Metagenome / Metatranscriptome Family F080310

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F080310
Family Type	Metagenome / Metatranscriptome
Number of Sequences	115
Average Sequence Length	63 residues
Representative Sequence	VPDPGRPPDVSTLTPGQLERTRRELAAALALARPGSPAHVPIQAHLAAIDAELASRAGQQP
Number of Associated Samples	80
Number of Associated Scaffolds	115

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	62.50 %
% of genes near scaffold ends (potentially truncated)	26.09 %
% of genes from short scaffolds (< 2000 bps)	75.65 %
Associated GOLD sequencing projects	69
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.73

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (56.522 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil (24.348 % of family members)
Environment Ontology (ENVO)	Unclassified (31.304 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (40.000 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Fibrous	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 42.70% β-sheet: 0.00% Coil/Unstructured: 57.30%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.73
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.73
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Structural matches with SCOPe domains

SCOP family	SCOP domain	Representative PDB	TM-score
a.2.2.1: Ribosomal protein L29 (L29p)	d1vq8v1	1vq8	0.81543
a.7.8.1: GAT domain	d1wrda1	1wrd	0.8083
a.118.1.25: RPA1889-like	d2i9ca1	2i9c	0.80811
a.118.1.1: Armadillo repeat	d1wa5c_	1wa5	0.80166
f.20.1.1: Clc chloride channel	d4enea_	4ene	0.79298

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 115 Family Scaffolds
PF13560	HTH_31	13.91
PF04149	DUF397	6.09
PF07508	Recombinase	4.35
PF01042	Ribonuc_L-PSP	1.74
PF07110	EthD	1.74
PF00067	p450	1.74
PF01381	HTH_3	1.74
PF03450	CO_deh_flav_C	0.87
PF04545	Sigma70_r4	0.87
PF08240	ADH_N	0.87
PF13505	OMP_b-brl	0.87
PF13936	HTH_38	0.87
PF01695	IstB_IS21	0.87
PF14346	DUF4398	0.87
PF13581	HATPase_c_2	0.87
PF13549	ATP-grasp_5	0.87
PF00535	Glycos_transf_2	0.87
PF03167	UDG	0.87
PF08751	TrwC	0.87
PF13561	adh_short_C2	0.87
PF01555	N6_N4_Mtase	0.87

COG ID	Name	Functional Category	% Frequency in 115 Family Scaffolds
COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	Replication, recombination and repair [L]	4.35
COG0251	Enamine deaminase RidA/Endoribonuclease Rid7C, YjgF/YER057c/UK114 family	Defense mechanisms [V]	1.74
COG2124	Cytochrome P450	Defense mechanisms [V]	1.74
COG0692	Uracil-DNA glycosylase	Replication, recombination and repair [L]	0.87
COG0863	DNA modification methylase	Replication, recombination and repair [L]	0.87
COG1041	tRNA G10 N-methylase Trm11	Translation, ribosomal structure and biogenesis [J]	0.87
COG1484	DNA replication protein DnaC	Replication, recombination and repair [L]	0.87
COG1573	Uracil-DNA glycosylase	Replication, recombination and repair [L]	0.87
COG2189	Adenine specific DNA methylase Mod	Replication, recombination and repair [L]	0.87
COG3663	G:T/U-mismatch repair DNA glycosylase	Replication, recombination and repair [L]	0.87

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.52 %
All Organisms	root	All Organisms	43.48 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.52 %
cellular organisms	root	All Organisms → cellular organisms	43.48 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.52 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	43.48 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.52 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	39.13 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.52 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	39.13 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.52 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	32.17 %
Rubrobacteria	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria	0.87 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.52 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	6.96 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	6.96 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	4.35 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	1.74 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	0.87 %
Rubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales	0.87 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.87 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.52 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	6.96 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	4.35 %
Nocardiopsaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Nocardiopsaceae	1.74 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	1.74 %
Thermomonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae	1.74 %
Treboniaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae	0.87 %
Nocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae	0.87 %
Rubrobacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	0.87 %
Streptosporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	0.87 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.87 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.52 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	4.35 %
Actinophytocola	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Actinophytocola	1.74 %
Actinomadura	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura	1.74 %
Nocardiopsis	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Nocardiopsaceae → Nocardiopsis	1.74 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	1.74 %
unclassified Rubrobacteraceae	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae	0.87 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	0.87 %
Trebonia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia	0.87 %
Nocardia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia	0.87 %
Streptosporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	0.87 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.52 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	4.35 %
Nocardiopsis mwathae	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Nocardiopsaceae → Nocardiopsis → Nocardiopsis mwathae	1.74 %
Actinophytocola	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Actinophytocola	1.74 %
Trebonia kvetii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	0.87 %
Nocardia miyunensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia → Nocardia miyunensis	0.87 %
Streptomyces kaniharaensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces kaniharaensis	0.87 %
Rubrobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	0.87 %
Actinomadura madurae	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura madurae	0.87 %
Bradyrhizobium sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	0.87 %
Streptosporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	0.87 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.87 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300004091\|Ga0062387_100572949	Not Available	803	Open in IMG/M
3300004635\|Ga0062388_102483421	Not Available	543	Open in IMG/M
3300005329\|Ga0070683_101354100	Not Available	684	Open in IMG/M
3300005332\|Ga0066388_100098798	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3375	Open in IMG/M
3300005434\|Ga0070709_11449153	Not Available	557	Open in IMG/M
3300005435\|Ga0070714_100188487	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1881	Open in IMG/M
3300005436\|Ga0070713_100249512	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	1618	Open in IMG/M
3300005437\|Ga0070710_11128972	Not Available	577	Open in IMG/M
3300005439\|Ga0070711_101024198	Not Available	709	Open in IMG/M
3300005467\|Ga0070706_102014227	Not Available	523	Open in IMG/M
3300005471\|Ga0070698_100004682	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	15030	Open in IMG/M
3300005471\|Ga0070698_100762914	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces kaniharaensis	911	Open in IMG/M
3300005471\|Ga0070698_101480604	Not Available	630	Open in IMG/M
3300005591\|Ga0070761_10759731	Not Available	609	Open in IMG/M
3300006175\|Ga0070712_100708717	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	858	Open in IMG/M
3300006175\|Ga0070712_100771506	Not Available	824	Open in IMG/M
3300006804\|Ga0079221_11779299	Not Available	504	Open in IMG/M
3300006903\|Ga0075426_10526468	All Organisms → cellular organisms → Bacteria	879	Open in IMG/M
3300006954\|Ga0079219_11000483	Not Available	693	Open in IMG/M
3300009090\|Ga0099827_10116850	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Nocardiopsaceae → Nocardiopsis → Nocardiopsis mwathae	2142	Open in IMG/M
3300009090\|Ga0099827_10591502	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	957	Open in IMG/M
3300009098\|Ga0105245_10957177	Not Available	899	Open in IMG/M
3300009520\|Ga0116214_1098836	Not Available	1073	Open in IMG/M
3300009525\|Ga0116220_10457808	Not Available	575	Open in IMG/M
3300009672\|Ga0116215_1029273	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2537	Open in IMG/M
3300009698\|Ga0116216_10214906	Not Available	1178	Open in IMG/M
3300009698\|Ga0116216_10613526	Not Available	655	Open in IMG/M
3300009700\|Ga0116217_10053530	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2910	Open in IMG/M
3300009700\|Ga0116217_10211475	Not Available	1271	Open in IMG/M
3300009700\|Ga0116217_10367620	All Organisms → cellular organisms → Bacteria	916	Open in IMG/M
3300009700\|Ga0116217_10936071	Not Available	531	Open in IMG/M
3300009792\|Ga0126374_10311822	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1060	Open in IMG/M
3300009824\|Ga0116219_10434578	Not Available	730	Open in IMG/M
3300009824\|Ga0116219_10670517	Not Available	568	Open in IMG/M
3300010359\|Ga0126376_11890161	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura madurae	637	Open in IMG/M
3300010379\|Ga0136449_100175840	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	4133	Open in IMG/M
3300010379\|Ga0136449_100219450	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3580	Open in IMG/M
3300010379\|Ga0136449_100616310	Not Available	1845	Open in IMG/M
3300010379\|Ga0136449_101276875	Not Available	1147	Open in IMG/M
3300010379\|Ga0136449_102609508	Not Available	720	Open in IMG/M
3300010396\|Ga0134126_12448723	Not Available	568	Open in IMG/M
3300010876\|Ga0126361_10534457	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	2659	Open in IMG/M
3300010876\|Ga0126361_10628947	Not Available	611	Open in IMG/M
3300010880\|Ga0126350_11965388	Not Available	775	Open in IMG/M
3300012096\|Ga0137389_10126924	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2063	Open in IMG/M
3300012199\|Ga0137383_10171946	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1588	Open in IMG/M
3300012201\|Ga0137365_10035294	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3830	Open in IMG/M
3300012201\|Ga0137365_10056876	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2955	Open in IMG/M
3300012201\|Ga0137365_10098305	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Actinophytocola	2203	Open in IMG/M
3300012201\|Ga0137365_10901789	Not Available	645	Open in IMG/M
3300012207\|Ga0137381_10449535	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	1124	Open in IMG/M
3300012209\|Ga0137379_10602942	Not Available	1005	Open in IMG/M
3300012210\|Ga0137378_10110286	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia → Nocardia miyunensis	2534	Open in IMG/M
3300012211\|Ga0137377_11595317	Not Available	577	Open in IMG/M
3300012353\|Ga0137367_10140652	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1765	Open in IMG/M
3300012356\|Ga0137371_10269008	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1330	Open in IMG/M
3300012359\|Ga0137385_11048033	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	672	Open in IMG/M
3300012359\|Ga0137385_11558455	Not Available	525	Open in IMG/M
3300012532\|Ga0137373_10691607	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura	761	Open in IMG/M
3300012930\|Ga0137407_10264898	Not Available	1561	Open in IMG/M
3300014325\|Ga0163163_13123462	Not Available	516	Open in IMG/M
3300016422\|Ga0182039_11350214	Not Available	647	Open in IMG/M
3300017926\|Ga0187807_1083520	Not Available	999	Open in IMG/M
3300017926\|Ga0187807_1227575	Not Available	608	Open in IMG/M
3300017926\|Ga0187807_1342058	Not Available	502	Open in IMG/M
3300017955\|Ga0187817_10856461	Not Available	581	Open in IMG/M
3300021478\|Ga0210402_11085388	Not Available	728	Open in IMG/M
3300025906\|Ga0207699_10256767	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1206	Open in IMG/M
3300025906\|Ga0207699_10762484	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	710	Open in IMG/M
3300025910\|Ga0207684_10121883	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	2236	Open in IMG/M
3300025915\|Ga0207693_10205295	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	1549	Open in IMG/M
3300025915\|Ga0207693_10778431	Not Available	738	Open in IMG/M
3300025922\|Ga0207646_10568985	Not Available	1018	Open in IMG/M
3300025928\|Ga0207700_10270612	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	1458	Open in IMG/M
3300025928\|Ga0207700_10460838	Not Available	1121	Open in IMG/M
3300025929\|Ga0207664_11713415	Not Available	551	Open in IMG/M
3300026551\|Ga0209648_10600084	Not Available	606	Open in IMG/M
3300027110\|Ga0208488_1048442	Not Available	740	Open in IMG/M
3300027662\|Ga0208565_1120828	Not Available	778	Open in IMG/M
3300027882\|Ga0209590_10208868	All Organisms → cellular organisms → Bacteria	1236	Open in IMG/M
3300027882\|Ga0209590_10214732	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Nocardiopsaceae → Nocardiopsis → Nocardiopsis mwathae	1220	Open in IMG/M
3300027905\|Ga0209415_10170191	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2133	Open in IMG/M
3300027905\|Ga0209415_10238867	All Organisms → cellular organisms → Bacteria	1652	Open in IMG/M
3300028536\|Ga0137415_10496197	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	1029	Open in IMG/M
3300029943\|Ga0311340_10845850	Not Available	766	Open in IMG/M
3300030056\|Ga0302181_10042631	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Actinophytocola	2438	Open in IMG/M
3300030494\|Ga0310037_10298388	Not Available	687	Open in IMG/M
3300030503\|Ga0311370_10586228	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	1341	Open in IMG/M
3300030707\|Ga0310038_10289772	Not Available	743	Open in IMG/M
3300031708\|Ga0310686_102633456	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3601	Open in IMG/M
3300031805\|Ga0318497_10455198	Not Available	717	Open in IMG/M
3300032064\|Ga0318510_10103488	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	1086	Open in IMG/M
3300032067\|Ga0318524_10376192	Not Available	739	Open in IMG/M
3300032067\|Ga0318524_10640163	Not Available	560	Open in IMG/M
3300032160\|Ga0311301_10094229	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	5942	Open in IMG/M
3300032160\|Ga0311301_10172850	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3808	Open in IMG/M
3300032160\|Ga0311301_10179913	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3700	Open in IMG/M
3300032160\|Ga0311301_10427379	Not Available	2010	Open in IMG/M
3300032160\|Ga0311301_10835155	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	1257	Open in IMG/M
3300032160\|Ga0311301_11067395	Not Available	1056	Open in IMG/M
3300032770\|Ga0335085_11149702	Not Available	828	Open in IMG/M
3300032770\|Ga0335085_11972815	Not Available	593	Open in IMG/M
3300032782\|Ga0335082_10206381	Not Available	1863	Open in IMG/M
3300032783\|Ga0335079_10036497	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	5646	Open in IMG/M
3300032783\|Ga0335079_11042913	Not Available	831	Open in IMG/M
3300032805\|Ga0335078_10203842	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2743	Open in IMG/M
3300032828\|Ga0335080_10777852	Not Available	991	Open in IMG/M
3300032892\|Ga0335081_10163472	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	3155	Open in IMG/M
3300032892\|Ga0335081_10554493	Not Available	1430	Open in IMG/M
3300032897\|Ga0335071_10596803	Not Available	1056	Open in IMG/M
3300032954\|Ga0335083_10069458	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	3606	Open in IMG/M
3300032955\|Ga0335076_10371825	Not Available	1315	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	97.39%
Host-Associated	Host-Associated	2.61%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	92.17%
Aquatic	Environmental → Aquatic	5.22%
Plants	Host-Associated → Plants	2.61%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	89.57%
Freshwater	Environmental → Aquatic → Freshwater	5.22%
Peat	Environmental → Terrestrial → Peat	2.61%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.74%
Roots	Host-Associated → Plants → Roots	0.87%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	56.52%
Loam	Environmental → Terrestrial → Soil → Loam	21.74%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	11.30%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	5.22%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	2.61%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.74%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.87%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	48.70%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	18.26%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	11.30%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	5.22%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	3.48%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	3.48%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	2.61%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	1.74%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.74%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.74%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.87%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.87%

Habitat	Taxonomy	Distribution
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	24.35%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	18.26%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	15.65%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	11.30%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	4.35%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	3.48%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	2.61%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	2.61%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	1.74%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.74%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.74%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	1.74%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	1.74%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.87%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.87%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.87%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.87%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.87%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.87%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.87%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.87%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.87%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.87%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300004091	Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004635	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005591	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009520	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_1_NS metaG	Environmental	Open in IMG/M
3300009525	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_7_NC metaG	Environmental	Open in IMG/M
3300009672	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_2_FS metaG	Environmental	Open in IMG/M
3300009698	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG	Environmental	Open in IMG/M
3300009700	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300009824	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_6_BS metaG	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010876	Boreal forest soil eukaryotic communities from Alaska, USA - W5-5 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300010880	Boreal forest soil eukaryotic communities from Alaska, USA - C5-1 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012353	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_80_16 metaG	Environmental	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012532	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_80_16 metaG	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300017926	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_2	Environmental	Open in IMG/M
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300027110	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF001 (SPAdes)	Environmental	Open in IMG/M
3300027662	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_2_FS metaG (SPAdes)	Environmental	Open in IMG/M
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027905	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300029943	I_Palsa_N3 coassembly	Environmental	Open in IMG/M
3300030056	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E3_3	Environmental	Open in IMG/M
3300030494	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG (v2)	Environmental	Open in IMG/M
3300030503	III_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030707	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG (v2)	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031805	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23	Environmental	Open in IMG/M
3300032064	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f17	Environmental	Open in IMG/M
3300032067	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f22	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300032782	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.1	Environmental	Open in IMG/M
3300032783	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3	Environmental	Open in IMG/M
3300032805	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2	Environmental	Open in IMG/M
3300032828	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4	Environmental	Open in IMG/M
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental	Open in IMG/M
3300032897	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.5	Environmental	Open in IMG/M
3300032954	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.2	Environmental	Open in IMG/M
3300032955	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.5	Environmental	Open in IMG/M
3300033134	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.2	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0062387_1005729493	3300004091	Bog Forest Soil	VPDPGRPPEVSALTSGELERARRELAASLALGRPGSPARGPILAHLTAVDTELDQRRTAGTGTR*
Ga0062388_1024834211	3300004635	Bog Forest Soil	MPDPGRPPNLSRLTSGELERTRRELAASLALARPGSPARGPILTHISAIDAELAQRAAGRPGELPGSPLP*
Ga0070683_1013541002	3300005329	Corn Rhizosphere	MPDPGRVHDVSALTAPELKRTRRELQAALALARPGSPAQAPILAHMAAIDAELANRADQQT*
Ga0066388_1000987981	3300005332	Tropical Forest Soil	VTDPGRPPDVSTLTSGELERTRRELAASLALARPDSPVRVPILAHLTAIDTELAGRNARQP*
Ga0070709_114491532	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MPDPGRAHDVSALTAPELERTRRELQAALALARPGSLAQTPILAHMAAIDAELASRADQQT*
Ga0070714_1001884872	3300005435	Agricultural Soil	VPDPGRPPDVSTLTPAELQRTRRELAAALALARPGSPAHLPIRTHLAAIDAELASRAGQRPQPPARP*
Ga0070713_1002495123	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MPDLGRVHDVSALTAPELERTRRELHAALALARPGSPAQAPILAHIAAIDAELADRADRADQQT*
Ga0070710_111289721	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MPDPGRAHDVSALTAPELERTRRELHAALALARPGSPAQAPILAHMAAIDAELANRADQQT*
Ga0070711_1010241982	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	PDPGRPPDVSTLTPAELQRTRRELAAALALARPGSPVHLPIRTHLAAIDAELASRAGQQPQPLARP*
Ga0070706_1020142271	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	LDLPQIPMPGPGRMPDVTGLTPGELERTRRELAASLALARPDSPARVPILAHLAAIDAELAGRDARQP*
Ga0070698_10000468219	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MPDPGRPRDVSTLTPRELEHARRELRAALALARPGSPAQVPILAHLAAIDAELAGRAGQQT*
Ga0070698_1007629141	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MPDPGRPPDVSDRTSRELERTRRELAASLALARPDSPARVPILAHMTAIDAELAGRDTRQP*
Ga0070698_1014806042	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	VHDVSALTAPELERTRRELHAALARPGSPTQTPILAHIAAIDAELANR
Ga0070761_107597312	3300005591	Soil	MPDPGRPPDVSGLTACELQRTRRDLATSLALLLPGSAACVPITTHISAIDSELARRDHDGHPGSPP*
Ga0070763_104908641	3300005610	Soil	MPDPGRLPAVSALTSGQLERTRRERAVSLALARPGSPARGPILIHISSIDAELA
Ga0070712_1007087173	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	PDPGRPPDVSTLTLGDLERTRRELAAALALARPGSASQVPIRTHLAAIDGELARRASQQQPRARP*
Ga0070712_1007715063	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MPDPGRAHDVSALTAPELERTRRELQAALALARPGSLAQTPILAYMAAIDAELASRADQQT*
Ga0079221_117792992	3300006804	Agricultural Soil	VPEPGRAPDVSALAPGELQQARRDLAAALALARPGSPAEATIRTHLAAIDAELDRRGDQHT*
Ga0075426_105264682	3300006903	Populus Rhizosphere	MPDPGRPPDVSTLTLRELERIRRELQASLALARPDSPARIPNLAHISAINIELAGRAGRQS*
Ga0079219_110004832	3300006954	Agricultural Soil	MPDPGRPPDVSTLTLRELERIRRELQASLALARPDSPARIPILAHISAINIELAGRAGRQS*
Ga0099827_101168503	3300009090	Vadose Zone Soil	MPDTGRTPDVSDMTSRELERTRRELAASLALARPDSPARGPILTHLTAIDAELAWRDVRQP*
Ga0099827_105915023	3300009090	Vadose Zone Soil	MPDPGRPPDVSDRTSRELERTRRELAASLALARPDSPARVPILAHMIAIDAELAGRDARQA*
Ga0105245_109571771	3300009098	Miscanthus Rhizosphere	MPDPGRVHDVSALTAPELERTMRELQAALALARPGSPAQTPILAHMAAIDAELASRADQQT*
Ga0116214_10988363	3300009520	Peatlands Soil	VTGPGRPPDVSTLTTGELERTRRELAASLALTRPGSPARAPIQAHMAPIAAELAA
Ga0116220_104578081	3300009525	Peatlands Soil	VTSPGRLPDVSELTSGELERTRRELAASLALLRPGSPAQVPILAHLTAIDHELAARTAPPP*
Ga0116215_10292733	3300009672	Peatlands Soil	MPDLARPHDVSMLTSPELEHARRELAAALALARPGSPAQVPIRAHLDAIDAELARRASRQA*
Ga0116216_102149063	3300009698	Peatlands Soil	VTSPGRPPDVSGLTSGELQRTRRELATSLALLRLGSPAQVPILAHMTAIDAELANRAAPPA*
Ga0116216_106135261	3300009698	Peatlands Soil	PHQGAPVTDPGRPPDVSGLTAGELDRTRRELAASLALLRPGSPAQVPILAHLTAIDHELAARTAPPP*
Ga0116217_100535303	3300009700	Peatlands Soil	VPDPARLPDVSTLTSLQLQHTRRELAAALTLARPSSPIRAPIQAHLAAIDAELAARAGQQPRP*
Ga0116217_102114751	3300009700	Peatlands Soil	MPDLARPHDVSMLTSPELEHARRELAAALALARPGSPAQVPIRAHLDAIDAELARRASRPA*
Ga0116217_103676201	3300009700	Peatlands Soil	VTGPGRPPDVSGLTTGELERARRELAASLALTRPGSPARAPIQAHMAAIAAELAARAGGFPGSRPSDP*
Ga0116217_109360711	3300009700	Peatlands Soil	PPVPDPARPPDVSTLTPGELQRTRRELAAALALARPGSTAQVPIRAYLDAIDAELARRADRQA*
Ga0126374_103118222	3300009792	Tropical Forest Soil	VTDPGRPPDVSTLTSGELERTRRELAASLALARPDSPTRVPILAHLTAIDTELAGRNARQP*
Ga0116219_104345781	3300009824	Peatlands Soil	MPDPGRPHDVSTLTPRELEQARRELQASLALARPGSPATVPILARLNAIDTE
Ga0116219_106705171	3300009824	Peatlands Soil	VSGLTAGELDRTRRELAASLALLRPGSPAQVPILAHLTAIDHELAARTAPPP*
Ga0126376_118901611	3300010359	Tropical Forest Soil	PGRPPDVSTLTSGELERTRRELAASLALARPDSPVRVPILAHLTAIDTELAGRNARQP*
Ga0136449_1001758404	3300010379	Peatlands Soil	VTDPGRPPDVSGLTAGELDRTRRELAASLALLRPGSPAQVPILAHLTAIDHELAARTAPPP*
Ga0136449_1002194503	3300010379	Peatlands Soil	VTAPGRSPDVSELTSGELERTRRDLAASLALLRPGSPAQVPILAHMTAIDAELAGRAAPPD*
Ga0136449_1006163102	3300010379	Peatlands Soil	VPDPGRPPDVSTLTPGQLERTRRELAAALALARPGSPAHVPIQAHLAAIDAELASRAGQQP*
Ga0136449_1012309112	3300010379	Peatlands Soil	MPDPGRPRDVSRLTSRGLERARRELQASLALARHDSPARVPIQAHLSAIDAELAQRTGQQP*
Ga0136449_1012768751	3300010379	Peatlands Soil	VTGPGRPPDVSGLTTGELERARRELAASLALTRPGSPARAPIQAHMAAIAAELAARADGFPGSRPSDP*
Ga0136449_1026095083	3300010379	Peatlands Soil	VTGPGRPPDVSTLTTGELERTRRELAASLALTRPGSPARAPIQAHMAAIAAELA
Ga0134126_124487231	3300010396	Terrestrial Soil	MPDPGRVHDVSALTAPELERTRRELQAALALARPGSPAQTPILAHMAAIDAELANRADQQT*
Ga0126361_105344573	3300010876	Boreal Forest Soil	MPDPGRPPAVSGMTSSELERTRRELAASLALARPDSRARAPILAHISAIDAELARRSRPARQVREPHA*
Ga0126361_106289471	3300010876	Boreal Forest Soil	VPDPGRPPDLTKLTSAELERSRRDLAVSQALARPGSPALTPIQAHLTAIDIELAQRTRQQP*
Ga0126350_119653882	3300010880	Boreal Forest Soil	VPDPGRPPDLATLTPAELQRTRRDLAAALALARPGAPARQPIGTHLAAIDAELATRTSQRQAPARPRRP*
Ga0137389_101269241	3300012096	Vadose Zone Soil	MRDPGRARDVSALTSRELERTRRELQAALALAMPGSPAQVPILAHMAAIDAELAGRGRSATLTPAQSAN
Ga0137383_101719462	3300012199	Vadose Zone Soil	VPDPGRPPDVTGLTPSELECTRRELAASLALARPDSPARVPILAHLAAIDTELAGRAGRAGRAGRDARQP*
Ga0137365_100352942	3300012201	Vadose Zone Soil	MPDPGRVHDVSALTAPELERTRRELQAALALARADSPAQAPILAHMAAIDAELASRADQQT*
Ga0137365_100568762	3300012201	Vadose Zone Soil	VPDPGRPPDVSTLTPAELQRTRRELAAALALARPGSPAHVPIRTHLAAIDAEMASRAGQQPQPPARP*
Ga0137365_100983051	3300012201	Vadose Zone Soil	VPDPGRPRDISALTSPELERTRRELHTALALSTPGSPAQVPILAHIAAIDTELAGWIGQQAIGTGIPAST*
Ga0137365_109017892	3300012201	Vadose Zone Soil	VADPARPHDVSTLTPRELERARRELQAALALARPGSPSRTPILARLAAIDAELVGRAERQNT*
Ga0137381_104495353	3300012207	Vadose Zone Soil	MPDPGRVHDVSALTAPELERTRRELQAALALARADSPAQAPILAHMAAIDAELASR
Ga0137379_106029422	3300012209	Vadose Zone Soil	MPDPGRVHDVSALTAPELERTRRELQAALALARADSPAQAPILAHIAAIDAELASRADQQT*
Ga0137378_101102862	3300012210	Vadose Zone Soil	VPDPGRPPGVSTLTPGELERTRRELAAALALSWPGSPALVPIRAHLAAIDAELSGRAGRDARQP*
Ga0137377_115953171	3300012211	Vadose Zone Soil	VPDPGRPPDVSTLTPAELQRTHRELAAALALARPGSPARVPIRTHLAAIDAELASR
Ga0137367_101406524	3300012353	Vadose Zone Soil	VPDPGRPPDVSTLTPAELRRTRRELAAALALARPGSPAHVPIRTHLAAIDAEMASRAGQQPQPPARP*
Ga0137371_102690083	3300012356	Vadose Zone Soil	VPDPGRPPDVSTLTPAELQRTRRELAAALALARPGSPARVPIRTHLAAIDAELASRAG
Ga0137385_110480331	3300012359	Vadose Zone Soil	KPHSTESSPSRPIAEGWPVADPARPHDVSTLTPRELERARRELQAALALARPGSPSRTPILARLAAIDAELVGRAERQNT*
Ga0137385_115584551	3300012359	Vadose Zone Soil	VPDPGRPRDVSALTSPELERTRRELRAALALARPGSPAQVPIRAHLTAIDAELAGRAGQQITGTGIPAST*
Ga0137373_106916073	3300012532	Vadose Zone Soil	VRWSSAGVSMLTPAELQRTRRELAAALALARPGSPAHVPIRTHLAAIDAEMASRAGQQPQPPARP*
Ga0137407_102648982	3300012930	Vadose Zone Soil	VPDPGRPPDVSTLTPAELQRTRRELAAALALARPGSPAYVPIRTHLAAIDAELASRAGQQPQPPARP*
Ga0163163_131234621	3300014325	Switchgrass Rhizosphere	VQPAGPGRPPDVSTLTPGELERTRRDLAASLALSRPGSPARLPIQAHLTAIDTELARRAAARPRHQPSR*
Ga0182039_113502141	3300016422	Soil	PPDVSALTPAELERTRRDLAISTTLIRPGSPAAIPIAAHMSAIDTELAHRADPGQASSR
Ga0187807_10835203	3300017926	Freshwater Sediment	VPDPGRPPEVSGLTSGELERARRELAASLALARPDSAARGPILAHLVAIDAELDQRRRIAGGQS
Ga0187807_12275751	3300017926	Freshwater Sediment	VPDPGRPPEVSTLTSGELERTQRELAASLALARPDSLARGPILTHLAAITAELNQRRTAGTDDR
Ga0187807_13420582	3300017926	Freshwater Sediment	VPDPGRVHDVSALTAPELERTRRELQAALALARPSSPAQAPILAHMAAIDAEL
Ga0187817_108564612	3300017955	Freshwater Sediment	VPDPGRPPEVRALTWGELERTRRELAASLALARPDSPARGPILTHLAAITAELNQRRTAGTDTR
Ga0210402_110853882	3300021478	Soil	VPDPGRPPDVSTLTPAELQRTRRELAAALALARPGSPAHLPIRTHLAAIDAELASRAGQQPQPPARP
Ga0207699_102567671	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	PSRTTARSWPMPDPGRAHDVSALTAPELERTRRELQAALALARPGSLAQTPILAHMAAIDAELASRADQQT
Ga0207699_107624842	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	EPMPDPSRSPDVTRLASGELERARRELAASLALARPGSPVRGPILAHMTAIDAELAGRDRQL
Ga0207684_101218835	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MPDLGRVHDVSALTAPELERTRRELHAALALARPGSPAQTPILAHMAAIDAELVSRAGQQ
Ga0207693_102052954	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MPDPGRAHDVSALTAPELERTRRELQAALALARPGSLAQTPILAYMAAIDAELASRADQQ
Ga0207693_107784313	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	ARIARPDPGRPPDVSTLTLGDLERTRRELAAALALARPGSASQVPIRTHLAAIDGELARRASQQQPRARP
Ga0207646_105689853	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	VPDPGRPPDVSTLTPAELQRTRRELAAALALARPGSPAHLPIRTHLAAIDAELASRAGQRPQPPARP
Ga0207700_102706122	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	MPDPGRAHDVSTLTTPELERTRRELRAALALARPGSPSQKPILAHMAAIDAELASRVGQQ
Ga0207700_104608382	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	MPDPGRVHDVSALTAPELKRTRRELQAALALARPGSPAQAPILAHMAAIDAELANRADQQ
Ga0207664_117134152	3300025929	Agricultural Soil	MPDPGRVHDVSALTAPELERTRRELQAALALARPGSPAQTPILAHMAAIDAELANRAIQQ
Ga0209648_106000841	3300026551	Grasslands Soil	PDPRPPDVAGLTSGDLERTRRELRTALALARPGSPALVPIRAHLAAIDAELAARDARQP
Ga0208488_10484421	3300027110	Forest Soil	PDPGRPPDVSGLTACELQRTRRDLATSLALLLPGSAACVPITTHISAIDSELARRDHDGHPGSPP
Ga0208565_11208282	3300027662	Peatlands Soil	MPDLARPHDVSMLTSPELEHARRELAAALALARPGSPAQVPIRAHLDAIDAELARRASRP
Ga0209590_102088681	3300027882	Vadose Zone Soil	MPDPGRPPDVSDRTSRELERTRRELAASLALARPDSPARVPILAHMIAIDAELAGRDARQ
Ga0209590_102147322	3300027882	Vadose Zone Soil	DTGRTPDVSDMTSRELERTRRELAASLALARPDSPARGPILTHLTAIDAELAWRDVRQP
Ga0209415_101701913	3300027905	Peatlands Soil	VPDPARLPDVSTLTSLQLQHNRRELAAALTLARPSSPIRAPIQAHLAAIDAELAARAGQQPRP
Ga0209415_102388672	3300027905	Peatlands Soil	MPDPARPRDVSMLTSRELERTRRELAAALALARPGSPAQVPIRAHLAAIDAELASRAGQQ
Ga0137415_104961972	3300028536	Vadose Zone Soil	MAALDLQCRRPDVRTLTPAELQRSRRELAAALALARPGSPAHVPIRAHLAAIDAELASRAGQQPQPPARP
Ga0311340_108458501	3300029943	Palsa	MPDPGHPPGVSELTSGELERTRRDLAVSLALVRPGSPALVPIQAHLTAIDGELAQRTGQQ
Ga0302181_100426315	3300030056	Palsa	MPDPGRPPRVSELTSGELERTRRDLAVSLALVRPGSPALVPIQAHLTAIDGELAQRTGQQ
Ga0310037_102983882	3300030494	Peatlands Soil	VTSPGRPPDVSGLTSGELQRTRRELATSLALLRLGSPAQVPILAHMTAIDAELANRAAPP
Ga0311370_105862282	3300030503	Palsa	RSPMPDPGRPPRVSELTSGELERTRRDLAVSLALVRPGSPALVPIQAHLTAIDGELAQRTGQQP
Ga0310038_102897722	3300030707	Peatlands Soil	VPDPARLPDVSTLTSLQLQHTRRELAAALTLARPSSPIRAPIQAHLAAIDAELAARAGQQPRP
Ga0310686_1026334567	3300031708	Soil	VPDPGRTHDVSALTPRELERARRELQAALALARAGSSAQVPILAHMAAIDAELASRPPETGIPAST
Ga0318497_104551981	3300031805	Soil	VSRPEPPSPGRPRDVSTLTSPQLEHARRELATALALARPGSPAQVPIRTHLDAIDAELARRASRQA
Ga0318510_101034884	3300032064	Soil	MPEPGRPPDVSALTPAELERTRRDLAISTTLIRPGSPAAIPIAAHMSAIDTELAHRA
Ga0318524_103761921	3300032067	Soil	MPEPGRPPDVSALTPAELERTRRDLAISTTLIRPGSPAAIPIAAHMSAIDTELAHRADPGQASSR
Ga0318524_106401632	3300032067	Soil	VNHRPAIPGPARPRDVSTLTSPELERARRELAAALALARPGSPAQVPIRTHLDAIDAELARRASRQA
Ga0311301_100942297	3300032160	Peatlands Soil	MPDPARPRDVSMLTSRELERTRRELAAALALARPGSPAQVPIRAHLAAIDAELASRAGHQ
Ga0311301_101728504	3300032160	Peatlands Soil	VTDPGRPPDVSGLTAGELDRTRRELAASLALLRPGSPAQVPILAHLTAIDHELAARTAPP
Ga0311301_101799134	3300032160	Peatlands Soil	VAYPGRPPDVSTLTSRELEHTRRELQAALALARPGSPVRAPILALLAAINAELAGRAGQQ
Ga0311301_104273794	3300032160	Peatlands Soil	VPDPGRPPDVSTLTPGQLERTRRELAAALALARPGSPAHVPIQAHLAAIDAELASRAGQQ
Ga0311301_108351552	3300032160	Peatlands Soil	VTAPGRSPDVSELTSGELERTRRDLAASLALLRPGSPAQVPILAHMTAIDAELAGRAAPP
Ga0311301_110673953	3300032160	Peatlands Soil	VTGPGRPPDVSGLTTGELERARRELAASLALTRPGSPARAPIQAHMAAIAAELAARAGGFPGSRPSDP
Ga0335085_111497021	3300032770	Soil	PVTGPGRAPDVSSLTPGELERTRRELAASLALLRPGSPARTPILAHINAIDHELAARATP
Ga0335085_119728152	3300032770	Soil	MPDPGRPPEVSTLTSGELHRTRRDLAAALALARAGSPAQVPIRAHLAAIDAELADRAAQR
Ga0335082_102063815	3300032782	Soil	VTGPGRAPDVSSLTPGELERTRRELAASLALLRPGSPARTPILAHINAIDHELAARATP
Ga0335079_100364974	3300032783	Soil	VTGPGRPPDVSGLTAGELHRARRELAAALALTRPGSPARAPIQAHMAAIDAELAVRGVSPPA
Ga0335079_110429131	3300032783	Soil	VTGPGRPPDVSGLTAGELDRARRELAAALALTRPGSPVRAPIQAHIAAIDAELAALAGGSPVSPPG
Ga0335078_102038425	3300032805	Soil	VPDPARLPDVSTLTSLQLQHTRRELAAALTLARPGSPIRAPIQAHLAAIDAELAARAGQQPRP
Ga0335080_107778521	3300032828	Soil	VNHHPGPPSPGRPRDVSTLTSPELERARRELAAALALARPGSPAQVPIHAHIDAIDGELARRASRHPGEKDAPAPAAPTSA
Ga0335081_101634721	3300032892	Soil	VTGPGRPPDVSGLTAGELDRARRELAAALALTRPGSPVRAPIQAHMAAIDAELAALAGGSPVSPPG
Ga0335081_105544932	3300032892	Soil	VPDPGRPPDVSALTPAELDRTRRELQAALALTRAGSPAQVPIRAHLAAIEAELARRVGQQ
Ga0335071_105968031	3300032897	Soil	TGPGRPPDVSRLTAGELDRTRRELAAALALTRPGSPARTPIRAHIAAIDAELAARAGGPPASPPG
Ga0335083_100694582	3300032954	Soil	VPGPGRPPDVSRLTAGELDRTRRELAAALALTRPGSPARTPIRAHIAAIDAELAARAGGPPASPPG
Ga0335076_103718251	3300032955	Soil	VTGPGRPPDVSGLTAGELVRARRELAAALALTCPGSPARVPIQAHMAAIDAELAARAGGPPVSPPG
Ga0335073_117848111	3300033134	Soil	VPDTGRPPDVSTMTPGELERARRDLAASLALARPGSPARLPIGTHLAAIDAELASRTSEREPPAPSPPDGGGHLP

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F080310

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences