Metagenome / Metatranscriptome Family F080298

Basic Information
Family ID	F080298
Family Type	Metagenome / Metatranscriptome
Number of Sequences	115
Average Sequence Length	78 residues
Representative Sequence	MTVAIPAVTFPGGGTGQDMTGHRPASGLLVIMAGPVAPAPGPGSQPVPPRWSRDRSGLWLRNAAAGLCVLAAAAAAVSFTAQY
Number of Associated Samples	99
Number of Associated Scaffolds	115

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	78.30 %
% of genes near scaffold ends (potentially truncated)	90.43 %
% of genes from short scaffolds (< 2000 bps)	87.83 %
Associated GOLD sequencing projects	96
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.33

Most Common Taxonomy
Group	Unclassified (80.870 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil (12.174 % of family members)
Environment Ontology (ENVO)	Unclassified (29.565 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (39.130 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 25.23% β-sheet: 0.00% Coil/Unstructured: 74.77%
Feature Viewer

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Pfam ID	Name	% Frequency in 115 Family Scaffolds
PF00392	GntR	8.70
PF07702	UTRA	2.61
PF07366	SnoaL	0.87
PF13699	DUF4157	0.87
PF13443	HTH_26	0.87

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	80.87 %
All Organisms	root	All Organisms	19.13 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	80.87 %
cellular organisms	root	All Organisms → cellular organisms	19.13 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	80.87 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	19.13 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	80.87 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	17.39 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	80.87 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	17.39 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	80.87 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	15.65 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	80.87 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	11.30 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	3.48 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	80.87 %
unclassified Streptosporangiales	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → unclassified Streptosporangiales	5.22 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	3.48 %
Thermomonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae	1.74 %
Treboniaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	80.87 %
Streptosporangiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → unclassified Streptosporangiales → Streptosporangiales bacterium	5.22 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	3.48 %
Actinomadura	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura	1.74 %
Trebonia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	80.87 %
Streptosporangiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → unclassified Streptosporangiales → Streptosporangiales bacterium	5.22 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	3.48 %
Actinomadura citrea	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura citrea	0.87 %
Trebonia kvetii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	0.87 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000364\|INPhiseqgaiiFebDRAFT_100766095	Not Available	704	Open in IMG/M
3300001356\|JGI12269J14319_10024684	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	4163	Open in IMG/M
3300002914\|JGI25617J43924_10249443	All Organisms → cellular organisms → Bacteria	600	Open in IMG/M
3300004092\|Ga0062389_101348761	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	898	Open in IMG/M
3300005329\|Ga0070683_101742346	Not Available	599	Open in IMG/M
3300005467\|Ga0070706_101147733	Not Available	715	Open in IMG/M
3300005468\|Ga0070707_101282138	Not Available	699	Open in IMG/M
3300005563\|Ga0068855_101968903	Not Available	591	Open in IMG/M
3300005840\|Ga0068870_11159722	Not Available	558	Open in IMG/M
3300005921\|Ga0070766_10549407	Not Available	772	Open in IMG/M
3300006046\|Ga0066652_102049720	Not Available	508	Open in IMG/M
3300006052\|Ga0075029_100548271	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	768	Open in IMG/M
3300006175\|Ga0070712_101406336	Not Available	609	Open in IMG/M
3300006176\|Ga0070765_102166284	Not Available	519	Open in IMG/M
3300006575\|Ga0074053_11768195	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	775	Open in IMG/M
3300006904\|Ga0075424_102802503	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	508	Open in IMG/M
3300009101\|Ga0105247_11486630	Not Available	552	Open in IMG/M
3300009177\|Ga0105248_11412704	Not Available	787	Open in IMG/M
3300009521\|Ga0116222_1163393	Not Available	959	Open in IMG/M
3300009524\|Ga0116225_1509765	Not Available	534	Open in IMG/M
3300009698\|Ga0116216_10225608	Not Available	1146	Open in IMG/M
3300009792\|Ga0126374_10848380	Not Available	703	Open in IMG/M
3300009824\|Ga0116219_10393356	Not Available	773	Open in IMG/M
3300010371\|Ga0134125_12792954	Not Available	531	Open in IMG/M
3300010379\|Ga0136449_101482076	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → unclassified Streptosporangiales → Streptosporangiales bacterium	1040	Open in IMG/M
3300010379\|Ga0136449_103296507	Not Available	621	Open in IMG/M
3300010396\|Ga0134126_10441323	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	1507	Open in IMG/M
3300010876\|Ga0126361_11204890	Not Available	731	Open in IMG/M
3300011119\|Ga0105246_11936836	Not Available	567	Open in IMG/M
3300011269\|Ga0137392_11067926	Not Available	662	Open in IMG/M
3300012201\|Ga0137365_10130841	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	1886	Open in IMG/M
3300012202\|Ga0137363_11125626	Not Available	668	Open in IMG/M
3300012206\|Ga0137380_10771202	Not Available	831	Open in IMG/M
3300012207\|Ga0137381_10678778	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → unclassified Streptosporangiales → Streptosporangiales bacterium	896	Open in IMG/M
3300012208\|Ga0137376_11642008	Not Available	534	Open in IMG/M
3300012357\|Ga0137384_11420900	Not Available	542	Open in IMG/M
3300012359\|Ga0137385_11103791	Not Available	653	Open in IMG/M
3300012361\|Ga0137360_10912899	Not Available	757	Open in IMG/M
3300012944\|Ga0137410_12086639	Not Available	505	Open in IMG/M
3300013307\|Ga0157372_10981761	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → unclassified Streptosporangiales → Streptosporangiales bacterium	979	Open in IMG/M
3300014325\|Ga0163163_13095461	Not Available	519	Open in IMG/M
3300014745\|Ga0157377_11290307	Not Available	570	Open in IMG/M
3300014968\|Ga0157379_11086943	Not Available	766	Open in IMG/M
3300014969\|Ga0157376_12251073	Not Available	584	Open in IMG/M
3300015374\|Ga0132255_104872672	Not Available	568	Open in IMG/M
3300016294\|Ga0182041_10877209	Not Available	805	Open in IMG/M
3300016294\|Ga0182041_11237399	Not Available	682	Open in IMG/M
3300016341\|Ga0182035_11472075	Not Available	612	Open in IMG/M
3300016404\|Ga0182037_11943114	Not Available	527	Open in IMG/M
3300016422\|Ga0182039_10607641	Not Available	956	Open in IMG/M
3300017823\|Ga0187818_10563518	Not Available	514	Open in IMG/M
3300017926\|Ga0187807_1216665	Not Available	622	Open in IMG/M
3300017926\|Ga0187807_1308873	Not Available	526	Open in IMG/M
3300017932\|Ga0187814_10379702	Not Available	548	Open in IMG/M
3300017933\|Ga0187801_10090999	Not Available	1149	Open in IMG/M
3300017937\|Ga0187809_10169156	Not Available	764	Open in IMG/M
3300017942\|Ga0187808_10417375	Not Available	615	Open in IMG/M
3300017943\|Ga0187819_10704997	Not Available	569	Open in IMG/M
3300017955\|Ga0187817_10909305	Not Available	563	Open in IMG/M
3300017959\|Ga0187779_10572927	Not Available	753	Open in IMG/M
3300017972\|Ga0187781_10321461	Not Available	1099	Open in IMG/M
3300017974\|Ga0187777_10983214	Not Available	610	Open in IMG/M
3300017975\|Ga0187782_10196223	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura citrea	1510	Open in IMG/M
3300017995\|Ga0187816_10514984	Not Available	539	Open in IMG/M
3300017999\|Ga0187767_10145042	Not Available	705	Open in IMG/M
3300018001\|Ga0187815_10344489	Not Available	633	Open in IMG/M
3300018086\|Ga0187769_10965821	Not Available	645	Open in IMG/M
3300018086\|Ga0187769_11006011	Not Available	631	Open in IMG/M
3300019787\|Ga0182031_1288898	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1972	Open in IMG/M
3300021407\|Ga0210383_10894797	Not Available	757	Open in IMG/M
3300021474\|Ga0210390_10091721	All Organisms → cellular organisms → Bacteria	2530	Open in IMG/M
3300021474\|Ga0210390_11601186	Not Available	513	Open in IMG/M
3300025898\|Ga0207692_10164100	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → unclassified Streptosporangiales → Streptosporangiales bacterium	1282	Open in IMG/M
3300025910\|Ga0207684_11022345	Not Available	691	Open in IMG/M
3300030053\|Ga0302177_10293441	Not Available	869	Open in IMG/M
3300030058\|Ga0302179_10563179	Not Available	500	Open in IMG/M
3300030490\|Ga0302184_10347268	Not Available	586	Open in IMG/M
3300030707\|Ga0310038_10463994	Not Available	540	Open in IMG/M
3300030707\|Ga0310038_10514395	Not Available	505	Open in IMG/M
3300031236\|Ga0302324_100109652	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4644	Open in IMG/M
3300031236\|Ga0302324_103345403	Not Available	524	Open in IMG/M
3300031525\|Ga0302326_12584553	Not Available	634	Open in IMG/M
3300031544\|Ga0318534_10263232	Not Available	994	Open in IMG/M
3300031680\|Ga0318574_10354408	Not Available	856	Open in IMG/M
3300031681\|Ga0318572_10161233	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura	1299	Open in IMG/M
3300031708\|Ga0310686_114741806	Not Available	984	Open in IMG/M
3300031708\|Ga0310686_117850673	Not Available	590	Open in IMG/M
3300031747\|Ga0318502_10669322	Not Available	627	Open in IMG/M
3300031779\|Ga0318566_10583678	Not Available	545	Open in IMG/M
3300031819\|Ga0318568_10285446	Not Available	1024	Open in IMG/M
3300031896\|Ga0318551_10221862	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → unclassified Streptosporangiales → Streptosporangiales bacterium	1051	Open in IMG/M
3300032055\|Ga0318575_10472800	Not Available	636	Open in IMG/M
3300032160\|Ga0311301_10374435	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	2203	Open in IMG/M
3300032160\|Ga0311301_10826291	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1266	Open in IMG/M
3300032160\|Ga0311301_11342921	Not Available	898	Open in IMG/M
3300032770\|Ga0335085_11187679	Not Available	812	Open in IMG/M
3300032770\|Ga0335085_12025872	Not Available	583	Open in IMG/M
3300032782\|Ga0335082_10712996	Not Available	865	Open in IMG/M
3300032782\|Ga0335082_10748614	Not Available	839	Open in IMG/M
3300032783\|Ga0335079_10692195	Not Available	1066	Open in IMG/M
3300032828\|Ga0335080_11009684	Not Available	847	Open in IMG/M
3300032892\|Ga0335081_10089480	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	4625	Open in IMG/M
3300032892\|Ga0335081_10641506	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → unclassified Streptosporangiales → Streptosporangiales bacterium	1301	Open in IMG/M
3300032896\|Ga0335075_11543384	Not Available	550	Open in IMG/M
3300032898\|Ga0335072_11138558	Not Available	700	Open in IMG/M
3300032954\|Ga0335083_11159776	Not Available	601	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	89.57%
Host-Associated	Host-Associated	10.43%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	78.26%
Aquatic	Environmental → Aquatic	11.30%
Plants	Host-Associated → Plants	10.43%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	70.43%
Freshwater	Environmental → Aquatic → Freshwater	10.43%
Peat	Environmental → Terrestrial → Peat	7.83%
Rhizosphere	Host-Associated → Plants → Rhizosphere	6.96%
Rhizoplane	Host-Associated → Plants → Rhizoplane	2.61%
Sediment	Environmental → Aquatic → Sediment	0.87%
Roots	Host-Associated → Plants → Roots	0.87%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	46.09%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	17.39%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	10.43%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	7.83%
Loam	Environmental → Terrestrial → Soil → Loam	6.96%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	6.96%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.74%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.87%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.87%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.87%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	26.96%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	16.52%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	15.65%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	9.57%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	7.83%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	6.96%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.22%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.48%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	1.74%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.74%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	0.87%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.87%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.87%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.87%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.87%

Habitat	Taxonomy	Distribution
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	12.17%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	11.30%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	10.43%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	9.57%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	8.70%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	7.83%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	6.09%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	4.35%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.35%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.74%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.74%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.74%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.74%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	1.74%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.74%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.74%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.87%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.87%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.87%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.87%
Bog	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog	0.87%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.87%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.87%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.87%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.87%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.87%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.87%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.87%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.87%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.87%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	0.87%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300001356	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007	Environmental	Open in IMG/M
3300002914	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005563	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2	Host-Associated	Open in IMG/M
3300005840	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2	Host-Associated	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006052	Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006575	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLAA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009521	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_9_AC metaG	Environmental	Open in IMG/M
3300009524	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_c_BC metaG	Environmental	Open in IMG/M
3300009698	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300009824	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_6_BS metaG	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010876	Boreal forest soil eukaryotic communities from Alaska, USA - W5-5 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014745	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG	Host-Associated	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300017823	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_3	Environmental	Open in IMG/M
3300017926	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_2	Environmental	Open in IMG/M
3300017932	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_4	Environmental	Open in IMG/M
3300017933	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_1	Environmental	Open in IMG/M
3300017937	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_4	Environmental	Open in IMG/M
3300017942	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_3	Environmental	Open in IMG/M
3300017943	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4	Environmental	Open in IMG/M
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental	Open in IMG/M
3300017959	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_10_MG	Environmental	Open in IMG/M
3300017972	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017974	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MG	Environmental	Open in IMG/M
3300017975	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300017995	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_1	Environmental	Open in IMG/M
3300017999	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP10_10_MG	Environmental	Open in IMG/M
3300018001	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_5	Environmental	Open in IMG/M
3300018086	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_10_MG	Environmental	Open in IMG/M
3300019787	Permafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (PacBio error correction)	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300029943	I_Palsa_N3 coassembly	Environmental	Open in IMG/M
3300030053	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E1_2	Environmental	Open in IMG/M
3300030058	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E3_1	Environmental	Open in IMG/M
3300030490	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_N3_3	Environmental	Open in IMG/M
3300030618	II_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030707	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG (v2)	Environmental	Open in IMG/M
3300031236	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_1	Environmental	Open in IMG/M
3300031525	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental	Open in IMG/M
3300031779	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f22	Environmental	Open in IMG/M
3300031798	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f19	Environmental	Open in IMG/M
3300031819	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21	Environmental	Open in IMG/M
3300031860	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f25	Environmental	Open in IMG/M
3300031896	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19	Environmental	Open in IMG/M
3300032055	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f23	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300032782	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.1	Environmental	Open in IMG/M
3300032783	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3	Environmental	Open in IMG/M
3300032828	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4	Environmental	Open in IMG/M
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental	Open in IMG/M
3300032895	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3	Environmental	Open in IMG/M
3300032896	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.4	Environmental	Open in IMG/M
3300032898	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.1	Environmental	Open in IMG/M
3300032954	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.2	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
INPhiseqgaiiFebDRAFT_1007660951	3300000364	Soil	MTVAIPAVTFPGGGTGRDXTGHRPASGLLVIMAGPVXPXPGPGSQPVPPRWSRDRSGLWL
JGI12269J14319_100246841	3300001356	Peatlands Soil	MTVSTPVVTFPGAGTGREITSQSLGSGLLLIVSGPAAPAHDHGGQPAPPGLSRDRSGLWLRNAAAGLSVLAAAAAVVSFTAQFRMVDAIRHLPVVA
JGI25617J43924_102494432	3300002914	Grasslands Soil	MTVAIPAVTLPGAGPGQEITGHSSASGLVVIMSGPAAPAPGPGGQPAPPRWPGDRSGL
Ga0062389_1013487613	3300004092	Bog Forest Soil	MTVAIPAVTFPGAGPGRDLTGHLPTPGLLVIMARPAAPAPGPGRQPAPPRWPGDRSGLWLRNAAAGLCV
Ga0070683_1017423461	3300005329	Corn Rhizosphere	MTVAIPTVTFPGGGTGRDMTGLLPASGLLVIMARPVAPAPGPGSQPVPPRWSRDRSGLWLRNAAAGLCVLAAAAAAVSFTAQYRMVDATRHLPVVAALEA
Ga0070706_1011477331	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MTVAIPAVTFPNSGTGRHITGHPPASGLLVIMAGPAASPPGPGSQPVPLRWSRDRSGLWLRNAAAGLC
Ga0070707_1012821381	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MTVAIPAVTFPNSGTGRHITGHLPASGLLVIMAGPAASPPGPGSQPVPLRWSRDRSGLWLRNAAAGLCVLAAAAAAVSFTAQYRMVD
Ga0068855_1019689031	3300005563	Corn Rhizosphere	MTVAIPAVTFPGGGTGRDMTGHRPASGLLVIMARPAAPVPGPGSQPIPPRWSRDRSDLWLRHAAAGLCVLAAAAAAV
Ga0068870_111597222	3300005840	Miscanthus Rhizosphere	MTVAIPAVTFPGGGTGRDMTGHRPASGLLVIMARPVEPAPGPGSQPVAPGWSRDRSGLWLRNAAAGLCVLAAA
Ga0070766_105494072	3300005921	Soil	MTVAIPAATLPGPGTSQDMTGHLPTSGLLVIMSRPVAPASGHGSPPVPPRWSRDRSGLWLRHAAAGLC
Ga0066652_1020497201	3300006046	Soil	MTVAIPAVTFPGAGIGRGMNGPRPASGLLVIMAGPVAPPPGRSSQPVSPTWFRDRSGLWLRNAAAGLCVLAAAAAAVSFTAQYRMVDATRHLPV
Ga0075029_1005482711	3300006052	Watersheds	MTVAIPAVTFPGGGTGRDMTGHRPASGLLVIMARPVAPTPGPGSQPVPPRWSRDRSGLWLRNAAAGLCVLAAAAAAVSFTAQYRMVDATRHL
Ga0070712_1014063362	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MTVAIPAVTFPGGGTGRDMTGHRPASGLLVIMAGPVAPPPGPGSQPVPSRWSRDRSGLWLRNAAAGLCVLAAAA
Ga0070765_1021662842	3300006176	Soil	MTISNPPVTFPGARTGRDMTGHPLTSGLVLIMSRPAAPDSGHGSQPAPPRWSRDRSGLWLRNAAAGLCVLA
Ga0074053_117681951	3300006575	Soil	MTVAIPAVTFPSARTGRDMTGHRPASGLMVIMAGPVAPPPGPGSQPVPARWSRDRSGLWLRNAAAGLCVLAAAA
Ga0075424_1028025031	3300006904	Populus Rhizosphere	MTVATPAVTFPGGGTGRDMTGHRPASGLLVIMARPVAPAPGPGSQPVPPGWSRDRSGLWLRNAAAGLCVLAAAAAAV
Ga0105247_114866301	3300009101	Switchgrass Rhizosphere	MTVAIPAVTFPGGGTGRDTTGHRPASGLMVIMAGPVAPPSGPGSQPVPPRWSRDRSGLWLRNAAAGLCVL
Ga0105248_114127042	3300009177	Switchgrass Rhizosphere	MTVAIPAVTFPNAGTGRDTTGHHPASGLLVIMARPVAPAPGPGSQPVPPRWSRDRSGLWLRNAAAGLCVLAAAAAAVSFTAQYRM
Ga0116222_11633931	3300009521	Peatlands Soil	MTVAIPAITLPCAGTGRDTTGHPPASGLLVIMSGQAVPAPSPGRQPTPPRWPRDRSGLWLRNAAAGLCVLAAAAAAVSFT
Ga0116225_12146851	3300009524	Peatlands Soil	MTVAIPPVTLPSAGTGRDITGHPPASGLLLIMAGPAAPAPGPGRQPAPPRWSRDR
Ga0116225_15097652	3300009524	Peatlands Soil	MTIAIPAVTLPGAGTGRDTTGHPPASGLLLIMAGPAAPAPGPGRQLAPPRWPRDRSGLWLRNAAAGLCVLAAA
Ga0116216_102256083	3300009698	Peatlands Soil	MTVAIPAITLPCAGTGRDTTGHPPASGLLVIMSGQAVPAPSPGRQPTPPRWPRDRSGLWLRNAAAGLCVLAAAAAAVSF
Ga0116216_103893331	3300009698	Peatlands Soil	MTVAIPPVTLPGAGTGRDITGHPPASGLLLIMSGPVAPAPGHGSQPAPPRWPRDRSGLW
Ga0126374_108483802	3300009792	Tropical Forest Soil	MTVAIPAVTFPGARTSRNSTGHPLTSGLLLIVSRPVAPAPGPGSQPAPPRWSGDRSGLWLRNAAAGLCVLAAAAAAVSFTA
Ga0116219_103933563	3300009824	Peatlands Soil	MTVAIPAVSLPGAGTGRDITGRPPASGLLLIMSGPAAPVPGPGSHPAPPRWSRDRSGLWLRNAAAGLCVLAAAAAAVSFTAQYRMAET
Ga0134125_127929542	3300010371	Terrestrial Soil	MTVAIPAVTFPGGGTGQDMTGHRPASGLLVIMAGPVAPAPGPGSQPVPPRWSRDRSGLWLRNAAAGLCVLAAAAAAVSFTAQY
Ga0136449_1014820761	3300010379	Peatlands Soil	MTVAIPPVTLPGAGTGRDIAGHPPASGLLLILAGPAAPAPGPGRQPAPPRWSRDRSGLWLRNAAAGLCVLAAAAAAVSFSAQY
Ga0136449_1032965072	3300010379	Peatlands Soil	MTVAIPAVTFPSVGTGRDLTGHPPASGLLVIMAGPVAPASGPGSQPVPPRWPGDRSGLWLRNAAAGLCVLAAAAAAVSFTAQYRMVDAT
Ga0134126_104413233	3300010396	Terrestrial Soil	MTVAIPAVTFPVSGTGRDMTGHRRPASGLLVIMARPVAPAPGPGSQPVPPRWSRDRSGLWLRNAVAGLCVLAAAAAAVSFTAQYRMVDATRHLPVVAALE
Ga0126361_112048901	3300010876	Boreal Forest Soil	MTISNPLVAFPGTRPGRDMTGRPLAAGLVLIMSRPAAPSSGHSSQPAPPRWPGDRSGLWLRNAAAGLCLLAAAAAAVSFTAQYRMA
Ga0105246_119368362	3300011119	Miscanthus Rhizosphere	MTVAIPAVTFPGGGTGRDMTGHRPASGLLVIMAGPATPAPGPSGRPAPPRWSGDRSGLWLRNAAAGLGVLAAAA
Ga0137392_110679261	3300011269	Vadose Zone Soil	MTISIPSVTFPAPGTGRDTTSRPPASGLLLIMSRPAAPAPGRGRQPAPPRWPGDRSGLWLRNAAAGLIVLAGAAAVVSFTAQYRMADAA
Ga0137365_101308411	3300012201	Vadose Zone Soil	MTVAIPAVTFPGGGTGRDMTGHRPASGLLVIMARPVAPTPDPGSQPVPPRWSKDRSGLWLRNAAAGLCVLAAAAAAVSFTAQYRMV
Ga0137363_111256261	3300012202	Vadose Zone Soil	MTVAIPAVTFPGGGTGRDMTGHRPASGLLVIMARPVAPAPGPGGQPVPPRWSRDRSGLWLRNAAAGLCVLAAAAAAVSFTAQFRMVDATRHLPVVAA
Ga0137380_107712022	3300012206	Vadose Zone Soil	MTVAIPAVTFPGAGTGRDMTGHRPASGLLVIMARPVAPTPGRGSQPVPPTWPRDRSGLWLRN
Ga0137381_106787781	3300012207	Vadose Zone Soil	MTVAIPAVTFPGGGTGRDMTGHRPASGLLVIMARPVVPTPGPGSQPVPPRGSR
Ga0137376_116420081	3300012208	Vadose Zone Soil	MTVAIPACTFPSARTGRDITGHRPASGLLVIMAGPAAPPPGSGSQPVPPRWSRDRSGLWLRNAAAGLCVLAAAAAA
Ga0137384_114209002	3300012357	Vadose Zone Soil	MTISIPPVTFPAPGTGRDTAGHSPASGLLLIMSRPAAPAPGRGRRPAPPGWPGDRSGLWL
Ga0137385_111037911	3300012359	Vadose Zone Soil	MTISIPPLTFPAPGTGRDTTSRPPASGLLLIMSRPAAPAPGRGRRPAPPGWPGDRSGLWLRNAAAGLIVLAGAAAVVSFTAQYRMADAARHL
Ga0137360_109128992	3300012361	Vadose Zone Soil	MTVAIPAVTFSGGRTGRDMTGHRPASGLLVIMARPVAPTPGPGSQPVPPRWSRDRSGLWLRNAAAGLCVLAAAAAAVSFTAQYRMVDATRHLP
Ga0137410_120866391	3300012944	Vadose Zone Soil	MTVAIPAVTFPGGGTGRDMTGHRPASGLLVIMAGPVAPASGPGSQPVPPRWSRDRSGLWLRNAAAGLCVLAAAAAAVSFTAQYRMVDATRHLPVV
Ga0157372_109817611	3300013307	Corn Rhizosphere	MTVATPAVTFPGGGTGRDMTGHRPASGLLVIMAGPVAPTPGPGSQPVSPRWSRDRSDL
Ga0163163_130954611	3300014325	Switchgrass Rhizosphere	MTVAIPAVTFPGGGTGRDMTGHRPASGLLVIMAGPVAPTPGPGSQPVSPRWSRDR
Ga0157377_112903071	3300014745	Miscanthus Rhizosphere	MTVAIPAVTFPGGGTGRDMTGHRPASGLLVIMARPAAPVPGPGSQPIPPRWSRDRSDLWLRNAAAGLC
Ga0157379_110869432	3300014968	Switchgrass Rhizosphere	MTVAIPAVTFPNAGTGRDTTGHHPASGLLVIMAGPATPAPGPGGQPVPPRWSGDRSGLWLRNAAAGLGALAAAAAVVSFTAQYRMAE
Ga0157376_122510732	3300014969	Miscanthus Rhizosphere	MTVAIPAVTFPGGGTGRDTTGHRPASGLLVIMARPVAPPPGHGSQPVPPRWSRDRSDLWLRHAAAGLCVLAAAAAAVSFTAQYRMVDATRHL
Ga0132255_1048726721	3300015374	Arabidopsis Rhizosphere	MTVATPAVTFPGGGTGRDMTGHRPASGLLVIMAGPVEPAPGPGSQPVAPGSSRDRSDLWLRNAA
Ga0182041_108772093	3300016294	Soil	MTIAVPAVTFPGAGTGRDITGRPPASGLLVVMAGPAAPAPGRGSQPAPPRWPGDRSGLWLRNAAAGLCVLAAAAAAVS
Ga0182041_112373991	3300016294	Soil	MTVPISPVAVPATGTGQDLTGRPLTSGLVLIMSGPAPGPGRQPVPPRGPGDRSGLWLRNAAAGLVVLAAAAAAV
Ga0182035_114720751	3300016341	Soil	MTVAIPAVTCPGAGTGRDITGRPPTSGLLLIASRPAAPAPGHGSQPAPPRWSGDRSGLWLRHAAAGLCVLAAAAAAVSFTAQYRMV
Ga0182037_119431142	3300016404	Soil	MTIAVPAVTFPGAGTGRDITGRPPASGLLVVMAGPVAPAPGPGSQPVPPRWSKDRSGLWLRNAAAGLCLLAAA
Ga0182039_106076411	3300016422	Soil	MTVPISPVAVPATGTGQDLTGRPLTSGLVLIMSGPAPAPGPGRQPVAPRGPGDRSGLWLRNAAAGLIVLAAAAAAVSFTAQYRMVDATRHLP
Ga0187818_105635181	3300017823	Freshwater Sediment	MTVSTPVVTFPGAGTGREITGRSLASGLLLIVSGPVAPAPGHVGQPAPPGSSKDRSGLWLRNAAAGLCVLAAAAAAVSFTAQYRMVDATRHL
Ga0187807_12166651	3300017926	Freshwater Sediment	MTIAVPAVTFPGAGTGRDITGRPPASGLLVVMAGPAASAPGPRSQPVPPRWSKDRSGLWQRN
Ga0187807_13088732	3300017926	Freshwater Sediment	MTVAIPAVTFPGGGTGRDMTGHRPASGLLVIMAGPAAPAPCPGRQPVPPRWPRDRSGLWLRNAAAGLCVLA
Ga0187814_103797021	3300017932	Freshwater Sediment	MTVSTPVVTFPGAGTGREITGRPLASGLLLIVSGPVAPAHDHGGQPAAPGSSRDRSGLWLRNAAAGLCVLAAAAAAVSFTAQFRMVDATRHLPVVAALE
Ga0187801_100909993	3300017933	Freshwater Sediment	MTGHLPTSGLLVIMSRPAARLPGYGSHPAPPRWPGDRSGLWLRHAAAGLCVLAAAAAAVSFSAQYRMVDAVRHLPVVAAL
Ga0187809_101691561	3300017937	Freshwater Sediment	MTIAGPVVTFPCAGTGRDITGHPPTSGLLLIMSRPVVPAPGHGSQPAPPRRSRDPSGLWLRHAAAGLCVLAAAAAAVSFTAQY
Ga0187808_104173751	3300017942	Freshwater Sediment	MTVSTPVATFPGAGTGRDLTGRPLASGLLLIMSGPVAPAHDHGGQPAPSGSSRDRSGLWLRNAAAGLCVLAAAAAVVSFTAQYRMAEAARHL
Ga0187819_107049971	3300017943	Freshwater Sediment	MTVSIPSVRFPAAGNGRDMTGRLVTSGLVLIISRPAAPAPGHGRHPVPPRWSRDRSGLWLRNAAAGLCVLAAAAAAVSFTAQYRMAE
Ga0187817_109093051	3300017955	Freshwater Sediment	MTVSTPVVTFPGAGTGREITGRPLASGLLLIVSGPVAPAPGNGGQPAPPGLSRDRSGLWLRNAAAGLCVLAAAAAAVSFTAQYRMVD
Ga0187779_105729271	3300017959	Tropical Peatland	MTVAIPAVTLPGTGTSQDMTGHLPTSGLLVIMSRPAGPVPGRGSQPAPPGRPGDRSGLWLRHAAGGLCVLAAAA
Ga0187781_103214611	3300017972	Tropical Peatland	MTIAVPAVTFPGAGTGRDITGRPLAPGLLVVMAGPVAPAPGSGSQPAPPRWSKDRSGLWLRNAAAGLCVLAAAAAA
Ga0187777_109832141	3300017974	Tropical Peatland	MTVSSSAITFPGAGSGRYITGHPASSGLLVIMSRPAAPAPGHGSQPAPPRWPGDRSGLWLRHAAGGLCVLAAAAAAVSF
Ga0187782_101962231	3300017975	Tropical Peatland	LTFPGARTGRDMTGRPVTSGLVLIMSRPAAPDSGHGSQPAPPRWSRDRSGLWLRNAAAGLCVLAAAAAAVSFTASGGLRYQDCLNASQVGT
Ga0187816_105149842	3300017995	Freshwater Sediment	MTVAIPAVTLPGAGTSQDMTGPLPTSGLLVIMSRPVAPAPGHGSQPAPPSWPGDRSGLWLRHAAAGLCVLA
Ga0187767_101450421	3300017999	Tropical Peatland	MTVALPAVTLPGVATSRDMTGHLPASGLLVIMSRPAAPVPGHGSQPAPPRWPGDRSGLWLRHAAGGLCVLA
Ga0187815_103444892	3300018001	Freshwater Sediment	MTIAVPAVTFPGAGTGRDITGRPPASGLLVVMAGPVAPAPGPGSQPVPPRWSKDRSGLWLRNAA
Ga0187769_109658212	3300018086	Tropical Peatland	MTVAIPSLTLPGTRTSRDLASHPLAPGLLVITARPDAPAPRSGRHPAPPSWPADRSGLWLRHAAAGLCILAA
Ga0187769_110060111	3300018086	Tropical Peatland	MTVAIPAVTLPGAGTSQDMTGHPPASGLLVIMSRPAAPASGRGSQPVPSGRSRDRSGLWLRNAATGLCVLAAAAA
Ga0182031_12888983	3300019787	Bog	MTIAIPAVTLPGAGTGRDITSHLPASALLLIMAGPAGPAPGPGSQPAPPRWPKDRSGLWLRNAAPGCACWPQPRRR
Ga0210383_108947972	3300021407	Soil	MTISNPLVAFPGTRPGRDMTGRPLAAGLVLIMSRPAVPSSGRSSQPAQPRWPGDRSGLWLRNAAAGLCLLAAAAA
Ga0210390_100917213	3300021474	Soil	MTVSIPPVAFPGTGTSRELTGRRLTSGLILIMARPSAPAPGYGHQPVPPKWPGDRSGLWLRNAATGLCLLAAAAAAVSFTAQYRMVDATRHLPLVAALE
Ga0210390_116011862	3300021474	Soil	MTISNPPVAFPGTRPGRDLTGRPLTAGLVLIMSRPAAPSSGHSSQPAPPRWPGDRSGLWLRNAAAGLCVLAAAAA
Ga0207692_101641003	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	MTLAIPAVTFPSARTGRDITGHAPASGLLVIMAGPVAPPPRPGGQLVPPRWSRDRSGLWLRNAAAGLCVLAAAAAAVSFTAQY
Ga0207684_110223452	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MTVAIPAVTFPNSGTGRHITGHPPASGLLVIMAGPAASPPGPGSQPVPLRWSRDRSGLW
Ga0209648_101273955	3300026551	Grasslands Soil	MTVAIPAVTLPGAGTSQDMTGHLPTAGLLVIMSRPVAPAPGHGSQPAPPRWSRDRSGL
Ga0311340_115533212	3300029943	Palsa	MTVAIPAVTFPGARTSRDMIGRPPAPGLLVIMSGPAAPAADPGRQPAPPRQLGDRSGLWLRN
Ga0302177_102934412	3300030053	Palsa	MTVSIPPVTFPGTGTSRELTGRRLTAGLVLIMSGPTAPTPGHGSQSAPPRWPGDRSGLWLRNAAAGLCLLAAAAA
Ga0302179_105631792	3300030058	Palsa	MTVAIPAITLPGAGTGRDLTGQLPASGLLLIMSGPVAPAPGPGSQSAPPRWPKDRSGLWLRNAAAGLCLLAAAAAAVSFTAQYRMVDATR
Ga0302184_103472682	3300030490	Palsa	MTVAIPAVTFPGAGTGRDMIGRPPAPSLLVIMAGPAAPAADPGRQPAPPRRLGDRSGLWLRNAAGGLCVLAAAAA
Ga0311354_119408682	3300030618	Palsa	MTVAIPAVTFPGAGTGRDMIGRPPAPGLLVIMAGPAAPAADPGRQPTPP
Ga0310038_104639942	3300030707	Peatlands Soil	MTIAIPPVTLPGAGTGRDITGHPPASGLLLIMSGPAAPAPGPGRQPAPPRWPRDRSGLWLRNAAAGLCVLAAAAAAVSFTAQYR
Ga0310038_105143952	3300030707	Peatlands Soil	MTVAIPPVTLPSAGTGRDITGHPPASGLLLIMAGPAAPAPGPGRQPAPPRWPRDRSGLWLRNAAAGLCVLAAAAAAVSFTAQY
Ga0302324_1001096524	3300031236	Palsa	MTVSIPPVTFPGTGTSRELTGRRLTAGLILIMSRPTAPTPGYGRQPAPPRWPGDRSGLWLRNAAAGLCLLAAAAAAVSFTAQNRMVEATRHLPTVAAL
Ga0302324_1032141711	3300031236	Palsa	MTVAIPAVTLPGAGTGRDLTGQLPTSGLLLIMSGPVAPAPGPGSQSAPPRWPKD
Ga0302324_1033454031	3300031236	Palsa	MTVAIPAVTLPGAGTGRDITGHHPTPGLLVIMAGPAAPAPGPGRQPAPPRWPGDRSGLWL
Ga0302326_125845531	3300031525	Palsa	MTVSIPPVTFPGTGTSRELTGRRLTAGLVLIMSGPTAPTPGHGSQSAPPRWPGDRSGLWLRNAAAGLCLLAAAAAAVSFTAQYRMVEATRHLPVVAA
Ga0318534_102632321	3300031544	Soil	MTVPISPVAVPATGTGQDLTGRPLTSGLVLIMSGPVPAPGPSRQPVPSRGPGDRSGLWLRNAAAGLVVLAAAAATVSF
Ga0318574_103544081	3300031680	Soil	MTVAIPAVTLPGAGTSRDMTGHLPTSGLLVIISRSAAPGSGHGSQPAPPRRRGDRSGLWLRHAAAGLCVLAAAAAAVSFTAQYRMVDATR
Ga0318572_101612331	3300031681	Soil	MTVPISPVAVPATGTGQDLTGRPLTSGLVLIMSGPVPAPGPSRQPVPSRGPGDRSGLWLRNAAAGLVVLAAAAAAVSFTAQYR
Ga0310686_1147418061	3300031708	Soil	MTVAIPAVTLPGAGTGRDLTGHLPTPGLLVIMARPAAPAPGPGRQPVPPRWPGDRS
Ga0310686_1178506731	3300031708	Soil	MTVSTPVVTFPGAGTGREITGRSLASGLLLIVSGPVAPAPGRSGQPAPPGLSRDRSGLWLRNAAVGLCVLAA
Ga0318502_106693222	3300031747	Soil	MTVPISPVAVPATGTGQDLTGRPLTSGLVLIMSGPAPAPGPGRQPVAPRGPGDRSGLWLRNAAAGLIVLAAAAAAVSFTAQYRMVDATRHLPVVAALEA
Ga0318566_105836783	3300031779	Soil	MTIAVPAVTFPGAGTGRDITGRPPASGLLVVMAGPAAPAPGPGSQPAPPRWSKDRSGLWLRNAAAGPAM
Ga0318523_102387941	3300031798	Soil	MTVAIPAVTLPGAGTSRDMTGHLPTSGLLVIISRSAAPGSGHGSQPAPPRRRGDRSGLW
Ga0318568_102854461	3300031819	Soil	MTVPISPVAVPATGTGQDLTGRPLTSGLVLIMSGPVPAPGPSRQPVPSRGPGDRSGLWLRNAAAGLVVLAAAAAAVSFTAQYRM
Ga0318495_103947062	3300031860	Soil	MTVAIPAVTCPGAGTGRDITGRPPTSGLLLIVSRPAVPAPGRGSQPAPPR
Ga0318551_102218623	3300031896	Soil	MTVAIPAVTLPGAGTSRDMTGHLPTSGLLVIISRSAAPGSGHGSQPAPPRRRGDRSGLWLRHAAAGLCVLA
Ga0318575_104728002	3300032055	Soil	MTVAIPAVTLPGAGTSRDMTGHLPTSGLLVIISRSAAPGSGHGSQPAPPRRRGDRSGLWLRHAAAGLCVLAAAAAAVSFTAQYR
Ga0311301_103744354	3300032160	Peatlands Soil	MTVAIPAVTLPGAGTGRDITGHPPASGLLLIMSGPVAPAPGHGSQPAPPRWPRDRSGLWLRNAAAGLCVLAAAAAAVSFTAQYRMVEATR
Ga0311301_108262913	3300032160	Peatlands Soil	MTVSTPVVTFPGAGTGREITSQSLGSGLLLIVSGPAAPAHDHGGQPAPPGLSRDRSGLWLRNAAAGLSVLAAAAAVVSFTAPFRM
Ga0311301_113429211	3300032160	Peatlands Soil	MTVAIPPVTLPSAGTGRDITGHPPASGLLLIMAGPAAPAPGPGRQPAPPRWPKDRSGLWLRNAAAGLCVLAAAAAAVSFTA
Ga0335085_111876792	3300032770	Soil	MTISIPPLAFPVAGTGRDTTSRPPASGLVLIMSRPAAPAPGHGRQPAPPGWPGDRSGLWLRNAAAGLIVLAAAAAVVSFTAQYRMADAARH
Ga0335085_120258722	3300032770	Soil	MTVPISPVAVPATGTGQDLTGRPLTSDLVLIMSGPAPALSHGRQPIPPRGPGDRSGLWLRNAAAGLVVLAAAAATVSFTAQYRMVDATRHLPVVAALE
Ga0335082_107129961	3300032782	Soil	MTIAIPAVTFPGAGTGRDMAGHRPASGLLVIMGRPGAPPPGPGSQPVLARCSRDRSGLWLRNAAA
Ga0335082_107486142	3300032782	Soil	MTVAIPALTCPGAGTGRDITGYPPASGLVVIMARPAGPAPGPGGQPAPPRWPGDRSGLWLRNAAAGLCVLAAAAAV
Ga0335079_106921951	3300032783	Soil	MTVSIPPVAFPGIGTSRELIGRPLASGLVLIVSRPAASALGYGRPPAQPGPPGDRSGLWLRNAAAGLCVLAAAAAVVSFTAQYRMA
Ga0335080_110096841	3300032828	Soil	MTVAIPAVTFPSAGTGRAMTGYPPAAGLLVIMAGPATPAPGPGGRPGPPRWSGDRSGLWLRNATAGLGVLAAAAAVVSFTAQYRMA
Ga0335081_100894805	3300032892	Soil	MTLSIPPLAFPAAGTGRDTTSRPPASGLVLIMSRPAAPAPGHGRQPAPPGWPGDRSGRWLRNAAAGLIVLAAAAAVVSFTAFGGLRYRNCLNAFEGRVGWGLAVSLLAGCGG
Ga0335081_106415063	3300032892	Soil	MTISILPLAFPAAGTSRDTTSRPPASGLVLIMSRPAAPAPGHGRQPAPPGWPGDRSGLWLRNAAAGLIVLAAAAAVVSFTAFGGLRYRNCLNAFEGRVGW
Ga0335074_109299792	3300032895	Soil	MTVAIPPVVIPARGTGRDMTGHSVSSGLVLIMSRPAVPAPGHGHQAAPPQW
Ga0335075_115433842	3300032896	Soil	MTVAIPAVTFPSAGIGRATTGRPPTSGLLVIMAGPATPAPGPGGRPVPPRWSGDRSGLWLRNAAAGLGVLAAAAAVVSFTAQYRMDETA
Ga0335072_111385583	3300032898	Soil	MTISNPPVAFPGTRPGRDMTGRPVTAGLVLIMSRPAAPPSGHSSQPAPPRWSRDRSGLWLRNAAAGLCLLAAAAAAVSFTAQYRMVDATRHLPAIAA
Ga0335083_111597762	3300032954	Soil	MTVAIPAVTFPGGGTGRDMTGHRPASGLLVILARPVAPAPGPGSQPVPPRWSRDRSDLWLRNAAAGLCVLAAAAAAVSFT

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.33
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.33
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F080298

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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