Metagenome / Metatranscriptome Family F080218

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F080218
Family Type	Metagenome / Metatranscriptome
Number of Sequences	115
Average Sequence Length	68 residues
Representative Sequence	MKSKRRGTPLAAEDLITLAQKLARDAERHAILSASLASQADRLMVAGLRLLEPPRPSPTKSAPSRL
Number of Associated Samples	85
Number of Associated Scaffolds	115

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	17.70 %
% of genes near scaffold ends (potentially truncated)	26.09 %
% of genes from short scaffolds (< 2000 bps)	83.48 %
Associated GOLD sequencing projects	72
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.54

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (98.261 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere (9.565 % of family members)
Environment Ontology (ENVO)	Unclassified (45.217 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (68.696 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 42.55% β-sheet: 0.00% Coil/Unstructured: 57.45%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.54
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.54
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 115 Family Scaffolds
PF05977	MFS_3	18.26
PF00753	Lactamase_B	11.30
PF12704	MacB_PCD	0.87
PF01957	NfeD	0.87
PF13313	DUF4082	0.87

COG ID	Name	Functional Category	% Frequency in 115 Family Scaffolds
COG2814	Predicted arabinose efflux permease AraJ, MFS family	Carbohydrate transport and metabolism [G]	18.26

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	98.26 %
Unclassified	root	N/A	1.74 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	98.26 %
Unclassified	root	N/A	1.74 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	98.26 %
Unclassified	root	N/A	1.74 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	87.83 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.74 %
Unclassified	root	N/A	1.74 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	34.78 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	1.74 %
Unclassified	root	N/A	1.74 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.87 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	34.78 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	1.74 %
Unclassified	root	N/A	1.74 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.87 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	34.78 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1.74 %
Unclassified	root	N/A	1.74 %
unclassified Hyphomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales	0.87 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	34.78 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1.74 %
Unclassified	root	N/A	1.74 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.87 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2067725003\|GPWSG_F5G3JLY01EUQPE	All Organisms → cellular organisms → Bacteria → Acidobacteria	511	Open in IMG/M
3300000891\|JGI10214J12806_11338764	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1075	Open in IMG/M
3300000956\|JGI10216J12902_117182821	All Organisms → cellular organisms → Bacteria → Acidobacteria	602	Open in IMG/M
3300002568\|C688J35102_119766938	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	769	Open in IMG/M
3300003267\|soilL1_10153017	All Organisms → cellular organisms → Bacteria → Acidobacteria	1818	Open in IMG/M
3300004153\|Ga0063455_101344523	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	547	Open in IMG/M
3300004156\|Ga0062589_100231607	All Organisms → cellular organisms → Bacteria	1366	Open in IMG/M
3300004156\|Ga0062589_102778622	All Organisms → cellular organisms → Bacteria → Acidobacteria	510	Open in IMG/M
3300004157\|Ga0062590_102717786	All Organisms → cellular organisms → Bacteria → Acidobacteria	528	Open in IMG/M
3300004157\|Ga0062590_102906226	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	513	Open in IMG/M
3300004463\|Ga0063356_100203981	All Organisms → cellular organisms → Bacteria	2336	Open in IMG/M
3300004463\|Ga0063356_103028448	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	724	Open in IMG/M
3300004463\|Ga0063356_104243953	All Organisms → cellular organisms → Bacteria → Acidobacteria	617	Open in IMG/M
3300004480\|Ga0062592_100955744	All Organisms → cellular organisms → Bacteria → Acidobacteria	778	Open in IMG/M
3300004643\|Ga0062591_101799516	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	625	Open in IMG/M
3300005093\|Ga0062594_100419884	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1091	Open in IMG/M
3300005093\|Ga0062594_100526952	All Organisms → cellular organisms → Bacteria	1009	Open in IMG/M
3300005293\|Ga0065715_10034088	All Organisms → cellular organisms → Bacteria → Acidobacteria	1444	Open in IMG/M
3300005328\|Ga0070676_10038643	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2757	Open in IMG/M
3300005328\|Ga0070676_10215768	All Organisms → cellular organisms → Bacteria → Acidobacteria	1265	Open in IMG/M
3300005336\|Ga0070680_100831365	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	796	Open in IMG/M
3300005340\|Ga0070689_100595049	All Organisms → cellular organisms → Bacteria → Acidobacteria	957	Open in IMG/M
3300005345\|Ga0070692_11211903	All Organisms → cellular organisms → Bacteria → Acidobacteria	538	Open in IMG/M
3300005347\|Ga0070668_100071091	All Organisms → cellular organisms → Bacteria	2710	Open in IMG/M
3300005353\|Ga0070669_100934903	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	742	Open in IMG/M
3300005354\|Ga0070675_102025636	All Organisms → cellular organisms → Bacteria → Acidobacteria	531	Open in IMG/M
3300005364\|Ga0070673_100305130	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1402	Open in IMG/M
3300005364\|Ga0070673_101939282	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	559	Open in IMG/M
3300005438\|Ga0070701_10688084	All Organisms → cellular organisms → Bacteria → Acidobacteria	687	Open in IMG/M
3300005440\|Ga0070705_101201674	All Organisms → cellular organisms → Bacteria	625	Open in IMG/M
3300005444\|Ga0070694_100122994	All Organisms → cellular organisms → Bacteria → Acidobacteria	1864	Open in IMG/M
3300005457\|Ga0070662_100561719	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	957	Open in IMG/M
3300005543\|Ga0070672_101211186	All Organisms → cellular organisms → Bacteria → Acidobacteria	673	Open in IMG/M
3300005545\|Ga0070695_100475600	All Organisms → cellular organisms → Bacteria → Acidobacteria	962	Open in IMG/M
3300005546\|Ga0070696_100143402	All Organisms → cellular organisms → Bacteria	1748	Open in IMG/M
3300005546\|Ga0070696_101115298	All Organisms → cellular organisms → Bacteria → Acidobacteria	664	Open in IMG/M
3300005548\|Ga0070665_100674083	All Organisms → cellular organisms → Bacteria → Acidobacteria	1047	Open in IMG/M
3300005549\|Ga0070704_102215627	All Organisms → cellular organisms → Bacteria → Acidobacteria	511	Open in IMG/M
3300005578\|Ga0068854_101420382	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	628	Open in IMG/M
3300005616\|Ga0068852_101101962	All Organisms → cellular organisms → Bacteria → Acidobacteria	814	Open in IMG/M
3300005718\|Ga0068866_10605700	All Organisms → cellular organisms → Bacteria → Proteobacteria	740	Open in IMG/M
3300005719\|Ga0068861_101436771	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	675	Open in IMG/M
3300005842\|Ga0068858_100588314	All Organisms → cellular organisms → Bacteria → Acidobacteria	1079	Open in IMG/M
3300005844\|Ga0068862_100019184	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	5703	Open in IMG/M
3300006196\|Ga0075422_10140658	All Organisms → cellular organisms → Bacteria → Acidobacteria	958	Open in IMG/M
3300006237\|Ga0097621_101029098	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	771	Open in IMG/M
3300006845\|Ga0075421_100059563	All Organisms → cellular organisms → Bacteria	4828	Open in IMG/M
3300007255\|Ga0099791_10154667	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1072	Open in IMG/M
3300009093\|Ga0105240_10384560	All Organisms → cellular organisms → Bacteria → Acidobacteria	1584	Open in IMG/M
3300009094\|Ga0111539_10152300	All Organisms → cellular organisms → Bacteria → Acidobacteria	2706	Open in IMG/M
3300009174\|Ga0105241_10626469	All Organisms → cellular organisms → Bacteria → Acidobacteria	974	Open in IMG/M
3300009176\|Ga0105242_11080343	All Organisms → cellular organisms → Bacteria → Acidobacteria	815	Open in IMG/M
3300009176\|Ga0105242_12686268	All Organisms → cellular organisms → Bacteria → Acidobacteria	548	Open in IMG/M
3300009177\|Ga0105248_10352996	All Organisms → cellular organisms → Bacteria → Acidobacteria	1656	Open in IMG/M
3300009553\|Ga0105249_10451911	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1324	Open in IMG/M
3300009553\|Ga0105249_12955870	All Organisms → cellular organisms → Bacteria → Acidobacteria	546	Open in IMG/M
3300010399\|Ga0134127_10472377	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1259	Open in IMG/M
3300010399\|Ga0134127_11132005	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	847	Open in IMG/M
3300010399\|Ga0134127_12028377	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	653	Open in IMG/M
3300010400\|Ga0134122_10005246	All Organisms → cellular organisms → Bacteria	9597	Open in IMG/M
3300010400\|Ga0134122_11581984	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	678	Open in IMG/M
3300010400\|Ga0134122_11604621	All Organisms → cellular organisms → Bacteria → Acidobacteria	675	Open in IMG/M
3300010400\|Ga0134122_12985158	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	527	Open in IMG/M
3300010403\|Ga0134123_12796122	All Organisms → cellular organisms → Bacteria → Acidobacteria	556	Open in IMG/M
3300011332\|Ga0126317_10782580	All Organisms → cellular organisms → Bacteria → Acidobacteria	706	Open in IMG/M
3300012208\|Ga0137376_10314806	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1358	Open in IMG/M
3300012208\|Ga0137376_10390317	All Organisms → cellular organisms → Bacteria → Acidobacteria	1209	Open in IMG/M
3300012212\|Ga0150985_111624141	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	926	Open in IMG/M
3300012212\|Ga0150985_118780368	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	802	Open in IMG/M
3300012469\|Ga0150984_112205491	All Organisms → cellular organisms → Bacteria → Acidobacteria	641	Open in IMG/M
3300017792\|Ga0163161_10676700	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	857	Open in IMG/M
3300018000\|Ga0184604_10007320	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2170	Open in IMG/M
3300018052\|Ga0184638_1094480	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1097	Open in IMG/M
3300018052\|Ga0184638_1126352	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	933	Open in IMG/M
3300018073\|Ga0184624_10536393	All Organisms → cellular organisms → Bacteria → Acidobacteria	506	Open in IMG/M
3300018469\|Ga0190270_10599402	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1073	Open in IMG/M
3300018469\|Ga0190270_10630052	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1051	Open in IMG/M
3300018476\|Ga0190274_10029463	All Organisms → cellular organisms → Bacteria	3726	Open in IMG/M
3300018476\|Ga0190274_10261048	All Organisms → cellular organisms → Bacteria → Acidobacteria	1579	Open in IMG/M
3300021307\|Ga0179585_1161433	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	529	Open in IMG/M
3300025315\|Ga0207697_10055743	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1639	Open in IMG/M
3300025885\|Ga0207653_10192890	All Organisms → cellular organisms → Bacteria → Acidobacteria	766	Open in IMG/M
3300025907\|Ga0207645_10009541	All Organisms → cellular organisms → Bacteria	6706	Open in IMG/M
3300025907\|Ga0207645_10028451	All Organisms → cellular organisms → Bacteria → Acidobacteria	3607	Open in IMG/M
3300025908\|Ga0207643_10549219	All Organisms → cellular organisms → Bacteria → Acidobacteria	741	Open in IMG/M
3300025913\|Ga0207695_11000152	All Organisms → cellular organisms → Bacteria → Acidobacteria	716	Open in IMG/M
3300025917\|Ga0207660_11454208	All Organisms → cellular organisms → Bacteria → Acidobacteria	554	Open in IMG/M
3300025923\|Ga0207681_10506924	All Organisms → cellular organisms → Bacteria → Acidobacteria	989	Open in IMG/M
3300025923\|Ga0207681_11777288	All Organisms → cellular organisms → Bacteria → Acidobacteria	514	Open in IMG/M
3300025925\|Ga0207650_11576894	All Organisms → cellular organisms → Bacteria → Acidobacteria	557	Open in IMG/M
3300025927\|Ga0207687_10170691	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1677	Open in IMG/M
3300025933\|Ga0207706_10323433	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1342	Open in IMG/M
3300025936\|Ga0207670_10533423	All Organisms → cellular organisms → Bacteria → Acidobacteria	957	Open in IMG/M
3300025940\|Ga0207691_10098916	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2605	Open in IMG/M
3300025941\|Ga0207711_10755048	All Organisms → cellular organisms → Bacteria → Acidobacteria	907	Open in IMG/M
3300025942\|Ga0207689_11396819	All Organisms → cellular organisms → Bacteria → Acidobacteria	587	Open in IMG/M
3300025960\|Ga0207651_10095120	All Organisms → cellular organisms → Bacteria → Acidobacteria	2193	Open in IMG/M
3300025972\|Ga0207668_10076292	All Organisms → cellular organisms → Bacteria → Acidobacteria	2413	Open in IMG/M
3300025972\|Ga0207668_11385187	All Organisms → cellular organisms → Bacteria → Acidobacteria	634	Open in IMG/M
3300026035\|Ga0207703_11469583	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	656	Open in IMG/M
3300026118\|Ga0207675_101025321	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	844	Open in IMG/M
3300026118\|Ga0207675_102621617	All Organisms → cellular organisms → Bacteria → Acidobacteria	513	Open in IMG/M
3300028380\|Ga0268265_10055921	All Organisms → cellular organisms → Bacteria → Acidobacteria	3000	Open in IMG/M
3300028380\|Ga0268265_10120853	All Organisms → cellular organisms → Bacteria → Acidobacteria	2157	Open in IMG/M
3300028380\|Ga0268265_10735934	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	956	Open in IMG/M
3300028718\|Ga0307307_10132528	All Organisms → cellular organisms → Bacteria → Acidobacteria	772	Open in IMG/M
3300028828\|Ga0307312_10070886	All Organisms → cellular organisms → Bacteria → Acidobacteria	2115	Open in IMG/M
3300028881\|Ga0307277_10296767	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	716	Open in IMG/M
3300028885\|Ga0307304_10332304	All Organisms → cellular organisms → Bacteria → Acidobacteria	676	Open in IMG/M
3300031740\|Ga0307468_100689377	All Organisms → cellular organisms → Bacteria → Acidobacteria	852	Open in IMG/M
3300031740\|Ga0307468_101004063	All Organisms → cellular organisms → Bacteria → Acidobacteria	734	Open in IMG/M
3300032012\|Ga0310902_10242592	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1081	Open in IMG/M
3300032012\|Ga0310902_10587297	All Organisms → cellular organisms → Bacteria → Acidobacteria	738	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	50.43%
Environmental	Environmental	49.57%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	50.43%
Terrestrial	Environmental → Terrestrial	45.22%
Aquatic	Environmental → Aquatic	4.35%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	45.22%
Rhizosphere	Host-Associated → Plants → Rhizosphere	29.57%
Rhizoplane	Host-Associated → Plants → Rhizoplane	20.00%
Sediment	Environmental → Aquatic → Sediment	3.48%
Freshwater	Environmental → Aquatic → Freshwater	0.87%
Roots	Host-Associated → Plants → Roots	0.87%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	32.17%
Soil	Host-Associated → Plants → Rhizosphere → Soil	18.26%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	16.52%
Loam	Environmental → Terrestrial → Soil → Loam	13.04%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	11.30%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.48%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	3.48%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.87%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.87%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	18.26%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	17.39%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	16.52%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	11.30%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	11.30%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	7.83%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.48%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	3.48%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.61%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	2.61%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.74%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.74%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.87%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.87%

Habitat	Taxonomy	Distribution
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	9.57%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	7.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	7.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	6.96%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	6.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	6.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	6.09%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	3.48%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	3.48%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	3.48%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.61%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.61%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	2.61%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	2.61%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	2.61%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.61%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.61%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	2.61%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.74%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.74%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.74%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	1.74%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.74%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.74%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.87%
Sugarcane Root And Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil	0.87%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	0.87%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.87%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.87%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.87%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.87%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2067725003	Soil microbial communities from Great Prairies - Wisconsin, Switchgrass soil	Environmental	Open in IMG/M
3300000891	Soil microbial communities from Great Prairies - Wisconsin, Continuous corn soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300003267	Sugarcane bulk soil Sample L1	Environmental	Open in IMG/M
3300004153	Grasslands soil microbial communities from Hopland, California, USA (version 2)	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005293	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1	Host-Associated	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005336	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG	Environmental	Open in IMG/M
3300005340	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG	Environmental	Open in IMG/M
3300005345	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG	Environmental	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005353	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG	Host-Associated	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated	Open in IMG/M
3300005438	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG	Environmental	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005457	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG	Host-Associated	Open in IMG/M
3300005543	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG	Host-Associated	Open in IMG/M
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005578	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2	Host-Associated	Open in IMG/M
3300005616	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2	Host-Associated	Open in IMG/M
3300005718	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2	Host-Associated	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated	Open in IMG/M
3300006196	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1	Host-Associated	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300009093	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG	Host-Associated	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300011332	Soil microbial communities from California, USA to study soil gas exchange rates - SR-CA-SC2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300018000	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_coex	Environmental	Open in IMG/M
3300018052	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b2	Environmental	Open in IMG/M
3300018073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_b1	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300021307	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_06_16RNAfungal (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300025315	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Host-Associated	Open in IMG/M
3300025885	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025907	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025908	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025913	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025917	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025923	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025925	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025933	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025936	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)	Environmental	Open in IMG/M
3300025940	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025941	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025942	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025960	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025972	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026035	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028718	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_194	Environmental	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300028881	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_116	Environmental	Open in IMG/M
3300028885	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_185	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300032012	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D3	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
GPWSG_01698550	2067725003	Soil	PMKSKPLATPLAGQDLISLAQKLARDAERHAILSASLASQADRLMDEGLRLLEPPRPVTSKVARPSL
JGI10214J12806_113387642	3300000891	Soil	MTSKSLGTPLAGQDLITLAQKLARDAERHAILSASLASQADRLMVAGLRLLEPPR
JGI10216J12902_1171828212	3300000956	Soil	MFVPMPKSKRRSTPLEGQELITLAQKLARDAERHAILSASLASQADRLMVAGLRLLDPPRPAASKDAQRPSL*
C688J35102_1197669381	3300002568	Soil	MQKSRRRRTPLQGQDLITLAQKLARDAERHAILSASLASQADRLMVAGLRLLDVPHVASAKDAPR
soilL1_101530172	3300003267	Sugarcane Root And Bulk Soil	MKIKRRGTPLAAEDLIALAQKLARDAERHAILSASLASQADRLMVAGLERLEPPRRAPAKRASSSL*
Ga0063455_1013445231	3300004153	Soil	MQKSRRRRTPLQGQDLITLAQKLARDAERHAILSASLASQADRLMVAGLRLLDVPHVASAKDAPRPRVS*
Ga0062589_1002316072	3300004156	Soil	MEKKRRGTPLAAEDLITLAQKLARDAERHAILSASLASQADRLMVAGLQRLEPPRPSPAKTATRSL*
Ga0062589_1027786221	3300004156	Soil	MKSKALGTPLAGQDLITLAQKLARDAERHAILSASLASQADRLMVAGLRLLEPPRPATSKGASPSL*
Ga0062590_1027177862	3300004157	Soil	LATPLAGQDLISLAQKLARDAERHAILSASLASQADRLMDEGLRLLEPPRPVTSKVARPSL*
Ga0062590_1029062261	3300004157	Soil	MKSKALGTPLAGQDLITLAQKLARDAERHAILSASLASQADRLMVAGLRLLEPPRPATSKGASPSL
Ga0063356_1002039812	3300004463	Arabidopsis Thaliana Rhizosphere	MIGPMKSKRRGTPLAAEDLITLAQKLARDAERHAILSASLASQADRLMVAGLRLLEPPRPSPAKLATPRL*
Ga0063356_1030284482	3300004463	Arabidopsis Thaliana Rhizosphere	MEKKRRGTPLAAEDLITLAQKLARDAERHAILSASLASQADRLMVAGLQRLEPPRSSPAKTATRSL*
Ga0063356_1042439532	3300004463	Arabidopsis Thaliana Rhizosphere	MKSKPFATPLAGQDLISLAQKLARDAERHAILSASLASQADRLMDEGLRLLEPPRPAASKGARPSL*
Ga0062592_1009557441	3300004480	Soil	MLMDPRIMKMGPMKSQRRGTPLAAEDLITLAQKLARDAERHAILSASLASQADRLMVAGLRLLEPPRPTPTKSASRM*
Ga0062591_1017995161	3300004643	Soil	GQDLISLAQKLARDAERHAILSASLASQADRLMDEGLRLLEPPRPVTSKVARPSL*
Ga0062594_1004198843	3300005093	Soil	MMMGPMKTKGRGTPLAAEDLIALAQKLARDAERHAILSASLASQADRLMVAGLERLEPPRRSPAKRASSSL*
Ga0062594_1005269521	3300005093	Soil	MKMGPMKSKRRGTPLAAEDLITLAQKLARDAERHAILSASLASQADRLMVAGLRLLEPPRPSPTKSAPSRL*
Ga0065715_100340883	3300005293	Miscanthus Rhizosphere	MKFKRRSTPLKGQDLIGLAQKLARDAERHAILSASLASQADRLMVAGLRLLEPPPADHRVGPGH*
Ga0070676_100386433	3300005328	Miscanthus Rhizosphere	MMMGPMKTKGRGTPLAAEDLIALAQKLARDAERHAILSASLASQADRLMVAGLQRLEPPRRSPAKRASSSL*
Ga0070676_102157682	3300005328	Miscanthus Rhizosphere	LWTPNIMNMGPMKSKRRGTPLAAEDLITLAQKLARDAERHAILSASLASQADRLMVAGLRLLEPPRPSPTKSAPSRL*
Ga0070680_1008313652	3300005336	Corn Rhizosphere	MKSKPFATPLAGQDRVSLAQKLARDAERHAILSASLASQADRLMDEGLRLLEPPRP
Ga0070689_1005950492	3300005340	Switchgrass Rhizosphere	MKLQSQAALQGQDLITLAQKLARDAERHAILSASLASQADRLMVAGLRLLDPPRPAPTEGARPSL*
Ga0070692_112119032	3300005345	Corn, Switchgrass And Miscanthus Rhizosphere	MKSKPFATPLAGQDLISLAQKLARDAERHAILSASLASQADRLMDEGLRLLEPLRPAASKGARPSL*
Ga0070668_1000710913	3300005347	Switchgrass Rhizosphere	MKMGPMKSRRRGSPLAAEDLITLAQKLARDAERHAILSASLASQADRLMVAGLRLLEPPRPSPTKSAPSRL*
Ga0070669_1009349032	3300005353	Switchgrass Rhizosphere	MLVDPRIMKMGPMKPKRRGMPLAAEDLITLAQKLARDAERHAILSASLASQADRLMVAGLRLLEPPRPSPAKSAPSRM*
Ga0070675_1020256361	3300005354	Miscanthus Rhizosphere	MLVDPRIMKMGPMKSKRRGTPLAAEDLITLAQKLARDAERHAILSASLASQADRLMVAGLRLLEPPRPTPTKSARL*
Ga0070673_1003051301	3300005364	Switchgrass Rhizosphere	RGCYLSGACRMMMGPMKTKGRGTPLAAEDLIALAQKLARDAERHAILSASLASQADRLMVAGLQRLEPPRRSPAKRASSSL*
Ga0070673_1019392822	3300005364	Switchgrass Rhizosphere	VGDHLTLNMKLKRRSTPLKGEDLIGLAQKLARDAERHAILSASLASQADRLMVAGLRLLEPPPTDRGVRAS*
Ga0070701_106880841	3300005438	Corn, Switchgrass And Miscanthus Rhizosphere	GPMKTKGRGTPLAAEDLIALAQKLARDAERHAILSASLASQADRLMVAGLERLEPPRRSPAKRASSSL*
Ga0070705_1012016742	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	MMASKMKLKRRVAPLQGQDLISLAQKLARDAERHAILSASLASQADRLMVAGLRLLEPPRPSTPKGTSPNP*
Ga0070694_1001229942	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	MMMGPMKITGRGTPLAPEDLIALAQKLARDAERHAILSASLASQADRLMVAGLERLHTPRPPAAKRTTPSL*
Ga0070662_1005617191	3300005457	Corn Rhizosphere	MKSKPLATPLAGQDLISLAQKLARDAERHAILSASLASQADRLMDEGLRLLEPPRPVTSKVARPSL*
Ga0070672_1012111861	3300005543	Miscanthus Rhizosphere	MKMGPMKSKRRGTPLAAEDLITLAQKLARDAERHAILSASLASQADRLMVAGLRLLEPPRPTPTKSASRM*
Ga0070695_1004756002	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	MMVGPMKTKGRGTPLAPEDLIALAQKLARDAERHAILSASLASQADRLMVAGLERLHTPRPPAAKRTTPSL*
Ga0070696_1001434022	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	MKSKRVAPLQGQELISLAQKLARDAERHAILSASLASQADRLMVAGLRLLEPPRPATSNGASPSL*
Ga0070696_1011152981	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	LARSCAAPMKSKPFATPLAGQDLISLAQKLARDAERHAILSASLASQADRLMDEGLRLLEPPRPATSKGARPSL*
Ga0070665_1006740832	3300005548	Switchgrass Rhizosphere	MSILMMKSKRGRTPLQGQDLITLAQKLARDAERHAILSASLASQADRLMAAGLSLLDPPRPVAATDARRPRL*
Ga0070704_1022156272	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	MKFKRRSTPLKGQDLIGLAQKLARDAERHAILSASLASQADRLMVAGLRLLEPPPADHRVRPGH*
Ga0068854_1014203821	3300005578	Corn Rhizosphere	MKSKPLATPLAGQDLISLAQKLARDAERHAILSASLASQADRLMDEGLRLLEPPRPVTSKGARPSL*
Ga0068852_1011019621	3300005616	Corn Rhizosphere	MQKSRRRRTPLQGQDLITLAQKLARDAERHAILSASLASQADRLMVAGLRLLDVPHGAPAKDAPRPRVS*
Ga0068866_106057002	3300005718	Miscanthus Rhizosphere	MLVDPRIMKMGPMKPKRRGMPLAAEDLITLAQKLARDAERHAILSASLASQADRLMVAGLRLLEPPRPSPAKTAPSRL*
Ga0068861_1014367711	3300005719	Switchgrass Rhizosphere	MLVDPRIMKMGPMKSTRRGTPLAAEDLITLAQKLARDAERHAILSASLASQADRLMVAGLRLLEPPPPRKAPTKSAPI
Ga0068858_1005883142	3300005842	Switchgrass Rhizosphere	MKSIRRSTPLKGQDLIGLAQKLARDAERHAILSASLASQADRLMVAGLRMLEQPPPDHRARPSR*
Ga0068862_1000191845	3300005844	Switchgrass Rhizosphere	MLVDPRIMKMGPMKSTRRGTPLAAEDLITLAQKLARDAERHAILSASLASQADRLMVAGLRLLEPPPPRKAPTKSAPIHPS*
Ga0075422_101406582	3300006196	Populus Rhizosphere	LLITIACLMMMNPMKTKGRGTPLAPEDLIALAQKLARDAERHAILSASLASQADRLMVAGLERLQPPRPSPAKRPSSSL*
Ga0097621_1010290982	3300006237	Miscanthus Rhizosphere	MKFKLRAAPLQAQDLITLAQQLARDAERHAILSASLASQADRLMVAGLRLLDPPCPSPTDGARPSL*
Ga0075421_1000595633	3300006845	Populus Rhizosphere	MLVDPHIMKMAPMKSKPLGTPLAAEDLITLAQKLARDAERHAILSASLASQADRLMVAGLRLLEPPRPTPAKSARSRM*
Ga0099791_101546671	3300007255	Vadose Zone Soil	MKVKCRSTPLKGQDLIGLAQKLARDAERHEILSASLASQADRLMVAGLRLLEPPPPD
Ga0105240_103845601	3300009093	Corn Rhizosphere	MKVKRRSTPLKGQDLIGLAQKLARDAERHAILSASLASQADRLMVAGLRLLEPPPPDRRVRPGN*
Ga0111539_101523002	3300009094	Populus Rhizosphere	MMMNPMKTKGRGTPLAPEDLIALAQKLARDAERHAILSASLASQADRLMVAGLERLQPPRPSPAKRPSSSL*
Ga0105241_106264692	3300009174	Corn Rhizosphere	MKSKPFATPLAGQDLISLAQKLARDAERHAILSASLASQADRLMDEGLRLLEPPRPATSKGARPSL*
Ga0105242_110803432	3300009176	Miscanthus Rhizosphere	MNTKPLQTPMAGQDLITLAQKLARDAERHAILPASLASQADRLMVAGLRLLEPPHPAVTKGTSPSL*
Ga0105242_126862681	3300009176	Miscanthus Rhizosphere	TPLKGQDLIGLAQKLARDAERHAILSASLASQADRLMVAGLRMLEQPPPDHRARPSR*
Ga0105248_103529963	3300009177	Switchgrass Rhizosphere	MKLKSQAALQGQDLITLAQKLARDAERHAILSASLASQADRLMVAGLRLLDPPRPSPAEGARPSL*
Ga0105249_104519111	3300009553	Switchgrass Rhizosphere	MKMGPMKSKRRGTPLAAEDLITLAQKLARDAERHAILSASLASQADRLMVAGLRLLEPPPPRKAPTKSAPIHPS*
Ga0105249_129558702	3300009553	Switchgrass Rhizosphere	MLVDPRIMKMGPMKSTRPGTPLAAEDLITLAQKLARDAERHAILSASLASQADRLMVAGLRLLEPPRPSPAKTAPSRL*
Ga0134127_104723773	3300010399	Terrestrial Soil	MKSTRRGTPLAAEDLITLAQKLARDAERHAILSASLASQADRLMVAGLRLLEPPPPRKAPTKSAPIHPS*
Ga0134127_111320052	3300010399	Terrestrial Soil	MKPKALGTPLAGQDLITLAQKLARDAERHAILSASLASQADRLMVAGLRLLEPPRPAASKGARPSL*
Ga0134127_120283772	3300010399	Terrestrial Soil	MKSKPFATPLAGQDLISLAQKLARDAERHAILSASLASQADRLMDEGLRLLEPPRPVTSKVARPSL*
Ga0134122_100052465	3300010400	Terrestrial Soil	MKTKGRGTPLAAEDLIALAQKLARDAERHAILSASLASQADRLMVAGLERLEPPRRSPAKRASSSL*
Ga0134122_115819843	3300010400	Terrestrial Soil	MGPMKTKRGGTPLYAEDLITLAQKLARDAERHAILSASLASQADRLMIAGLQQLEQPRRSPAKGATPSL*
Ga0134122_116046211	3300010400	Terrestrial Soil	HTMEKKRRGTPLAAEDFITLAQKLARDAERHAILSASLASQADRLMVAGLQRLEPPRPSPAKTATRSL*
Ga0134122_129851581	3300010400	Terrestrial Soil	MNTKPLATPMAGQDLITLAQKLARDAERHAILSASLASQADRLMVAGLRLLEPPRPAVSKGTSPSL*
Ga0134123_127961221	3300010403	Terrestrial Soil	MKSKRRGTPLAAEDLITLAQKLARDAERHAILSASLASQADRLMVAGLRLLEPPRPSPTKSAPSRL*
Ga0126317_107825801	3300011332	Soil	MGPMKSQRRGTPLAAEDLITLAQKLARDAERHAILSASLASQADRLMVAGLRLLEPPRAAPTKAARL*
Ga0137376_103148062	3300012208	Vadose Zone Soil	MKVKRRSTPLKGQDLIGLAQKLARDAERHAILSASLASQADRLMVAGLRLLEPPPPDHRVRPSH*
Ga0137376_103903171	3300012208	Vadose Zone Soil	MKVKRRSTPLKGQDLIGLAQKLARDAERHAILSASLASQADRLMVAGLRLLEPPPPDHRVRPSQ*
Ga0150985_1059904762	3300012212	Avena Fatua Rhizosphere	GKARAPLKGQDLITLAQKLARDAERHAILSASLASQADRLMLAGLELLDRPKAAPRKALRPHA*
Ga0150985_1116241411	3300012212	Avena Fatua Rhizosphere	SRRRRTPLQGQDLITLAQKLARDAERHAILSASLASQADRLMVAGLRLLDVPHVASAKDAPRPRVS*
Ga0150985_1187803682	3300012212	Avena Fatua Rhizosphere	MPLQGHDLITLAQKLARDAERHAILSASLASQADRLMVAGLRLLDVPPAPVADAQRPLV*
Ga0150984_1122054911	3300012469	Avena Fatua Rhizosphere	KSRRRRTPLQGQDLITLAQKLARDAERHAILSASLASQADRLMVAGLRLLDVPHVASAKDAPRPRVS*
Ga0163161_106767001	3300017792	Switchgrass Rhizosphere	MKSKPLATPLAGQDLISLAQKLARDAERHAILSASLASQADRLMDEGLRLLEPLRPAASKGARPSL
Ga0184604_100073203	3300018000	Groundwater Sediment	MKVKRRSTPLKGQDLIGLAQKLARDAERHAILSASLASQADRLMVAGLRLLEPPPPDHRVRPSH
Ga0184638_10944802	3300018052	Groundwater Sediment	MKSKARLAPLQGRELITLAQKLARDAERHAILSASLASQADRLMVAGLRLLEPPRPATPDGARPSL
Ga0184638_11263522	3300018052	Groundwater Sediment	MKSTARLAPLQGQELITLAQKLARDAERHAILSASLASQADRLMVAGLRLLEPPRPATPDGARPSL
Ga0184624_105363931	3300018073	Groundwater Sediment	IMKMGPMKPKRRGTPLAAEDLITLAQKLARDAERHAILSASLASQADRLMVAGLRLLEPPRPSPSKSAPSRM
Ga0190270_105994022	3300018469	Soil	MQAKRRGAPLQGQDLITLAQKLARDAERHAILSASLASQADRLMVAGLRLLEPPCPVAAKGASPSL
Ga0190270_106300522	3300018469	Soil	MNVKRRAVPLQGQDLITLAQKLARDAERHAILSASLASQADRLMVAGLRLLEPPCPATPKRATSNF
Ga0190274_100294636	3300018476	Soil	MKMGPMKSKRRGTPLAAEDLITLAQKLARDAERHAILSASLASQADRLMVAGLRLLEPPRPTPTKSAPSRM
Ga0190274_102610482	3300018476	Soil	MKSKPLAPPLAGQDLISLAQKLARDAERHAILSASLASQADRLMDEGLRLLEPPHPVTSKGARPSL
Ga0179585_11614331	3300021307	Vadose Zone Soil	KMNRSDAPLQGQELITRALELARDAERHAILSASLASQADRLLVAGLRLLDPPRPAPAPEARPHP
Ga0207697_100557432	3300025315	Corn, Switchgrass And Miscanthus Rhizosphere	MKSKRRGTPLAAEDLITLAQKLARDAERHAILSASLASQADRLMVAGLRLLEPPRPSPTKSAPSRL
Ga0207653_101928902	3300025885	Corn, Switchgrass And Miscanthus Rhizosphere	RMMMGPMKTKGRGTPLAAEDLIALAQKLARDAERHAILSASLASQADRLMVAGLERLEPPRRSPAKRASSSL
Ga0207645_100095415	3300025907	Miscanthus Rhizosphere	MMMGPMKTKGRGTPLAAEDLIALAQKLARDAERHAILSASLASQADRLMVAGLQRLEPPRRSP
Ga0207645_100284514	3300025907	Miscanthus Rhizosphere	MNMGPMKSKRRGTPLAAEDLITLAQKLARDAERHAILSASLASQADRLMVAGLRLLEPPRPSPTKSAPSRL
Ga0207643_105492192	3300025908	Miscanthus Rhizosphere	MKSTRRGTPLAAEDLITLAQKLARDAERHAILSASLASQADRLMVAGLRLLEPPPPRKAPTKSAPIHPS
Ga0207695_110001522	3300025913	Corn Rhizosphere	MKVKRRSTPLKGQDLIGLAQKLARDAERHAILSASLASQADRLMVAGLRLLEPPPPDRRVRPGN
Ga0207660_114542082	3300025917	Corn Rhizosphere	MKSKPFATPLAGQELISLAQKLARDAERHAILSASLASQADRLMDEGLRLLEPLRPAASKGARPSL
Ga0207681_105069242	3300025923	Switchgrass Rhizosphere	MKMGPMKSKRRGTPLAAEDLITLAQKLARDAERHAILSASLASQADRLMVAGLRLLEPPRPSPTKSAPSRL
Ga0207681_117772881	3300025923	Switchgrass Rhizosphere	MMMGPMKTKGRGTPLAAEDLIALAQKLARDAERHAILSASLASQADRLMVAGLERLEPPRRSPAKRASSSL
Ga0207650_115768942	3300025925	Switchgrass Rhizosphere	MLVDPRIMKMGPMKSKRRGTPLAAEDLITLAQKLARDAERHAILSASLASQADRLMVAGLRLLEPPRPSPTKSAPSRL
Ga0207687_101706912	3300025927	Miscanthus Rhizosphere	VGDHLTLNMKLKRRSTPLKGEDLIGLAQKLARDAERHAILSASLASQADRLMVAGLRLLEPPPTDRGVRAS
Ga0207706_103234333	3300025933	Corn Rhizosphere	PSCSAPMKSKPLATPLAGQDLISLAQKLARDAERHAILSASLASQADRLMDEGLRLLEPPRPVTSKVARPSL
Ga0207670_105334232	3300025936	Switchgrass Rhizosphere	MKLQSQAALQGQDLITLAQKLARDAERHAILSASLASQADRLMVAGLRLLDPPRPAPTEGARPSL
Ga0207691_100989165	3300025940	Miscanthus Rhizosphere	MKMGPMKSKRRGTPLAAEDLITLAQKLARDAERHAILSASLASQADRLMVAGLRLLEPPRPTPTKSASRM
Ga0207711_107550481	3300025941	Switchgrass Rhizosphere	MKFKLRAAPLQAQDLITLAQQLARDAERHAILSASLASQADRLMVAGLRLLDPPCPSPTDGARPSL
Ga0207689_113968192	3300025942	Miscanthus Rhizosphere	MSILMMKSKRGRTPLQGQDLITLAQKLARDAERHAILSASLASQADRLMAAGLSLLDPPRPVAATDAR
Ga0207651_100951205	3300025960	Switchgrass Rhizosphere	MMMGPMKTKGRGTPLAAEDLIALAQKLARDAERHAILSASLASQADRLMVAGLQRLEPPRRSPAKRASSSL
Ga0207668_100762923	3300025972	Switchgrass Rhizosphere	MKMGPMKSRRRGSPLAAEDLITLAQKLARDAERHAILSASLASQADRLMVAGLRLLEPPRPSPTKSAPSRL
Ga0207668_113851871	3300025972	Switchgrass Rhizosphere	PALARSCAAPMKSKPFATPLAGQDLISLAQKLARDAERHAILSASLASQADRLMDEGLRLLEPLRPAASKGARPSL
Ga0207703_114695832	3300026035	Switchgrass Rhizosphere	MKSIRRSTPLKGQDLIGLAQKLARDAERHAILSASLASQADRLMVAGLRMLEQPPPDHRARPSR
Ga0207675_1010253212	3300026118	Switchgrass Rhizosphere	MLVDPRIMKMGPMKSTRRGTPLAAEDLITLAQKLARDAERHAILSASLASQADRLMVAGLRLLEPPPPRKA
Ga0207675_1026216172	3300026118	Switchgrass Rhizosphere	MSILMMKSKRGRTPLQGQDLITLAQKLARDAERHAILSASLASQADRLMAAGLSLLDPPRPVAATDARRPRL
Ga0268265_100559214	3300028380	Switchgrass Rhizosphere	MLVDPRIMKMGPMKSTRRGTPLAAEDLITLAQKLARDAERHAILSASLASQADRLMVAGLRLLEPPPPRKAPTKSAPIHPS
Ga0268265_101208532	3300028380	Switchgrass Rhizosphere	MKSKPLATPLAGQDLISLAQKLARDAERHAILSASLASQADRLMDEGLRLLEPPRPVTSKVARPSL
Ga0268265_107359341	3300028380	Switchgrass Rhizosphere	LARSCAAPMKSKPFATPLAGQDLISLAQKLARDAERHAILSASLASQADRLMDEGLRLLEPLRPAASKGARPSL
Ga0307307_101325282	3300028718	Soil	MKSKPVAPLQGQELISLAQKLARDAERHAILSASLASQADRLMVAGLRLLEPPRPATSNGARPSL
Ga0307312_100708863	3300028828	Soil	MHPEMKLKRRVVPLQGQDLITLAQKLARDAERHAILSASLASQADRLMVAGLRLLEPQRPPTPTGTRPNP
Ga0307277_102967671	3300028881	Soil	MIMPPTMKVKRGSTPLEGRDLIGLAQKLARDAERHAILSASLASQADRLMVAGLRLLEPPPPGHRVRPSQ
Ga0307304_103323041	3300028885	Soil	MKSKPVAPLQGQELISLAQKLARDAERHAILSASLASQADRLMVAGLRLLEPARPATSNGARPSL
Ga0307468_1006893772	3300031740	Hardwood Forest Soil	MKSKPIATPLAGQDLISLAQKLARDAERHAILSASLASQADRLMVAGLRLLEPSRPATHKGASPSL
Ga0307468_1010040631	3300031740	Hardwood Forest Soil	MEKKRRGTPLAAEDLITLAQKLARDAERHAILSASLASQADRLMVAGLQRLEPPRPSPAKTATRSL
Ga0307468_1011404331	3300031740	Hardwood Forest Soil	MKVKRRTTPLKGQDLIGLAQKLARDAERHAILSASLASQADRLMIAGLRLLEPPPPDNRLRT
Ga0310902_102425921	3300032012	Soil	MKMGPMKSKRRGTPLAAEDLITLAQKLARDAERHAILSASLASQADRLMVAGLRLLEPPRPSPTK
Ga0310902_105872972	3300032012	Soil	LAAEDLITLAQKLARDAERHAILSASLASQADRLMVAGLRLLEPPPPRKAPTKSAPIHPS

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F080218

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences