNLRTRRAQLLYDDESELHDLEQLFPGGLAPSR*
Ga0134122_108272962	3300010400	Terrestrial Soil	MNIDEEILARIRAAKAWDREAKLDDFQLKAAENGFVLINLKTRRAQLIYDEDSELSDLDQLFADAPA
Ga0150985_1048523321	3300012212	Avena Fatua Rhizosphere	MELEEEILARVRAAKAWDKSAELTDFQLKAAENGSVLINLKTRRAQLIYDDESELHDIEQVLGPDGPKNQK*
Ga0150985_1057607212	3300012212	Avena Fatua Rhizosphere	MELEEEILARVRAAKAWDKNAKLDDFQLKAAENGSILINLKTRRAQLIYDDESELHDIEQVLGPDTPSADK*
Ga0150985_1105508742	3300012212	Avena Fatua Rhizosphere	MELEEEILARVRAAKAWDKKAKLTDFQLKAAENGSVLINLKTRRAQLLYDDESDLHDLEQVLGSETSPGPK*
Ga0150985_1150821522	3300012212	Avena Fatua Rhizosphere	MMELEEEILARIKAAKAWDKGAKLTDFQLKAAENGSVLINLKTRRAQLIYDDDSELHDIEQVLGQDNPEAAK*
Ga0150985_1198657232	3300012212	Avena Fatua Rhizosphere	LEEEILARVRAAKAWDKNAKLDDFQLKAAENGSILINLKTRRAQLIYDDESELHDIEQVLGPDTPSADK*
Ga0150984_1022160501	3300012469	Avena Fatua Rhizosphere	MELDEEILARIRAAKAWDKNSKPSDFQLKVAENGSVLVNLKTRRAQLIYDDESELHDFEKVMGPDRPQGSK*
Ga0157374_123849013	3300013296	Miscanthus Rhizosphere	MGRRRVDIDKEIMARINGSKAWDKDSKPEDFQIKAAENGYVLINLKTRRAQLIYDDDSELGDFQ
Ga0163162_105385373	3300013306	Switchgrass Rhizosphere	MVIEEEILARVRAAKAWDKNARLEDFQVTAAENGFVLINLKTRRAQLLYDEDSELHDLEQLFPATKS*
Ga0157372_123267221	3300013307	Corn Rhizosphere	MVIDEEILARIRAAKAWDKRARLEDFQVQAAENGFVLINLKTRRVQLLYDEDSELHDLEQLFPDNSKRCRPLL*
Ga0181530_103514582	3300014159	Bog	MHIDDEILAQIRAAKVWDKDVMLEDFQIKAAGNGYVLIKLKTRRAQLIYEEFSELHDLEQLFPDR*
Ga0163163_122472072	3300014325	Switchgrass Rhizosphere	MVIEEEILARIRAAKAWDKDARLEDFQVMAADNGFVLINLKTRRAQLLYDEDSKLHDLEQLFPAAKS*
Ga0182024_128808731	3300014501	Permafrost	MDLDEEVLARIKASKAWDKDSKMSDFQLKPSENGTVLINLKTRRAQLLYDDDSELHDLEV
Ga0157379_102939572	3300014968	Switchgrass Rhizosphere	MDIDEEIMARIRAAKVWDKDSKLEDFQIRAAENGFVLINIKTGRAQLIYDENSELTDLAKLFPEGMLKGLPKE*
Ga0157376_103912282	3300014969	Miscanthus Rhizosphere	MDIDEEIRARIRATKAWDKDARLQDFQVKAAENGYVLINLKTRRAHLIYDEDSELPGLETLFPRN*
Ga0132258_120743243	3300015371	Arabidopsis Rhizosphere	MVIDEEILARIRAAKAWDKRARLEDSQVQAAENGFVLINLKTRRVQLLYDEDSELHDLEQLFPENSKHSRPLL*
Ga0193728_10733442	3300019890	Soil	MALDDEILARIRAAKAWDKDAKPEDFQIHAAENGSVLINLKTRRAQLIYDEDSELRDMQELFPNLIAFPK
Ga0210401_100460406	3300020583	Soil	MQIEDEIWQRIRAAKVWDKDAKLEDFQIKAAGNGYVLINLKTRRAQLVYDEFSELHDLEQLFPERYGWK
Ga0210401_101794881	3300020583	Soil	MDIDKEILARIQAAKAWDKDAKLEDFQIKAAGNGYVLINLKSRRAQLIYDEFSELHDLERLFPSHPSEK
Ga0210404_100906592	3300021088	Soil	MDIDEEIKARIRAAKVWDKEARLEDFQLRAAENGYVLINLKTRRAQLIYDENSVLTDMDRLFPKK
Ga0210388_100350004	3300021181	Soil	MCIDDEIRARVRAAKAWDKEARLEDFQIRAAGNGYVLINLKTRRAQLIYDELSELSDLQRLFPEH
Ga0126371_109764502	3300021560	Tropical Forest Soil	MDIDEEIIARIRAARVWDKGSKLEDFQIKAAENGYVLINLKTRRCQLIYDELSELHDLERLFPGGFGAKR
Ga0126371_132703161	3300021560	Tropical Forest Soil	MNIDDEILARIRAAKVWNKEAKFEDFQIKAAGNGYVLINLKTGRAQLIYDEFSELHDLEQIFPEIYSGKH
Ga0247776_102184081	3300023275	Plant Litter	MPCNLYGRNMELDDELLARIRAAASFDKTVKVSDFQLRAGTNGSVLINLKTGRAQLIYDDESELHDLDDLKIRDPERTR
Ga0209758_10624221	3300025297	Arabidopsis Rhizosphere	MVIEEEILARIRAAKTWDSSARVEDFQVQAADNGFVLINLKTRRAQLLYDEDSELSDLEQLFPENEKRYRGLL
Ga0207642_100246042	3300025899	Miscanthus Rhizosphere	MNIDEEILARIRAAKAWDREAKLDDFQLKAAENGFVLINLKTRRAQLIYDEDSELSDLDQLFAKS
Ga0207680_100913722	3300025903	Switchgrass Rhizosphere	MVIEEEILARVRAAKAWDKNARLEDFQVTAAENGFVLINLKTRRAQLLYDEDSELHDLEQLFPAAKS
Ga0207680_113635681	3300025903	Switchgrass Rhizosphere	MVIDEEILARIRAAKAWDKRARLEDFQVQAAENGFVLINLKTRRVQLLYDEDSELHDLEQLFPENSKHSRPLL
Ga0207699_107864792	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	EEIMARVRAAKVWDKEAKLEDFQIRAEENGFVLINLKTRRAQLLYDDDSELHDLEQLFPATKA
Ga0207705_100795072	3300025909	Corn Rhizosphere	MSINDEILARIRAAKVWDKDSKLEDFQIRAESNGFVLVNLRTGRAQLLYDDESELKDLAELFPDGVLSFKAPLNE
Ga0207654_102601402	3300025911	Corn Rhizosphere	MDVEDEIRARIRAAKAWDKQARLEDFQVRAAENGFVLINLKTRRAHLIYDEDSELPGLETLFPKN
Ga0207654_111892621	3300025911	Corn Rhizosphere	MIIDDEILARIRAAKVWDKNSRLEDFQIRAGENGFVLLNLRTRRAQLLYDDESELHDLEQLFPGGLAPSR
Ga0207695_101045027	3300025913	Corn Rhizosphere	MVIDEEILARIRAAKVWDKDARLEDFQVRAEENGFVLINLKTRRAQLLYDDDSELSDLEQLFPENQKYGRPLL
Ga0207671_111628612	3300025914	Corn Rhizosphere	MVIEEEILARVRAAKAWDKNARLEDFQVTAAENGFVLINLKTRRAQLLYDEDSKLHDLEQLFPATKS
Ga0207693_114160771	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	VGLTLVNAFMDIDEEIRARIRATKAWDKDARLQDFQIKAAANGYVLINLKTRRAHLIYDEDSELPGLETLFPRN
Ga0207659_114679171	3300025926	Miscanthus Rhizosphere	QKMELEEEILARIRAAKAWDKTAKLTDFQLKAAENGSILINLKTRRAQLIYDDESELHDLEKVLGPDNPEQPK
Ga0207644_110126782	3300025931	Switchgrass Rhizosphere	LVNAFMDIDEEIRARIRATKAWDKDARLQDFQIKAAANGYVLINLKTRRAHLIYDEDSELPGLETLFPRN
Ga0207644_118806291	3300025931	Switchgrass Rhizosphere	LAQRRSRYGATPMVIEEEILARVRAAKAWDKNARLEDFQVTAAENGFVLINLKTRRAQLLYDEDSELHDLEQLFPAAKS
Ga0207709_106233623	3300025935	Miscanthus Rhizosphere	IDEEILARIRAAKAWDKRARLEDFQVQAAENGFVLINLKTRRVQLLYDEDSELHDLEQLFPENSKHSRPLL
Ga0207691_115316352	3300025940	Miscanthus Rhizosphere	LSPFAIVRAFMDVEDEIRARIRAAKAWDKQARLEDFQVRAAENGFVLINLKTRRAHLIYDEDSELPGLETLFPKN
Ga0207689_109193782	3300025942	Miscanthus Rhizosphere	MVIEEEILARIRAAKAWDKDARLEDFQVTAADNGFVLINLKTRRAQLLYDEDSELHDLEQLFPATKS
Ga0207667_118724402	3300025949	Corn Rhizosphere	MVIDEEILARIRAAKAWDKRARLEDFQVQAAENGFVLINLKTRRAQLLYDEDSEL
Ga0207639_105127721	3300026041	Corn Rhizosphere	IAPHMVIDEEILARIRAAKVWDKDARLEDFQVRAEENGFVLINLKTRRAQLLYDDDSELSDLEQLFPENQKYGRPLL
Ga0207639_110442582	3300026041	Corn Rhizosphere	MDHPVPRKRFGCGTIIIAVHMVIEEEILARIRAAKVWDKDARLEDFQLQAAENGCVLINLKTRRVQLLYDEDSELHDLEQLFPENSKHSRPLL
Ga0207676_123451942	3300026095	Switchgrass Rhizosphere	MVIDEEILARIRAAKAWDKRARLEDFQVQAAEIGFVLINLKTRRVQLLYDEDSELHDLEQLFPENSKHSRPLL
Ga0207674_102051403	3300026116	Corn Rhizosphere	MVIEEEILARVRAAKAWDKNARLEDFQVTAAENGFVLINLKTRRAQLLYDEDSELHDLEQFFPAAKS
Ga0268266_102870741	3300028379	Switchgrass Rhizosphere	MVIDEEILARVRAAKVWDKNARLEDFQIRAAENGFVLINLKTRRAQLLYDDDSELNDLEQLFPENRKYGRPLL
Ga0302152_102897262	3300028572	Bog	MELGDEILARVRAAKAWDKDSKLSDFQLKAAENGSVLINLKTRRAQLLYDDDSELHDLNDLHIMDAFGMKSANEG
Ga0302197_104901802	3300028873	Bog	MELGDEILARVRAAKAWDKDSKLSDFQLKAAENGSVLINLKTRRAQLLYDDDSELHDLNDLHIMDALGMKSANEG
Ga0311359_103209412	3300029914	Bog	MELGDEILARVRAAKAWDKDSKLSDFQLKAAENGSVLINLKTRRAQLLYDDDSELHDLNDLHIM
Ga0311344_107106581	3300030020	Bog	MELGDEILARVRAAKAWDKDSKLSDFQLKASENGSVLINLKTRRAQLLYDDDSELHDLNDLHIMDAFGMKSANEG
Ga0074000_113791411	3300030860	Soil	MELEEEIAARINAAKSLDPNLEPADFQLRVAGNGSVLINMKTSRAQLIYDDESKLHDLEDLAISEKHDEK
Ga0302187_104960362	3300031259	Bog	MELGDEILARVRAAKAWDKDSKLSDFQLKAAENGSVLINLKTRRAQLLYDDDSELHDLN
Ga0310686_1078456381	3300031708	Soil	MSLEDEILSRIRAARAWDKDAKLENFQLRVAGNGSVIINLKTRRAQLIYDEDSELHDLQELFPN
Ga0310686_1113250422	3300031708	Soil	VIRRIDPANVLFSNGCVMHIDDEIWARIRAAKVWDKDVTLEDFQIKAAGNGYVLINLKTRRAQLIYDEFSELHDLEQLFPDRYGGKR
Ga0310686_1195146914	3300031708	Soil	MDIDEEIRARIRAAKAWDKDAQLGDFQIKAAENGYVLINLKTRRAQLIYDEFSELSDLKELFPERYGANSAHHSFGRPRHTG
Ga0307476_110414112	3300031715	Hardwood Forest Soil	MQIEDEIWERIRAAKVWDKDAKLQDFQIKAAGNGYVLINLKTRRAQLIYDEFSELHDLEQLFPERYGWK
Ga0310813_110347061	3300031716	Soil	AAPMVIDEEILARIRAAKAWDKRARLEDFQVQAAENGFVLINLKTRRAQLLYDEDSELHDLEQLFPENRKRSRPLL
Ga0307469_105930001	3300031720	Hardwood Forest Soil	MDIDEEIRARIRATKAWDKDARLQDFQVKATENGYVLINLKTRRAHLIYDEDSELPGM
Ga0307479_109230372	3300031962	Hardwood Forest Soil	MDIDEEILARVLAAKAWDRNAKLEDFQIKAAGNGYVLINLKTRRAQLIYDEFSELHDLEQILPEGQREKY
Ga0318562_100295032	3300032008	Soil	MDINEEIKARIRAAKVWDKEAKLEDFQIRAAANGYVLINLKTRRCQLIYDELSELHDLERLFPGGFGAKR
Ga0307471_1036110651	3300032180	Hardwood Forest Soil	MDIDEEILARVLAAKAWDRNAKLEDFQIKAAGNGYVLINLKTRRAQLIYDEFSELHDLEQILREGQREKD
Ga0310812_105470731	3300032421	Soil	MVIVEEILARIRAAKAWDKRARLEDFQVQAAENGFVLINLKTRRVQLLYDEDSEL
Ga0335085_100088972	3300032770	Soil	MDIDEEIKARVRAAKAWDKDAKLEDFQIKAAQNGYVLTNLKTRRAQLIYDEFSELHDLEQLFPERFGGKPIGTG
Ga0310811_101569723	3300033475	Soil	MDIEDEIWARIRATKAWDKKARLEDFQVRAAENGFVLINLKTRRAHLIYDEDSELPGLENILPKH
Ga0310811_102522633	3300033475	Soil	MVIDEEILARIRAAKAWDKRARLEDFQVQAAENGFVLINLKTRRAQLLYDEDSELHDLEQLFPENRKRSRPLL
Ga0310811_103897901	3300033475	Soil	MIIDEEIMARIRATKAWDKEARLEDFQIKAAENGIVLINLKTGRAQLLYDEDSELHDLDQLFPEGTPENSAQRRGSMR
Ga0310811_108084512	3300033475	Soil	MVIEEEILARVRAAKAWDKQARLEDFQVTAAENGFVLINLKTRRAQLLYDEDSELTDLEQLFPRDRKYGRPLL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F080316

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences