Metagenome Family F080192

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F080192
Family Type	Metagenome
Number of Sequences	115
Average Sequence Length	106 residues
Representative Sequence	MTVLASAAPAKAEPAIQRSGASAAEGTWIRDPHFTFLKMGYCVRIYRCVAPDQTGDKHFTASPPKKQAGLCTPGVDSLDYCGLCQTDEPKERCTYDLK
Number of Associated Samples	93
Number of Associated Scaffolds	115

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	11.30 %
% of genes near scaffold ends (potentially truncated)	30.43 %
% of genes from short scaffolds (< 2000 bps)	79.13 %
Associated GOLD sequencing projects	68
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (76.522 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere (11.304 % of family members)
Environment Ontology (ENVO)	Unclassified (81.739 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (89.565 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 22.45% Coil/Unstructured: 77.55%
Feature Viewer

Powered by Feature Viewer

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 115 Family Scaffolds
PF13442	Cytochrome_CBB3	21.74
PF01593	Amino_oxidase	13.91
PF01042	Ribonuc_L-PSP	6.09
PF00072	Response_reg	1.74
PF03412	Peptidase_C39	1.74
PF07715	Plug	1.74
PF13414	TPR_11	0.87
PF01522	Polysacc_deac_1	0.87
PF13194	DUF4010	0.87
PF13453	zf-TFIIB	0.87
PF01019	G_glu_transpept	0.87
PF05227	CHASE3	0.87
PF13419	HAD_2	0.87
PF13517	FG-GAP_3	0.87
PF07586	HXXSHH	0.87

COG ID	Name	Functional Category	% Frequency in 115 Family Scaffolds
COG0251	Enamine deaminase RidA/Endoribonuclease Rid7C, YjgF/YER057c/UK114 family	Defense mechanisms [V]	6.09
COG0405	Gamma-glutamyltranspeptidase	Amino acid transport and metabolism [E]	0.87
COG0726	Peptidoglycan/xylan/chitin deacetylase, PgdA/NodB/CDA1 family	Cell wall/membrane/envelope biogenesis [M]	0.87

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	76.52 %
Unclassified	root	N/A	23.48 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	76.52 %
Unclassified	root	N/A	23.48 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	76.52 %
Unclassified	root	N/A	23.48 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	73.04 %
Unclassified	root	N/A	23.48 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	73.04 %
Unclassified	root	N/A	23.48 %

Name	Rank	Taxonomy	Distribution
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	27.83 %
Unclassified	root	N/A	23.48 %
Caulobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales	13.91 %
Sphingomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales	7.83 %
Micropepsales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Micropepsales	2.61 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.87 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	27.83 %
Unclassified	root	N/A	23.48 %
Caulobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae	13.91 %
Sphingomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	7.83 %
Micropepsaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Micropepsales → Micropepsaceae	2.61 %
Beijerinckiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae	0.87 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	27.83 %
Unclassified	root	N/A	23.48 %
Caulobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Caulobacter	8.70 %
Sphingobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingobium	6.09 %
Rhizomicrobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Micropepsales → Micropepsaceae → Rhizomicrobium	2.61 %
Methylocella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylocella	0.87 %
Sphingomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	0.87 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	27.83 %
Unclassified	root	N/A	23.48 %
Sphingobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingobium	6.09 %
Caulobacter vibrioides	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Caulobacter → Caulobacter vibrioides	3.48 %
unclassified Rhizomicrobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Micropepsales → Micropepsaceae → Rhizomicrobium → unclassified Rhizomicrobium	2.61 %
Methylocella tundrae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylocella → Methylocella tundrae	0.87 %
Sphingomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	0.87 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	27.83 %
Unclassified	root	N/A	23.48 %
Sphingobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingobium	6.09 %
Caulobacter vibrioides	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Caulobacter → Caulobacter vibrioides	3.48 %
Rhizomicrobium sp. SCGC AG-212-E05	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Micropepsales → Micropepsaceae → Rhizomicrobium → unclassified Rhizomicrobium → Rhizomicrobium sp. SCGC AG-212-E05	2.61 %
Methylocella tundrae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylocella → Methylocella tundrae	0.87 %
Sphingomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	0.87 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300005328\|Ga0070676_11185777	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	580	Open in IMG/M
3300005329\|Ga0070683_102214667	Not Available	528	Open in IMG/M
3300005330\|Ga0070690_100745222	Not Available	756	Open in IMG/M
3300005331\|Ga0070670_100235496	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Caulobacter → Caulobacter vibrioides	1594	Open in IMG/M
3300005334\|Ga0068869_100028960	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3875	Open in IMG/M
3300005334\|Ga0068869_100542861	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Caulobacter → Caulobacter vibrioides	976	Open in IMG/M
3300005335\|Ga0070666_10077206	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2273	Open in IMG/M
3300005335\|Ga0070666_10486299	Not Available	894	Open in IMG/M
3300005338\|Ga0068868_100307504	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1348	Open in IMG/M
3300005338\|Ga0068868_101106555	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	729	Open in IMG/M
3300005339\|Ga0070660_101178569	Not Available	649	Open in IMG/M
3300005354\|Ga0070675_101546004	Not Available	612	Open in IMG/M
3300005367\|Ga0070667_100136064	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2148	Open in IMG/M
3300005458\|Ga0070681_10453981	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Caulobacter	1194	Open in IMG/M
3300005459\|Ga0068867_101722040	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	588	Open in IMG/M
3300005466\|Ga0070685_10251142	Not Available	1172	Open in IMG/M
3300005535\|Ga0070684_101347527	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	672	Open in IMG/M
3300005539\|Ga0068853_100782777	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	913	Open in IMG/M
3300005547\|Ga0070693_101512467	Not Available	525	Open in IMG/M
3300005548\|Ga0070665_100703484	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1023	Open in IMG/M
3300005548\|Ga0070665_101291967	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingobium	740	Open in IMG/M
3300005614\|Ga0068856_100370974	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Micropepsales → Micropepsaceae → Rhizomicrobium → unclassified Rhizomicrobium → Rhizomicrobium sp. SCGC AG-212-E05	1450	Open in IMG/M
3300005615\|Ga0070702_100329066	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1068	Open in IMG/M
3300005616\|Ga0068852_102084792	Not Available	589	Open in IMG/M
3300005618\|Ga0068864_101208934	Not Available	754	Open in IMG/M
3300005718\|Ga0068866_11282637	Not Available	532	Open in IMG/M
3300005719\|Ga0068861_101630033	Not Available	636	Open in IMG/M
3300005719\|Ga0068861_102375444	Not Available	533	Open in IMG/M
3300005842\|Ga0068858_100046134	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Caulobacter	4040	Open in IMG/M
3300005844\|Ga0068862_101562793	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	666	Open in IMG/M
3300005949\|Ga0066791_10050463	All Organisms → cellular organisms → Bacteria	822	Open in IMG/M
3300006237\|Ga0097621_100002331	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	13014	Open in IMG/M
3300006237\|Ga0097621_101500669	Not Available	640	Open in IMG/M
3300006358\|Ga0068871_100211998	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1676	Open in IMG/M
3300006358\|Ga0068871_100368510	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Caulobacter	1274	Open in IMG/M
3300006358\|Ga0068871_100510455	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Caulobacter → Caulobacter vibrioides	1084	Open in IMG/M
3300006358\|Ga0068871_100759463	All Organisms → cellular organisms → Bacteria	892	Open in IMG/M
3300006358\|Ga0068871_101704911	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	598	Open in IMG/M
3300006881\|Ga0068865_100560661	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	960	Open in IMG/M
3300007788\|Ga0099795_10252624	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingobium	761	Open in IMG/M
3300009092\|Ga0105250_10182501	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	881	Open in IMG/M
3300009093\|Ga0105240_10123922	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3108	Open in IMG/M
3300009098\|Ga0105245_12009644	Not Available	631	Open in IMG/M
3300009148\|Ga0105243_10986381	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingobium	844	Open in IMG/M
3300009174\|Ga0105241_11254225	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	704	Open in IMG/M
3300009176\|Ga0105242_10168138	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1925	Open in IMG/M
3300009176\|Ga0105242_10279606	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1515	Open in IMG/M
3300009176\|Ga0105242_10950549	Not Available	863	Open in IMG/M
3300009551\|Ga0105238_11930686	Not Available	623	Open in IMG/M
3300009551\|Ga0105238_12506768	Not Available	552	Open in IMG/M
3300009553\|Ga0105249_10314690	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1575	Open in IMG/M
3300009650\|Ga0105857_1276154	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylocella → Methylocella tundrae	510	Open in IMG/M
3300009651\|Ga0105859_1012973	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Caulobacter	2125	Open in IMG/M
3300009661\|Ga0105858_1111076	All Organisms → cellular organisms → Bacteria	745	Open in IMG/M
3300010375\|Ga0105239_10702221	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1156	Open in IMG/M
3300010375\|Ga0105239_11317675	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingobium	833	Open in IMG/M
3300011119\|Ga0105246_10178434	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1633	Open in IMG/M
3300012683\|Ga0137398_10457866	Not Available	873	Open in IMG/M
3300012924\|Ga0137413_10023966	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3253	Open in IMG/M
3300012929\|Ga0137404_10096515	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2376	Open in IMG/M
3300012930\|Ga0137407_10142739	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2107	Open in IMG/M
3300012984\|Ga0164309_11042257	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	677	Open in IMG/M
3300013105\|Ga0157369_11313755	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	737	Open in IMG/M
3300013296\|Ga0157374_12018271	Not Available	603	Open in IMG/M
3300013297\|Ga0157378_11849971	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Micropepsales → Micropepsaceae → Rhizomicrobium → unclassified Rhizomicrobium → Rhizomicrobium sp. SCGC AG-212-E05	652	Open in IMG/M
3300013297\|Ga0157378_12091041	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	617	Open in IMG/M
3300013297\|Ga0157378_12570073	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	561	Open in IMG/M
3300013306\|Ga0163162_10394170	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae	1517	Open in IMG/M
3300013308\|Ga0157375_10590032	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1271	Open in IMG/M
3300013308\|Ga0157375_11027830	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	963	Open in IMG/M
3300014968\|Ga0157379_10394198	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Caulobacter	1272	Open in IMG/M
3300015242\|Ga0137412_10013052	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae	6721	Open in IMG/M
3300015264\|Ga0137403_10026834	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae	6122	Open in IMG/M
3300015265\|Ga0182005_1227396	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	570	Open in IMG/M
3300017792\|Ga0163161_10018433	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae	4892	Open in IMG/M
3300020061\|Ga0193716_1005200	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	6931	Open in IMG/M
3300021181\|Ga0210388_10066087	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3039	Open in IMG/M
3300021445\|Ga0182009_10532543	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	622	Open in IMG/M
3300025321\|Ga0207656_10460533	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	643	Open in IMG/M
3300025903\|Ga0207680_10070904	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2158	Open in IMG/M
3300025903\|Ga0207680_10475842	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	888	Open in IMG/M
3300025903\|Ga0207680_10659424	Not Available	749	Open in IMG/M
3300025907\|Ga0207645_10043752	All Organisms → cellular organisms → Bacteria	2866	Open in IMG/M
3300025911\|Ga0207654_10469481	Not Available	885	Open in IMG/M
3300025913\|Ga0207695_10372769	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1314	Open in IMG/M
3300025914\|Ga0207671_11082659	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingobium	630	Open in IMG/M
3300025919\|Ga0207657_11403352	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	524	Open in IMG/M
3300025924\|Ga0207694_10380624	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1171	Open in IMG/M
3300025925\|Ga0207650_10633338	Not Available	901	Open in IMG/M
3300025926\|Ga0207659_10753252	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	835	Open in IMG/M
3300025935\|Ga0207709_10525933	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	926	Open in IMG/M
3300025937\|Ga0207669_11748799	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingobium	531	Open in IMG/M
3300025938\|Ga0207704_10562627	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	928	Open in IMG/M
3300025942\|Ga0207689_10055255	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae	3268	Open in IMG/M
3300025944\|Ga0207661_10018307	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	5204	Open in IMG/M
3300025961\|Ga0207712_10521783	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1018	Open in IMG/M
3300025981\|Ga0207640_10814470	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	810	Open in IMG/M
3300025986\|Ga0207658_10031361	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3773	Open in IMG/M
3300026023\|Ga0207677_10031982	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3377	Open in IMG/M
3300026023\|Ga0207677_10608683	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	959	Open in IMG/M
3300026041\|Ga0207639_10503029	Not Available	1107	Open in IMG/M
3300026078\|Ga0207702_10201999	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Micropepsales → Micropepsaceae → Rhizomicrobium → unclassified Rhizomicrobium → Rhizomicrobium sp. SCGC AG-212-E05	1843	Open in IMG/M
3300026089\|Ga0207648_10160190	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Caulobacter	1987	Open in IMG/M
3300026089\|Ga0207648_11102752	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	744	Open in IMG/M
3300026118\|Ga0207675_100551768	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1151	Open in IMG/M
3300026216\|Ga0209903_1014923	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Caulobacter → Caulobacter vibrioides	1338	Open in IMG/M
3300027903\|Ga0209488_10537175	Not Available	854	Open in IMG/M
3300028379\|Ga0268266_10352374	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae	1383	Open in IMG/M
3300028379\|Ga0268266_11068822	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingobium	781	Open in IMG/M
3300028380\|Ga0268265_11311209	Not Available	724	Open in IMG/M
3300028381\|Ga0268264_10057801	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3245	Open in IMG/M
3300030617\|Ga0311356_11439394	Not Available	625	Open in IMG/M
3300031446\|Ga0170820_17211448	Not Available	539	Open in IMG/M
3300031730\|Ga0307516_10012773	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	9027	Open in IMG/M
3300033475\|Ga0310811_10212178	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2346	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	75.65%
Environmental	Environmental	24.35%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	75.65%
Terrestrial	Environmental → Terrestrial	24.35%

Habitat	Taxonomy	Distribution
Rhizosphere	Host-Associated → Plants → Rhizosphere	42.61%
Rhizoplane	Host-Associated → Plants → Rhizoplane	26.09%
Soil	Environmental → Terrestrial → Soil	23.48%
Roots	Host-Associated → Plants → Roots	6.96%
Peat	Environmental → Terrestrial → Peat	0.87%

Habitat	Taxonomy	Distribution
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	26.09%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	25.22%
Soil	Host-Associated → Plants → Rhizosphere → Soil	17.39%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	12.17%
Loam	Environmental → Terrestrial → Soil → Loam	6.96%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	6.09%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	4.35%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.87%
Unclassified	Host-Associated → Plants → Roots → Unclassified	0.87%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	26.09%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	25.22%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	17.39%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	10.43%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.96%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	6.09%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	4.35%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	1.74%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.87%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	0.87%

Habitat	Taxonomy	Distribution
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	11.30%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	11.30%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	8.70%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	6.96%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	6.96%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	6.09%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	6.09%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	6.09%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	5.22%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	4.35%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	3.48%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.61%
Permafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost Soil	2.61%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	2.61%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	1.74%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.74%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	1.74%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.74%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.74%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.87%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.87%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.87%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	0.87%
Ectomycorrhiza	Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza	0.87%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.87%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.87%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.87%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005335	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG	Host-Associated	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005339	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG	Host-Associated	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005367	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG	Host-Associated	Open in IMG/M
3300005458	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG	Environmental	Open in IMG/M
3300005459	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2	Host-Associated	Open in IMG/M
3300005466	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG	Environmental	Open in IMG/M
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300005539	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2	Host-Associated	Open in IMG/M
3300005547	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG	Environmental	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300005615	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG	Environmental	Open in IMG/M
3300005616	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2	Host-Associated	Open in IMG/M
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated	Open in IMG/M
3300005718	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2	Host-Associated	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated	Open in IMG/M
3300005949	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil leachate replicate DNA2013-051	Environmental	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006358	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2	Host-Associated	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300007788	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2	Environmental	Open in IMG/M
3300009092	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG	Host-Associated	Open in IMG/M
3300009093	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009551	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300009650	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil DNA_2013-061	Environmental	Open in IMG/M
3300009651	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil DNA_2013-063	Environmental	Open in IMG/M
3300009661	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil DNA_2013-062	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300013105	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG	Host-Associated	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300015242	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015265	Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-103_1 MetaG	Host-Associated	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300020061	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2c1	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021445	Bulk soil microbial communities from the field in Mead, Nebraska, USA - 072115-187_1 MetaG	Environmental	Open in IMG/M
3300025321	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025903	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025907	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025911	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025913	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025914	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025919	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025924	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025925	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025935	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025937	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025938	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025942	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025944	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025961	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025981	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025986	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026023	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026041	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026089	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026216	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil leachate replicate DNA2013-051 (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300028379	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300030617	II_Palsa_N2 coassembly	Environmental	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031730	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM	Host-Associated	Open in IMG/M
3300033475	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YC	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0070676_111857772	3300005328	Miscanthus Rhizosphere	MAATLCLWGMTILASAESTKDQPVCQRSSALGGEGAWVPDPRFTYLKMGSCARIYRCVAPDKVQPGARHFTASSPKMQAGLCAPGVDSVDYCGLCQTDEPKQRC
Ga0070683_1022146671	3300005329	Corn Rhizosphere	MTVLASAEPVKAEPAIQRSGAPAGEGTWIRDPHFTFLKMGSCVRIYRCVAPDQTGDKHFTASPPKKQAGMCTPGVDSLDYCGLCETDEPKERCTYELK*
Ga0070690_1007452221	3300005330	Switchgrass Rhizosphere	VTTRNACFAGLMAATLCVWGMTVLGEPAKAGPAIQRSGAAVEGTWIRDPHFTFLKMGYCVRIYRCVAPDQTGDKHFTASPPKKQAGLCTPGVDSLDYCGLCQTDEPKERCTYDLK*
Ga0070670_1002354961	3300005331	Switchgrass Rhizosphere	MAVLASAEPAKAEPAIQPSGAPAVEGTWIRDPHFTFLKMGYCARVYRCVVPAQILAGARHFTVSPSKKQAGMCKPGVDSLDYCGLCETDE
Ga0068869_1000289607	3300005334	Miscanthus Rhizosphere	MAATLCLWGMTILASAESTKDQPVCQRSSALGGEGAWVPDPRFTYLKMGSCARIYRCVAPDKVQPGARHFTASSPKMQAGLCAPGVDSVDYCGLCQTDEPKQRCTYNFK*
Ga0068869_1005428613	3300005334	Miscanthus Rhizosphere	MAVLARAEPAKAEPAIQPSGAPAVEGTWIRDPHFTFLKMGYCARVYRCVVPAQILAGAKHFTVSPSKKQAGMCKPGVDSLDYCGLCETDE
Ga0070666_100772063	3300005335	Switchgrass Rhizosphere	MAATLCVWGMTVLGEPAKAGPAIQRSGAAVEGTWIRDPHFTFLKMGYCVRIYRCVAPDQTGDKHFTASPPKKQAGLCTPGVDSLDYCGLCQTDEPKERCTYDLK*
Ga0070666_104862991	3300005335	Switchgrass Rhizosphere	VLARAEPAKAEPAIQPSGAPAVEGTWIRDPHFTFLKMGYCARVYRCVVPAQILAGAKHFTVSPSKKQAGMCKPGVDSLDYCGLCETDEPKERCTYDLK*
Ga0068868_1003075042	3300005338	Miscanthus Rhizosphere	MTSKNACLAGLMAATLCVWGLLARAEPANAEPAIQRSGASAAEGTWIRDPHFTFLKMGYCVRIYRCVAPDQTGDKHFTASPPKKQAGMCTPGVDSLDYCGLCQTDEPKERCTYDLK*
Ga0068868_1011065552	3300005338	Miscanthus Rhizosphere	MTILASAESTKDQPVCQRSSALGGEGAWVPDPRFTYLKMGSCARIYRCVAPDKVQPGARHFTASSPKMQAGLCAPGVDSVDYCGLCQTDEPKQRCTYNFK*
Ga0070660_1011785692	3300005339	Corn Rhizosphere	MAATLYAWGMTLPARAEPAKAEPGMQRSGAPAAEGTWIRDPHFTFLKMGYCVRIYRCVAPDQTGDKHFTASPPKKQAGMCTPGVDSLDYCGLCETDEP
Ga0070675_1015460041	3300005354	Miscanthus Rhizosphere	MAAALCVWGMTVLASAEAPKAGPAIQRSGAAAVEGTWIPDARFTFLKMGSCVRIYRCVAPDQVRAGARHFTASSSKIQAGMCTPGVDSVDYCGLCETDEPKERCTYDLK*
Ga0070667_1001360643	3300005367	Switchgrass Rhizosphere	MAVLARAEPAKAEPAIQPSGAPAVEGTWIRDPHFTFLKMGYCARVYRCVVPAQILAGAKHFTVSPSKKQAGMCKPGVDSLDYCGLCETDEPKERCTYDLK*
Ga0070681_104539813	3300005458	Corn Rhizosphere	MTSRNVCFASLMAATLYVWGMTLPARAEPAKAELGMQRSGASAAEGTWIRDPHFTFLKMGSCVRIYRCVAPDQTGDKHFTASPPKKQAGMCTPGVDSLDYCGLC
Ga0068867_1017220402	3300005459	Miscanthus Rhizosphere	AVTSRNVCFAGFMAATLCLWGMTILASAESTKDQPVCQRSSALGGEGAWVPDPRFTYLKMGSCARIYRCVAPDKVQPGARHFTASSPKMQAGLCAPGVDSVDYCGLCQTDEPKQRCTYNFK*
Ga0070685_102511422	3300005466	Switchgrass Rhizosphere	MTVLASAAPAKAEPAIQRSGASAAEGTWIRDPHFTFLKMGYCVRIYRCVAPDQTGDKHFTASPPKKQAGLCTPGVDSLDYCGLCQTDEPKERCTYDLK*
Ga0070684_1013475272	3300005535	Corn Rhizosphere	GHRGRREAVYGWMTSRNVCFASLMAATLYVWGMTLPARAEPAKAEPGMQRSGASAAEGTWIRDPHFTFLKMGSCVRIYRCVAPDQTGDKHFTASPPKKQAGLCTPGVDSLDYCGLCQTDEPKERCTYDLK*
Ga0068853_1007827772	3300005539	Corn Rhizosphere	VTTRNACFAGLMAATLCVWGMTVLGEPAKAGPAIQRSGAAVEGTWIRDPHFTFLKMGYCVRIYRCVAPDQTGDKHFTASPPKKQAGMCTPGVDSLDYCGLCETDEPKERCTYELK*
Ga0070693_1015124672	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	MDVLARAEPAKAEPAIQPSGAPAVEGTWIRDPHFTFLKMGYCARVYRCVVPAQILAGAKHFTVSPSKKQAGMCKPGVDSLDYCGLCETDEPKERCTYELK*
Ga0070665_1007034842	3300005548	Switchgrass Rhizosphere	MTSRNVCFASLMAATLYVWGMTLPARAEPAKAEPGMQRSGASAAEGTWIRDPHFTFLKMGSCVRIYRCVAPDQTGDKHFTASPPKKQAGMCTPGVDSLDYCGLCETDEPKERCTYELK*
Ga0070665_1012919672	3300005548	Switchgrass Rhizosphere	MLASAETPKAGPAIQRSGAAAVEGTWIPDARFTFLKMGSCVRIYRCVAPDQVRAGARHFTASSSKIQAGMCTPGVDSVDYCGLCETDEPKERCTYDLK*
Ga0068856_1003709741	3300005614	Corn Rhizosphere	MTVLVSAEPAKAGPEIQRSGAAVEGTWIPDARFTFLKMGSCVRIYRCVAPDQIQAGARLFTASSPKRQKGLCTPGVDSVDYCGLCETDEPKERCTYDLK*
Ga0070702_1003290661	3300005615	Corn, Switchgrass And Miscanthus Rhizosphere	MAVLARAEPAKAEPAIQPSGAPAVEGTWIRDPHFTFLKMGYCARVYRCVVPAQILAGAKHFTVSPSKKQAGMCKPGVDSLDYCGL
Ga0068852_1020847921	3300005616	Corn Rhizosphere	EAVYGWMTSRNVCFASLMAATLYVWGMTLPARAEPAKAELGMQRSGASAAEGTWIRDPHFTFLKMGYCVRIYRCVAPDQTGDKHFTASPPKKQAGMCTPGVDSLDYCGLCETDEPKERCTYDLK*
Ga0068864_1012089342	3300005618	Switchgrass Rhizosphere	MTVLASAEPVKAEPAIQRSGAPAGEGTWIRDPHFTFLKMGSCVRIYRCVAPDQTGDKHFTASPPKKQAGLCTPGVDSLDYCGLCQTDEPKERCTYDLK*
Ga0068866_112826371	3300005718	Miscanthus Rhizosphere	MTPAQSLKQSTGNLMRLYDKQERLMTSKNACLAGLMAATLCVWGLLARAEPANAEPAIQRSGASAAEGTWIRDPHFTFLKMGYCVRIYRCVAPDQTGDRHFTASPPKKQAGMCTPGVDSLDYCGLCQTDEPKEHCTYDPK*
Ga0068861_1016300331	3300005719	Switchgrass Rhizosphere	MRAVTSRNVCFAGFMAATLCLWGMTILASAESTKDQPVCQRSSALGGEGAWVPDPRFTYLKMGSCARIYRCVAPDKVQPGARHFTASSPKMQAGLCAPGVDSVDYCGLCQTDEPKQRCTYNFK*
Ga0068861_1023754442	3300005719	Switchgrass Rhizosphere	MTVLASAAPAKAEPAIQRSGASAAEGTWIRDPHFTFLKMGYCVRIYRCVAPGQIQAGDRHFTASPPKKQAGMCTPGVDSLDYCGLCQTDEPRER
Ga0068858_1000461346	3300005842	Switchgrass Rhizosphere	MTVLGEPAKAGPAIQRSGAAVEGTWIRDPHFTFLKMGYCVRIYRCVAPDQTGDKHFTASPPKKQAGLCTPGVDSLDYCGLCQTDEPKERCTYDLK*
Ga0068862_1015627932	3300005844	Switchgrass Rhizosphere	GCCRFHAGLMAATLCVWGMTVLASAEPAKAEPAIQPSGAPAVEGTWIRDPHFTFLKMGYCARVYRCVVPAQILAGAKHFTVSPSKKQAGMCKPGVDSLDYCGLCETDEPKERCTYDLK*
Ga0066791_100504632	3300005949	Soil	MLASAEPAKAEPAIQRSGALAAPGAWIPDAHFTFLKMGSCVRMYRCAPPGQVPAGARHFTASPPKKQVGMCTPGVDSVDYCGLCETDEPKEHCTYDLK*
Ga0097621_1000023313	3300006237	Miscanthus Rhizosphere	MVATLFAWGMIVLGSVAPAKAEPAIQRSDAPAVEGRWIPDARFTFLKMGYCVRIYRCVAPEQIKAGARQFTPEKKKQTGMCKPGVDSLDYCGLCETDEPKEPCTYNLK*
Ga0097621_1015006691	3300006237	Miscanthus Rhizosphere	MLASAEPAKTEPASPLPSAPAVEGRWIRNAHFTFLKMGSCVRTYRCVAPGQIQAGASQFTSPPKKQMGMCKPGVDSLDYCGLC
Ga0068871_1002119985	3300006358	Miscanthus Rhizosphere	LARAEPAKAEPAIQPSGAPAVEGTWIRDPHFTFLKMGYCARVYRCVVPAQILAGTRHFTVSPSKKQAGMCKPGVDSLDYCGLCETDEPKERCTYDLK*
Ga0068871_1003685101	3300006358	Miscanthus Rhizosphere	MTSKNACLAGLMAATLCVWGLLARAEPANAEPAIQRSGASAAEGTWIRDPHFIFLKMGSCVRIYRCVAPGQIQAGDRHFTASPPKKQAGVCTPGVDSLDYCGLCQTDEPRERCTYDLK*
Ga0068871_1005104553	3300006358	Miscanthus Rhizosphere	MAGRARAIRNACFAGLMVAILCVWGMLESAEPAKAEPEIQHSRAVGLEGTWIRDPHFTFLKMGYCVRVYRCVAPGQIQAGAGHFSASPPKKQAGLCKPGVDSLDYCGLCETDEPKERCTYDLK*
Ga0068871_1007594632	3300006358	Miscanthus Rhizosphere	AKTEPASPLPSAAAVEGRWIPNAHFTFLKMGSCVRTYRCVAPGQIQASASQFTSPPKKQMGMCKPGVDSLDYCGLCETDEPKEHCTYNLK*
Ga0068871_1017049112	3300006358	Miscanthus Rhizosphere	LCVWGLLARAEPANAEPAIQRSGASAAEGIWIRDPHFTFLKMGSCVRIYRCVAPSQIQAGDRHFTASPPKKQAGMCTPGVDSLDYCGLCQTDEPRERCTYDLK*
Ga0068865_1005606612	3300006881	Miscanthus Rhizosphere	MTSKNACLAGLMAATLCVWGLLARAEPANAEPAIQRSGASAAEGTWIRDPHFIFLKMGSCVRIYRCVAPGQIQAGDRHFTASPPKKQAGMCTPGVDSLDYCGLCQTDEPRERCTYDLK*
Ga0099795_102526241	3300007788	Vadose Zone Soil	MTVLASAEPAKAEPAIQRSSTPAAEGAWIPDAHFTFLKMGSCVRIYRCVAPDQIQAGARHFTASSPKKQVGMCTPGVDSVDYCGLCETDEPKEHCTYDLK*
Ga0105250_101825013	3300009092	Switchgrass Rhizosphere	MAVLARAEPAKAEPAIQRSGASVAEGTWIRDPHFTFLKMGYCVRIYRCVAPDQTGDKHFTASPPKKQAGLCTPGVDSLDYCGLCQT
Ga0105240_101239223	3300009093	Corn Rhizosphere	MAATLYVWGMTLPARAEPAKAELGMQRSGASAAEGTWIRDPHFTFLKMGYCVRIYRCVAPDQTGDKHFTASPPKKQAGLCTPGVDSLDYCGLCETDEPKERCTYELK*
Ga0105245_120096441	3300009098	Miscanthus Rhizosphere	MTVLANAEPARAEPAIQRSGASAAEGIWIRDPHFTFLKMGSCVRIYRCVAPDQTGDKHFTASPPKKQAGLCTPGVDSLDYCGLCQTDEPKERCTYDLK*
Ga0105243_109863812	3300009148	Miscanthus Rhizosphere	MAGRARAIRNACFAGLMVAILCVWGMLESAEPAKAEPEIQHSRAVGLEGTWIRDPHFTFLKMGYCVRVYRCVAPAQILAGARHFSASPPKKQAGLCKPGVDSLDYCGLCETDEPKERCTYDLK*
Ga0105241_112542252	3300009174	Corn Rhizosphere	VLGEPAKAGPAIQRSGAAVEGTWIRDPHFTFLKMGSCVRIYRCVAPDQTGDKHFTASPPKKQAGMCTPGVDSLDYCGLCETDEPKERCTYELK*
Ga0105242_101681382	3300009176	Miscanthus Rhizosphere	MTVLASAEPAKTEPASPPSSAAAVEGTWIPNAHFTFLKMGSCMRTYRCVAPDKIQAGASQFTSQPKKQMGMCKPGVDSLDYCGLCETDEPKERCTYNLK*
Ga0105242_102796064	3300009176	Miscanthus Rhizosphere	LMTSKNACLAGLMAATLCVWGLLARAEPANAEPAIQRSGASAAEGTWIRDPHFTFLKMGYCVRIYRCVAPDQTGDRHFTASPPKKQAGMCTPGVDSLDYCGLCQTDEPKERCTYDLK*
Ga0105242_109505491	3300009176	Miscanthus Rhizosphere	MTSKNACLAGLMAAALCVWGLLARAEPANAEPAIQRSGASAAEGTWIRDPHFIFLKMGSCVRIYRCVAPGQIQAGDRHFTASPPKKQAGVCTPGVDSLDYCGLCQTDEPRERCTYDLK*
Ga0105238_119306861	3300009551	Corn Rhizosphere	MTSKNACLAGLMAATLCVWGLLARAEPANAEPAIQRSGASAAEGTWIRDPHFIFLKMGSCVRIYRCVAPGQIRAGDGHFTASPLKKQAGMCTPGVDSLDYCGLCQTDEPKEHCTYDPK
Ga0105238_125067681	3300009551	Corn Rhizosphere	MTVLASAEPAKAEPAIQPSGAPAVEGTWIRDPHFTFLKMGYCARVYRCVVPAQILAGTRHFTVSPSKKQAGMCKPGVDSLDYCGLCETDEPKERCTYDLK*
Ga0105249_103146902	3300009553	Switchgrass Rhizosphere	MTVLASAEAPKAGPAIQRSGAAAVEGTWIPDARFTFLKMGSCVRIYRCVAPGNIQAGARGFTVSPPKKQAGMCRSGVDSVDYCGLCETDEPKEHCTYDLK*
Ga0105857_12761542	3300009650	Permafrost Soil	MLASAEPAKAEPAMLRSSALAAPGAWIPDPHFTFLKMGSCVRIYRCVAPDQIQAGARHFTASSPKKQVGMCTPGVDSVDYCGLCETDEPKEHCTYDLK*
Ga0105859_10129733	3300009651	Permafrost Soil	MLASAEPAKTEPAIQRSGALAAPGAWIPDAHFTFLKMGSCVRIYRCVAPGQIQADARHFTASSPKKQVGMCTPGVDSVDYCGLCETDEPKEHCTYDLK*
Ga0105858_11110761	3300009661	Permafrost Soil	RSGALAAPGAWIPDAHFTFLKMGSCVRIYRCVAPDQIQAGARHFTASSPKKQVGMCTPGVDSVDYCGLCETDEPKEHCTYDLK*
Ga0105239_107022213	3300010375	Corn Rhizosphere	MAATLYVWGMTLPARAEPAKAELGMQRSGASAAEGTWIRDPHFTFLKMGSCVRIYRCVAPDQTGDKHFTASPPKKQAGMCTPGVDSLDYCGLCETDEPKERCTYELK*
Ga0105239_113176751	3300010375	Corn Rhizosphere	MTGLASAEAPKAGPAIQRSGAAAVEGTWIPDARFTFLKMGSCVRIYRCVAPDQVRARARHFTASSSKIQAGMCTPGVDSVDYCGLCETDEPKERCTYDLK*
Ga0105246_101784341	3300011119	Miscanthus Rhizosphere	LMSAALCVWGMTVLAGAEPAKTEPASLPSSAAAVEGTWIPNAHFTFLKMGSCMRTYRCVAPDKIQAGASQFTSPPKKQMGMCKPGVDSLDYCGLCETDEPKERCTYNLK*
Ga0137398_104578662	3300012683	Vadose Zone Soil	MTVLASAEPAKAEPAIQRSSALAVEGAWIPDAHFTFLKMGSCVRIYRCVAPDQIQAGARHFTASSPKKQVGMCTPGVDSVDYCGLCETDEPKEHCTYDLK*
Ga0137413_100239662	3300012924	Vadose Zone Soil	MTVLASAEPAKAEPAIRRSSALAVEGAWIPDAHFTFLKMGSCVRIYRCVAPDQLQAGARHFTASPKKKQVGMCTPGVDSVDYCGLCETDEPKERCTYDLK*
Ga0137404_100965153	3300012929	Vadose Zone Soil	MTVLASAEPAKAEPAIQRSSALAVEGAWIPDAHFTFLKMGSCVRIYRCVAPDHIQAGARHFNASPQKKQVGMCTPGVDSVDYCGLCETDEPKEHCTYDLK*
Ga0137407_101427393	3300012930	Vadose Zone Soil	MTIRNACFAGLMTATLCVWGMTVLPSAEPAKAEPAIQRSSALAVDGAWIPDAHFTFLKMGSCVRIYRCVAPDQIQAGARHFTASSPKKQVGMCTPGVDSVDYCGLCETDEPKEHCTYDLK
Ga0164309_110422571	3300012984	Soil	MTSKNACLAGLMAAALCVWGLLARAEPANAEPAIQRSGASAAEGTWIRDPHFIFLKMGSCVRTYRCVAPGQIRAGDGHFTASPPKKQAGMCTPGVDSLDYCGLCQTDEPRERCTYDLK*
Ga0157369_113137551	3300013105	Corn Rhizosphere	MTVLGEPAKAGPAIQRSGAAVEGTWIRDPHFTFLKMGYCVRIYRCVAPDQTGDKHFTASPPKKQAGMCTPGVDSLDYCGLCQTDEPKERCTYDLK*
Ga0157374_120182712	3300013296	Miscanthus Rhizosphere	MAVLARAEPAKAEPAIQPSGAPAVEGTWIRDPHFTFLKMGYCARVYRCVVPAQILAGAKHFTISPSKKQAGMCKPGVDSLDYCGLCETDEPKERCTYDLK*
Ga0157378_118499711	3300013297	Miscanthus Rhizosphere	GAPAVEGRWIPDARFTFLKMGYCVRIYRCVAPDQIQAGARQFTSPPKKQMGMCKPGVDSLDYCGLCETDEPKEPCTYDLK*
Ga0157378_120910411	3300013297	Miscanthus Rhizosphere	SIQRSGVLAVEGVWIPDAHFTFLKMGSCVRIYRCVAPGQILAGDRHFTASPPKKQAGMCTPGVDSLDYCGLCQTDEPRERCTYDLK*
Ga0157378_125700732	3300013297	Miscanthus Rhizosphere	ILASAESTKDQPVCQRSSALGGEGAWVPDPRFTYLKMGSCARIYRCVAPDKVQPGARHFTASSPKMQAGLCAPGVDSVDYCGLCQTDEPKQRCTYNFK*
Ga0163162_103941703	3300013306	Switchgrass Rhizosphere	MTSKNACLAGLMAAALCVWGLLARAEPANAEPAIQRSGASAAEGIWIRDPHFTFLKMGSCVRIYRCVAPSQIQAGDRHFTASPPKKQAGMCTPGVDSLDYCGLCQTDEPRERCTYDLK*
Ga0157375_105900322	3300013308	Miscanthus Rhizosphere	MTPAQSLKQSTGNLMRLYDKQERLMTSKNACLAGLMAATLCVWGLLARAEPANAEPAIQRSGASAAEGTWIRDPHFVFLKMGYCVRIYRCVAPDQTGDKHFTASPPKKQAGLCTPGVDSLDYCGLCQTDEPKERCTYDLK*
Ga0157375_110278302	3300013308	Miscanthus Rhizosphere	MTSKNACLAGLMAATLCVWGLLARAEPANAEPAIQRSGASAAEGTWIRDPHFTFLKMGSCVRIYRCVAPGQIQAGDRHFTASPPKKQAGVCTPGVDSLDYCGLCQTDEPRERCTYDLK*
Ga0157379_103941982	3300014968	Switchgrass Rhizosphere	MTSRNACFAGLMAATLCVWGMLASAEPAKAEPAIQRSGAPAVEGTWVRDPHFIFLKMGSCVRIYRCVAPGNIQAGARGFTVSPPKKQAGMCRSGVDSVDYCGLCETDEPKEHCTYDLK*
Ga0137412_100130522	3300015242	Vadose Zone Soil	MTVLASAEPAKAEPAIRRSSALAVEGAWIPDAHFTFLKMGSCVRIYRCVAPDQIQAGARHFTASSPKKQAGMCTPGVDSVDYCGLCETDEPKERCTYDLK*
Ga0137403_100268342	3300015264	Vadose Zone Soil	MTVLASAEPAKAEPAIQRSSALAVEGAWIPDAHFTFLKMGSCVRIYRCVAPDQVQAGARHFTASSPKKQMGMCTPGVDSVDYCGLCETDEPKEHCTYDLK*
Ga0182005_12273962	3300015265	Rhizosphere	ATLYVWGMTLPARAEPAKAELGMQRSGASAAEGTWIRDPHFTFLKMGYCVRIYRCVAPDQTGDKHFTASPPKKQAGMCTPGVDSLDYCGLCETDEPKERCTYELK*
Ga0163161_100184334	3300017792	Switchgrass Rhizosphere	MTSKNACLAGLMAATLCVWGLLARAEPANAEPAIQRSGASAAEGTWIRDPHFTFLKMGYCVRIYRCVAPDQTGDRHFTASPPKKQAGMCTPGVDSLDYCGLCQTDEPRERCTYDLK
Ga0193716_10052005	3300020061	Soil	MLASAEPAKAEPAIQRSGALAVEGTWIPDAHFTFLKMGSCVRMYRCVAPGEIQAGARHFTASPPKRQMGMCTPGVDSVDYCGLCETDEPKEHCTYDLK
Ga0210388_100660872	3300021181	Soil	MTVLASAEPAKAEPAIQRSSAAVEGAWIPDAHFTFLKMGSCVRIYRCVAPDQIQAGARHFTASSPKKQVGMCTPGVDSVDYCGLCETDEPKEHCTYDLK
Ga0182009_105325432	3300021445	Soil	LGMQRSGASAAEGTWIRDPHFTFLKMGSCVRIYRCVAPDQTGDKHFTASPPKKQAGMCTPGVDSLDYCGLCETDEPKERCTYELK
Ga0207656_104605332	3300025321	Corn Rhizosphere	SVTTRNACFAGLMAATLCVWGMTVLASAEPVKAEPAIQRSGASAAEGTWIRDPHFTFLKMGYCVRIYRCVAPGQIQAGDRHFTASPPKKQAGVCTPGVDSLDYCGLCQTDEPKERCTYDL
Ga0207680_100709043	3300025903	Switchgrass Rhizosphere	MTVLGSRQRAGPAIQRSGAAVEGTWIRDPHFTFLKMGYCVRIYRCVAPDQTGDKHFTASPPKKQAGLCTPGVDSLDYCGLCQTDEPKERCTYDLK
Ga0207680_104758422	3300025903	Switchgrass Rhizosphere	MAAALCVWGMTVLASAEAPKAGPTIQRSGAAAVEGTWIPDARFTFLKMGSCVRIYRCVAPDQVRAGARHFTASSSKIQAGMCTPGVDSVDYCGLCETDEPKERCTYDLK
Ga0207680_106594241	3300025903	Switchgrass Rhizosphere	MAATLCVWGMAVLARAEPAKAEPAIQPSGAPAVEGTWIRDPHFTFLKMGYCARVYRCVVPAQILAGAKHFTVSPSKKQAGMCKPGVDSLDYCGLCETDEPKERCTYDLK
Ga0207645_100437522	3300025907	Miscanthus Rhizosphere	MRAVTSRNVCFAGFMAATLCLWGMTILASAESTKDQPVCQRSSALGGEGAWVPDPRFTYLKMGSCARIYRCVAPDKVQPGARHFTASSPKMQAGLCAPGVDSVDYCGLCQTDEPKQRCIYNFK
Ga0207654_104694812	3300025911	Corn Rhizosphere	MAVLARAEPAKAEPAIQPSGAPAVEGTWIRDPHFTFLKMGYCARVYRCVVPAQILAGAKHFTVSPSKKQAGMCKPGVDSLDYCGLCETDEPKERCTYDLK
Ga0207695_103727692	3300025913	Corn Rhizosphere	MTSRNVCFASLMAATLYVWGMTLPARAEPAKAELGMQRSGASAAEGTWIRDPHFTFLKMGSCVRIYRCVAPDQTGDKHFTASPPKKQAGMCTPGVDSLDYCGLCETDEPKERCTYELK
Ga0207671_110826591	3300025914	Corn Rhizosphere	MTVLGEPAKAGPAIQRSGAAVEGTWIRDPHFTFLKMGYCVRIYRCVAPDQTGDKHFTASPPKKQAGMCTPGVDSLDYCGLCETDEPKERCTYELK
Ga0207657_114033522	3300025919	Corn Rhizosphere	GMTVLGEPAKAGPAIQRSGAAVEGTWIRDPHFTFLKMGYCVRIYRCVAPDQTGDKHFTASPPKKQAGMCTPGVDSLDYCGLCETDEPKERCTYDLK
Ga0207694_103806243	3300025924	Corn Rhizosphere	MTVLGEPAKAGPAIQRSGAAVEGTWIRDPHFTFLKMGYCVRIYRCVAPDQTGDKHFTASPPKKQAGMCTPGVDSLDYCGLCQTDEPKERCTYDLK
Ga0207650_106333382	3300025925	Switchgrass Rhizosphere	MAATLCVWGMTMLASAETPKAGPAIQRSGAAAVEGTWFPDARFTFLKMGYCVRIYRCVAPDQTGDKHFTASPPKKQAGLCTPGVDSLDYCGLCQTDEPKERCTYDLK
Ga0207659_107532521	3300025926	Miscanthus Rhizosphere	MRAVTSRNVCFAGFMAATLCLWGMTILASAESTKDQPVCQRSSALGGEGAWVPDPRFTYLKMGSCARIYRCVAPDKVQPGARHFTASSPKMQAGLCAPGVDSVDYCGLCQTDEPKQRCTYNFK
Ga0207709_105259332	3300025935	Miscanthus Rhizosphere	MAGRARAIRNACFAGLMVAILCVWGMLESAEPAKAEPEIQHSRAVGLEGTWIRDPHFTFLKMGYCVRVYRCVAPAQILAGARHFSASPPKKQAGLCKPGVDSLDYCGLCETDEPKERCTYDLK
Ga0207669_117487991	3300025937	Miscanthus Rhizosphere	MTSRNACLAGLMAATLCVWGLLARAEPANAEPAIQRSGASAAEGTWIRDPHFTFLKMGYCVRIYRCVAPDQTGDRHFTASPPKKQAGMCTPGVDSLDYC
Ga0207704_105626271	3300025938	Miscanthus Rhizosphere	LAGLMAATLCVWGLLARAEPANAEPAIQRSGASAAEGTWIRDPHFIFLKMGSCVRIYRCVAPGQIQAGDRHFTASPPKKQAGMCTPGVDSLDYCGLCQTDEPRERCTYDLK
Ga0207689_100552554	3300025942	Miscanthus Rhizosphere	MAATLCLWGMTILASAESTKDQPVCQRSSALGGEGAWVPDPRFTYLKMGSCARIYRCVAPDKVQPGARHFTASSPKMQAGLCAPGVDSVDYCGLCQTDEPKQRCTYNFK
Ga0207661_100183076	3300025944	Corn Rhizosphere	MTVLASAEPVKAEPAIQRSGAPAGEGTWIRDPHFTFLKMGSCVRIYRCVAPDQTGDKHFTASPPKKQAGMCTPGVDSLDYCGLCETDEPKERCTYELK
Ga0207712_105217831	3300025961	Switchgrass Rhizosphere	MAAALCVWGMTVLASAEAPKAGPAIQRSGAAAVEGTWIPDARFTFLKMGSCVRIYRCVAPDQVRAGARHFTASSSKIQAGMCTPGVDSVDYCGLCETDEPKERCTYDLK
Ga0207640_108144702	3300025981	Corn Rhizosphere	LVVITAEGWASWRMAATLCVWGMTVLGEPAKAGPAIQRSGAAVEGTWIRDPHFTFLKMGYCVRIYRCVAPDQTGDKHFTASPPKKQAGMCTPGVDSLDYCGLCETDEPKERCTYELK
Ga0207658_100313613	3300025986	Switchgrass Rhizosphere	VTTRNACFAGLMAATLCVWGMTVLGEPAKAGPAIQRSGAAVEGTWIRDPHFTFLKMGYCVRIYRCVAPDQTGDKHFTASPPKKQAGLCTPGVDSLDYCGLCQTDEPKERCTYDLK
Ga0207677_100319825	3300026023	Miscanthus Rhizosphere	MAATLCVWGMTVLGEPAKAGPAIQRSGAAVEGTWIRDPHFTFLKMGYCVRIYRCVAPDQTGDKHFTASPPKKQAGLCTPGVDSLDYCGLCQTDEPKERCTYDLK
Ga0207677_106086833	3300026023	Miscanthus Rhizosphere	MAVLARAEPAKAEPAIQPSGAPAVEGTWIRDPHFTFLKMGYCARVYRCVVPAQILAGAKHFTISPSKKQAGMCKPGVDSLDYCGLCETDEPKERCTYELK
Ga0207639_105030293	3300026041	Corn Rhizosphere	MTSRNVCFASLMAATLYVWGMTLPARAEPAKAEPGMQRSGAPAVEGTWIRDPHFTFLKMGYCVRIYRCVAPDQTGDKHFTASPPKKQAGMCTPGVDSLDYCGLCETDEPKERCTYELK
Ga0207702_102019992	3300026078	Corn Rhizosphere	MTVLVSAEPAKAGPEIQRSGAAVEGTWIPDARFTFLKMGSCVRIYRCVAPDQIQAGARLFTASSPKRQKGLCTPGVDSVDYCGLCETDEPKERCTYDLK
Ga0207648_101601903	3300026089	Miscanthus Rhizosphere	MTSKNACLAGLMAATLCVWGLLARAEPANAEPAIQRSGASAAEGTWIRDPHFIFLKMGSCVRIYRCVAPGQIQVGDRHFTASPPKKQAGMCTPGVDSLDYCGLCQTDEPRERCTYDLK
Ga0207648_111027522	3300026089	Miscanthus Rhizosphere	MTILASAESTKDQPVCQRSSALGGEGAWVPDPRFTYLKMGSCARIYRCVAPDKVQPGARHFTASSPKMQAGLCAPGVDSVDYCGLCQTDEPKQRCTYNFK
Ga0207675_1005517682	3300026118	Switchgrass Rhizosphere	VTTRNACFAGLMAATLCVWGMTVLASAAPAKAEPAIQRSGASAAEGTWIRDPHFTFLKMGYCVRIYRCVAPDQTGDKHFTASPPKKQAGLCTPGVDSLDYCGLCETDEPKERCTYDLK
Ga0209903_10149232	3300026216	Soil	MLASAEPAKTEPAIQRSGALAAPGAWIPDAHFTFLKMGSCVRIYRCVAPDQIQAGARHFTASSPKKQVGMCTPGVDSVDYCGLCETDEPKEHCTYDLK
Ga0209488_105371751	3300027903	Vadose Zone Soil	MTGLASAEPAKAEPAIQRSSALAVEGAWIPDAHFTFLKMGSCVRIYRCVAPDQIQAGARHFTASSPKKQVGMCTPGVDSVDYCGLCETDEPKEHCTYDLK
Ga0268266_103523743	3300028379	Switchgrass Rhizosphere	MTVLGEPAKAGPAIQRSGAAVEGTWIRDPHFTFLKMGYCVRIYRCVAPDQTGDKHFTASPPKKQAGLCTPGVDSLDYCGLC
Ga0268266_110688221	3300028379	Switchgrass Rhizosphere	MLASAETPKAGPAIQRSGAAAVEGTWIPDARFTFLKMGSCVRIYRCVAPDQVRAGARHFTASSSKIQAGMCTPGVDSVDYCGLCETDEPKERCTYDLK
Ga0268265_113112092	3300028380	Switchgrass Rhizosphere	MTVLASAAPAKAEPAIQRSGASAAEGTWIRDPHFTFLKMGYCVRIYRCVAPDQTGDKHFTASPPKKQAGLCTPGVDSLDYCGLCQTDEPKERCTYDLK
Ga0268264_100578014	3300028381	Switchgrass Rhizosphere	MTVLGEPAKAGPAIQRSGAAVEGTWIRDPHFTFLKMGYCVRIYRCVAPDQTGDKHFTASPPKKQAGLCTPGVDSLDYCGLCQTDEPKERCTYDLK
Ga0311356_114393941	3300030617	Palsa	PAKAEPAIQRSSALPVEGAWVPDAHFTFLKMGSCVRIYRCVAPDQIQAGARHFTASSPKKQVGMCTPGVDSVDYCGLCETDEPKEHCTYDLK
Ga0170820_172114481	3300031446	Forest Soil	MAATLCVWGMTVLASVEPVKAEPAIQRPSALPLEGTWMPDAHFTFLKMGSCVRIYRCVAPDQSQAGARHFTASSPKKQMGMCTPGVDSVDYCGLCETDEPKEHCTYDLK
Ga0307516_100127733	3300031730	Ectomycorrhiza	MTLARSLRYDNLMRLCDKQDAWFAGLMATTLCVWGMTVLASAGPAKVEPAIQPSNVLAVDGAWIPDAHFTFLKMGSCVRIYRCVAPDQIQAGARHFTASPPKKQVGMCTPGVDSVDYCGLCETDEPKERCTYDLK
Ga0310811_102121782	3300033475	Soil	MTSRNVCFASLMAATLYVWGMTLPARAEPAKAELGMQRSGASAAEGTWIRDPHFTFLKMGYCVRIYRCVAPDQTGDKHFTASPPKKQAGMCTPGVDSLDYCGLCETDEPKERCTYELK

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F080192

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences