Metagenome Family F080308

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F080308
Family Type	Metagenome
Number of Sequences	115
Average Sequence Length	46 residues
Representative Sequence	RANLLQTLVSFEGTLDARLEFHFGLFADNKCRLRDGLDNKALGL
Number of Associated Samples	100
Number of Associated Scaffolds	115

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	95.65 %
% of genes from short scaffolds (< 2000 bps)	91.30 %
Associated GOLD sequencing projects	95
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.22

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (99.130 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (21.739 % of family members)
Environment Ontology (ENVO)	Unclassified (31.304 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (52.174 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 16.67% β-sheet: 0.00% Coil/Unstructured: 83.33%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.22
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.22
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 115 Family Scaffolds
PF01243	Putative_PNPOx	7.83
PF01757	Acyl_transf_3	6.96
PF12071	DUF3551	3.48
PF03062	MBOAT	3.48
PF02518	HATPase_c	3.48
PF02371	Transposase_20	1.74
PF00753	Lactamase_B	1.74
PF16363	GDP_Man_Dehyd	0.87
PF03775	MinC_C	0.87
PF01041	DegT_DnrJ_EryC1	0.87
PF13628	DUF4142	0.87

COG ID	Name	Functional Category	% Frequency in 115 Family Scaffolds
COG3547	Transposase	Mobilome: prophages, transposons [X]	1.74
COG0399	dTDP-4-amino-4,6-dideoxygalactose transaminase	Cell wall/membrane/envelope biogenesis [M]	0.87
COG0436	Aspartate/methionine/tyrosine aminotransferase	Amino acid transport and metabolism [E]	0.87
COG0520	Selenocysteine lyase/Cysteine desulfurase	Amino acid transport and metabolism [E]	0.87
COG0626	Cystathionine beta-lyase/cystathionine gamma-synthase	Amino acid transport and metabolism [E]	0.87
COG0850	Septum site-determining protein MinC	Cell cycle control, cell division, chromosome partitioning [D]	0.87
COG1104	Cysteine desulfurase/Cysteine sulfinate desulfinase IscS or related enzyme, NifS family	Amino acid transport and metabolism [E]	0.87
COG2873	O-acetylhomoserine/O-acetylserine sulfhydrylase, pyridoxal phosphate-dependent	Amino acid transport and metabolism [E]	0.87

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	99.13 %
Unclassified	root	N/A	0.87 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	99.13 %
Unclassified	root	N/A	0.87 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	99.13 %
Unclassified	root	N/A	0.87 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	89.57 %
Unclassified	root	N/A	0.87 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	46.96 %
unclassified Proteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria	6.96 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.87 %
Unclassified	root	N/A	0.87 %

Name	Rank	Taxonomy	Distribution
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	37.39 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	6.96 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3.48 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.87 %
Unclassified	root	N/A	0.87 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	31.30 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	6.96 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	6.09 %
unclassified Hyphomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales	2.61 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.87 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	0.87 %
Unclassified	root	N/A	0.87 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	31.30 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	6.96 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	6.09 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	2.61 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.87 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	0.87 %
Unclassified	root	N/A	0.87 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000890\|JGI11643J12802_11489774	All Organisms → cellular organisms → Bacteria → Proteobacteria	653	Open in IMG/M
3300000893\|AP72_2010_repI_A001DRAFT_1049843	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	655	Open in IMG/M
3300001431\|F14TB_100149812	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	686	Open in IMG/M
3300004643\|Ga0062591_102490111	All Organisms → cellular organisms → Bacteria → Proteobacteria	544	Open in IMG/M
3300005093\|Ga0062594_101906838	All Organisms → cellular organisms → Bacteria	631	Open in IMG/M
3300005345\|Ga0070692_10916804	All Organisms → cellular organisms → Bacteria	607	Open in IMG/M
3300005367\|Ga0070667_101982739	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	548	Open in IMG/M
3300005456\|Ga0070678_100971093	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	780	Open in IMG/M
3300005548\|Ga0070665_102038193	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	579	Open in IMG/M
3300005614\|Ga0068856_100284452	All Organisms → cellular organisms → Bacteria → Proteobacteria	1670	Open in IMG/M
3300005615\|Ga0070702_100801561	All Organisms → cellular organisms → Bacteria → Proteobacteria	728	Open in IMG/M
3300005617\|Ga0068859_100311641	All Organisms → cellular organisms → Bacteria → Proteobacteria	1667	Open in IMG/M
3300005764\|Ga0066903_105982613	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	637	Open in IMG/M
3300005981\|Ga0081538_10071704	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1904	Open in IMG/M
3300006038\|Ga0075365_10728451	All Organisms → cellular organisms → Bacteria → Proteobacteria	700	Open in IMG/M
3300006175\|Ga0070712_100780179	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	819	Open in IMG/M
3300006178\|Ga0075367_10672447	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	658	Open in IMG/M
3300006237\|Ga0097621_100854317	All Organisms → cellular organisms → Bacteria	846	Open in IMG/M
3300006237\|Ga0097621_101025355	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	773	Open in IMG/M
3300006358\|Ga0068871_100578349	All Organisms → cellular organisms → Bacteria → Proteobacteria	1019	Open in IMG/M
3300006797\|Ga0066659_10434068	All Organisms → cellular organisms → Bacteria → Proteobacteria	1040	Open in IMG/M
3300006844\|Ga0075428_100655407	All Organisms → cellular organisms → Bacteria → Proteobacteria	1119	Open in IMG/M
3300006845\|Ga0075421_100020087	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	8395	Open in IMG/M
3300006847\|Ga0075431_100335604	All Organisms → cellular organisms → Bacteria → Proteobacteria	1522	Open in IMG/M
3300006852\|Ga0075433_11938776	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	505	Open in IMG/M
3300006853\|Ga0075420_100957778	All Organisms → cellular organisms → Bacteria → Proteobacteria	736	Open in IMG/M
3300006854\|Ga0075425_102307976	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	598	Open in IMG/M
3300006903\|Ga0075426_10905375	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	665	Open in IMG/M
3300006904\|Ga0075424_102783234	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	510	Open in IMG/M
3300009011\|Ga0105251_10234249	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	827	Open in IMG/M
3300009090\|Ga0099827_10569230	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	976	Open in IMG/M
3300009100\|Ga0075418_10017471	All Organisms → cellular organisms → Bacteria → Proteobacteria	7924	Open in IMG/M
3300009101\|Ga0105247_11475242	All Organisms → cellular organisms → Bacteria → Proteobacteria	553	Open in IMG/M
3300009101\|Ga0105247_11485759	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	552	Open in IMG/M
3300009147\|Ga0114129_10746402	All Organisms → cellular organisms → Bacteria → Proteobacteria	1253	Open in IMG/M
3300009147\|Ga0114129_12290798	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	648	Open in IMG/M
3300009147\|Ga0114129_13490808	All Organisms → cellular organisms → Bacteria → Proteobacteria	503	Open in IMG/M
3300009156\|Ga0111538_11820281	Not Available	766	Open in IMG/M
3300009176\|Ga0105242_10362328	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	1342	Open in IMG/M
3300009545\|Ga0105237_12725691	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	505	Open in IMG/M
3300009553\|Ga0105249_11020207	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	896	Open in IMG/M
3300010043\|Ga0126380_10003780	All Organisms → cellular organisms → Bacteria → Proteobacteria	6212	Open in IMG/M
3300010043\|Ga0126380_10996592	All Organisms → cellular organisms → Bacteria → Proteobacteria	705	Open in IMG/M
3300010046\|Ga0126384_10987241	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	766	Open in IMG/M
3300010047\|Ga0126382_12158189	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	535	Open in IMG/M
3300010397\|Ga0134124_12895786	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	524	Open in IMG/M
3300010400\|Ga0134122_10325125	All Organisms → cellular organisms → Bacteria → Proteobacteria	1330	Open in IMG/M
3300012198\|Ga0137364_10086223	All Organisms → cellular organisms → Bacteria → Proteobacteria	2182	Open in IMG/M
3300012212\|Ga0150985_106591734	All Organisms → cellular organisms → Bacteria → Proteobacteria	667	Open in IMG/M
3300012212\|Ga0150985_107754212	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	845	Open in IMG/M
3300012212\|Ga0150985_118268483	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	676	Open in IMG/M
3300012212\|Ga0150985_122898715	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	591	Open in IMG/M
3300012357\|Ga0137384_11198333	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	604	Open in IMG/M
3300012469\|Ga0150984_103787146	All Organisms → cellular organisms → Bacteria → Proteobacteria	515	Open in IMG/M
3300012904\|Ga0157282_10317301	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	555	Open in IMG/M
3300012910\|Ga0157308_10199651	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	674	Open in IMG/M
3300012916\|Ga0157310_10256132	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	665	Open in IMG/M
3300012924\|Ga0137413_10923714	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	679	Open in IMG/M
3300012927\|Ga0137416_10594858	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	963	Open in IMG/M
3300012957\|Ga0164303_10431836	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	823	Open in IMG/M
3300012961\|Ga0164302_10230532	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	1162	Open in IMG/M
3300012988\|Ga0164306_10814163	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	753	Open in IMG/M
3300012989\|Ga0164305_10116222	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1752	Open in IMG/M
3300012989\|Ga0164305_10456006	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	994	Open in IMG/M
3300013297\|Ga0157378_10366081	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	1412	Open in IMG/M
3300014745\|Ga0157377_10245385	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	1158	Open in IMG/M
3300014745\|Ga0157377_10944964	All Organisms → cellular organisms → Bacteria → Proteobacteria	648	Open in IMG/M
3300015371\|Ga0132258_12438723	All Organisms → cellular organisms → Bacteria	1309	Open in IMG/M
3300015371\|Ga0132258_13505594	All Organisms → cellular organisms → Bacteria → Proteobacteria	1075	Open in IMG/M
3300015372\|Ga0132256_102680293	All Organisms → cellular organisms → Bacteria → Proteobacteria	598	Open in IMG/M
3300015373\|Ga0132257_102858674	All Organisms → cellular organisms → Bacteria → Proteobacteria	629	Open in IMG/M
3300016387\|Ga0182040_10618801	All Organisms → cellular organisms → Bacteria → Proteobacteria	878	Open in IMG/M
3300016387\|Ga0182040_10786455	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	783	Open in IMG/M
3300016404\|Ga0182037_10304910	All Organisms → cellular organisms → Bacteria → Proteobacteria	1282	Open in IMG/M
3300018027\|Ga0184605_10007105	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	4149	Open in IMG/M
3300018054\|Ga0184621_10072220	All Organisms → cellular organisms → Bacteria → Proteobacteria	1188	Open in IMG/M
3300018072\|Ga0184635_10086716	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	1231	Open in IMG/M
3300018081\|Ga0184625_10047702	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	2138	Open in IMG/M
3300018469\|Ga0190270_10344037	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	1352	Open in IMG/M
3300018476\|Ga0190274_11373889	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	795	Open in IMG/M
3300019875\|Ga0193701_1028677	All Organisms → cellular organisms → Bacteria → Proteobacteria	1142	Open in IMG/M
3300020000\|Ga0193692_1008098	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	2635	Open in IMG/M
3300021082\|Ga0210380_10103307	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	1261	Open in IMG/M
3300021082\|Ga0210380_10310465	All Organisms → cellular organisms → Bacteria → Proteobacteria	718	Open in IMG/M
3300021968\|Ga0193698_1034261	All Organisms → cellular organisms → Bacteria → Proteobacteria	669	Open in IMG/M
3300025932\|Ga0207690_11277707	All Organisms → cellular organisms → Bacteria → Proteobacteria	613	Open in IMG/M
3300025937\|Ga0207669_11839956	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	517	Open in IMG/M
3300025945\|Ga0207679_10780525	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	870	Open in IMG/M
3300025945\|Ga0207679_11847943	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	551	Open in IMG/M
3300025986\|Ga0207658_11816665	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	556	Open in IMG/M
3300026121\|Ga0207683_10283418	All Organisms → cellular organisms → Bacteria	1514	Open in IMG/M
3300027633\|Ga0208988_1080483	All Organisms → cellular organisms → Bacteria	817	Open in IMG/M
3300027669\|Ga0208981_1022164	All Organisms → cellular organisms → Bacteria	1617	Open in IMG/M
3300027909\|Ga0209382_10177516	All Organisms → cellular organisms → Bacteria → Proteobacteria	2453	Open in IMG/M
3300028379\|Ga0268266_11409244	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	672	Open in IMG/M
3300028587\|Ga0247828_10953695	All Organisms → cellular organisms → Bacteria → Proteobacteria	557	Open in IMG/M
3300028708\|Ga0307295_10168570	All Organisms → cellular organisms → Bacteria → Proteobacteria	613	Open in IMG/M
3300028710\|Ga0307322_10134707	All Organisms → cellular organisms → Bacteria → Proteobacteria	651	Open in IMG/M
3300028719\|Ga0307301_10151032	All Organisms → cellular organisms → Bacteria	748	Open in IMG/M
3300028755\|Ga0307316_10025438	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	1911	Open in IMG/M
3300028790\|Ga0307283_10225285	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	544	Open in IMG/M
3300028796\|Ga0307287_10275849	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	636	Open in IMG/M
3300028796\|Ga0307287_10378692	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	533	Open in IMG/M
3300028802\|Ga0307503_10377644	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	734	Open in IMG/M
3300028814\|Ga0307302_10078083	All Organisms → cellular organisms → Bacteria → Proteobacteria	1565	Open in IMG/M
3300028824\|Ga0307310_10034341	All Organisms → cellular organisms → Bacteria → Proteobacteria	2052	Open in IMG/M
3300028875\|Ga0307289_10065355	All Organisms → cellular organisms → Bacteria	1465	Open in IMG/M
3300031455\|Ga0307505_10088676	All Organisms → cellular organisms → Bacteria → Proteobacteria	1382	Open in IMG/M
3300031858\|Ga0310892_11378644	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	506	Open in IMG/M
3300031859\|Ga0318527_10494345	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	522	Open in IMG/M
3300031910\|Ga0306923_10508872	All Organisms → cellular organisms → Bacteria	1361	Open in IMG/M
3300031912\|Ga0306921_10171268	All Organisms → cellular organisms → Bacteria	2543	Open in IMG/M
3300032012\|Ga0310902_10141137	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	1351	Open in IMG/M
3300032211\|Ga0310896_10272246	All Organisms → cellular organisms → Bacteria → Proteobacteria	865	Open in IMG/M
3300033551\|Ga0247830_10401902	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	1066	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	56.52%
Host-Associated	Host-Associated	43.48%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	51.30%
Plants	Host-Associated → Plants	43.48%
Aquatic	Environmental → Aquatic	5.22%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	51.30%
Rhizosphere	Host-Associated → Plants → Rhizosphere	28.70%
Rhizoplane	Host-Associated → Plants → Rhizoplane	9.57%
Roots	Host-Associated → Plants → Roots	5.22%
Sediment	Environmental → Aquatic → Sediment	3.48%
Freshwater	Environmental → Aquatic → Freshwater	1.74%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	45.22%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	20.00%
Soil	Host-Associated → Plants → Rhizosphere → Soil	8.70%
Loam	Environmental → Terrestrial → Soil → Loam	6.09%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	6.09%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.48%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	3.48%
Sediment	Environmental → Aquatic → Freshwater → Sediment	1.74%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.74%
Soil	Host-Associated → Plants → Rhizoplane → Soil	1.74%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	1.74%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	31.30%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	20.00%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	8.70%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	6.09%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	6.09%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	4.35%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.48%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	2.61%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.61%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	2.61%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	1.74%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.74%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.74%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.74%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	1.74%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	1.74%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.87%
Unclassified	Host-Associated → Plants → Roots → Rhizosphere → Unclassified	0.87%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	21.74%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	12.17%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	4.35%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	4.35%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	4.35%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	3.48%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	3.48%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	3.48%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	3.48%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	3.48%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.61%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	2.61%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	2.61%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.61%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	2.61%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	1.74%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.74%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.74%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.74%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	1.74%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	1.74%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	1.74%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.87%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.87%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.87%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.87%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.87%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.87%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Unclassified → Tabebuia Heterophylla Rhizosphere	0.87%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.87%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.87%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.87%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.87%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.87%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000890	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000893	Forest soil microbial communities from Amazon forest - Pasture72 2010 replicate I A001	Environmental	Open in IMG/M
3300001431	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemly	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005345	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG	Environmental	Open in IMG/M
3300005367	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG	Host-Associated	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300005615	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG	Environmental	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005981	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1	Host-Associated	Open in IMG/M
3300006038	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5	Host-Associated	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006178	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2	Host-Associated	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006358	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2	Host-Associated	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006853	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300009011	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG	Host-Associated	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012904	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S029-104C-1	Environmental	Open in IMG/M
3300012910	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S198-509B-2	Environmental	Open in IMG/M
3300012916	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S213-509R-2	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300014745	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300018027	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_coex	Environmental	Open in IMG/M
3300018054	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_b1	Environmental	Open in IMG/M
3300018072	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b2	Environmental	Open in IMG/M
3300018081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300019875	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3s2	Environmental	Open in IMG/M
3300020000	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3a1	Environmental	Open in IMG/M
3300021082	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5_coex redo	Environmental	Open in IMG/M
3300021968	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3c1	Environmental	Open in IMG/M
3300025932	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025937	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025986	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026121	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027633	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_M1 (SPAdes)	Environmental	Open in IMG/M
3300027669	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM1_M1 (SPAdes)	Environmental	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028379	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300028587	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day3	Environmental	Open in IMG/M
3300028708	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_152	Environmental	Open in IMG/M
3300028710	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_380	Environmental	Open in IMG/M
3300028719	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_182	Environmental	Open in IMG/M
3300028755	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_356	Environmental	Open in IMG/M
3300028790	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_122	Environmental	Open in IMG/M
3300028796	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_141	Environmental	Open in IMG/M
3300028802	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 17_S	Environmental	Open in IMG/M
3300028814	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_183	Environmental	Open in IMG/M
3300028824	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_197	Environmental	Open in IMG/M
3300028875	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_143	Environmental	Open in IMG/M
3300031455	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 23_S	Environmental	Open in IMG/M
3300031858	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D2	Environmental	Open in IMG/M
3300031859	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f25	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300032012	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D3	Environmental	Open in IMG/M
3300032211	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D1	Environmental	Open in IMG/M
3300033551	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day5	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI11643J12802_114897742	3300000890	Soil	APARLPRANLLQTLVSFDGALDARIEFHFGLFADNTCRLRDGLDNKALGL*
AP72_2010_repI_A001DRAFT_10498431	3300000893	Forest Soil	RLTRANLFQTLMSFDGTVDARIEFRFGLFADNTCRLRDGIDNKALGL*
F14TB_1001498121	3300001431	Soil	NLFQTLMSFDRTVDARIEFRFGLFADNSCRLRDGLDNKALGL*
Ga0062591_1024901111	3300004643	Soil	PARLTRANLLQTLVSFDGALDARLEFHFGLFADNKCRLRDGQDNKALGL*
Ga0062594_1019068381	3300005093	Soil	QTLVSFEGALDARLEFHFGLFADNKCRLRDGQDNKALGF*
Ga0070692_109168042	3300005345	Corn, Switchgrass And Miscanthus Rhizosphere	PVRLTRANLLQTLVSFEGALDARLEFHFGLFADNKCRLRDGQDNKALGF*
Ga0070667_1019827392	3300005367	Switchgrass Rhizosphere	IRANLMQTLISFDRTLDARLEFRFGLFADNTCRLRDGLDNKALALQ*
Ga0070678_1009710931	3300005456	Miscanthus Rhizosphere	PARLTRANLFQTLVSFDGELDARLEFRFGLFADNKCRIRDGQDNKALGL*
Ga0070665_1020381932	3300005548	Switchgrass Rhizosphere	QTLVSFEGTLDARLEFHFGLFADNKCRLRDGLDNKALGL*
Ga0068856_1002844523	3300005614	Corn Rhizosphere	FDGALDARLEFHFGLFADNTCRLRDGLDNKALGL*
Ga0070702_1008015611	3300005615	Corn, Switchgrass And Miscanthus Rhizosphere	MMVALALFPCLAQTLVSFDGTLDARLEFRFGLFAENKCRLRDGRDNKALGL*
Ga0068859_1003116411	3300005617	Switchgrass Rhizosphere	LTRANLLQTLVSFDGALDARIEFHFGLFADNTCRLRDGLDNKALGL*
Ga0066903_1059826132	3300005764	Tropical Forest Soil	RLARANLFQTLLSFDRAVDARIEFRFGLFADNTCRLRDGLDNKALGL*
Ga0081538_100717043	3300005981	Tabebuia Heterophylla Rhizosphere	LVSFDRTLDARLEFRFGLFADNACRLRDGLDNKALGL*
Ga0075365_107284511	3300006038	Populus Endosphere	LVSFEGALDARLEFHFGLFADNKCRLRDGQDNKALGL*
Ga0070712_1007801792	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	APARLTRANLLQTLVSFDGALDARLEFHFGLFADNTCRLRDGLDNKALGL*
Ga0075367_106724472	3300006178	Populus Endosphere	ANLLQTLVSFEGALDARLEFHFGLFADNKCRLRDGQDNKALGL*
Ga0097621_1008543171	3300006237	Miscanthus Rhizosphere	LTRANLLQTLVSFEGALDARLEFHFGLFADNKCRLRDGQDNKALGF*
Ga0097621_1010253552	3300006237	Miscanthus Rhizosphere	RANLLQTLVSFEGTLDARLEFHFGLFADNKCRLRDGLDNKALGL*
Ga0068871_1005783492	3300006358	Miscanthus Rhizosphere	SPARLTRANLLQTLVSFEGALDARLEFHFGLFADNKCRLRDGQDNKALGL*
Ga0066659_104340682	3300006797	Soil	ARANLFQTLMSFDRMVDARIEFSFGLFADNRCRLRDGLDNKALGL*
Ga0075428_1006554071	3300006844	Populus Rhizosphere	RANLFQTLMSFDRTIDARIEFRFGLFADNSCRLRDGLDNKALGL*
Ga0075421_1000200876	3300006845	Populus Rhizosphere	LFQTLMSFDRTIDARIEFRFGLFADNSCRLRDGLDNKALGL*
Ga0075431_1003356042	3300006847	Populus Rhizosphere	NRAPVRLTRANLFQTLMSFDGTVDARIEFHFGLFSDNKCRLRDGLDNKALGL*
Ga0075433_119387762	3300006852	Populus Rhizosphere	LARANLFQTLLSFDRAVDARLEFRFGLFADNTCRLRDGLDNKALGL*
Ga0075420_1009577781	3300006853	Populus Rhizosphere	QTLMSFDGTVDARIEFHFGLFSDNKCRLRDGLDNKALGL*
Ga0075425_1023079762	3300006854	Populus Rhizosphere	AAPVRLIRANLMQTLISFDRTLDARLEFRFGLFADNTCRLRDGLDNKALALQ*
Ga0075426_109053752	3300006903	Populus Rhizosphere	LIRANLMQTLISFDRTLDARLEFRFGLFADNTCRLRDGLDNKALALQ*
Ga0075424_1027832341	3300006904	Populus Rhizosphere	TRANLLQTLVSFDGALDARIEFHFGLFADNTCRLRDGLDNKALGL*
Ga0105251_102342492	3300009011	Switchgrass Rhizosphere	APARLTRANLLQTLVSFEGALDARLEFHFGLFADNKCRLRDGLDNKALGL*
Ga0099827_105692301	3300009090	Vadose Zone Soil	NLFQTLLSFDRAVDARLEFRFGLFADNTCRIRDGLDNKALGL*
Ga0075418_100174711	3300009100	Populus Rhizosphere	RLSRANLFQTLMSFDRTIDARIEFRFGLFADNSCRLRDGLDNKALGL*
Ga0105247_114752422	3300009101	Switchgrass Rhizosphere	LIRANLFQTLVSFDGELDARLEFRFGLFADNKCRIRDGQDNKALGL*
Ga0105247_114857592	3300009101	Switchgrass Rhizosphere	ARLTRANLLQTLVSFEGTLDARLEFHFGLFADNKCRLRDGLDNKALGL*
Ga0114129_107464021	3300009147	Populus Rhizosphere	SRANLFQTLMSFDRTIDARIEFRFGLFADNSCRLRDGLDNKALGL*
Ga0114129_122907981	3300009147	Populus Rhizosphere	MQTLMSFDRTVDAHIEFRFGLFADNSCRLQDGLDNKALGL*
Ga0114129_134908082	3300009147	Populus Rhizosphere	VVNGAPVRLTRVNLFQTLISFVGSLDARVEFRFGLFADNKCRLMDWSDNRKLGL*
Ga0111538_118202811	3300009156	Populus Rhizosphere	LMQTLLSFDGVLDARIEFQFGLFGDNNCRKRDGSDNKAIGVGHPTTGIH*
Ga0105242_103623281	3300009176	Miscanthus Rhizosphere	INGSPVRLTRANLLQTLVSFEGALDARLEFHFGLFADNKCRLRDGQDNKALGF*
Ga0105237_127256912	3300009545	Corn Rhizosphere	VRLIRANLMQTLISFDRTLDARLEFRFGLFADNTCRLRDGLDNKALALQ*
Ga0105249_110202072	3300009553	Switchgrass Rhizosphere	DRTLDARLEFRFGLFADNTCRLRDGLDNKALALQ*
Ga0126380_100037807	3300010043	Tropical Forest Soil	FDRAVDARIEFRFGLFADNTCRLRDGLDNKALGL*
Ga0126380_109965922	3300010043	Tropical Forest Soil	MSFDRAVDARIEFQFGLFANNACRRRDGLDNKALGL*
Ga0126384_109872412	3300010046	Tropical Forest Soil	SFDGTVDARIEFRFGLFADNTCRLRDGLDNKALGL*
Ga0126382_121581891	3300010047	Tropical Forest Soil	ARANLFQTLLSFDRAVDARIEFRFGLFADNTCRLRDGLDNKALGL*
Ga0134124_128957862	3300010397	Terrestrial Soil	VNAAPVRLIRANLMQTLISFDRTLDARLEFRFGLFADNTCRLRDGLDNKALALQ*
Ga0134122_103251253	3300010400	Terrestrial Soil	VNSSPARLTRANLLHTLVSFEGTLDARLEFHFGLFADNKCRLRDGQDNKALGL*
Ga0137364_100862231	3300012198	Vadose Zone Soil	LMSFDRMVDARIEFRFGLFADNSCRLRDGLDNKALGL*
Ga0150985_1065917342	3300012212	Avena Fatua Rhizosphere	VVNSSPARLTRANLLQTLVSFEGELDARLEFHFGLFADNKCRLRDGQDNKALGL*
Ga0150985_1077542123	3300012212	Avena Fatua Rhizosphere	VVNSSPARLTRANLLQTLVSFEGELDARLEFHFGLFADNKCRIRDGQDNKALGF*
Ga0150985_1182684831	3300012212	Avena Fatua Rhizosphere	VNSSPARLTRANLLQTLVSFEGALDARLEFHFGLFADNKCRLRDGQDNKALGL*
Ga0150985_1228987152	3300012212	Avena Fatua Rhizosphere	SFEGALDARLEFHFGLFADNKCRLRDGQDNKALGF*
Ga0137384_111983332	3300012357	Vadose Zone Soil	FDRTVDARIEFRFGLFADNSCRRQDGLDNKALGL*
Ga0150984_1037871461	3300012469	Avena Fatua Rhizosphere	RANLLQTLVSFEGELDARLEFHFGLFADNKCRLRDGQDNKALGF*
Ga0157282_103173012	3300012904	Soil	SPARLTRANLLQTLVSFDGALDARLEFHFGLFADNKCRLRDGLDNKALGL*
Ga0157308_101996511	3300012910	Soil	RANLLQTLVSFEGALDARLEFHFGLFADNKCRLRDGQDNKALGL*
Ga0157310_102561322	3300012916	Soil	VNAAPARLTRANLLQTLVSFDGALDARIEFHFGLFADNTCRLRDGRDNKALGL*
Ga0137413_109237142	3300012924	Vadose Zone Soil	FQTLLSFDRTVDARIEFHFGLFADNKCRIRDGLDNKSLGLPISQ*
Ga0137416_105948582	3300012927	Vadose Zone Soil	QTLLSFDRAVDARLEFRFGLFADNTCRIRDGLDNKALGL*
Ga0164303_104318362	3300012957	Soil	ANLMQTLVSFEGTLDARLEFHFGLFADNKCRLRDGLDNKALGL*
Ga0164302_102305322	3300012961	Soil	SFEGTLDARLEFHFGLFADNKCRLRDGLDNKALGL*
Ga0164306_108141631	3300012988	Soil	RLTRANLLQTLVSFEGVLDARLEFRFGLFADNKCRLRDGQDNKTLGF*
Ga0164305_101162223	3300012989	Soil	VSFDGALDARLEFHFGLFADNKCRLRDGQDNKALGF*
Ga0164305_104560061	3300012989	Soil	SSPARLTRANLLQTLVSFEGVLDARLEFRFGLFADNKCRLRDGQDNKTLGF*
Ga0157378_103660811	3300013297	Miscanthus Rhizosphere	SSPARLTRANLLQTLVSFEGALDARLEFHFGLFADNKCRLRDGLDNKALGL*
Ga0157377_102453851	3300014745	Miscanthus Rhizosphere	NLLQTLVSFEGTLDARLEFHFGLFADNKCRLRDGLDNKALGL*
Ga0157377_109449642	3300014745	Miscanthus Rhizosphere	SFDGALDARLEFRFGLFADNKCRIRDGQDNKALGL*
Ga0132258_124387231	3300015371	Arabidopsis Rhizosphere	VVNSSPARLTRAKLLQTLVSFEGALDARLEFRFGLFADNKCRLRDGQDNKTLGF*
Ga0132258_135055942	3300015371	Arabidopsis Rhizosphere	VTNGAAVQLRRANLIQTRMSFRGTVDADIEFRFGLFADNKCRLRDGADNKALGL*
Ga0132256_1026802932	3300015372	Arabidopsis Rhizosphere	VNSSPARLTRANLLQTLVSFDGALDARLEFHFGLFADNKCRLRDGQDNKALGL*
Ga0132257_1028586742	3300015373	Arabidopsis Rhizosphere	NSSPARLTRANLLQTLVSFEGALDARLEFHFGLFADNKCRLRDGQDNKALGL*
Ga0182040_106188011	3300016387	Soil	NGAPVRLTRVNLVQTLLSFDGKIDARIEFRFGLFADNMCRLRDGLDNRALGL
Ga0182040_107864552	3300016387	Soil	RANLFQTLMSFDRAVDARIEFHFELFTNNACRLRDGLDNKALGL
Ga0182037_103049104	3300016404	Soil	VVVNGAAARLTRANLFQTLMSFDRAVDARIEFRFGLFGDNACRVRDGLDNKALGL
Ga0184605_100071058	3300018027	Groundwater Sediment	QTLLSFDGTVDARIEFHFGLFADNKCRIRDGLDNKSLGLPISQ
Ga0184621_100722201	3300018054	Groundwater Sediment	ARLTRANLLQTLVSFEGELDARLEFHFGLFADNKCRLRDGQDNKSLGL
Ga0184635_100867161	3300018072	Groundwater Sediment	DGTVDARIEFNFGLFAYNKCRIRDGLDNKSLGLPNTQ
Ga0184625_100477021	3300018081	Groundwater Sediment	AARLSRANLFQTLLSFDGTVDARIEFHFGLFADNKCRIRDGLDNKSLGLPNTQ
Ga0190270_103440371	3300018469	Soil	NNSPARLTRANLLQTLVSFEGALHARLEFQFGLFADNKCRLRDGQDYKALGF
Ga0190274_113738892	3300018476	Soil	LTRANLLQTLLSFEGMLDARLEFHFGLFADNKCRLRDGLDNKALGL
Ga0193701_10286771	3300019875	Soil	LFQTLMSFDRAVDARIEFQFGLFANNACRRRDGLDNKALGL
Ga0193692_10080984	3300020000	Soil	NLFQTLLSFDGKVDARIEFHFGLFADNKCRIRDGLDNKILGLPISQ
Ga0210380_101033072	3300021082	Groundwater Sediment	VSFDGTLDARLEFHFGLFADNKCCLRDGLDNKALGL
Ga0210380_103104651	3300021082	Groundwater Sediment	NGAAARLSRANLFQTLMSFDRAVDARIEFQFGLFANNACRRRDGLDNKALGL
Ga0193698_10342612	3300021968	Soil	LSRANLFQTLMSFDRAVDARIEFQFGLFANNACRRRDGLDNKALGL
Ga0207690_112777071	3300025932	Corn Rhizosphere	QTLVSFDGALDARLEFHFGLFADNKCRLRDGQDNKALGL
Ga0207669_118399562	3300025937	Miscanthus Rhizosphere	SFDGTLDARLEFHFGLFADNECRLRDGLDNKALGL
Ga0207679_107805252	3300025945	Corn Rhizosphere	RLTRANLLQTLVSFEGALDARLEFHFGLFADNKCRLRDGLDNKALGL
Ga0207679_118479432	3300025945	Corn Rhizosphere	PARLTRANLLQTLVSFDGALDARIEFHFGLFADNTCRLRDGLDNKALGL
Ga0207658_118166651	3300025986	Switchgrass Rhizosphere	RLIRANLMQTLISFDRTLDARLEFRFGLFADNTCRLRDGLDNKALALQ
Ga0207683_102834181	3300026121	Miscanthus Rhizosphere	LTRANLLQTLVSFEGVLDARLEFRFGLFADNKCRLRDGQDNKTLGF
Ga0208988_10804832	3300027633	Forest Soil	ANLMQTLMSFSGAIDARIELHFGLFADNSCRLRDARDNQALGLTSPH
Ga0208981_10221641	3300027669	Forest Soil	RLRRANLTQTLMSFSGAIDARIELHFGLFADNSCRLRDARDNQALGLTSPH
Ga0209382_101775161	3300027909	Populus Rhizosphere	FQTLMSFDRTIDARIEFRFGLFADNSCRLRDGLDNKALGL
Ga0268266_114092442	3300028379	Switchgrass Rhizosphere	VVNGAPARLTRANLLQTLVSFDGTLDARLEFHFGLFADNKCRLRDGLDNKALGL
Ga0247828_109536951	3300028587	Soil	SPARLTRANLLQTLVSFDGALDARLEFRFGLFADNKCRIRDGQDNKALGL
Ga0307295_101685702	3300028708	Soil	NLLQTLVSFDGALDARLEFQFGLFADNTCRRRDGLDNKSLGL
Ga0307322_101347073	3300028710	Soil	VIVNAAAARLSRANLFQTLMSFDRAVDARIEFQFGLFANNACRRRDGLDNKALGL
Ga0307301_101510322	3300028719	Soil	LMQTLMSFSGAIDARIELHFGLFADNSCRLRDARDNQTLGLTSPH
Ga0307316_100254381	3300028755	Soil	QTLLSFDGTVDARIEFLFGLFADNKCRIRDGLDNKSLGLPNTQ
Ga0307283_102252851	3300028790	Soil	NGAPARLTRANLLQTLVSFAGALDARLEFHFGLFADNKCRLRDGLDNKALGL
Ga0307287_102758491	3300028796	Soil	GTVDARIEFHFGLFADNKCRIRDGLDNKSLGLPNTQ
Ga0307287_103786921	3300028796	Soil	LLSFEGTVDARIEFHFGLFADNKCRIRDGLDNKSLGLPISQ
Ga0307503_103776441	3300028802	Soil	TRANFMQTLVSFEGTLDARLEFHFGLFADNKCRLRDGLDNKALGL
Ga0307302_100780831	3300028814	Soil	GNAAAARLSRANLFQTLMSFDRAVDARIEFQFGLFANNACRRRDGLDNKALGL
Ga0307310_100343414	3300028824	Soil	RANLFQTLMSFDRAVDARIEFQFGLFANNACRRRDGLDNKALGL
Ga0307289_100653551	3300028875	Soil	APVRLRRANLMQTLMSFSGAIDARIELHFGLFADNSCRLRDARDNQTLGLTSPH
Ga0307505_100886761	3300031455	Soil	TRANLLQTLVSFEGALDARLEFHFGLFADNKCRLRDGQDNKALGL
Ga0310892_113786441	3300031858	Soil	AAPARLTRANLLQTLVSFDGALDARLEFHFGLFADNTCRLRDGLDNKALGL
Ga0318527_104943451	3300031859	Soil	RANLFQTLMSFDGTVDARIEFRFGLFADNTCRLRDGIDNKALGL
Ga0306923_105088721	3300031910	Soil	TRVNLMQTLLSFDGKVDTRIEFRFGLFADNTCRLRDGLDNRALGL
Ga0306921_101712684	3300031912	Soil	VNLMQTLLSFDGKIDARIEFRFGLFADNSCRLRDGLDNRALGL
Ga0310902_101411371	3300032012	Soil	TRANLLQTLVSFEGTLDARLEFHFGLFADNKCRLRDGLDNKALGL
Ga0310896_102722462	3300032211	Soil	QTLVSFEGALDARLEFHFGLFADNKCRLRDGQDNKALGF
Ga0247830_104019021	3300033551	Soil	NGAPARLTRANLLQTLVSFEGALDARLEFHFGLFADNKCRLRDGLDNKALGL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F080308

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences