NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F080118

Metagenome Family F080118

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F080118
Family Type Metagenome
Number of Sequences 115
Average Sequence Length 65 residues
Representative Sequence MSANGKPTIDRIDHGVVPSNDLGRAHRFYGTFMGGEIDHLTNLNLRGLNREVPQIIFYTLANH
Number of Associated Samples 107
Number of Associated Scaffolds 115

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 97.39 %
% of genes near scaffold ends (potentially truncated) 99.13 %
% of genes from short scaffolds (< 2000 bps) 90.43 %
Associated GOLD sequencing projects 102
AlphaFold2 3D model prediction Yes
3D model pTM-score0.31

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (100.000 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil
(14.783 % of family members)
Environment Ontology (ENVO) Unclassified
(28.696 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(40.870 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 0.00%    β-sheet: 30.77%    Coil/Unstructured: 69.23%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.31
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 115 Family Scaffolds
PF04392ABC_sub_bind 14.78
PF13416SBP_bac_8 8.70
PF02423OCD_Mu_crystall 5.22
PF01547SBP_bac_1 2.61
PF13560HTH_31 1.74
PF01850PIN 1.74
PF08780NTase_sub_bind 0.87
PF01909NTP_transf_2 0.87
PF01936NYN 0.87

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 115 Family Scaffolds
COG2984ABC-type uncharacterized transport system, periplasmic componentGeneral function prediction only [R] 14.78
COG2423Ornithine cyclodeaminase/archaeal alanine dehydrogenase, mu-crystallin familyAmino acid transport and metabolism [E] 5.22
COG1432NYN domain, predicted PIN-related RNAse, tRNA/rRNA maturationGeneral function prediction only [R] 0.87


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms100.00 %
UnclassifiedrootN/A0.00 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
2199352025|deepsgr__Contig_8764All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium1411Open in IMG/M
2228664021|ICCgaii200_c0298779All Organisms → cellular organisms → Bacteria581Open in IMG/M
3300000364|INPhiseqgaiiFebDRAFT_101430530All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium1407Open in IMG/M
3300000559|F14TC_101146884All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium532Open in IMG/M
3300000787|JGI11643J11755_11573798All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium911Open in IMG/M
3300000890|JGI11643J12802_11147472All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium800Open in IMG/M
3300001139|JGI10220J13317_11193467All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium516Open in IMG/M
3300002459|JGI24751J29686_10134976All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium521Open in IMG/M
3300003152|Ga0052254_1017902All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium605Open in IMG/M
3300003911|JGI25405J52794_10047849All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium913Open in IMG/M
3300005093|Ga0062594_102728115All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium547Open in IMG/M
3300005171|Ga0066677_10294754All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium926Open in IMG/M
3300005181|Ga0066678_10484331All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium823Open in IMG/M
3300005183|Ga0068993_10286489All Organisms → cellular organisms → Bacteria592Open in IMG/M
3300005186|Ga0066676_10080692All Organisms → cellular organisms → Bacteria1931Open in IMG/M
3300005294|Ga0065705_10449772All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium826Open in IMG/M
3300005335|Ga0070666_10474251All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium905Open in IMG/M
3300005341|Ga0070691_10886911All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium549Open in IMG/M
3300005439|Ga0070711_101335550All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium623Open in IMG/M
3300005445|Ga0070708_101233291All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium699Open in IMG/M
3300005457|Ga0070662_100089571All Organisms → cellular organisms → Bacteria2308Open in IMG/M
3300005457|Ga0070662_100583215All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium939Open in IMG/M
3300005530|Ga0070679_100024528All Organisms → cellular organisms → Bacteria → Proteobacteria5910Open in IMG/M
3300005552|Ga0066701_10593763All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium675Open in IMG/M
3300005555|Ga0066692_10406052All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium864Open in IMG/M
3300005557|Ga0066704_10400076All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium912Open in IMG/M
3300005568|Ga0066703_10298884All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium974Open in IMG/M
3300005713|Ga0066905_100934552All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium761Open in IMG/M
3300006032|Ga0066696_11024271All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium525Open in IMG/M
3300006034|Ga0066656_11136217All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium502Open in IMG/M
3300006049|Ga0075417_10051080All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium1785Open in IMG/M
3300006049|Ga0075417_10195238All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium957Open in IMG/M
3300006058|Ga0075432_10587214All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium508Open in IMG/M
3300006358|Ga0068871_100105947All Organisms → cellular organisms → Bacteria2360Open in IMG/M
3300006800|Ga0066660_10332099All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium1227Open in IMG/M
3300006806|Ga0079220_10813289All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium709Open in IMG/M
3300006844|Ga0075428_102320209All Organisms → cellular organisms → Bacteria552Open in IMG/M
3300006852|Ga0075433_11699798All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium543Open in IMG/M
3300006871|Ga0075434_102220396All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium552Open in IMG/M
3300006904|Ga0075424_100261854All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium1839Open in IMG/M
3300006904|Ga0075424_100401981All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium1461Open in IMG/M
3300006914|Ga0075436_100015780All Organisms → cellular organisms → Bacteria5171Open in IMG/M
3300006954|Ga0079219_10026435All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium2233Open in IMG/M
3300007255|Ga0099791_10569079All Organisms → cellular organisms → Bacteria553Open in IMG/M
3300009098|Ga0105245_11101391All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium840Open in IMG/M
3300009137|Ga0066709_101637417All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium918Open in IMG/M
3300009147|Ga0114129_10548385All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium1504Open in IMG/M
3300009147|Ga0114129_11251819All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium RIFCSPLOWO2_02_FULL_57_26922Open in IMG/M
3300009157|Ga0105092_10108179All Organisms → cellular organisms → Bacteria → Proteobacteria1529Open in IMG/M
3300009162|Ga0075423_12534611All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium560Open in IMG/M
3300009168|Ga0105104_10171270All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium RIFCSPLOWO2_02_FULL_57_261177Open in IMG/M
3300009807|Ga0105061_1010027All Organisms → cellular organisms → Bacteria1174Open in IMG/M
3300009836|Ga0105068_1099443All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium566Open in IMG/M
3300010043|Ga0126380_11188189All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium656Open in IMG/M
3300010047|Ga0126382_10686195All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium857Open in IMG/M
3300010358|Ga0126370_12125525All Organisms → cellular organisms → Bacteria552Open in IMG/M
3300011437|Ga0137429_1076593All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria999Open in IMG/M
3300012140|Ga0137351_1037019All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria676Open in IMG/M
3300012157|Ga0137353_1076805All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium621Open in IMG/M
3300012210|Ga0137378_11767371All Organisms → cellular organisms → Bacteria523Open in IMG/M
3300012285|Ga0137370_10079230All Organisms → cellular organisms → Bacteria1818Open in IMG/M
3300012350|Ga0137372_10803157All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium675Open in IMG/M
3300012360|Ga0137375_11390305All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium523Open in IMG/M
3300012484|Ga0157333_1005399All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium797Open in IMG/M
3300012899|Ga0157299_10022350All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium1212Open in IMG/M
3300012927|Ga0137416_10956293All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium764Open in IMG/M
3300012986|Ga0164304_10267112All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium1156Open in IMG/M
3300013306|Ga0163162_10230217All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium1984Open in IMG/M
3300013308|Ga0157375_10245582All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium1950Open in IMG/M
3300015245|Ga0137409_10452541All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium1104Open in IMG/M
3300015262|Ga0182007_10206107All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium689Open in IMG/M
3300015373|Ga0132257_100711946All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium1248Open in IMG/M
3300015373|Ga0132257_103799235All Organisms → cellular organisms → Bacteria549Open in IMG/M
3300016404|Ga0182037_10295264All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium1300Open in IMG/M
3300017944|Ga0187786_10106764All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium952Open in IMG/M
3300018031|Ga0184634_10034382All Organisms → cellular organisms → Bacteria2024Open in IMG/M
3300018051|Ga0184620_10041562All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium1258Open in IMG/M
3300018066|Ga0184617_1021637All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium1437Open in IMG/M
3300018066|Ga0184617_1248493All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium533Open in IMG/M
3300018072|Ga0184635_10161704All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium894Open in IMG/M
3300018079|Ga0184627_10368481All Organisms → cellular organisms → Bacteria750Open in IMG/M
3300018082|Ga0184639_10043956All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium2298Open in IMG/M
3300019789|Ga0137408_1052929All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium1922Open in IMG/M
3300019876|Ga0193703_1061439All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium565Open in IMG/M
3300019998|Ga0193710_1021363All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium665Open in IMG/M
3300020010|Ga0193749_1005111All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium2530Open in IMG/M
3300021080|Ga0210382_10203619All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium860Open in IMG/M
3300021081|Ga0210379_10263548All Organisms → cellular organisms → Bacteria750Open in IMG/M
3300021088|Ga0210404_10549482All Organisms → cellular organisms → Bacteria655Open in IMG/M
3300025903|Ga0207680_11248482All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium529Open in IMG/M
3300025903|Ga0207680_11356455All Organisms → cellular organisms → Bacteria505Open in IMG/M
3300025910|Ga0207684_10531994All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium1006Open in IMG/M
3300025910|Ga0207684_10747188All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium829Open in IMG/M
3300025912|Ga0207707_10383018All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium1209Open in IMG/M
3300025923|Ga0207681_10078424All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium2324Open in IMG/M
3300025925|Ga0207650_10096980All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium2262Open in IMG/M
3300025944|Ga0207661_11020053All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium762Open in IMG/M
3300026529|Ga0209806_1268251All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium574Open in IMG/M
3300026536|Ga0209058_1038123All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium2870Open in IMG/M
3300026540|Ga0209376_1145978All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium1140Open in IMG/M
3300027680|Ga0207826_1174638All Organisms → cellular organisms → Bacteria584Open in IMG/M
3300027691|Ga0209485_1011928All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium1867Open in IMG/M
3300027722|Ga0209819_10169249All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium764Open in IMG/M
3300027909|Ga0209382_12167151All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium527Open in IMG/M
3300027956|Ga0209820_1140357All Organisms → cellular organisms → Bacteria665Open in IMG/M
3300031184|Ga0307499_10137298All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium706Open in IMG/M
3300031716|Ga0310813_10541574All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium1023Open in IMG/M
3300031740|Ga0307468_100954994All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium749Open in IMG/M
3300031858|Ga0310892_10699556All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium695Open in IMG/M
3300031943|Ga0310885_10882705All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium512Open in IMG/M
3300031947|Ga0310909_11198938All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium614Open in IMG/M
3300031962|Ga0307479_10354253All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium1451Open in IMG/M
3300032180|Ga0307471_100750078All Organisms → cellular organisms → Bacteria1142Open in IMG/M
3300032205|Ga0307472_102172353All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium559Open in IMG/M
3300033433|Ga0326726_11110209All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium769Open in IMG/M



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil14.78%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere11.30%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil6.96%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil6.96%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment6.09%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere4.35%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere4.35%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment3.48%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil3.48%
SoilEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Soil2.61%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil2.61%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil2.61%
Corn RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere2.61%
Groundwater SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment1.74%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil1.74%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural → Soil1.74%
SoilEnvironmental → Terrestrial → Soil → Loam → Grasslands → Soil1.74%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil1.74%
Groundwater SandEnvironmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand1.74%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere1.74%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere1.74%
SedimentEnvironmental → Aquatic → Freshwater → Lentic → Sediment → Sediment0.87%
Natural And Restored WetlandsEnvironmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands0.87%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil0.87%
Switchgrass RhizosphereEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere0.87%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil0.87%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil0.87%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil0.87%
Tropical PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland0.87%
Peat SoilEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil0.87%
Tabebuia Heterophylla RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere0.87%
Corn, Switchgrass And Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere0.87%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere0.87%
Miscanthus RhizosphereHost-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere0.87%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere0.87%
RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere0.87%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere0.87%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
2199352025Soil microbial communities from Rothamsted, UK, for project Deep Soil - DEEP SOILEnvironmentalOpen in IMG/M
2228664021Soil microbial communities from Great Prairies - Iowa, Continuous Corn soilEnvironmentalOpen in IMG/M
3300000364Soil microbial communities from Great Prairies - Iowa, Native Prairie soilEnvironmentalOpen in IMG/M
3300000559Amended soil microbial communities from Kansas Great Prairies, USA - control no BrdU total DNA F1.4 TC clc assemlyEnvironmentalOpen in IMG/M
3300000787Soil microbial communities from Great Prairies - Iowa, Continuous Corn soilEnvironmentalOpen in IMG/M
3300000890Soil microbial communities from Great Prairies - Iowa, Continuous Corn soilEnvironmentalOpen in IMG/M
3300001139Soil microbial communities from Great Prairies - Wisconsin, Switchgrass soilEnvironmentalOpen in IMG/M
3300002459Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6Host-AssociatedOpen in IMG/M
3300003152Freshwater sediment microbial communities from Loktak Lake, IndiaEnvironmentalOpen in IMG/M
3300003911Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1Host-AssociatedOpen in IMG/M
3300005093Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All BlocksEnvironmentalOpen in IMG/M
3300005171Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126EnvironmentalOpen in IMG/M
3300005181Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127EnvironmentalOpen in IMG/M
3300005183Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqC_D1EnvironmentalOpen in IMG/M
3300005186Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125EnvironmentalOpen in IMG/M
3300005294Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk SoilEnvironmentalOpen in IMG/M
3300005335Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaGHost-AssociatedOpen in IMG/M
3300005341Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaGEnvironmentalOpen in IMG/M
3300005439Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaGEnvironmentalOpen in IMG/M
3300005445Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaGEnvironmentalOpen in IMG/M
3300005457Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaGHost-AssociatedOpen in IMG/M
3300005530Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaGEnvironmentalOpen in IMG/M
3300005552Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150EnvironmentalOpen in IMG/M
3300005555Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141EnvironmentalOpen in IMG/M
3300005557Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153EnvironmentalOpen in IMG/M
3300005568Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152EnvironmentalOpen in IMG/M
3300005713Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)EnvironmentalOpen in IMG/M
3300006032Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145EnvironmentalOpen in IMG/M
3300006034Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105EnvironmentalOpen in IMG/M
3300006049Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1Host-AssociatedOpen in IMG/M
3300006058Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1Host-AssociatedOpen in IMG/M
3300006358Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2Host-AssociatedOpen in IMG/M
3300006800Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109EnvironmentalOpen in IMG/M
3300006806Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100EnvironmentalOpen in IMG/M
3300006844Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2Host-AssociatedOpen in IMG/M
3300006852Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2Host-AssociatedOpen in IMG/M
3300006871Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3Host-AssociatedOpen in IMG/M
3300006904Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3Host-AssociatedOpen in IMG/M
3300006914Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5Host-AssociatedOpen in IMG/M
3300006954Agricultural soil microbial communities from Georgia to study Nitrogen management - GA ControlEnvironmentalOpen in IMG/M
3300007255Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1EnvironmentalOpen in IMG/M
3300009098Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaGHost-AssociatedOpen in IMG/M
3300009137Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158EnvironmentalOpen in IMG/M
3300009147Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)Host-AssociatedOpen in IMG/M
3300009157Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm March2015EnvironmentalOpen in IMG/M
3300009162Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2Host-AssociatedOpen in IMG/M
3300009168Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 19-21cm September2015EnvironmentalOpen in IMG/M
3300009807Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_0_10EnvironmentalOpen in IMG/M
3300009836Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_10_20EnvironmentalOpen in IMG/M
3300010043Tropical forest soil microbial communities from Panama - MetaG Plot_26EnvironmentalOpen in IMG/M
3300010047Tropical forest soil microbial communities from Panama - MetaG Plot_30EnvironmentalOpen in IMG/M
3300010358Tropical forest soil microbial communities from Panama - MetaG Plot_3EnvironmentalOpen in IMG/M
3300011437Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT736_2EnvironmentalOpen in IMG/M
3300012140Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT690_2EnvironmentalOpen in IMG/M
3300012157Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT760_2EnvironmentalOpen in IMG/M
3300012210Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaGEnvironmentalOpen in IMG/M
3300012285Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaGEnvironmentalOpen in IMG/M
3300012350Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaGEnvironmentalOpen in IMG/M
3300012360Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_113_16 metaGEnvironmentalOpen in IMG/M
3300012484Unplanted soil (control) microbial communities from North Carolina - M.Soil.2.old.190510EnvironmentalOpen in IMG/M
3300012899Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S058-202B-2EnvironmentalOpen in IMG/M
3300012927Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012986Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MGEnvironmentalOpen in IMG/M
3300013306Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaGHost-AssociatedOpen in IMG/M
3300013308Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaGHost-AssociatedOpen in IMG/M
3300015245Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300015262Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaGHost-AssociatedOpen in IMG/M
3300015373Combined assembly of cpr5 rhizosphereHost-AssociatedOpen in IMG/M
3300016404Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082EnvironmentalOpen in IMG/M
3300017944Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0815_BV2_10_20_MGEnvironmentalOpen in IMG/M
3300018031Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b1EnvironmentalOpen in IMG/M
3300018051Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_b1EnvironmentalOpen in IMG/M
3300018066Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_b1EnvironmentalOpen in IMG/M
3300018072Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b2EnvironmentalOpen in IMG/M
3300018079Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_127_b1EnvironmentalOpen in IMG/M
3300018082Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_170_b2EnvironmentalOpen in IMG/M
3300019789Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (PacBio error correction)EnvironmentalOpen in IMG/M
3300019876Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3a2EnvironmentalOpen in IMG/M
3300019998Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H3m1EnvironmentalOpen in IMG/M
3300020010Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1s2EnvironmentalOpen in IMG/M
3300021080Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_coex redoEnvironmentalOpen in IMG/M
3300021081Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32_coex redoEnvironmentalOpen in IMG/M
3300021088Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-MEnvironmentalOpen in IMG/M
3300025903Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025910Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025912Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025923Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025925Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025944Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)EnvironmentalOpen in IMG/M
3300026529Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152 (SPAdes)EnvironmentalOpen in IMG/M
3300026536Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147 (SPAdes)EnvironmentalOpen in IMG/M
3300026540Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134 (SPAdes)EnvironmentalOpen in IMG/M
3300027680Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 80 (SPAdes)EnvironmentalOpen in IMG/M
3300027691Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS100 (SPAdes)EnvironmentalOpen in IMG/M
3300027722Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm March2015 (SPAdes)EnvironmentalOpen in IMG/M
3300027909Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)Host-AssociatedOpen in IMG/M
3300027956Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm May2015 (SPAdes)EnvironmentalOpen in IMG/M
3300031184Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 13_SEnvironmentalOpen in IMG/M
3300031716Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3EnvironmentalOpen in IMG/M
3300031740Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05EnvironmentalOpen in IMG/M
3300031858Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D2EnvironmentalOpen in IMG/M
3300031943Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D2EnvironmentalOpen in IMG/M
3300031947Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000HEnvironmentalOpen in IMG/M
3300031962Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515EnvironmentalOpen in IMG/M
3300032180Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515EnvironmentalOpen in IMG/M
3300032205Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05EnvironmentalOpen in IMG/M
3300033433Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF15MNEnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
deepsgr_012928402199352025SoilMSLNGKPTIDRIDHGVLPSNDLGRAHRFYSTFMGGELDHLTNLTIRGLNREVPQILFYTLANHKGWGLALQDFPIASTPARP
ICCgaii200_029877912228664021SoilMSANGKPTIDRIDHGVVPSNDLGRAHRFYGTFMGGEIDHLTNLNLRGLNREVPQIIFYTLANH
INPhiseqgaiiFebDRAFT_10143053013300000364SoilMTLNGKATIERIDHGVVPSNDLGRAHRFWGGFMGGEIDHLTNLNIRGLNREVPQ
F14TC_10114688413300000559SoilMSANGMPTIDRIDHGVIPSNDLGRAHRFYGTFMGGEIDHLTNLNLRGLNREVPQIVFYTLANHKGWGVAL
JGI11643J11755_1157379823300000787SoilMSANGKPTIDRIDHGVVPSNDLGRAHRFYGTFMGGEIDHLTNLNLRGLNREVPQIIFYTLANHKGWGVALQDFPISPNPA
JGI11643J12802_1114747213300000890SoilMSANGKPTIDRIDHGVVPSNDLGRAHRFYGTFMGGEIDHLTNLNLRGLNREVPQII
JGI10220J13317_1119346713300001139SoilMSANGKPTIDRIDHGVVPSNDLGRAHRFYGTFMGGEIDHLTNLNLRGLNREVPQIIFYTL
JGI24751J29686_1013497613300002459Corn, Switchgrass And Miscanthus RhizosphereMENGKPTIDRIDHGVLPSNDLGRAHRFYSTFMGGELDHLTNLNLRGLNREVPQIL
Ga0052254_101790213300003152SedimentMVSTDKVTIERIDHGVIPSNDLGRAHRFWGTFMGGVIDHLTNLNLRGLNREVP
JGI25405J52794_1004784923300003911Tabebuia Heterophylla RhizosphereMTTKTVTIERIDHGVIPSNDLGRAHRFWGGFMGGEIDHLTNLNIRGLNREVPQIIFYTLA
Ga0062594_10272811513300005093SoilMTANKTPTIDRIDHGVVPSNDLGRAHRFYSTFMGGGLDHLTNLNLRGLNREVPQILFYTLANHKGWGLALQDFPIAP
Ga0066677_1029475413300005171SoilMASTEKVTIERIDHGVVPSNDLGRAHRFWGSFMGGEIDHLTNLNIRGLNREVPQIIFYTLANHKGWGIALQDFPIS
Ga0066678_1048433113300005181SoilMSSNGKATIDRIDHGVLPSNDLGRAHRFYSTFMGGELDHLTNLTIRGLNREVPQILFYTLANHKGWGLALQDF
Ga0068993_1028648913300005183Natural And Restored WetlandsMATEKVTIERIDHGVIPSNDLGRAHRFWGTFMGGEIDHLTNLNIRGLNRE
Ga0066676_1008069233300005186SoilMASTEKVTIERIDHGVVPSNDLGRAHRFWGSFMGGEIDHLTNLNLRGLNREVPQIIFYTLANHRGWGIALQDFPISP
Ga0065705_1044977223300005294Switchgrass RhizosphereMATETITIERIDHGVIPSNDLGRAHRFWGTFMGGEIDHLTNLNIRGLNREVPQ
Ga0070666_1047425123300005335Switchgrass RhizosphereMSANGKPTIDRIDHGVLPSNDLGRAHRFYSTFMGGELDHLTNLNLRGLNREVPQILFYTLANHKGWGLALQDFPI
Ga0070691_1088691113300005341Corn, Switchgrass And Miscanthus RhizosphereMSVNGKPTIDRIDHGVVPSNDLGRAHRFYGGFMGGEIDHLTNLTIRGLNREVPQIVFYTLANHKGWGVALQDFPISPNPA
Ga0070711_10133555023300005439Corn, Switchgrass And Miscanthus RhizosphereMENGKPTIDRIDHGVLPSNDLGRAHRFYSTFMGGDLDHLTNLNLHGLNREVPQILFYTLANHKGWGLALQDFPIASTPTRPLE
Ga0070708_10123329113300005445Corn, Switchgrass And Miscanthus RhizosphereMENGKPTIDRIDHGVLPSNDLGRAHRFYSTFMGGELDHLTNLNLRGLNREVPQILFYTLANHKGWGLALQDFPI
Ga0070662_10008957113300005457Corn RhizosphereMENGKPTIDRIDHGVLPSNDLGRAHRFYSTFMGGELDHLTNLNLRGLNREVPQILFYTLANHKGWGLALQDFPIASTPA
Ga0070662_10058321523300005457Corn RhizosphereMRVNGKPTIDRIDHGVVPSNDLGRAHRFYGSFMGGEIDHLTNLTIRGLNREVPQIVFYTLAN
Ga0070679_10002452883300005530Corn RhizosphereMSANGKPTIDRIDHGVVPSNDLGRAHRFYSTFMGGELDHLTNLNLRGLNREVPQILFYTLANHK
Ga0066701_1059376323300005552SoilMSVNGAPTIERIDHGVVPSNDLGRAHRFYGTFMGGEIDHLTNLNLRGLNREVPQIIFYSLAN
Ga0066692_1040605223300005555SoilMSNNPTIERIDHGVVPSNDLGRAHRFWAGFMGGEIDHLTNLNIRGLNREVPQIIFYTLANHKGWGIAL*
Ga0066704_1040007623300005557SoilMSNNPTIERIDHGVVPSNDLGRAHRFWGSFMGGEIDHLTNLNIRGLNREVPQIIFYTLANHKGWGIALQ
Ga0066703_1029888423300005568SoilMENGKATIDRIDHGVLPSNDLGRAHRFYSTFMGGELDHFTNLTIRGLNREVPQILFYTLANHKGWGLALQDF
Ga0066905_10093455223300005713Tropical Forest SoilMAITDKPTIERIDHGVLPSNDLGRAHRFYSTFMGGELDHLTNLNIRGLNREVPQILFYTLANHRGWGIALQDFPL
Ga0066696_1102427113300006032SoilMSVNGKPTIDRIDHGVLPSNDLGRAHRFYSTFMGGDLDHLTNLTIRGLNREVPQILFYTLANHKGWGLALQDFPIS
Ga0066656_1113621713300006034SoilMASTEKVTIERIDHGVVPSNDLGRAHRFWGSFMGGEIDHLTNLNLRGLNREVPQIIFYTLAN
Ga0075417_1005108033300006049Populus RhizosphereMATNDKVTIERIDHGVVPSNDLGRAHRFWGSFMGGEIDHLTNLNIRGLNREV
Ga0075417_1019523823300006049Populus RhizosphereMSVNGAPTIERIDHGVVPSNDLGRAHRFYGTFMGGEIDHLTNLNLRGLNREVPQIVFYTLANHKGWGVAL
Ga0075432_1058721423300006058Populus RhizosphereMGPTEKVTIERIDHGVVPSNDLGRAHRFWGGFMGGEIDHLTNLNIRGLNREVPQIVFYTL
Ga0068871_10010594713300006358Miscanthus RhizosphereMENGKPTIDRIDHGVLPSNDLGRAHRFYSTFMGGELDHLTNLNLRGLNREVPQILFYTLANHKGWG
Ga0066660_1033209923300006800SoilMSNNPTIERIDHGVVPSNDLGRAHRFWGSFMGGEIDHLTNLNIRGLNREVPQIIFYTLANHK
Ga0079220_1081328923300006806Agricultural SoilMENGKPTIDRIDHGVLPSNDLGRAHRFYSTFMGGELDHLTNLNLRGLNREVPQILFYTLANHKGWGVALQDFPIAST
Ga0075428_10232020913300006844Populus RhizosphereMENGKPTIDRIDHGVLPSNDLGRAHRFYSTFMGGELDHLTNLNLRGLNREVPQILFYTLANHK
Ga0075433_1169979823300006852Populus RhizosphereMGPTEKVTIERIDHGVVPSNDLGRAHRFWGGFMGGEIDHLTNLNIRGLNREVPQIVFYTLANHKGWGVALQDFPIS
Ga0075434_10222039623300006871Populus RhizosphereMGPTEKVMIERIDHGVVPSNDLGRAHRFWGGFMGGEIDHLTNLNIRGLNREVPQIVFYTLANHKGWGVALQDFPIS
Ga0075424_10026185413300006904Populus RhizosphereMGPSEKVTIERIDHGVVPSNDLGRAHRFWGGFMGGEIDHLTNFNLRGLNREVPQIVF
Ga0075424_10040198133300006904Populus RhizosphereMENEKVTIERIDHGVIPSNDLGRAHRFWGTFMGGEIDHLTNLNIRGL
Ga0075436_10001578063300006914Populus RhizosphereMATETVTIERIDHGVVPSNDLGRAHRFWGGFMGGEIDHLTNLNIRGLNREVPQIVFYTLANHKGWGVALQDFPIS
Ga0079219_1002643533300006954Agricultural SoilMENGKPTIDRIDHGVLPSNDLGRAHRFYSTFMGGELDHLTNLNLRGLNREVPQILFYTLA
Ga0099791_1056907923300007255Vadose Zone SoilMENEKVTIERIDHGVIPSNDLGRAHRFWGTFMGGEIDHLTNLNIRGLNREVPQIVFYT
Ga0105245_1110139113300009098Miscanthus RhizosphereMSANGKPTIDRIDHGVLPSNDLGRAHRFYSTFMGGELDHLTNLNLRGLNREV
Ga0066709_10163741723300009137Grasslands SoilVASTEKVTIERIDHGVVPSNDLGRAHRFWAGFMGGEIDHLTNLNIRGLNREV
Ga0114129_1054838533300009147Populus RhizosphereMVPTNKPTIERIDHGVLPSNDLGRAHRFYSTFMGGELDHLTNLTIRGLNREVPQILF
Ga0114129_1125181913300009147Populus RhizosphereMPTEKPTIERIDHGVVPSNDLGRAHRFWAGFMGGEIDHLTNLNLRGLNREVPQIVFYTLA
Ga0105092_1010817913300009157Freshwater SedimentMNMAPSEKVTIERIDHGVIPSNDLGRAHRFWGIFMGGEIDHLTNLNIRGLNREVPQIV
Ga0075423_1253461123300009162Populus RhizosphereMAIETVTIERIDHGVIPSNDLGRAHRFWGSFMGGEIDHLTNLNIRGLNREVP
Ga0105104_1017127013300009168Freshwater SedimentMNMAPIENVTIERIDHGVIPSNDLGRAHRFWGSFMGGEIDHLTNLNIRGLNREVPQIVFYTLANHKGW
Ga0105061_101002713300009807Groundwater SandMATTEKVTIERIDHGVIPSNDLGRAHRFWGGFMGGEIDHLTNLNIRGLNRE
Ga0105068_109944313300009836Groundwater SandMSTTAKPTIERIDHGVVPSNDLGRAHRFWGSFMGGEIDHLTNLNIRGLNREVPQIVFYTL
Ga0126380_1118818923300010043Tropical Forest SoilMTSKTVTIERIDHGVVPSNDLGRAHRFWATFMGGEIDHLTNLNIRGLNREVPQIIFYTLANHKGWGVALQDFPIS
Ga0126382_1068619513300010047Tropical Forest SoilMTSKTVTIERIDHGVVPSNDLGRAHRFWATFMGGEIDHLTNLNIRGLNREVPQIIFYTLANHKGWGVALQ
Ga0126370_1212552523300010358Tropical Forest SoilMGGEMASTNRVTIERIDHGVVPSNDLGRAHRFWGGFMGGEIDHLTNLNLRGLNREVPQIVFYTLANHKGWGVALQDFPIS
Ga0137429_107659333300011437SoilMATTEKVTIERIDHGVVPSNDLGRAHRFWGGFMGGEIDHLTNLNIRGLN
Ga0137351_103701923300012140SoilMATTEKVTIERIDHGVVPSNDLGRAHRFWGGFMGGEIDHLTNLNIRGLNREVPQ
Ga0137353_107680523300012157SoilMATRGKPTIERIDHGVIASNDLGRAHRFYGTFMGGEIDHLTNLTIRGLNREVPQIVFYTLANHKGWGVALQDFPIS
Ga0137378_1176737113300012210Vadose Zone SoilMSVNGAPTIERIDHGVVPSNDLGRAHRFYGTFMGGEIDHLTNLNLRGLNREVPQIIFYTLANHK
Ga0137370_1007923033300012285Vadose Zone SoilMSSNEKPTIDRIDHGVVPSNDLGRAHRFYSTFMGGELDHLTNLTIRCLNNEAAPIEIYTLAQHDALRSSAPRS
Ga0137372_1080315723300012350Vadose Zone SoilMGPTEKVTIERIDHGVVPSNDLGRAHRFWGSFMGGEIDHLTNLNIRGLNREVPQI
Ga0137375_1139030523300012360Vadose Zone SoilMSANGKPTIDRIDHGVVPSNDLGRAHRFYGTFMGGEIDHLTNLNLRGLNREVPQIVFYTLANHKGWGVALQDF
Ga0157333_100539923300012484SoilMSLNGKPTIDRIDHGVLPSNDLGRAHRFYSTFMGGELDHLTNLTIRGLNREV
Ga0157299_1002235023300012899SoilMENGKPTIDRIDHGVLPSNDLGRAHRFYSTFMGGELDHLTNLNLRGLNREVP
Ga0137416_1095629323300012927Vadose Zone SoilMSSNGKATIDRIDHGVLPSNDLGRAHRFYSTFMGGELDHLTNLTIRGLNREVPQILFY
Ga0164304_1026711213300012986SoilMQKSLRRLDMSLNGKPTIDRIDHGVLPSNDLGRAHRFYSTFMGGELDHLTNLTIRGLNREVPQILFYTLANHKGWGLALQDF
Ga0163162_1023021713300013306Switchgrass RhizosphereMSLNGKPTIDRIDHGVLPSNDLGRAHRFYSTFMGGELDHLTNLTIRGLNRE
Ga0157375_1024558233300013308Miscanthus RhizosphereMSANGKPTIDRIDHGVLPSNDLGRAHRFYSTFMGGELDHLTNLNLRGLNREVPQILFYTLANHKGWGLALQDFPIASTP
Ga0137409_1045254113300015245Vadose Zone SoilMSSNGKATIDRIDHGVLPSNDLGRAHRFYSTFMGGELDHLTNLTIRGLNREVPQILFYTLANHKG
Ga0182007_1020610723300015262RhizosphereMKNGKATIDRIDHGVLPSNDLGRAHRFYSTFMGGELDHLTNLNLRGLNREVPEILFYTLANHKGWGLALQDFPIASPPTRPLEGIV
Ga0132257_10071194623300015373Arabidopsis RhizosphereMSHSKEELKMENGKPTIDRIDHGVLPSNDLGRAHRFYSTFMGGELDHLTNLNLRGLNREVPQILFYT
Ga0132257_10379923513300015373Arabidopsis RhizosphereMSHSQEELKMENGKPTIDRIDHGVLPSNDLGRAHRFYSTFMGGELDHLTNLNLRGLNREVPQILFYTLANHKGWGLALQD
Ga0182037_1029526423300016404SoilMILINGKATIERIDHGVVPSNDLGRAHRFWGGFMGGEIDHLTNLNVRGLNREVPQIVFYTLA
Ga0187786_1010676413300017944Tropical PeatlandMAFTHKPTIERIDHGVVPSNDLGRAHRFYSTFMGGELDHLTNLNIRGLNREVPQILF
Ga0184634_1003438233300018031Groundwater SedimentMAITDKPTIDRIDHGVIPSNDLGRAHRFYGTFMGGEIDHLTNLTIRGLNREVPQIVFYTLANHKGWGVALQDFPISPN
Ga0184620_1004156223300018051Groundwater SedimentMGTSDKPTIDRIDHGVIPSNDLGRAHRFYGTFMGGEIDHLTNLTIRGLNREVPQIVFYTLANHKGWGVALQDFPI
Ga0184617_102163723300018066Groundwater SedimentMSLNDKPSIDRIDHGVIPSNDLGRAHRFYGSFMGGEIDHLTNLTIRGLNREVPQIVFY
Ga0184617_124849323300018066Groundwater SedimentMGTSDKPTIDRIDHGVIPSNDLGRAHRFYGTFMGGEIDHLTNLNLRGLNREVPQIVFY
Ga0184635_1016170413300018072Groundwater SedimentMATETITIDRIDHGVIPSNDLGRAHRFWGTFVGGEIDHLTNLNIRGLNREVQQIVFY
Ga0184627_1036848123300018079Groundwater SedimentMAITDKPTIDRIDHGVIPSNDLGRAHRFYGTFMGGAIDHLTNLTIRGLNREVPQILFYTL
Ga0184639_1004395613300018082Groundwater SedimentMATNGNPTIERIDHGVIPSNDLGRAHRFWGTFMGGEIDHLTNLNLRGLNREVPQIVFYTLANHKGWGVALQDFPI
Ga0137408_105292913300019789Vadose Zone SoilMSVNGAPTIERIDHGVVPSNDLGRAHRFYGTFMGGEIDHLTNLNLRGLNREVPQIIFYTLANHKGWGVALQDFPIFRRIPRAPWK
Ga0193703_106143923300019876SoilMSLNGKPTIDRIDHGVLPSNDLGRAHRFYSTFMGGELDHLTNLTIRGLNREVPQILFYTL
Ga0193710_102136323300019998SoilMSLNGKPTIDRIDHGVLPSNDLGRAHRFYSTFMGGELDHLTNLTIRGLNREVPQILFYTLANHKGWGLALQDFP
Ga0193749_100511113300020010SoilMENGKATIDRIDHGVLPSNDLGRAHRFYSTFMGGELDHLTNLTIRGLNREVPQILFYTLANHMG
Ga0210382_1020361913300021080Groundwater SedimentMSANGRPTIERIDHGVIPSNDLGRAHRFYGTFMGGEIDHLTNLNLRGLNREVPQIIFYTLANHKGWGVALQDFPIS
Ga0210379_1026354823300021081Groundwater SedimentMAPTETVTIDRIDHGVIPSNDLGRAHRFWGTFMGGEIDHLTNLNIRGLNREVP
Ga0210404_1054948223300021088SoilMAIDGKVTIERIDHGVVPSNDLGRAHRFWAGFMGGEIDHLTNLNLRGLNREVPQIIFYTLANHKGWGVALQD
Ga0207680_1124848213300025903Switchgrass RhizosphereMSANGKPTIDRIDHGVLPSNDLGRAHRFYSTFMGGELDHLTNLNLRGLNREVPQILFYTLANHKGWGLALQDFPIAS
Ga0207680_1135645513300025903Switchgrass RhizosphereMENGKPTIDRIDHGVLPSNDLGRAHRFYSTFMGGDLDHLTNLNLRGLNREVPQILFYTLANHKGWGL
Ga0207684_1053199413300025910Corn, Switchgrass And Miscanthus RhizosphereMSSNGKPTIDRIDHGVLPSNDLGRAHRFYSTFMGGELDHLTNLTIRGLN
Ga0207684_1074718823300025910Corn, Switchgrass And Miscanthus RhizosphereMAIDGKVTIERIDHGVVPSNDLGRAHRFWAGFMGGEIDHLTNLNLRGLNREVPQIIFYTL
Ga0207707_1038301813300025912Corn RhizosphereMSANGKPTIDRIDHGVVPSNDLGRAHRFYSTFMGGELDHLTNLNLRGLNREVPQILFYT
Ga0207681_1007842413300025923Switchgrass RhizosphereMENGKPTIDRIDHGVLPSNDLGRAHRFYSTFMGGELDHLTNLNLRGLNREVPQILFYTLANHKGWGLALQDFPIAS
Ga0207650_1009698013300025925Switchgrass RhizosphereMENGKPTIDRIDHGVLPSNDLGRAHRFYSTFMGGELDHLTNLNLRGLNREVPQILF
Ga0207661_1102005313300025944Corn RhizosphereMENGKPTIDRIDHGVLPSNDLGRAHRFYSTFMGGELDHLTNLNLRGLNREVPQILFY
Ga0209806_126825123300026529SoilMENGKATIDRIDHGVLPSNDLGRAHRFYSTFMGGELDHFTNLTIRGLNREVPQILFYTLANHKGWGLALQDFPIASTP
Ga0209058_103812343300026536SoilMASTEKVTIERIDHGVVPSNDLGRAHRFWGSFMGGEIDHLTNLNLRGLNREVPQIIFYTLANHRGW
Ga0209376_114597823300026540SoilVASTEKVTIERIDHGVVPSNDLGRAHRFWAGFMGGEIDHLTNLNIRGLNREVPQIIFYTLANH
Ga0207826_117463813300027680Tropical Forest SoilMSSNSRPTVERIDHGVLPSNDLGRAHRFWGAFMGGEIDHLTNLNIRGLNREVPQIVFYTLANHRGWGIALQ
Ga0209485_101192833300027691Agricultural SoilMSANGKPTIDRIDHGVIPSNDLGRSHRFYGTFMGGEIDHLTNLNLRGLNREVPQI
Ga0209819_1016924913300027722Freshwater SedimentMATTETVTIERIDHGVIPSNDLGRAHRFWGGFMGGEIDHLTNLNIRGLNREVPQ
Ga0209382_1216715123300027909Populus RhizosphereMSANGKPTIDRIDHGVIPSNDLGRAHRFYGTFMGGEIDHLTNLNLRGLNREVPQIVFYTLANHK
Ga0209820_114035713300027956Freshwater SedimentMATEKVTIERIDHGVIPSNDLGRAHRFWGGFMGGEIDHLTNLNIRGLNREVPQIVFYTLANHKGWG
Ga0307499_1013729823300031184SoilMSLNGKPTIDRIDHGVLPSNDLGRAHRFYSTFMGGELDHLTNLTIRGLNREVPQILFYTLANHKGWG
Ga0310813_1054157413300031716SoilMTANKTPTIDRIDHGVVPSNDLGRAHRFYSTFMGAGLDHLTNLNLRGLNREVPQILFYTLANHKGWGLALQDFPIAPEPA
Ga0307468_10095499413300031740Hardwood Forest SoilMANDGKVTIERIDHGVVPSNDLGRAHRFWAGFMGGEIDHLTNLNLRGLNREVPQIIFYTLANHKGWG
Ga0310892_1069955613300031858SoilMTNGKPTIDRIDHGVLPSNDLGRAHRFYSTFMGGDLDHLTNLNLRGLNREVPQILFYTLA
Ga0310885_1088270513300031943SoilMSLNGKPTIDRIDHGVLPSNDLGRAHRFYSTFMGGELDHLTNLTIRGLNREVPQILF
Ga0310909_1119893813300031947SoilMRTNGIPTIDRIDHGVVPSNDLGRAHRFYSTFMGGELDHLTNLNLRVLNREVPQILFYTLANHKGWGLALQDFPIASTPA
Ga0307479_1035425313300031962Hardwood Forest SoilMTPTDKVTIERIDHGVVPSNDLGRAHRFWAGFMGGEIDHLTNLNLRGLNREVPQIIFYTLANHKGWGVALQDFP
Ga0307471_10075007823300032180Hardwood Forest SoilMAEKATIERIDHGVVPSNDLGRAHRFWAGFMGGEIDHLTNLNLRGLNREVPQIIF
Ga0307472_10217235323300032205Hardwood Forest SoilMAIDGKVTIERIDHGVVPSNDLGRAHRFWAGFMGGEIDHLTNLNLRGLNREVPQIIFYTLANHKGWGVALQDFAISPTPAR
Ga0326726_1111020913300033433Peat SoilMATEKITIERIDHGVIPSNDLGRAHRFWGSFMGGEIDHLTNLNLRGLNREVPQIVFYTLANHKGWGVALQDFPISSTP


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