Metagenome / Metatranscriptome Family F080017

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F080017
Family Type	Metagenome / Metatranscriptome
Number of Sequences	115
Average Sequence Length	66 residues
Representative Sequence	MTEDDAARGLPTCPATYLLRDGIPVCTTCGAVIGGADADQIRHSTWHTTLAALFAVADPKDPVDQDR
Number of Associated Samples	80
Number of Associated Scaffolds	115

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	85.22 %
% of genes near scaffold ends (potentially truncated)	36.52 %
% of genes from short scaffolds (< 2000 bps)	93.91 %
Associated GOLD sequencing projects	78
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.53

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (69.565 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil (20.870 % of family members)
Environment Ontology (ENVO)	Unclassified (30.435 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (56.522 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 27.37% β-sheet: 9.47% Coil/Unstructured: 63.16%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.53
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.53
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 115 Family Scaffolds
PF13683	rve_3	2.61
PF12900	Pyridox_ox_2	1.74
PF13466	STAS_2	1.74
PF16859	TetR_C_11	0.87
PF07681	DoxX	0.87
PF08031	BBE	0.87
PF05598	DUF772	0.87
PF01740	STAS	0.87
PF00872	Transposase_mut	0.87
PF05048	NosD	0.87
PF13276	HTH_21	0.87
PF00171	Aldedh	0.87
PF13565	HTH_32	0.87
PF01594	AI-2E_transport	0.87
PF08240	ADH_N	0.87
PF01548	DEDD_Tnp_IS110	0.87
PF07883	Cupin_2	0.87

COG ID	Name	Functional Category	% Frequency in 115 Family Scaffolds
COG0014	Gamma-glutamyl phosphate reductase	Amino acid transport and metabolism [E]	0.87
COG0277	FAD/FMN-containing lactate dehydrogenase/glycolate oxidase	Energy production and conversion [C]	0.87
COG0628	Predicted PurR-regulated permease PerM	General function prediction only [R]	0.87
COG1012	Acyl-CoA reductase or other NAD-dependent aldehyde dehydrogenase	Lipid transport and metabolism [I]	0.87
COG2259	Uncharacterized membrane protein YphA, DoxX/SURF4 family	Function unknown [S]	0.87
COG3328	Transposase (or an inactivated derivative)	Mobilome: prophages, transposons [X]	0.87
COG3547	Transposase	Mobilome: prophages, transposons [X]	0.87
COG4230	Delta 1-pyrroline-5-carboxylate dehydrogenase	Amino acid transport and metabolism [E]	0.87
COG4270	Uncharacterized membrane protein	Function unknown [S]	0.87

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.57 %
All Organisms	root	All Organisms	30.43 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.57 %
cellular organisms	root	All Organisms → cellular organisms	30.43 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.57 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	30.43 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.57 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	24.35 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.57 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	23.48 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.57 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	17.39 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.57 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	4.35 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	2.61 %
Geodermatophilales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales	0.87 %
Propionibacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	0.87 %
Micromonosporales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales	0.87 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.57 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	4.35 %
Mycobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	1.74 %
Geodermatophilaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae	0.87 %
Nocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae	0.87 %
Nocardioidaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae	0.87 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	0.87 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.57 %
Pseudonocardia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia	4.35 %
unclassified Geodermatophilaceae	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → unclassified Geodermatophilaceae	0.87 %
Nocardioides	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides	0.87 %
Rhodococcus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Rhodococcus	0.87 %
Mycobacterium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium	0.87 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	0.87 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.57 %
Pseudonocardia terrae	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → Pseudonocardia terrae	0.87 %
Geodermatophilaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → unclassified Geodermatophilaceae → Geodermatophilaceae bacterium	0.87 %
unclassified Nocardioides	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → unclassified Nocardioides	0.87 %
unclassified Rhodococcus	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Rhodococcus → unclassified Rhodococcus	0.87 %
Mycobacterium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium	0.87 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	0.87 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.57 %
Nocardioides sp. OK12	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → unclassified Nocardioides → Nocardioides sp. OK12	0.87 %
Rhodococcus sp.	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Rhodococcus → unclassified Rhodococcus → Rhodococcus sp.	0.87 %
Pseudonocardia terrae	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → Pseudonocardia terrae	0.87 %
Geodermatophilaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → unclassified Geodermatophilaceae → Geodermatophilaceae bacterium	0.87 %
Mycobacterium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium	0.87 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	0.87 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.87 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001686\|C688J18823_10703384	Not Available	643	Open in IMG/M
3300004081\|Ga0063454_100997345	Not Available	673	Open in IMG/M
3300004463\|Ga0063356_103407249	Not Available	685	Open in IMG/M
3300005164\|Ga0066815_10060787	All Organisms → cellular organisms → Bacteria	644	Open in IMG/M
3300005337\|Ga0070682_100995730	Not Available	695	Open in IMG/M
3300005347\|Ga0070668_100119791	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2102	Open in IMG/M
3300005616\|Ga0068852_102725954	Not Available	513	Open in IMG/M
3300005616\|Ga0068852_102801835	Not Available	506	Open in IMG/M
3300005834\|Ga0068851_10475796	Not Available	746	Open in IMG/M
3300005843\|Ga0068860_102723223	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium	513	Open in IMG/M
3300006574\|Ga0074056_11623368	Not Available	735	Open in IMG/M
3300006575\|Ga0074053_11653219	Not Available	519	Open in IMG/M
3300006605\|Ga0074057_11638844	Not Available	686	Open in IMG/M
3300006844\|Ga0075428_102711336	Not Available	505	Open in IMG/M
3300007790\|Ga0105679_10690736	Not Available	1000	Open in IMG/M
3300009100\|Ga0075418_11304540	Not Available	787	Open in IMG/M
3300009148\|Ga0105243_11869997	Not Available	633	Open in IMG/M
3300009156\|Ga0111538_11108207	Not Available	1001	Open in IMG/M
3300009156\|Ga0111538_11704672	Not Available	794	Open in IMG/M
3300009545\|Ga0105237_12155029	Not Available	567	Open in IMG/M
3300010039\|Ga0126309_10777786	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	623	Open in IMG/M
3300010044\|Ga0126310_10387791	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	991	Open in IMG/M
3300010044\|Ga0126310_10981399	Not Available	664	Open in IMG/M
3300010373\|Ga0134128_11488827	Not Available	745	Open in IMG/M
3300010397\|Ga0134124_11317588	Not Available	746	Open in IMG/M
3300011107\|Ga0151490_1378572	Not Available	511	Open in IMG/M
3300011107\|Ga0151490_1470326	Not Available	575	Open in IMG/M
3300012212\|Ga0150985_101822458	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia	1143	Open in IMG/M
3300012212\|Ga0150985_111795052	Not Available	716	Open in IMG/M
3300012212\|Ga0150985_120472555	All Organisms → cellular organisms → Bacteria	782	Open in IMG/M
3300012469\|Ga0150984_116643053	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia	653	Open in IMG/M
3300012469\|Ga0150984_121741806	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → Pseudonocardia terrae	1448	Open in IMG/M
3300012473\|Ga0157340_1019814	Not Available	559	Open in IMG/M
3300012476\|Ga0157344_1002117	Not Available	1024	Open in IMG/M
3300012477\|Ga0157336_1009145	Not Available	733	Open in IMG/M
3300012487\|Ga0157321_1001642	Not Available	1166	Open in IMG/M
3300012488\|Ga0157343_1026890	Not Available	557	Open in IMG/M
3300012489\|Ga0157349_1012363	Not Available	709	Open in IMG/M
3300012494\|Ga0157341_1001432	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1446	Open in IMG/M
3300012498\|Ga0157345_1061662	Not Available	500	Open in IMG/M
3300012503\|Ga0157313_1066543	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	504	Open in IMG/M
3300012508\|Ga0157315_1030367	Not Available	631	Open in IMG/M
3300012905\|Ga0157296_10215225	Not Available	623	Open in IMG/M
3300012907\|Ga0157283_10118422	Not Available	737	Open in IMG/M
3300012909\|Ga0157290_10146094	Not Available	753	Open in IMG/M
3300012955\|Ga0164298_11014838	Not Available	614	Open in IMG/M
3300012961\|Ga0164302_10379492	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	956	Open in IMG/M
3300012988\|Ga0164306_10172634	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1494	Open in IMG/M
3300012988\|Ga0164306_10533295	Not Available	908	Open in IMG/M
3300013296\|Ga0157374_11207795	Not Available	777	Open in IMG/M
3300013296\|Ga0157374_11878256	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia	625	Open in IMG/M
3300013306\|Ga0163162_11546680	Not Available	756	Open in IMG/M
3300013307\|Ga0157372_12383175	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia	608	Open in IMG/M
3300014968\|Ga0157379_10788470	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	896	Open in IMG/M
3300015371\|Ga0132258_10126561	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	6083	Open in IMG/M
3300015371\|Ga0132258_10723806	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Rhodococcus → unclassified Rhodococcus → Rhodococcus sp.	2506	Open in IMG/M
3300015371\|Ga0132258_11179123	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1936	Open in IMG/M
3300015371\|Ga0132258_11230205	Not Available	1893	Open in IMG/M
3300015371\|Ga0132258_11454293	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → unclassified Geodermatophilaceae → Geodermatophilaceae bacterium	1731	Open in IMG/M
3300015371\|Ga0132258_11945640	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1480	Open in IMG/M
3300015371\|Ga0132258_12991884	Not Available	1172	Open in IMG/M
3300015371\|Ga0132258_13969816	Not Available	1004	Open in IMG/M
3300015372\|Ga0132256_100179445	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2151	Open in IMG/M
3300015372\|Ga0132256_100856821	Not Available	1025	Open in IMG/M
3300015372\|Ga0132256_103105501	Not Available	558	Open in IMG/M
3300015373\|Ga0132257_102961117	Not Available	619	Open in IMG/M
3300015374\|Ga0132255_100472619	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1838	Open in IMG/M
3300015374\|Ga0132255_101004571	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → unclassified Nocardioides → Nocardioides sp. OK12	1251	Open in IMG/M
3300015374\|Ga0132255_104235714	Not Available	608	Open in IMG/M
3300015374\|Ga0132255_104937599	Not Available	565	Open in IMG/M
3300017965\|Ga0190266_11171285	Not Available	530	Open in IMG/M
3300018081\|Ga0184625_10384947	Not Available	725	Open in IMG/M
3300018433\|Ga0066667_11328970	Not Available	629	Open in IMG/M
3300018476\|Ga0190274_11108376	Not Available	871	Open in IMG/M
3300018481\|Ga0190271_10535947	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1285	Open in IMG/M
3300018481\|Ga0190271_13341055	Not Available	538	Open in IMG/M
3300018920\|Ga0190273_10014816	All Organisms → cellular organisms → Bacteria	3346	Open in IMG/M
3300018920\|Ga0190273_10896246	Not Available	717	Open in IMG/M
3300018920\|Ga0190273_12000912	Not Available	536	Open in IMG/M
3300019362\|Ga0173479_10451382	All Organisms → cellular organisms → Bacteria	635	Open in IMG/M
3300025321\|Ga0207656_10090285	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1390	Open in IMG/M
3300025901\|Ga0207688_10268688	Not Available	1037	Open in IMG/M
3300025901\|Ga0207688_10395397	Not Available	857	Open in IMG/M
3300025911\|Ga0207654_10989226	Not Available	611	Open in IMG/M
3300025925\|Ga0207650_11305671	Not Available	618	Open in IMG/M
3300025926\|Ga0207659_11766198	Not Available	526	Open in IMG/M
3300026089\|Ga0207648_10420603	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1213	Open in IMG/M
3300026118\|Ga0207675_102272625	All Organisms → cellular organisms → Bacteria	556	Open in IMG/M
3300028379\|Ga0268266_11043624	Not Available	791	Open in IMG/M
3300028592\|Ga0247822_10937311	Not Available	712	Open in IMG/M
3300028596\|Ga0247821_10053353	All Organisms → cellular organisms → Bacteria	2209	Open in IMG/M
3300028596\|Ga0247821_10154674	Not Available	1331	Open in IMG/M
3300028597\|Ga0247820_10345330	Not Available	984	Open in IMG/M
3300028597\|Ga0247820_10419198	Not Available	899	Open in IMG/M
3300028812\|Ga0247825_10145630	Not Available	1622	Open in IMG/M
3300028812\|Ga0247825_10324865	Not Available	1078	Open in IMG/M
3300030336\|Ga0247826_10450784	Not Available	962	Open in IMG/M
3300030336\|Ga0247826_11399590	Not Available	565	Open in IMG/M
3300031562\|Ga0310886_10908568	Not Available	560	Open in IMG/M
3300031847\|Ga0310907_10359586	Not Available	749	Open in IMG/M
3300031847\|Ga0310907_10798381	Not Available	528	Open in IMG/M
3300031892\|Ga0310893_10020174	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	1952	Open in IMG/M
3300031938\|Ga0308175_100019551	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	5366	Open in IMG/M
3300031938\|Ga0308175_101884983	Not Available	670	Open in IMG/M
3300031938\|Ga0308175_103109488	Not Available	516	Open in IMG/M
3300031939\|Ga0308174_10203932	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1510	Open in IMG/M
3300031939\|Ga0308174_11381321	Not Available	603	Open in IMG/M
3300031940\|Ga0310901_10386737	Not Available	607	Open in IMG/M
3300031996\|Ga0308176_10283427	Not Available	1606	Open in IMG/M
3300032012\|Ga0310902_10082091	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1675	Open in IMG/M
3300032075\|Ga0310890_10893447	Not Available	709	Open in IMG/M
3300032080\|Ga0326721_10272829	Not Available	930	Open in IMG/M
3300032080\|Ga0326721_10776856	Not Available	598	Open in IMG/M
3300033550\|Ga0247829_10768550	Not Available	802	Open in IMG/M
3300033550\|Ga0247829_11591282	Not Available	539	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	51.30%
Host-Associated	Host-Associated	48.70%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	50.43%
Plants	Host-Associated → Plants	48.70%
Aquatic	Environmental → Aquatic	0.87%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	50.43%
Rhizoplane	Host-Associated → Plants → Rhizoplane	31.30%
Rhizosphere	Host-Associated → Plants → Rhizosphere	17.39%
Sediment	Environmental → Aquatic → Sediment	0.87%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	46.96%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	17.39%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	13.91%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	9.57%
Soil	Host-Associated → Plants → Rhizosphere → Soil	7.83%
Loam	Environmental → Terrestrial → Soil → Loam	2.61%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.87%
Sand	Environmental → Terrestrial → Soil → Sand	0.87%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	25.22%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	20.87%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	17.39%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	13.91%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	9.57%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	7.83%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.74%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.87%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.87%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.87%
Desert	Environmental → Terrestrial → Soil → Sand → Desert	0.87%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	20.87%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	14.78%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	11.30%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	7.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	5.22%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	3.48%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	3.48%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	2.61%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	2.61%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	2.61%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	2.61%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.74%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.74%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.74%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	1.74%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.74%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.74%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	1.74%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.87%
Unplanted Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Unplanted Soil	0.87%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.87%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.87%
Soil	Environmental → Terrestrial → Soil → Sand → Desert → Soil	0.87%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.87%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.87%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.87%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.87%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.87%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.87%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.87%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001686	Grasslands soil microbial communities from Hopland, California, USA	Environmental	Open in IMG/M
3300004081	Grasslands soil microbial communities from Hopland, California, USA - 2 (version 2)	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300005164	Soil and rhizosphere microbial communities from Laval, Canada - mgLAC	Environmental	Open in IMG/M
3300005337	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG	Environmental	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005616	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2	Host-Associated	Open in IMG/M
3300005834	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2	Host-Associated	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300006574	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHAA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006575	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLAA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006605	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHAB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300007790	Microbial communities of desert soil contaminated with blood from dead anthrax infected zebra in Etosha National Park, Namibia. Combined Assembly of 14 sequencing projects	Environmental	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300010039	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot56	Environmental	Open in IMG/M
3300010044	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot60	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300011107	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHAC (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012473	Arabidopsis rhizosphere microbial communities from North Carolina - M.Cvi.12.yng.090610	Host-Associated	Open in IMG/M
3300012476	Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.6.yng.070610	Host-Associated	Open in IMG/M
3300012477	Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.3.yng.040610	Host-Associated	Open in IMG/M
3300012487	Arabidopsis rhizosphere microbial communities from North Carolina - M.Cvi.4.old.130510	Host-Associated	Open in IMG/M
3300012488	Arabidopsis rhizosphere microbial communities from North Carolina - M.Cvi.4.yng.030610	Host-Associated	Open in IMG/M
3300012489	Unplanted soil (control) microbial communities from North Carolina - M.Soil.5.yng.040610	Environmental	Open in IMG/M
3300012494	Arabidopsis rhizosphere microbial communities from North Carolina - M.Cvi.2.yng.030610	Host-Associated	Open in IMG/M
3300012498	Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.3.yng.090410	Host-Associated	Open in IMG/M
3300012503	Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.5.old.080610_R	Host-Associated	Open in IMG/M
3300012508	Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.2.old.270510	Host-Associated	Open in IMG/M
3300012905	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S013-104B-2	Environmental	Open in IMG/M
3300012907	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S044-104R-1	Environmental	Open in IMG/M
3300012909	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S149-409B-1	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017965	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 220 T	Environmental	Open in IMG/M
3300018081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300018920	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 IS	Environmental	Open in IMG/M
3300019362	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S104-311B-1 (version 2)	Environmental	Open in IMG/M
3300025321	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025901	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes)	Host-Associated	Open in IMG/M
3300025911	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025925	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026089	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028379	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300028592	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Cellulose_Day30	Environmental	Open in IMG/M
3300028596	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glycerol_Day14	Environmental	Open in IMG/M
3300028597	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glucose_Day14	Environmental	Open in IMG/M
3300028812	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Vanillin_Day48	Environmental	Open in IMG/M
3300030336	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day1	Environmental	Open in IMG/M
3300031562	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D3	Environmental	Open in IMG/M
3300031847	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D4	Environmental	Open in IMG/M
3300031892	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D2	Environmental	Open in IMG/M
3300031938	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1	Environmental	Open in IMG/M
3300031939	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R2	Environmental	Open in IMG/M
3300031940	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D2	Environmental	Open in IMG/M
3300031996	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R2	Environmental	Open in IMG/M
3300032012	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D3	Environmental	Open in IMG/M
3300032075	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3	Environmental	Open in IMG/M
3300032080	Soil microbial communities from Southern Great Plains, Lamont, Oklahoma, United States - SGP_1_2016	Environmental	Open in IMG/M
3300033550	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day4	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
C688J18823_107033842	3300001686	Soil	YSGSSVDRGKVAEMTEDEAVRALPTCPPTYVRRDGLVCTVCGAVVGAADADQIRHTTWHTTLADLFARASSR*
Ga0063454_1009973451	3300004081	Soil	GLPRLPPTYMLRDGTPVCTTCGAVVGGAGADQIRHNTWHANLAGLFALADLTEPAGRPSKVR*
Ga0063356_1034072491	3300004463	Arabidopsis Thaliana Rhizosphere	MTEDEAARGLPTFPPTYMLRDGTPVCTTCGAVVGGAGPDQIRHSTWHANLAGLFALAGLTEPAGQPSKV
Ga0066815_100607871	3300005164	Soil	MTEDDAARGLPTCPATYLLRDGIPVCTTCGAVIGGADADQIRHSTWHTTLTALFA
Ga0070682_1009957301	3300005337	Corn Rhizosphere	ARGLPTCPATYLLRDDIPVCTTCGAVIGGADADQIRHSTWHTTLTALFAVADPHGPVDQGRGTF*
Ga0070668_1001197912	3300005347	Switchgrass Rhizosphere	MTEDDAARRLPTLPPTYTLRDGTPVCTTCGAVIGGTGADQIRHSTWHANLAGLYGICQPE
Ga0068852_1027259541	3300005616	Corn Rhizosphere	MTEDDAARRLPTLPPTYTLRDGTPVCTTCGAVIGGTGADQIRHSTWHANLAGLYALVDPNEPAGQPPKVR*
Ga0068852_1028018352	3300005616	Corn Rhizosphere	MAEDEAARALPTCPPTYIQRAGTLVCTTCGAVVGANDADQIRHTTWHTTLAELFALAQG
Ga0068851_104757962	3300005834	Corn Rhizosphere	MTEDDAARGLPTCPATYLLRDGIPVCTTCGAVIGGADADQIRHSTWHTTLTALFAVADPHDPSTNAG*
Ga0068860_1027232232	3300005843	Switchgrass Rhizosphere	RRPDMTEDDAARRLPTLPPTYTLRDGTPVCTTCGAVIGGTGADQIRHSTWHANLAGLYGICQPE*
Ga0074056_116233682	3300006574	Soil	MTEDDAARGLPTCPATYLLRDGIPVCTTCGAVIGGADADQIRHSTWHTTLTALFAAADPHDPPTKAG*
Ga0074053_116532191	3300006575	Soil	MTEDEAARGLPHFPPTYMLRDGTPVCTTCGAVIGGAGADQIRHSTWHANLAGLF
Ga0074057_116388442	3300006605	Soil	MTEDEAARGLPTFPPTYMLRDGTPVCTTCGAVVGGAGPDQIRHSTWHANLAGLFALAGLTEPAGQPSKVR*
Ga0075428_1027113361	3300006844	Populus Rhizosphere	MTEDDAARRLPTLPPTYTLRDGTPVCTTCGAVIGGTGADQIRHSTWHANLAGLYALVDPNEPAGRPPKV
Ga0105679_106907361	3300007790	Soil	MTEDDAARGLLTCPATYLLLDGIPVCTTHGAVVDGADADQLRHSTWHATLAALLAVD*
Ga0075418_113045402	3300009100	Populus Rhizosphere	MTEDDAARRLPTFPPTYMLRDGSHVCTTCGAVIGDADADQIRHNTWHATLAALFALVDPDEPAAGRLSTVH*
Ga0105243_118699971	3300009148	Miscanthus Rhizosphere	MTEDDAARGLPTCPATYLLRDGIPVCTTCGAVIGGADADQIRHSTWHTTLTALFAVTDPHSPVDQARRTFGPPRSRLGCGARSIKTHLS
Ga0111538_111082072	3300009156	Populus Rhizosphere	MTEDDAARGLPTLPPTYTLRDGTPVCTTCGAVIGGTGADQIRHSTWHANLAGLYALVDPNEPAGQPAKVR*
Ga0111538_117046721	3300009156	Populus Rhizosphere	MTEDDAARRLPTFPPTYMLRDGSHVCTTCGAVIGDADADQIRHNTWHATLAALFALVDPNEPAAGRPSTVH*
Ga0105237_121550291	3300009545	Corn Rhizosphere	MTEDDAARGLPTCPATYLLRDGIPVCTTCGAVIGGADADQIRHSTWHMTLA
Ga0126309_107777861	3300010039	Serpentine Soil	MTEDDAVPGLATFPPTYTLRGGIPVCTTCGAVIGNAGADQIRHSTWHANLTGLIALVKPDKPAGP*
Ga0126310_103877912	3300010044	Serpentine Soil	MAEDDAARGLPTCPATYLLRDGIPVCTTCGAVIGGADADQIRHSTWHTTLAALFAVADPRDPSTRAG*
Ga0126310_109813991	3300010044	Serpentine Soil	MTEDDAARGLPTCPATYRLRDGIPVCTTCGAVIGAADADQIRHSMWHTTLVALFAVADRIDPVDQDR*
Ga0134128_114888271	3300010373	Terrestrial Soil	MTEDDAARGLPTCPATYLLRDGIPVCTTCRAVIGGTDADQIRHSTWHTTLTALFAVADPHDPSTNAG*
Ga0134124_113175881	3300010397	Terrestrial Soil	MTEDDAARGLPTCPATYLLRDGIPVCTTCGAVIGGADADQIRHSTWHTTLTALFAVADPHGPVDQGRGTF*
Ga0151490_13785721	3300011107	Soil	MTEDEAARGLPTCPATYLLRDGIPVCTTCGAVIGGADADQIRHSTWHTTLTALFAATDPHGPPTNAG*
Ga0151490_14703261	3300011107	Soil	MAEDQAARALPTCPPTYMQRGGTLVCTTCGALIGGTEADQIRHTTWHTTLAELFALASSR
Ga0150985_1018224582	3300012212	Avena Fatua Rhizosphere	MTEDDAARGLPTCPATYLVRDGIPVCTTCGAVVGGADADQIRHSTWHTTLAALFAVAERRTPSPKAG*
Ga0150985_1117950522	3300012212	Avena Fatua Rhizosphere	MTEDDAARGLPTCPATYRLRDGIPVCTTCGAVIGAADADQIRHSTWHTTLAALFAVADPKDPVDQDR*
Ga0150985_1204725551	3300012212	Avena Fatua Rhizosphere	MTEDDAARGLPTCPATYRLRDGIPVCTTCGAVIGAADADQIRHSTWHTTLAALFAVADLHDPVVDDA*
Ga0150984_1166430532	3300012469	Avena Fatua Rhizosphere	MAEDDAARGLPTCPATYRLRDGIPVCTTCGAVIGAADADQIRHSTWHTTLAALFAVADLHAPVVDDA*
Ga0150984_1217418062	3300012469	Avena Fatua Rhizosphere	MTEDDAARGLPTCPATYRLRDGIPVCTTCGAVIGAADADQIRHSTWHTTLAALFAVPTCTTQSSTTPES*
Ga0157340_10198142	3300012473	Arabidopsis Rhizosphere	MTEDEAARGLPTCPATYLLRDGTPVCTTCGAAVGSTDADQIRHSAWHTTLADLFAVADAHRPVVQRR*
Ga0157344_10021172	3300012476	Arabidopsis Rhizosphere	MTEDEAARGLPTCPATYLLRDGAPVCTTCGAAVGGADADQIRHSTWHTALAALFA
Ga0157336_10091452	3300012477	Arabidopsis Rhizosphere	MTEDEAARGLPTCPATYLLRDGAPVCTTCGAVVGGTAPDQIRHSTWHTALAALFAVADAHRPAVYSRRQRGGPP*
Ga0157321_10016421	3300012487	Arabidopsis Rhizosphere	MTEDEAARGLPTCPATYLLRDGAPVCTTCGAVVGGTDSDQIRHSTWHTALAALFDVAAAHGPAV*
Ga0157343_10268901	3300012488	Arabidopsis Rhizosphere	MTEDEAARGLPTCPATYLLRDGVLVCTTCGAIVGGTDSDQIRHSTWHMSLAALFAMADARRPAVYGRRQRCGPP*
Ga0157349_10123631	3300012489	Unplanted Soil	GRRPPGMTEDEAARGLPTCPATYLLRDGALVCTTCGAAVGGTDSDQIRHSTWHSALAALFAVADAYRPAV*
Ga0157341_10014321	3300012494	Arabidopsis Rhizosphere	MTEDDAARRLPTLPPTYTLRDGTPVCTTCGALIGGTGADQIRHSTWHTNLASLFALVDDSAAQFRHAVV*
Ga0157345_10616621	3300012498	Arabidopsis Rhizosphere	MTEDEAARGLPTCPATYLLRDGAPVCTTCGALVGGTAPDQIRHSTWHAALAALFAVADAHRPA
Ga0157313_10665431	3300012503	Arabidopsis Rhizosphere	MTEDEAVRALPTCPPTYLHRGGTLACTTCGALIGATDADQIRHTTWHTTLAELFALARAR
Ga0157315_10303671	3300012508	Arabidopsis Rhizosphere	MTEDEAARGLPTCPATYLLRDGAPVCTTCGAVVGGADSEQIRHSTWHTALAVLFAVADAHRPAVHGR*
Ga0157296_102152251	3300012905	Soil	MTEDDAARGLPTCPATYLLRDGIPVCTTCGAVIGGADADQIRHSTWHTTLTALFAAADPHGPPTKAG*
Ga0157283_101184222	3300012907	Soil	MTEDDAARGLPTCPATYLLRDGIPVCTTCGAVIGGGDADQIRHSTWHTTLTALFAVADPHDPSTKAW*
Ga0157290_101460941	3300012909	Soil	MTEDDAARGLPTCPATYLLRDGIPVCTTCGAVIGGADADQIRHSTWHTTLTALFAVADPHGPVDQRRGTF*
Ga0164298_110148382	3300012955	Soil	MTEDDAARGLPTCPATYLLRAGIPVCTTCGAVIGGADADQIRHSTWHTTLTALFAVADPHGPTRGLRPGPAA*
Ga0164302_103794922	3300012961	Soil	MTEDEAARGLPTCPATYLLRDGAPVCTTCGAVVGGTAPDQIRHSTWHTALAALFAVADAHRPAGYGRRQRCGPP*
Ga0164306_101726344	3300012988	Soil	MTEDEAARGLPTCPATYLLRDGAPVCTTCGAAVGGTDADQIRHSTWHTALAALFATANAHRPAV*
Ga0164306_105332952	3300012988	Soil	MTEDDAARGLPTCPATYLLRDGIPVCTTCGAVIGGADADQIRHSTWHTTLT
Ga0157374_112077953	3300013296	Miscanthus Rhizosphere	MAEDEAARALPTCPPTYTQLGVTLVCTTCGAVVGANDADQIRHTTWHTTLAELFALAQGR
Ga0157374_118782562	3300013296	Miscanthus Rhizosphere	MTEDYAARGLPTCPATYRLRNGIPVCTTCGAVIGAADADQIRHSTWHTTLAALFAVADLHAPVVDDA*
Ga0163162_115466801	3300013306	Switchgrass Rhizosphere	MTEDDAARGLPTCPATYRLRDGIPVCTTCGAVIGAADADQIRHSTWHTTLAALFAV
Ga0157372_123831751	3300013307	Corn Rhizosphere	MTEDDADRGLPTCPATYRLRDGIPVCTTCGAVIGAADADQIRHSTWHTTLAALFAVADLHAPVVDDA*
Ga0157379_107884701	3300014968	Switchgrass Rhizosphere	MTEDDAARGLPTCPATYLLRDGIPVCTTCGAVIGGADADQIRHSTWHTTLAALFAVADPKDPVDQDR*
Ga0132258_101265613	3300015371	Arabidopsis Rhizosphere	MTEDEAARGLPTCPATYLRRDGALVCTTCGAVIGGTDSDQIRHSTWHTALADLFSAADAYRPAV*
Ga0132258_107238064	3300015371	Arabidopsis Rhizosphere	MTEDEAARGLPTCPATYLLRDGGLVCTTCGAIVGGTDSDQIRHSTWHMSLAALFAMADARRPAVYGRRQRCGPP*
Ga0132258_111791231	3300015371	Arabidopsis Rhizosphere	MTEDDAARRLPTLPPTYTLRDGTPVCTTCGAVIGGTGADQIRHSTWHTNLAGLFALVDPNEPSGRPSKVR*
Ga0132258_112302051	3300015371	Arabidopsis Rhizosphere	DHYDPEGGPGMTEDEAARGLPTCPATYLLRDGAPVCTTCGAVVGGADSEQIRHSTWHTALAVLFAVADAHRPAVHGR*
Ga0132258_114542931	3300015371	Arabidopsis Rhizosphere	MTEDEAARGLPTCPATYLLRDGVLVCTTCGAAVGGTDSDQIRHSTWHSALAALFAVADAYRPAV*
Ga0132258_119456402	3300015371	Arabidopsis Rhizosphere	MTEDEAARGLPTCPATYLLRDGAPVCTTCGAAVGGTDADQIRHSTWHTALATLFATANARRPAV*
Ga0132258_129918841	3300015371	Arabidopsis Rhizosphere	MTEDEAARGLPNFPPTYMLRDGTPVCTTCGAVIGGAGADQIRHSTWHANLAGLFGLADLTEQAGQPWEVR*
Ga0132258_139698161	3300015371	Arabidopsis Rhizosphere	MTEDEAARGLPTCPATYLLRDGALVCTTCGAAVGGTDSDQIRHSTWHSALAALFAVA
Ga0132256_1001794453	3300015372	Arabidopsis Rhizosphere	MTEDEAARGLPTCPATYLLRDGTPVCTTCGAAVGSTDADQIRHSAWHTTLADLFAVADAHRPVV
Ga0132256_1008568211	3300015372	Arabidopsis Rhizosphere	MTEDDAARRLPTLPPTYTLRDGTPVCTTCGAVIGGTGADQIRHSTWHANLAGLYALVDPNEPAGQPAKVR*
Ga0132256_1031055011	3300015372	Arabidopsis Rhizosphere	MTEDQAARALPTCPPTYMRRDGALVCTACGAVIGGTDGDQIRHTTWHATLADLFALASGR
Ga0132257_1029611171	3300015373	Arabidopsis Rhizosphere	MTEDEAVRGLPTCPATYLIRDGAPVCTTCGAAVGGADADQIRHSTWHTALA
Ga0132255_1004726191	3300015374	Arabidopsis Rhizosphere	RRLPTLPPTYTLRDGTPVCTTCGAVIGGTGADQIRHSTWHANLAGLYGICQPE*
Ga0132255_1010045711	3300015374	Arabidopsis Rhizosphere	MTEDEAARGLPTCPATYLLRDGVLVCTTCGAAVGGTDSDQIRHSTWHSALAALFAV
Ga0132255_1042357141	3300015374	Arabidopsis Rhizosphere	GMTEDEAARGLPTCPATYLLRDGAPVCTTCGAVVGGTAPDQIRHSTWHTALAALFAVADAHRPAVYSRRQRCGPP*
Ga0132255_1049375991	3300015374	Arabidopsis Rhizosphere	MTEDEAARGLPNFPPTYMLRDGTPVCTTCGAVIGGAGADQIRHSTWHANLAGLFGLADL
Ga0190266_111712851	3300017965	Soil	MTEDEAARGLPTFPPTYTLRGGTPVCTTCGAVIGNTGADQIRHTTWHANLAGLFALVDPNEPAGEPAQVR
Ga0184625_103849471	3300018081	Groundwater Sediment	MTEDDAARGLPTCPATYLLRDGIPVCTTCGAVIGGADADQIRHSTWHTTLTALFAVADPHDPSTKAG
Ga0066667_113289702	3300018433	Grasslands Soil	MTEDDAARGLPTCPATYRLRDGIPVCTTCGAVIGAADADQIRHSTWHTTLAALFAVADLHDPVVDDA
Ga0190274_111083761	3300018476	Soil	PTTERKAPEMTEDHAARALPTCPPTYMRRGGTLVCTTCGAVIGATEADQIRHTTWHATLTELFTLASGR
Ga0190271_105359473	3300018481	Soil	SRRPGANNGTEGPREMAEDQAARALPTCLPTYMQRAGTFVCTTCVAVIGATEADQIRHTTWHTTLSELFALASGR
Ga0190271_133410551	3300018481	Soil	MTEDDAARGLPTCPATYLLRDGVPVCTTCGAVIGGAAGDQIRHSTWHTTL
Ga0190273_100148163	3300018920	Soil	MTEDEATRGLPTFPPTYMLRDGAPVCTTCGAVIARAGANQIRHSTWHANLAGLFALADPNEPIGQPSKAR
Ga0190273_108962462	3300018920	Soil	MTEDDAARGLPTCPATYRLRDGIPVCTTCGAVIGAADADQIRHSTWHTTLAALFAVADRNDPVDQAR
Ga0190273_120009121	3300018920	Soil	MTEDDAARGLPTCPATYLLRDGIPVCTTCGAVIGGADADQIRHSTWHTTLAALCAVANPHDPSTRA
Ga0173479_104513822	3300019362	Soil	MTEDDAARGLPTCPATYLLRDGIPVCTTCGAVIGGADADQIRHSTWHANLAGLFALAGLTEPADQPSRVR
Ga0207656_100902851	3300025321	Corn Rhizosphere	MTEDDAARGLPTCPATYLLRDGIPVCTTCGAVIGGADADQIRHSTWHTTL
Ga0207688_102686881	3300025901	Corn, Switchgrass And Miscanthus Rhizosphere	MTEDDAARGLPTCPATYLLRDGIPVCTTCGAVIGGADADQIRHSTWHTTLTALFAVTDPHGPVDQGRRTFGP
Ga0207688_103953971	3300025901	Corn, Switchgrass And Miscanthus Rhizosphere	MTEDDAARRLPTLPPTYTLRDGTPVCTTCGAVIGGTGADQIRHSTWHANLAGLYALVDPNEPAGQPAKVR
Ga0207654_109892261	3300025911	Corn Rhizosphere	MAEDEAARALPTCPPTYIQRGGTLVCTTCGAVVGANDADQIRHTTWHTTLAELFALAQGR
Ga0207650_113056711	3300025925	Switchgrass Rhizosphere	DAARRLPTFPPTYMLRDGSHVCTTCGAVIGDADADQIRHNTWHATLAALFALVDPNEPAAGRPSTVH
Ga0207659_117661982	3300025926	Miscanthus Rhizosphere	MTEDDAARGLPTCPATYLLRDGIPVCTTCGAVIGGADADQIRHSTWHTTHAALFPV
Ga0207648_104206031	3300026089	Miscanthus Rhizosphere	EGPEMAEDEAARALPTCPPTYIQRGGTLVCTTCGAVVGANDADQIRHTTWHTTLAELFALAQGR
Ga0207675_1022726251	3300026118	Switchgrass Rhizosphere	MTEDDAARGLPTCPATYLLRDGIPVCTTCRAVIGGTDADQIRHSTWHTTLTALFAVADPHDPSTNA
Ga0268266_110436242	3300028379	Switchgrass Rhizosphere	MSEDQAARALPTCPPTYMQRGGTVVCTTCGAVIGGTEADQIRHTIWHTTLAELFVLASGR
Ga0247822_109373112	3300028592	Soil	TEDDAARGLPTFPPTYMLRDGTHICTTCGALIGGADADQIRHSIWHPTLVALFALVDPNEPAAGHPSKVR
Ga0247821_100533532	3300028596	Soil	MTGDDAARGLPTFPPTYMLRDDTHICTTCGALIGGADADQIRHSIWHPTLVALFALVDPNEPAAGHPSKVR
Ga0247821_101546741	3300028596	Soil	MTEDEAARGLPTCPATYLLRDGGLVCTTCGAIVGGTDSDQIRHSTWHMSLAALFAMADARRPAVYGRRQRCGPP
Ga0247820_103453301	3300028597	Soil	MTEDEAARGLPNFPPTYMLRDGTPVCTTCGAVIGGAGADQIRHSTWHANLAGLFGLADLTEPAGQPWEVR
Ga0247820_104191981	3300028597	Soil	MTGDDAARGLPTFPPTYMLRDDTHICTTCGALIGGADADQIRHSIWHPTLVALFALVDPNEPAIQGPLTVHLVRRIPTARATRCQFTD
Ga0247825_101456301	3300028812	Soil	MTEDDAARRLPTLPPTYTLRDGTPVCTTCGAVIGGTGADQIRHSTWHANLAGLYA
Ga0247825_103248652	3300028812	Soil	MTEDEAARGLPNFPPTYMLRDGTPVCTTCGAVIGGAGADQIRHSTWHANLAGLFGLADLTEPAGRPWAVR
Ga0247826_104507842	3300030336	Soil	MTEDDAARRLPTCPATYLLRDGIPVCTTCGAVVGGADADQIRHSTWHTSLTALF
Ga0247826_113995901	3300030336	Soil	RGLPTCPATYLLRDGGLVCTTCGAIVGGTDSDQIRHSTWHMSLAALFAMADARRPAVYGRRQRCGPP
Ga0310886_109085681	3300031562	Soil	MTEDEAARGLPTCPATYLLRDGALVCTTCGAAVGGTDSDQIRHSTWHSALAALFAVADAYRPAV
Ga0310907_103595862	3300031847	Soil	MTEDEAARGLPTCPATYLLRDGAPVCTTCGAVVGGTAPDQIRHSTWHTALAALFAVADARRPAVYGRRQRCGPP
Ga0310907_107983811	3300031847	Soil	MTEDDAARRLPTLPPTYTLRDGTPVCTTCGAVIGCTGADQIRHSTWHANLAGLYALVDPNEPAGQPAKVR
Ga0310893_100201741	3300031892	Soil	MTEDEAARGLPTCPATYLLRDGAPVCTTCGAVVGGADSEQIRHSTWHTALAALFAVADAH
Ga0308175_1000195514	3300031938	Soil	MTEDEAARGLPTFPPTYMLRDGTPVCTTCGAVVGGAGTDQIRHSTWHANLAGLFALAGLTEPADQPSRVR
Ga0308175_1018849831	3300031938	Soil	MTEDEAARGLPTFPPTYTLRGGTPVCTTCGAVVGDGGADQIRHSTWHANLAGLFALAGLTEPAGQPSKVR
Ga0308175_1031094881	3300031938	Soil	MTEDEAARGLPTCPATYMLRDGAPVCTTCGAVVGGTDTDQIRHSTWHTTLAALFAAADAHRTA
Ga0308174_102039321	3300031939	Soil	MTEDEAARGLPTFPPTYMLRDGTPVCTTCGAVVGGAGTDQIRHSTWHANLAGLFALAGLTEPANQPSRVR
Ga0308174_113813211	3300031939	Soil	MTEDDAARGLPTCPATYLLRDGIPVCTTCGAVIGGADADQIRHSTWHTTLTALFAVTDPHDPSTKAW
Ga0310901_103867371	3300031940	Soil	MTEDDAARGLPTLPPTYTLRDGTPVCTTCGAVIGGTGADQIRHSTWHANLAGLYALVDPNEPAGQPAKVR
Ga0308176_102834273	3300031996	Soil	MTEDDAARGLPTFPPTYTLRDGTPVCTTCGAVIGGTGADQIRHSTWHANLAGLFALIDPNEPSGQPPKVR
Ga0310902_100820911	3300032012	Soil	MTEDEAARGLPTCPATYLLRDGGLVCTTCGAIVGGTDSDQIRHSTWHMSLAALFAMADARRPAVYGRRERCGPP
Ga0310890_108934472	3300032075	Soil	MTEDEAARGLPTCPATYLLRDGAPVCTTCGAVVGGADSEQIRHSTWHTALAVLFAVADAHRPAVHGR
Ga0326721_102728292	3300032080	Soil	MTEDEAARALPTCPPTYMRRAGALVCTTCGAVIGATDPDQIRHTTWHRTIAELFVLASGR
Ga0326721_107768562	3300032080	Soil	MTEDQAARALPTCPPTYMRRGGTLVCTTCGAVIGATEADQIRHTTWHATLAELFTLASGR
Ga0247829_107685501	3300033550	Soil	VTAIRTRLAMTEDEAARGLPNFPPTYMLRDGTPVCTTCGAVIGGAGADQIRHS
Ga0247829_115912821	3300033550	Soil	MTEDDAARGLPTCPATYLLRDGIPVCTTCGAVVGGAAGDQIRHSTWHTTTLTALFAATDPHDPPTNAG

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F080017

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences