NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F080276

Metagenome / Metatranscriptome Family F080276

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F080276
Family Type Metagenome / Metatranscriptome
Number of Sequences 115
Average Sequence Length 42 residues
Representative Sequence ITAAYPEADRIRCYEYSVDDEFAREVAPLVRSGEKWLPGA
Number of Associated Samples 102
Number of Associated Scaffolds 115

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 8.70 %
% of genes from short scaffolds (< 2000 bps) 8.70 %
Associated GOLD sequencing projects 96
AlphaFold2 3D model prediction Yes
3D model pTM-score0.60

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (93.043 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(38.261 % of family members)
Environment Ontology (ENVO) Unclassified
(39.130 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(42.609 % of family members)



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Multiple Sequence Alignments

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 0.00%    β-sheet: 36.76%    Coil/Unstructured: 63.24%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.60
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 115 Family Scaffolds
PF05199GMC_oxred_C 4.35
PF00903Glyoxalase 4.35
PF07452CHRD 3.48
PF00067p450 3.48
PF02774Semialdhyde_dhC 2.61
PF135632_5_RNA_ligase2 1.74
PF03641Lysine_decarbox 1.74
PF07690MFS_1 0.87
PF07662Nucleos_tra2_C 0.87
PF00701DHDPS 0.87
PF13546DDE_5 0.87
PF03092BT1 0.87
PF03328HpcH_HpaI 0.87
PF13551HTH_29 0.87
PF01850PIN 0.87
PF00271Helicase_C 0.87
PF13586DDE_Tnp_1_2 0.87
PF01243Putative_PNPOx 0.87
PF01050MannoseP_isomer 0.87
PF06186DUF992 0.87

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 115 Family Scaffolds
COG2303Choline dehydrogenase or related flavoproteinLipid transport and metabolism [I] 4.35
COG2124Cytochrome P450Defense mechanisms [V] 3.48
COG0002N-acetyl-gamma-glutamylphosphate reductaseAmino acid transport and metabolism [E] 2.61
COG0136Aspartate-semialdehyde dehydrogenaseAmino acid transport and metabolism [E] 2.61
COG03294-hydroxy-tetrahydrodipicolinate synthase/N-acetylneuraminate lyaseCell wall/membrane/envelope biogenesis [M] 1.74
COG1611Nucleotide monophosphate nucleosidase PpnN/YdgH, Lonely Guy (LOG) familyNucleotide transport and metabolism [F] 1.74
COG0469Pyruvate kinaseCarbohydrate transport and metabolism [G] 0.87
COG1972Nucleoside permease NupCNucleotide transport and metabolism [F] 0.87
COG2301Citrate lyase beta subunitCarbohydrate transport and metabolism [G] 0.87
COG38362-keto-3-deoxy-L-rhamnonate aldolase RhmACarbohydrate transport and metabolism [G] 0.87


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A93.04 %
All OrganismsrootAll Organisms6.96 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300005541|Ga0070733_10795487Not Available635Open in IMG/M
3300009012|Ga0066710_103802224All Organisms → cellular organisms → Bacteria → Proteobacteria566Open in IMG/M
3300016357|Ga0182032_10393966All Organisms → cellular organisms → Bacteria1118Open in IMG/M
3300020581|Ga0210399_11583443All Organisms → cellular organisms → Bacteria506Open in IMG/M
3300021560|Ga0126371_10862841All Organisms → cellular organisms → Bacteria1050Open in IMG/M
3300026550|Ga0209474_10354469All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium818Open in IMG/M
3300027729|Ga0209248_10134430Not Available740Open in IMG/M
3300031793|Ga0318548_10652108All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium511Open in IMG/M
3300031941|Ga0310912_10675610All Organisms → cellular organisms → Bacteria → Proteobacteria801Open in IMG/M
3300032090|Ga0318518_10690237All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium → unclassified Methylobacterium → Methylobacterium sp. 2A519Open in IMG/M



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil38.26%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil9.57%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil8.70%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil4.35%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil4.35%
Bog Forest SoilEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil3.48%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil3.48%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil2.61%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil2.61%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment1.74%
Bulk SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Bulk Soil1.74%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil1.74%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere1.74%
GroundwaterEnvironmental → Aquatic → Freshwater → Groundwater → Contaminated → Groundwater0.87%
Iron-Sulfur Acid SpringEnvironmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring0.87%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil0.87%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil0.87%
Serpentine SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil0.87%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil0.87%
Surface SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil0.87%
Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil0.87%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural → Soil0.87%
SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Soil0.87%
Agricultural SoilEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil0.87%
Avena Fatua RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere0.87%
Tabebuia Heterophylla RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere0.87%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere0.87%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere0.87%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere0.87%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere0.87%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere0.87%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300002245Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)EnvironmentalOpen in IMG/M
3300004082Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3EnvironmentalOpen in IMG/M
3300004635Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3EnvironmentalOpen in IMG/M
3300005334Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2Host-AssociatedOpen in IMG/M
3300005541Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1EnvironmentalOpen in IMG/M
3300005554Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110EnvironmentalOpen in IMG/M
3300005937Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1Host-AssociatedOpen in IMG/M
3300006028Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaGEnvironmentalOpen in IMG/M
3300006032Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145EnvironmentalOpen in IMG/M
3300006176Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5EnvironmentalOpen in IMG/M
3300006755Agricultural soil microbial communities from Georgia to study Nitrogen management - GA PlitterEnvironmentalOpen in IMG/M
3300006847Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5Host-AssociatedOpen in IMG/M
3300006893Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaGEnvironmentalOpen in IMG/M
3300007258Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3EnvironmentalOpen in IMG/M
3300009012Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159EnvironmentalOpen in IMG/M
3300009090Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaGEnvironmentalOpen in IMG/M
3300009137Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158EnvironmentalOpen in IMG/M
3300010166Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot27EnvironmentalOpen in IMG/M
3300010366Tropical forest soil microbial communities from Panama - MetaG Plot_24EnvironmentalOpen in IMG/M
3300010376Tropical forest soil microbial communities from Panama - MetaG Plot_28EnvironmentalOpen in IMG/M
3300010401Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1EnvironmentalOpen in IMG/M
3300011271Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaGEnvironmentalOpen in IMG/M
3300012212Combined assembly of Hopland grassland soilHost-AssociatedOpen in IMG/M
3300012349Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaGEnvironmentalOpen in IMG/M
3300012357Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaGEnvironmentalOpen in IMG/M
3300012362Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaGEnvironmentalOpen in IMG/M
3300012683Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaGEnvironmentalOpen in IMG/M
3300012929Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012971Tropical forest soil microbial communities from Panama - MetaG Plot_1EnvironmentalOpen in IMG/M
3300012972Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_24_1 metaGEnvironmentalOpen in IMG/M
3300014968Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaGHost-AssociatedOpen in IMG/M
3300016294Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178EnvironmentalOpen in IMG/M
3300016319Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00HEnvironmentalOpen in IMG/M
3300016357Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000EnvironmentalOpen in IMG/M
3300016371Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172EnvironmentalOpen in IMG/M
3300017932Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_4EnvironmentalOpen in IMG/M
3300017955Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2EnvironmentalOpen in IMG/M
3300018431Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104EnvironmentalOpen in IMG/M
3300019888Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1c2EnvironmentalOpen in IMG/M
3300020580Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-MEnvironmentalOpen in IMG/M
3300020581Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-MEnvironmentalOpen in IMG/M
3300021088Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-MEnvironmentalOpen in IMG/M
3300021170Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-MEnvironmentalOpen in IMG/M
3300021180Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-OEnvironmentalOpen in IMG/M
3300021439Vellozia epidendroides bulk soil microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - BS_R03EnvironmentalOpen in IMG/M
3300021560Tropical forest soil microbial communities from Panama - MetaG Plot_4EnvironmentalOpen in IMG/M
3300022506Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-26-M (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300022528Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300022529Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300022714Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300025916Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025929Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025932Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025972Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300026550Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145 (SPAdes)EnvironmentalOpen in IMG/M
3300026999Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF044 (SPAdes)EnvironmentalOpen in IMG/M
3300027099Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF026 (SPAdes)EnvironmentalOpen in IMG/M
3300027729Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM1 (SPAdes)EnvironmentalOpen in IMG/M
3300027787Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter (SPAdes)EnvironmentalOpen in IMG/M
3300027815Subsurface groundwater microbial communities from S. Glens Falls, New York, USA - GMW46 contaminated, 5.4 m (SPAdes)EnvironmentalOpen in IMG/M
3300027829Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM1 (SPAdes)EnvironmentalOpen in IMG/M
3300027903Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)EnvironmentalOpen in IMG/M
3300027908Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)EnvironmentalOpen in IMG/M
3300028047Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)EnvironmentalOpen in IMG/M
3300031469Fir Spring Coassembly Site 11 - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031564Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21EnvironmentalOpen in IMG/M
3300031573Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111EnvironmentalOpen in IMG/M
3300031681Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20EnvironmentalOpen in IMG/M
3300031723Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f23EnvironmentalOpen in IMG/M
3300031744Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)EnvironmentalOpen in IMG/M
3300031747Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22EnvironmentalOpen in IMG/M
3300031754Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515EnvironmentalOpen in IMG/M
3300031768Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22EnvironmentalOpen in IMG/M
3300031771Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19EnvironmentalOpen in IMG/M
3300031777Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f24EnvironmentalOpen in IMG/M
3300031780Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f21EnvironmentalOpen in IMG/M
3300031793Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f21EnvironmentalOpen in IMG/M
3300031795Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f19EnvironmentalOpen in IMG/M
3300031819Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21EnvironmentalOpen in IMG/M
3300031821Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f20EnvironmentalOpen in IMG/M
3300031858Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D2EnvironmentalOpen in IMG/M
3300031879Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)EnvironmentalOpen in IMG/M
3300031890Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)EnvironmentalOpen in IMG/M
3300031896Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19EnvironmentalOpen in IMG/M
3300031912Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)EnvironmentalOpen in IMG/M
3300031941Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080EnvironmentalOpen in IMG/M
3300031945Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082EnvironmentalOpen in IMG/M
3300031946Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172EnvironmentalOpen in IMG/M
3300031947Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000HEnvironmentalOpen in IMG/M
3300031954Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)EnvironmentalOpen in IMG/M
3300031962Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515EnvironmentalOpen in IMG/M
3300032010Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f22EnvironmentalOpen in IMG/M
3300032025Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f20EnvironmentalOpen in IMG/M
3300032051Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f26EnvironmentalOpen in IMG/M
3300032052Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f19EnvironmentalOpen in IMG/M
3300032059Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27EnvironmentalOpen in IMG/M
3300032066Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18EnvironmentalOpen in IMG/M
3300032068Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f21EnvironmentalOpen in IMG/M
3300032090Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f22EnvironmentalOpen in IMG/M
3300032091Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f25EnvironmentalOpen in IMG/M
3300032094Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f25EnvironmentalOpen in IMG/M
3300032174Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGIcombinedJ26739_10049997023300002245Forest SoilTAAYPEADRIRCYEYSVDDEFAREVAPLIRSGAKWLPGA*
Ga0062384_10070547513300004082Bog Forest SoilEALAAIAAAYPEADRVRCYEYTVDDEFAREVAPLVRSGKDWLPGA*
Ga0062388_10103460113300004635Bog Forest SoilLAEALAAIAAAYPEADLIRCYEYLVDDEYTREVAPLLRSGERWLPEA*
Ga0068869_10012566313300005334Miscanthus RhizosphereEALDAIGSAFPDIARIRCYEYTVDNEFPVEVPPLICSGDKWRPAG*
Ga0070733_1079548713300005541Surface SoilEALAAIEAAYPETGRIRCYEYTVDDEFAREAAVLVKSNGKWAPSEEPS*
Ga0066661_1087073213300005554SoilADRVRCYEYSVDDEFAREVAPLIRSGEKWLPGSQ*
Ga0081455_1077727523300005937Tabebuia Heterophylla RhizosphereALAAIGAAYPAADRIRCYEYTVDDEFAREVAPLVRSGEKWAPGG*
Ga0070717_1089897213300006028Corn, Switchgrass And Miscanthus RhizosphereRIRCYEYTVDDEYAREVAPLIRSGDKWLPGEDLA*
Ga0066696_1065214113300006032SoilDEALAAIDAAYPDADRIRCYEYTIDDEFAREVAPLIKSAGNWRPDRSEA*
Ga0070765_10013623713300006176SoilYRDADHIRCYEYTVDDEYAREVAPLVKSSGKWQPGDSPRP*
Ga0079222_1255230223300006755Agricultural SoilAAITAAYPDADRIRCYEYSVDDEFAREVAPLVRSGEKWVPGS*
Ga0075431_10198911023300006847Populus RhizosphereAAYPAADHIRCYEYSVDDEFAREVAPLLRSGEKWVPGA*
Ga0073928_1113789113300006893Iron-Sulfur Acid SpringSAAALAAIMAAYPEAERIRCYEYSVDDEFAREVPPLVRSGEKWLPGG*
Ga0099793_1070738713300007258Vadose Zone SoilLAAIGTAYPDADRIRCYEYTVDDEYAREVAPLLKSGDKWRPADGSA*
Ga0066710_10380222413300009012Grasslands SoilEALAAIDAACPEADRIRCYEYTVDDEYAREVAALVKSGDRWRPGVSPPAEDA
Ga0099827_1028215833300009090Vadose Zone SoilLWEALAAIDAACPEADRIRCYEYTVDDEYAREVAPLVRAGDKWRPEGTR*
Ga0066709_10303185913300009137Grasslands SoilALVAIDAAYPNAERIRCYEYTVDDEFAREVAPLIKSNRKWRPLDGMQN*
Ga0126306_1188974413300010166Serpentine SoilEALAAIDAAYPQAERIRCYEYTVDDEYAREVAPLAKSGGKWRPRVDPR*
Ga0126379_1218456823300010366Tropical Forest SoilAAYPDAQRIRCYEYSVDDEFAREVTPLVRSGEKWVPGV*
Ga0126381_10116970413300010376Tropical Forest SoilPDAQRIRCYEYSVDDEFAREVTLLVRSGDKWAPGG*
Ga0126381_10419225723300010376Tropical Forest SoilAVQRIRCYEYSVDNEFPVEVAPLVRSGDKWLPGA*
Ga0134121_1155862013300010401Terrestrial SoilLGEALDAIGSAFPEIDRIRCYEYTVDNEFPVEAPPLVRSGDKWRPAG*
Ga0137393_1028219033300011271Vadose Zone SoilGALAAIVAAYPEADRIRCYEYSVDNEFPVEVAPLVRSGEKWVPGA*
Ga0137393_1065218723300011271Vadose Zone SoilGALAAIVAAYPEADRIRCYEYSVDNEFPVEVAPLVRSGEKWLPGA*
Ga0150985_10837085223300012212Avena Fatua RhizosphereAIRAAYPETDRIRCYEYSVDDEFAREVPPLVRSGEKWLPGG*
Ga0137387_1128288023300012349Vadose Zone SoilAAIMAAYPEADRIRCYEYSVDNEFPVEVATLLRSGEKWLPGA*
Ga0137384_1040114023300012357Vadose Zone SoilISAAYPEVDRIRCYEYSVDNEFPVEVAPLLRSGEKWLPDA*
Ga0137361_1031213723300012362Vadose Zone SoilMAAYPEADRIRCYEYSVDNEFPVEVAPLLRSGEKWLPGA*
Ga0137398_1027750013300012683Vadose Zone SoilALAAITAAYPQAHRIGCYEYSVDNEFPVEVAPLLWSGEKWVPEG*
Ga0137404_1045042823300012929Vadose Zone SoilIAAAYPEADRIRCYEYSIDNEFPVEVAPLLRSGEKWLPGA*
Ga0126369_1197901523300012971Tropical Forest SoilYPEAQRIRCYEYSVDNEFPVEVAPLLRSGEKWIPGT*
Ga0134077_1050017023300012972Grasslands SoilAAYPEAERIRCYEYSVDNEFPVEVAPLVRSGEKWLPGA*
Ga0157379_1149761713300014968Switchgrass RhizosphereIETAHPEVGRIRCYEYTVDDEYAREVAPLVRSAEGWRPEGGR*
Ga0182041_1055953123300016294SoilAYPEADRICCYEYTVDDEFAREVAPLVRTGDKWLSGA
Ga0182033_1201773913300016319SoilYPEADRIGCYEYTVDDEFAREVAPLVRSGKNWMPVV
Ga0182032_1039396613300016357SoilFGTLAEALAAITAAYPHAARIRCYEYTVDDEFAREVRPLVRSGASWLPGV
Ga0182034_1082408223300016371SoilAAYPEADHIRCYEYTVDDEFAREVAPLERSGEKWVPDA
Ga0187814_1042965133300017932Freshwater SedimentHPKAQRIRCYEYSVDDEFAREVPPLVRSGDNWQPGV
Ga0187817_1067422513300017955Freshwater SedimentAMSIRCYEYSVDNEYPVEAALLVRSQGKWLPAGDISH
Ga0066655_1032731233300018431Grasslands SoilYPEADRIRCYEYSVDDEYAREVAPLVRSGEKWLPGS
Ga0193751_122654123300019888SoilAAIAAAHPAAERIRCYEYTVDDEYPVEVAPLVRSGDKWRPADNPSP
Ga0210403_1050958823300020580SoilITAAYPEADRIRCYEYSVDDEFAREVAPLIRSGAKWLPGA
Ga0210399_1158344323300020581SoilFETLAEALAAITAAYPEAERIRCYEYSVDDEFAREVAPLLRSGEKWVPGT
Ga0210404_1024529623300021088SoilPEAERIRCYEYSVDNEFPVEVAPLLRSGEKWVPGT
Ga0210400_1035341533300021170SoilILAAYPEADRIRCYEYSVDNEFPVEVAPLVRSAEKWLPGA
Ga0210400_1102008613300021170SoilIMAAYPEADRIRCYEYSVDDEFAREVAPLLRSGEKWLPGA
Ga0210396_1035471013300021180SoilITAAYPEADRIRCYEYSVDDEFAREVAPLVRSGEKWLPGA
Ga0213879_1014029423300021439Bulk SoilEADRIRCYEYSVDDEFAREVAPLLRCGEKWLPGGA
Ga0213879_1014884323300021439Bulk SoilLVAVTAAYPGAERIRCYEYTVDDEFAREVAPLLRSGEKWTPAA
Ga0126371_1086284113300021560Tropical Forest SoilDFDTLAEALAAITAAHPGADRIRCYEYTVDDEFAREVAPLVRSGENWLPGA
Ga0242648_100985423300022506SoilGALAAIAAAYPEADRIRCYEYSVDDEYAREVAPLLRSGEKWLPAV
Ga0242669_103628623300022528SoilALAAIAAAYPEADRIRCYEYSVDDEYAREVAPLLRSGEKWLPAV
Ga0242668_101350023300022529SoilAAYPEADRIRCYEYSVDDEFAREVAPLVRSGEEWLPGA
Ga0242671_112925423300022714SoilYPEADRIRCYEYSVDDEYAREVAPLLRSGEKWLPAV
Ga0207663_1011596113300025916Corn, Switchgrass And Miscanthus RhizosphereTLATALAAIMAAYPEAERIRCYEYSVDDEFAREVPPLVRSGEKWLPGG
Ga0207664_1151396123300025929Agricultural SoilLAAIDAAYPDAVRIRCYEYTVDDEFAREVAPLVKSTGKWRPDSSR
Ga0207690_1011418113300025932Corn RhizosphereLNTSTSFPDIARIRCYEYTVDNEFPVEVPPLIRSGDKWRPAG
Ga0207668_1132443213300025972Switchgrass RhizosphereEALDAIGSAFPDIARIHCYEYTVDNEFPVEAPPLVRSGDKWRPAG
Ga0209474_1035446923300026550SoilKTLAEALAAIKASYPDADRIRCYEYTVDDEFAREVAPLVRSGGKWRPGEGPA
Ga0209474_1051657713300026550SoilDEALAAIDAAYPDADRIRCYEYTIDDEFAREVAPLIKSAGNWRPDRSEA
Ga0207949_100474313300026999Forest SoilAIMAAYPEADRIRCYEYSVDDEFAREVAPLVRSGENWAPGA
Ga0208726_10303523300027099Forest SoilLAEALAAIMAAYPEADRIRCYEYSVDNEFPVEVAPLLRSGEKWLPGD
Ga0209248_1013443013300027729Bog Forest SoilDFDTLAEALAAITAAYPEADRIRCYEYSVDDEFAREVAPLVRSGENWVPGT
Ga0209074_1028695913300027787Agricultural SoilIMAAYPEADRIRCYEYSVDNEFPVEVAPLLRSGKKWLPGA
Ga0209726_1047567323300027815GroundwaterAAAHPEIDRIRCYEYTVDDEYAREVAPLVRSGDKWRPDSSR
Ga0209773_1009467123300027829Bog Forest SoilLAEALAAIAAAYPEADRIRCYEYSVDDEFAREAAPLLRSGEKWLPGA
Ga0209488_1092774313300027903Vadose Zone SoilALASFGAAYPDIERIRCYEYTIDDEYAREVAPLVKSGDKWLPGAGPRAS
Ga0209006_1043577823300027908Forest SoilLAEALAAITAAYPEADRIRCYEYSVDDEFAREVAPLIRSGAKWLPGA
Ga0209526_1029931913300028047Forest SoilYPEADRIRCYEYSVDDEFAREVAPLVRSGEKWLPGA
Ga0170819_1497638513300031469Forest SoilYPESDRIRCYEYSVDDEFAREVAPLVRSGENWAPGA
Ga0318573_1064513513300031564SoilLAEAIAAITAAYPEADQIRCYEYTVDDEFAREVAPLLRSGEKWTPAA
Ga0310915_1020038833300031573SoilASLAEALAAITAAYPEADRIRCYEYTVDNEFPVEVAPLLRSGEKWRPGA
Ga0318572_1035180033300031681SoilLAAITAAYPKADRIRCYEYSVDNEFPVEVTPLLRSGEKWLPDA
Ga0318572_1042587823300031681SoilAYPDADRIRCYEYTVDDEFAREVAPLLRTGEKWMPAA
Ga0318493_1033112813300031723SoilAITAAYPEADRIRCYEYTIDDEFAREVAPLLRIGEKWMPAA
Ga0306918_1133712723300031744SoilAAYPEARRIRCYEYSVDDEFAREVAPLVRSGENWLPSA
Ga0318502_1016033823300031747SoilAAITAAYPGASRTRCYEYSVDNEFPVEVAPLIRSGDNWLPGT
Ga0307475_1074724613300031754Hardwood Forest SoilAYPEADRIRCYEYSVDDEYAREVAPLLRSGEKWLPAV
Ga0318509_1004882113300031768SoilYPEADRIRCYEYSVDNEFPVEVTPLLRSGEKWLPDA
Ga0318546_1000203283300031771SoilAAYPEADRIRCYEYTIDDEFAREVAPLLRIGEKWMPAA
Ga0318546_1069100723300031771SoilLAAITAAYPTAHRIRCYEYTVDDEFAREAAPLVRSGESWRPGV
Ga0318543_1000055783300031777SoilDIAQALAAITAAYPEADRIRCYEYTIDDEFAREVAPLLRIGEKWMPAA
Ga0318508_104091513300031780SoilPAAYPEADRIRCYEYTIDDEFAREVAPLLRIGEKWMPAA
Ga0318548_1065210823300031793SoilTLAEALAAITAAYPKADRIRCYEYSVDNEFPVEVTPLLRSGEKWLPDA
Ga0318557_1025633333300031795SoilALAAITAAYPKADRIRCYEYSVDNEFPVEVTPLLRSGEKWLPDA
Ga0318568_1057319323300031819SoilREALAAISAACPEADRIRCYEYSVDNEFPVEVAPLMRSGTNWLPGP
Ga0318567_1068693913300031821SoilITAAYPEAHRIRCYEYSVDDEFARAVAPLVRSGEKWVSDA
Ga0310892_1051561913300031858SoilAIGSAFPEIDRVRCYEYTVDNEFPVEVPPLVRSGDKWRPAG
Ga0306919_1020006013300031879SoilAITAAYPEADRIGCYEYSVDDEFAREVAPLVRSGEKWLPAGDPSC
Ga0306919_1028544233300031879SoilDTLTEALAAIAAAYPEADRIRCYEYTVDDEFAREVRPLVRSGEKWMSGA
Ga0306919_1065157123300031879SoilALAAITAGYPDANRIRCYEYTVDDEFAREVGPLVRSGEKWVPDV
Ga0306925_1015513713300031890SoilAAYPEADRIRCYEYTVDNEFPVEVAPLLRSGEKWRPGA
Ga0318551_1000789263300031896SoilAQALAAIPAAYPEADRIRCYEYTIDDEFAREVAPLLRIGEKWMPAA
Ga0318551_1010460513300031896SoilALEAITAAYPEADRIPCYEYTVDDEFAREVAPLVRSGKNWVSSA
Ga0318551_1071282513300031896SoilYPKADRIRCYEYSVDNEFPVEVTPLLRSGEKWLPDA
Ga0306921_1236378723300031912SoilAAITAAYPEADRIGCYEYTVDDEFAREVAPLVRSGKNWMPVV
Ga0310912_1067561013300031941SoilDTLTDALAAITAAYPKADRIRCYEYSVDNEFPVEVTPLLRSGEKWLPDA
Ga0310913_1101446613300031945SoilTAAYPEVDRIRCYEYTVDDEFAREVAPLVRSGKNWMPVA
Ga0310910_1012800813300031946SoilYPEAQRIRCYEYTVDDEFAREVAPLVRSGENWLPGA
Ga0310910_1057381613300031946SoilAYPKADHIRCYEYSVDDEFAREVAPLVRSGEKWASGV
Ga0310909_1165036013300031947SoilLAAITAGYPDANRIRCYEYTVDDEFAREVGPLVRSGEKWVPDV
Ga0306926_1057875323300031954SoilAAYSEARRIRCYEYSVDDEFAREVAPLVRSGENWLPSA
Ga0307479_1164414413300031962Hardwood Forest SoilPEADRIRCYEYSVDNEFPVEVAPLLRSGEKWLPGG
Ga0318569_1032646613300032010SoilEALEAITAAYPEADRIPCYEYTVDDEFAREVAPLVRSGKNWVSSA
Ga0318507_1022590713300032025SoilPEADRIRCYEYSVDNEFPVEVAPLMRSGTNWLPGP
Ga0318532_1018106523300032051SoilTLAEALAAITAAYPEAQRIRCYEYTVDDEFAREVAPLVRSGENWLPGA
Ga0318506_1033046513300032052SoilLADALAAITAAYPEAHRIRCYEYSVDDEFARAVAPLVRSGENWVSGA
Ga0318533_1008940823300032059SoilAISAACPEADRIRCYEYSVDNEFPVEVAPLMRSGTNWLPGP
Ga0318514_1055287723300032066SoilLADALAAITAAYPEAHRIRCYEYSVDDEFARAVAPLVRSGEKWVSDA
Ga0318553_1031852533300032068SoilTAAYPKADRIRCYEYSVDNEFPVEVTPLLRSGEKWLPDA
Ga0318518_1069023723300032090SoilTGDFDTLVEALEAITAAYPEADRIPCYEYTVDDEFAREVAPLVRSGKNWVSSA
Ga0318577_1005625013300032091SoilPEAHRIRCYEYSVDDEFARAVAPLVRSGEKWVSDA
Ga0318540_1005343013300032094SoilLADALAAITAAYPEADRIRCYEYSVDDEFARAVAPLVRSGENWVSGA
Ga0318540_1007694133300032094SoilPEADRIPCYEYTVDDEFAREVAPLVRSGKNWVSSA
Ga0307470_1178120613300032174Hardwood Forest SoilAAITAAYPEADRIRCYEYSVDNEFPVEVAPLLRSGEKWLPGA


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