NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F079933

Metagenome Family F079933

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F079933
Family Type Metagenome
Number of Sequences 115
Average Sequence Length 47 residues
Representative Sequence PLACAGIMMAQAMRIYKSMLTENEFNMMVETILKSRPEITTIEKPTIN
Number of Associated Samples 82
Number of Associated Scaffolds 115

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 99.13 %
% of genes from short scaffolds (< 2000 bps) 94.78 %
Associated GOLD sequencing projects 77
AlphaFold2 3D model prediction No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (68.696 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine
(16.522 % of family members)
Environment Ontology (ENVO) Unclassified
(81.739 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(85.217 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 62.50%    β-sheet: 0.00%    Coil/Unstructured: 37.50%
Feature Viewer
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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 115 Family Scaffolds
PF137592OG-FeII_Oxy_5 33.91
PF136402OG-FeII_Oxy_3 7.83
PF12838Fer4_7 2.61
PF06945DUF1289 1.74
PF16861Carbam_trans_C 1.74
PF04299FMN_bind_2 0.87
PF02629CoA_binding 0.87
PF00303Thymidylat_synt 0.87

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 115 Family Scaffolds
COG3313Predicted Fe-S protein YdhL, DUF1289 familyGeneral function prediction only [R] 1.74
COG0207Thymidylate synthaseNucleotide transport and metabolism [F] 0.87


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A68.70 %
All OrganismsrootAll Organisms31.30 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000101|DelMOSum2010_c10068491All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon1651Open in IMG/M
3300000101|DelMOSum2010_c10092024Not Available1294Open in IMG/M
3300000101|DelMOSum2010_c10096086All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Parvibaculaceae → Parvibaculum → unclassified Parvibaculum → Parvibaculum sp.1249Open in IMG/M
3300000101|DelMOSum2010_c10109852All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon TMED971117Open in IMG/M
3300000101|DelMOSum2010_c10111428All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon TMED971104Open in IMG/M
3300000115|DelMOSum2011_c10070741All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon TMED971259Open in IMG/M
3300000115|DelMOSum2011_c10082810Not Available1107Open in IMG/M
3300000115|DelMOSum2011_c10202479Not Available552Open in IMG/M
3300000116|DelMOSpr2010_c10091751Not Available1170Open in IMG/M
3300000117|DelMOWin2010_c10082744All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon TMED971243Open in IMG/M
3300000117|DelMOWin2010_c10096240All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon TMED971100Open in IMG/M
3300000117|DelMOWin2010_c10233120Not Available547Open in IMG/M
3300001346|JGI20151J14362_10142204Not Available733Open in IMG/M
3300001349|JGI20160J14292_10139796Not Available777Open in IMG/M
3300004097|Ga0055584_101819343Not Available627Open in IMG/M
3300004279|Ga0066605_10142535Not Available957Open in IMG/M
3300006737|Ga0098037_1044227Not Available1615Open in IMG/M
3300006737|Ga0098037_1112221Not Available937Open in IMG/M
3300006920|Ga0070748_1330505Not Available539Open in IMG/M
3300006925|Ga0098050_1104312Not Available724Open in IMG/M
3300006929|Ga0098036_1049622Not Available1306Open in IMG/M
3300006929|Ga0098036_1076067Not Available1035Open in IMG/M
3300007540|Ga0099847_1021360Not Available2105Open in IMG/M
3300007544|Ga0102861_1023155Not Available1550Open in IMG/M
3300007963|Ga0110931_1058500Not Available1163Open in IMG/M
3300009071|Ga0115566_10198629All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon TMED971225Open in IMG/M
3300009071|Ga0115566_10212403Not Available1175Open in IMG/M
3300009077|Ga0115552_1078169All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Parvibaculaceae → Parvibaculum → unclassified Parvibaculum → Parvibaculum sp.1460Open in IMG/M
3300009193|Ga0115551_1140082All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Maricaulales → Maricaulaceae → Maricaulis → unclassified Maricaulis → Maricaulis sp.1113Open in IMG/M
3300009433|Ga0115545_1275115Not Available562Open in IMG/M
3300009436|Ga0115008_10296290Not Available1148Open in IMG/M
3300009442|Ga0115563_1348057Not Available533Open in IMG/M
3300009443|Ga0115557_1288467Not Available620Open in IMG/M
3300009445|Ga0115553_1054560Not Available1816Open in IMG/M
3300009449|Ga0115558_1280754Not Available666Open in IMG/M
3300009476|Ga0115555_1428598Not Available525Open in IMG/M
3300009496|Ga0115570_10260518Not Available762Open in IMG/M
3300009507|Ga0115572_10089221Not Available1867Open in IMG/M
3300009507|Ga0115572_10140069All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon TMED971425Open in IMG/M
3300009508|Ga0115567_10259790All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon TMED971101Open in IMG/M
3300009508|Ga0115567_10375753All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon878Open in IMG/M
3300010149|Ga0098049_1155790Not Available706Open in IMG/M
3300011128|Ga0151669_100957All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium979Open in IMG/M
3300011129|Ga0151672_108196Not Available995Open in IMG/M
3300011258|Ga0151677_1062620Not Available867Open in IMG/M
3300017697|Ga0180120_10154972All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon TMED97969Open in IMG/M
3300017725|Ga0181398_1103475Not Available679Open in IMG/M
3300017748|Ga0181393_1088657Not Available805Open in IMG/M
3300017770|Ga0187217_1166809All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Maricaulales → Maricaulaceae → Maricaulis → unclassified Maricaulis → Maricaulis sp.734Open in IMG/M
3300017772|Ga0181430_1142580All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon TMED97698Open in IMG/M
3300017779|Ga0181395_1098812All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon TMED97936Open in IMG/M
3300017779|Ga0181395_1199672Not Available621Open in IMG/M
3300020165|Ga0206125_10054272All Organisms → Viruses → Predicted Viral1919Open in IMG/M
3300020165|Ga0206125_10098086Not Available1249Open in IMG/M
3300020166|Ga0206128_1326626Not Available537Open in IMG/M
3300020169|Ga0206127_1131469Not Available997Open in IMG/M
3300020169|Ga0206127_1283775Not Available557Open in IMG/M
3300020385|Ga0211677_10351977Not Available580Open in IMG/M
3300020388|Ga0211678_10186454Not Available875Open in IMG/M
3300020431|Ga0211554_10317113Not Available731Open in IMG/M
3300020469|Ga0211577_10174278Not Available1433Open in IMG/M
3300020595|Ga0206126_10141623Not Available1152Open in IMG/M
3300021185|Ga0206682_10034162Not Available2977Open in IMG/M
3300021185|Ga0206682_10109503All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Parvibaculaceae → Parvibaculum → unclassified Parvibaculum → Parvibaculum sp.1356Open in IMG/M
3300021185|Ga0206682_10133872All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon TMED971186Open in IMG/M
3300021365|Ga0206123_10370099Not Available595Open in IMG/M
3300021371|Ga0213863_10133329Not Available1150Open in IMG/M
3300021375|Ga0213869_10124937All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon TMED971226Open in IMG/M
3300021375|Ga0213869_10197025All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Maricaulales → Maricaulaceae → Maricaulis → unclassified Maricaulis → Maricaulis sp.910Open in IMG/M
3300021375|Ga0213869_10278633Not Available720Open in IMG/M
3300021375|Ga0213869_10285013Not Available709Open in IMG/M
3300021378|Ga0213861_10320130Not Available789Open in IMG/M
3300021957|Ga0222717_10108552Not Available1728Open in IMG/M
3300021957|Ga0222717_10207712All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon TMED971158Open in IMG/M
3300021959|Ga0222716_10182683Not Available1342Open in IMG/M
3300021960|Ga0222715_10286969Not Available940Open in IMG/M
3300021960|Ga0222715_10521099Not Available627Open in IMG/M
3300022164|Ga0212022_1039857All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon TMED97727Open in IMG/M
(restricted) 3300023109|Ga0233432_10149319All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon TMED971230Open in IMG/M
(restricted) 3300023109|Ga0233432_10156272Not Available1190Open in IMG/M
(restricted) 3300023109|Ga0233432_10453228Not Available547Open in IMG/M
3300024236|Ga0228655_1037760Not Available1143Open in IMG/M
(restricted) 3300024243|Ga0233436_1079822Not Available1120Open in IMG/M
(restricted) 3300024255|Ga0233438_10096693All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon TMED971357Open in IMG/M
(restricted) 3300024255|Ga0233438_10117194Not Available1187Open in IMG/M
(restricted) 3300024261|Ga0233439_10101406Not Available1473Open in IMG/M
(restricted) 3300024261|Ga0233439_10140010Not Available1174Open in IMG/M
(restricted) 3300024264|Ga0233444_10095508All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon TMED971572Open in IMG/M
3300024415|Ga0228662_1140338Not Available535Open in IMG/M
3300025083|Ga0208791_1070379Not Available579Open in IMG/M
3300025084|Ga0208298_1107153Not Available503Open in IMG/M
3300025099|Ga0208669_1056124Not Available888Open in IMG/M
3300025099|Ga0208669_1077418Not Available718Open in IMG/M
3300025110|Ga0208158_1132930Not Available572Open in IMG/M
3300025652|Ga0208134_1057383All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon TMED971207Open in IMG/M
3300025662|Ga0209664_1145983Not Available653Open in IMG/M
3300025690|Ga0209505_1015601Not Available3067Open in IMG/M
3300025830|Ga0209832_1034340All Organisms → Viruses → Predicted Viral1945Open in IMG/M
3300025832|Ga0209307_1098946Not Available938Open in IMG/M
3300025881|Ga0209309_10167168All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon TMED971096Open in IMG/M
3300025897|Ga0209425_10187763All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon TMED971115Open in IMG/M
3300025897|Ga0209425_10208099All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae1039Open in IMG/M
3300027753|Ga0208305_10179895Not Available767Open in IMG/M
3300028136|Ga0228608_1079285All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Maricaulales → Maricaulaceae → Maricaulis → unclassified Maricaulis → Maricaulis sp.932Open in IMG/M
3300028196|Ga0257114_1116294All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon1068Open in IMG/M
3300028196|Ga0257114_1230189Not Available669Open in IMG/M
3300028287|Ga0257126_1203720Not Available616Open in IMG/M
3300031757|Ga0315328_10176314Not Available1248Open in IMG/M
3300031774|Ga0315331_10350858All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Maricaulales → Maricaulaceae → Maricaulis → unclassified Maricaulis → Maricaulis sp.1083Open in IMG/M
3300031774|Ga0315331_10774857Not Available671Open in IMG/M
3300031851|Ga0315320_10066124Not Available2800Open in IMG/M
3300032011|Ga0315316_10044827Not Available3506Open in IMG/M
3300032011|Ga0315316_10068332Not Available2862Open in IMG/M
3300032360|Ga0315334_10156096Not Available1816Open in IMG/M
3300032360|Ga0315334_10569080Not Available975Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Pelagic MarineEnvironmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine16.52%
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine11.30%
MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine10.43%
SeawaterEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater9.57%
SeawaterEnvironmental → Aquatic → Marine → Inlet → Unclassified → Seawater7.83%
SeawaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Seawater7.83%
SeawaterEnvironmental → Aquatic → Marine → Pelagic → Unclassified → Seawater6.09%
SeawaterEnvironmental → Aquatic → Marine → Strait → Unclassified → Seawater5.22%
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine4.35%
Estuarine WaterEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water4.35%
Pelagic MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine4.35%
AqueousEnvironmental → Aquatic → Marine → Coastal → Unclassified → Aqueous3.48%
MarineEnvironmental → Aquatic → Marine → Inlet → Unclassified → Marine2.61%
MarineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Marine2.61%
EstuarineEnvironmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine1.74%
Freshwater To Marine Saline GradientEnvironmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient0.87%
MarineEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine0.87%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000101Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010EnvironmentalOpen in IMG/M
3300000115Marine microbial communities from Delaware Coast, sample from Delaware MO Summer July 2011EnvironmentalOpen in IMG/M
3300000116Marine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010EnvironmentalOpen in IMG/M
3300000117Marine microbial communities from Delaware Coast, sample from Delaware MO Winter December 2010EnvironmentalOpen in IMG/M
3300001346Pelagic Microbial community sample from North Sea - COGITO 998_met_01EnvironmentalOpen in IMG/M
3300001349Pelagic Microbial community sample from North Sea - COGITO 998_met_10EnvironmentalOpen in IMG/M
3300004097Pelagic marine sediment microbial communities from the LTER site Helgoland, North Sea, for post-phytoplankton bloom and carbon turnover studies - OSD3 (Helgoland) metaGEnvironmentalOpen in IMG/M
3300004279Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI075_LV_DNA_10mEnvironmentalOpen in IMG/M
3300006737Marine viral communities from the Subarctic Pacific Ocean - 5_ETSP_OMZ_AT15132 metaGEnvironmentalOpen in IMG/M
3300006920Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12EnvironmentalOpen in IMG/M
3300006925Marine viral communities from the Subarctic Pacific Ocean - 14_ETSP_OMZ_AT15311 metaGEnvironmentalOpen in IMG/M
3300006929Marine viral communities from the Subarctic Pacific Ocean - 4_ETSP_OMZ_AT15127 metaGEnvironmentalOpen in IMG/M
3300007540Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaGEnvironmentalOpen in IMG/M
3300007544Estuarine microbial communities from the Columbia River estuary - metaG 1449B-3EnvironmentalOpen in IMG/M
3300007963Marine viral communities from the Subarctic Pacific Ocean - 4_ETSP_OMZ_AT15127 metaG (version 2)EnvironmentalOpen in IMG/M
3300009071Pelagic marine microbial communities from North Sea - COGITO_mtgs_120405EnvironmentalOpen in IMG/M
3300009077Pelagic marine microbial communities from North Sea - COGITO_mtgs_110328EnvironmentalOpen in IMG/M
3300009193Pelagic marine microbial communities from North Sea - COGITO_mtgs_110321EnvironmentalOpen in IMG/M
3300009433Pelagic marine microbial communities from North Sea - COGITO_mtgs_100330EnvironmentalOpen in IMG/M
3300009436Marine eukaryotic phytoplankton communities from Arctic Ocean - Fram Strait ARC3M MetagenomeEnvironmentalOpen in IMG/M
3300009442Pelagic marine microbial communities from North Sea - COGITO_mtgs_110519EnvironmentalOpen in IMG/M
3300009443Pelagic marine microbial communities from North Sea - COGITO_mtgs_110421EnvironmentalOpen in IMG/M
3300009445Pelagic marine microbial communities from North Sea - COGITO_mtgs_110331EnvironmentalOpen in IMG/M
3300009449Pelagic marine microbial communities from North Sea - COGITO_mtgs_110426EnvironmentalOpen in IMG/M
3300009476Pelagic marine microbial communities from North Sea - COGITO_mtgs_110407EnvironmentalOpen in IMG/M
3300009496Pelagic marine microbial communities from North Sea - COGITO_mtgs_120524EnvironmentalOpen in IMG/M
3300009507Pelagic marine microbial communities from North Sea - COGITO_mtgs_120607EnvironmentalOpen in IMG/M
3300009508Pelagic marine microbial communities from North Sea - COGITO_mtgs_120412EnvironmentalOpen in IMG/M
3300010149Marine viral communities from the Subarctic Pacific Ocean - 13B_ETSP_OMZ_AT15268_CsCl metaGEnvironmentalOpen in IMG/M
3300011128Seawater microbial communities from Japan Sea near Toyama Prefecture, Japan - 2014_2, 0.02EnvironmentalOpen in IMG/M
3300011129Seawater microbial communities from Japan Sea near Toyama Prefecture, Japan - 2014_4, 0.02EnvironmentalOpen in IMG/M
3300011258Seawater microbial communities from Japan Sea near Toyama Prefecture, Japan - 2015_1, permeateEnvironmentalOpen in IMG/M
3300017697Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_31_0.2_DNA (version 2)EnvironmentalOpen in IMG/M
3300017725Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 21 SPOT_SRF_2011-04-29EnvironmentalOpen in IMG/M
3300017748Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 16 SPOT_SRF_2010-10-21EnvironmentalOpen in IMG/M
3300017770Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 15 SPOT_SRF_2010-09-15 (version 2)EnvironmentalOpen in IMG/M
3300017772Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 53 SPOT_SRF_2014-04-10EnvironmentalOpen in IMG/M
3300017779Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 18 SPOT_SRF_2010-12-16EnvironmentalOpen in IMG/M
3300020165Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160331_1EnvironmentalOpen in IMG/M
3300020166Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160426_1EnvironmentalOpen in IMG/M
3300020169Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160419_1EnvironmentalOpen in IMG/M
3300020385Marine microbial communities from Tara Oceans - TARA_B100001059 (ERX556045-ERR598965)EnvironmentalOpen in IMG/M
3300020388Marine microbial communities from Tara Oceans - TARA_B100001063 (ERX555965-ERR599064)EnvironmentalOpen in IMG/M
3300020431Marine microbial communities from Tara Oceans - TARA_B100001142 (ERX556101-ERR598983)EnvironmentalOpen in IMG/M
3300020469Marine microbial communities from Tara Oceans - TARA_B100001093 (ERX555967-ERR599052)EnvironmentalOpen in IMG/M
3300020595Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160412_1EnvironmentalOpen in IMG/M
3300021185Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 40m 12015EnvironmentalOpen in IMG/M
3300021365Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160316_1EnvironmentalOpen in IMG/M
3300021371Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO497EnvironmentalOpen in IMG/M
3300021375Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO132EnvironmentalOpen in IMG/M
3300021378Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO131EnvironmentalOpen in IMG/M
3300021957Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18DEnvironmentalOpen in IMG/M
3300021959Estuarine water microbial communities from San Francisco Bay, California, United States - C33_13DEnvironmentalOpen in IMG/M
3300021960Estuarine water microbial communities from San Francisco Bay, California, United States - C33_9DEnvironmentalOpen in IMG/M
3300022164Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_31 (v2)EnvironmentalOpen in IMG/M
3300023109 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_122_August2016_10_MGEnvironmentalOpen in IMG/M
3300024236Seawater microbial communities from Monterey Bay, California, United States - 67DEnvironmentalOpen in IMG/M
3300024243 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_122_August2016_150_MGEnvironmentalOpen in IMG/M
3300024255 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_123_September2016_10_MGEnvironmentalOpen in IMG/M
3300024261 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_123_September2016_100_MGEnvironmentalOpen in IMG/M
3300024264 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_124_October2016_10_MGEnvironmentalOpen in IMG/M
3300024415Seawater microbial communities from Monterey Bay, California, United States - 76DEnvironmentalOpen in IMG/M
3300025083Marine viral communities from the Subarctic Pacific Ocean - 11_ETSP_OMZ_AT15265 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025084Marine viral communities from the Subarctic Pacific Ocean - 14B_ETSP_OMZ_AT15311_CsCl metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025099Marine viral communities from the Subarctic Pacific Ocean - 21_ETSP_OMZ_AT15319 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025110Marine viral communities from the Subarctic Pacific Ocean - 8_ETSP_OMZ_AT15162 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025652Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_31 (SPAdes)EnvironmentalOpen in IMG/M
3300025662Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI073_LV_150m_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025690Pelagic marine microbial communities from North Sea - COGITO_mtgs_110331 (SPAdes)EnvironmentalOpen in IMG/M
3300025830Pelagic marine microbial communities from North Sea - COGITO_mtgs_110407 (SPAdes)EnvironmentalOpen in IMG/M
3300025832Pelagic marine microbial communities from North Sea - COGITO_mtgs_110530 (SPAdes)EnvironmentalOpen in IMG/M
3300025881Pelagic marine microbial communities from North Sea - COGITO_mtgs_120412 (SPAdes)EnvironmentalOpen in IMG/M
3300025897Pelagic Microbial community sample from North Sea - COGITO 998_met_05 (SPAdes)EnvironmentalOpen in IMG/M
3300027753Estuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.741 (SPAdes)EnvironmentalOpen in IMG/M
3300028136Seawater microbial communities from Monterey Bay, California, United States - 9DEnvironmentalOpen in IMG/M
3300028196Marine microbial communities from Saanich Inlet, British Columbia, Canada - SI112_10mEnvironmentalOpen in IMG/M
3300028287Marine microbial communities from Saanich Inlet, British Columbia, Canada - SI060_120mEnvironmentalOpen in IMG/M
3300031757Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 200m 32315EnvironmentalOpen in IMG/M
3300031774Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 60m 34915EnvironmentalOpen in IMG/M
3300031851Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 40m 21515EnvironmentalOpen in IMG/M
3300032011Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 60m 3416EnvironmentalOpen in IMG/M
3300032360Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 500m 34915EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
DelMOSum2010_1006849143300000101MarineAQAMRIYKSMLTENEFNMMVETILKSRPEITTIEKPTIN*
DelMOSum2010_1009202443300000101MarineQAMRIYKSMLTENEFNMMVETILKSRPEITTIEKPTIN*
DelMOSum2010_1009608643300000101MarineRIYKSMLTENEFNMMVETILKSRPEITTIEKPTIN*
DelMOSum2010_1010985213300000101MarineIMMAQAMRIYKSMLTENEFNMMVETILKSRPEITTIEKPTLN*
DelMOSum2010_1011142833300000101MarinePLACAGIMMAQAMRIYKSMLTENEFNMMVETILKSRPEITTIEKPTLN*
DelMOSum2011_1007074113300000115MarineGIMMAQAMRIYKSMLTENEFNMMVETILKSRPEITTIEKPTLN*
DelMOSum2011_1008281033300000115MarineCAGIMMAQAMRIYKSMLTENEFNMMVETILKSRPEITTIEKPTIN*
DelMOSum2011_1020247923300000115MarineDPLACAGIMMAQAMRIYKSMLTENEFNMMVETILKSRPEITTIEKPTIN*
DelMOSpr2010_1009175113300000116MarineGIMMAQAMRIYKSMLTENEFNMMVETILKSRPEITTIEKPTIN*
DelMOWin2010_1008274443300000117MarineAQAMRIYKSMLTENEFNMMVETILKSRPEITTIEKPTLN*
DelMOWin2010_1009624033300000117MarineACAGIMMAQAMRIYKSMLTENEFNMMVETILKSRPEITTIEKPTLN*
DelMOWin2010_1023312033300000117MarineAGIMMAQAMRIYKSMLTENEFNMMVETILKSRPEITTIEKPTIN*
JGI20151J14362_1014220433300001346Pelagic MarineQDPLACAGIMMAQAMRIYKSMLTENEFNIMVETILKSRPEITTIEKPTIN*
JGI20160J14292_1013979613300001349Pelagic MarineAGIMMAQAMRIYKSMLTENEFNIMVETILKSRPEITTIEKPTIN*
Ga0055584_10181934323300004097Pelagic MarineDPLACAGIMMAQAMRIYKSMLTENEFNIMVETILKSRPEITTVEKPTLN*
Ga0066605_1014253513300004279MarineCAEGENDPLACAGIMMAQAMRIYKSMLTENEFNMMVETILKSRPEITTIEKPTIN*
Ga0098037_104422713300006737MarineLACAGIMMAQAMRIYKSMLTENEFNIMVETILKSRPEIISIEKPTIN*
Ga0098037_111222113300006737MarineEGENDPLACAGIMMAQAMRIYKSMLTENEFNIMVETILKSRPEITTIEKPTIN*
Ga0070748_133050513300006920AqueousAEGENDPLACAGIMMAQAMRIYKSMLTENEFNMMVETILKSRPEITTIEKPTLN*
Ga0098050_110431233300006925MarineCAGIMMAQAMRIYKSMLTENEFNMMVETILKSRPEITAIEKPTLN*
Ga0098036_104962243300006929MarineIMMAQAMRIYKSMLTENEFNMMVETILKSRPEITTIEKPTIN*
Ga0098036_107606743300006929MarineACAGIMMAQAMRIYKSMLTENEFNMMVETILKSRPEITAIEKPTLN*
Ga0099847_102136013300007540AqueousMRIYKSMLTENEFNMMVETILKSRPEITTIEKPTIN*
Ga0102861_102315563300007544EstuarineACAGIMMAQAMRIYKSMLTENEFNMMVETILKSRPEITTIEKPTIN*
Ga0110931_105850013300007963MarineDLCAEGKNDPLACAGIMMAQAMRIYKSMLTENEFNMMVETILKSRPEITTIEKPTIN*
Ga0115566_1019862913300009071Pelagic MarineNDPLACAGIMMAQAMRIYKSMLTENEFNMMVETILKSRPEITTIEKPTLN*
Ga0115566_1021240313300009071Pelagic MarineLCAEGENDPLACAGIMMAQAMRIYKSMLTENEFNMMVETILKSRPEITTIEKPTIN*
Ga0115552_107816943300009077Pelagic MarineDLCAEGENDPLACAGIMMAQAMRIYKSMLTENEFNMMVETILKSRPEITTIEKPTIN*
Ga0115551_114008213300009193Pelagic MarineMRIYKSMLTENEFNMMVETILKTRPEITTIEKPTIN*
Ga0115545_127511533300009433Pelagic MarineIYKSMLTENEFNIMVETILKSRPEIISIEKPTIN*
Ga0115008_1029629013300009436MarineAEGENDPLACAGIMMAQAMRIYKSMLTENEFNMMVETILKSRPEITTIEKPTIN*
Ga0115563_134805713300009442Pelagic MarineENDPLACAGIMMAQAMRIYKSMLTENEFNMMVETILKSRPEITTIEKPTLN*
Ga0115557_128846713300009443Pelagic MarineDPLACAGIMMAQAMRIYKSMLTENEFNIMVETILKSRPEITTIEKPTIN*
Ga0115553_105456013300009445Pelagic MarineDLCEDGQQDPLACAGIMMAQAMRIYKSMLTENEFNIMVETILKSRPEITTIEKPTIN*
Ga0115558_128075423300009449Pelagic MarineACAGIMMAQAMRIYKSMLTENEFNIMVETILKSRPEITTIEKPTIN*
Ga0115555_142859823300009476Pelagic MarineMRIYKSMLTENEFNMMVETILKSRPEITTIEKPTLN*
Ga0115570_1026051813300009496Pelagic MarineLACAGIMMAQAMRIYKSMLTENEFNMMVETILKSRPEITTIEKPTLN*
Ga0115572_1008922113300009507Pelagic MarineKNDPLACAGIMMAQAMRIYKSMLTENEFNMMVETILKSRPEITTIEKPTIN*
Ga0115572_1014006943300009507Pelagic MarineLCAEGENDPLACAGIMMAQAMRIYKSMLTENEFNMMVETILKSRPEITTIEKPTLN*
Ga0115567_1025979033300009508Pelagic MarineCAGIMMAQAMRIYKSMLTENEFNMMVETILKSRPEITTIEKPTLN*
Ga0115567_1037575313300009508Pelagic MarineMRIYKSMLTENEFNIMVETILKSRPEITAIEKPTLN*
Ga0098049_115579033300010149MarineGIMMAQAMRIYKSMLTENEFNIMVETILKSRPEITTIEKPTIN*
Ga0151669_10095743300011128MarineRIYKSMLTENEFNIMVETILKSRPEITTIEKPTIN*
Ga0151672_10819643300011129MarineMAKNDPLACAGIMMAQAMRIYKSMLTENEFNIMVETILKSRPEITTIEKPTIN*
Ga0151677_106262033300011258MarineRIYMSMLTENEFNIMVETILKSRPEITAIEKPTLN*
Ga0180120_1015497233300017697Freshwater To Marine Saline GradientCAEGENDPLACAGIMMAQAMRIYKSMLTENEFNMMVETILKSRPEITTIEKPTLN
Ga0181398_110347513300017725SeawaterVDLCAEGENDPLACAGIMMAQAMRIYKSMLTENEFNMMVETILKTRPEITTIEKPTIN
Ga0181393_108865713300017748SeawaterDPLACAGIMMAQAMRIYKSMLTENEFNMMVETILKSRPEITTIEKPTIN
Ga0187217_116680913300017770SeawaterGIMMAQAMRIYKSMLTENEFNMMVETILKTRPEITTIEKPTIN
Ga0181430_114258023300017772SeawaterRIYKSMLTENEFNMMVETILKSRPEITTIEKPTLN
Ga0181395_109881213300017779SeawaterNDPLACAGIMMAQAMRIYKSMLTENEFNMMVETILKSRPEITTIEKPTLN
Ga0181395_119967213300017779SeawaterLCEDGQNDPLACAGIMMAQAMRIYKSMLTENEFNMMVETILKSRPEITTIEKPTIN
Ga0206125_1005427213300020165SeawaterCAEGENDPLACAGIMMAQAMRIYKSMLTENEFNMMVETILKSRPEITTIEKPTIN
Ga0206125_1009808643300020165SeawaterPLACAGIMMAQAMRIYKSMLTENEFNMMVETILKSRPEITTIEKPTIN
Ga0206128_132662623300020166SeawaterRIYKSMLTENEFNMMVETILKSRPEITTIEKPTIN
Ga0206127_113146933300020169SeawaterGQQDPLACAGIMMAQAMRIYKSMLTENEFNIMVETILKSRPEITTIEKPTIN
Ga0206127_128377533300020169SeawaterIMMAQAMRIYKSMLTENEFNMMVETILKSRPEITTIEKPTIN
Ga0211677_1035197713300020385MarineMAQAMRIYKSMLTENEFNIMVETILKSRPEITTIEKPTIN
Ga0211678_1018645433300020388MarineIMMAQAMRIYKSMLTENEFNIMVETILKSRPEITTIEKPTIN
Ga0211554_1031711313300020431MarineMAQAMRIYKSMLTENEFNMMVETILKSRPEITTIEKPTIN
Ga0211577_1017427813300020469MarineQAMRIYKSMLTENEFNMMVETILKSRPEITTIEKPTIN
Ga0206126_1014162333300020595SeawaterDLCAEGKNDPLACAGIMMAQAMRIYKSMLTENEFNMMVETILKSRPEITTIEKPTIN
Ga0206682_1003416213300021185SeawaterDLCAEGENDPLACAGIMMAQAMRIYKSMLTENEFNMMVETILKTRPEITTIEKPTIN
Ga0206682_1010950343300021185SeawaterAGIMMAQAMRIYKSMLTENEFNMMVETILKSRPEITTIEKPTIN
Ga0206682_1013387233300021185SeawaterQAMRIYKSMLTENEFNMMVETILKSRPEITTIEKPTLN
Ga0206123_1037009923300021365SeawaterLCAEGKNDPLACAGIMMAQAMRIYKSMLTENEFNMMVETILKSRPEITTIEKPTIN
Ga0213863_1013332913300021371SeawaterDGQQDPLACAGIMMAQAMRIYKSMLTENEFNIMVETILKSRPEITTIEKPTIN
Ga0213869_1012493743300021375SeawaterENDPLACAGIMMAQAMRIYKSMLTENEFNMMVETILKSRPEITTIEKPTLN
Ga0213869_1019702513300021375SeawaterPLACAGIMMAQAMRIYKSMLTENEFNMMVETILKTRPEITTIEKPTIN
Ga0213869_1027863323300021375SeawaterCAGIMMAQAMRIYKSMLTENEFNMMVETILKSRPEITTIEKPTIN
Ga0213869_1028501333300021375SeawaterENDPLACAGIMMAQAMRIYKSMLTENEFNMMVETILKSRPEITTIEKPTIN
Ga0213861_1032013033300021378SeawaterWVDLCAEGENDPLACAGIMMAQAMRIYKSMLTENEFNMMVETILKSRPEITTIEKPTIN
Ga0222717_1010855243300021957Estuarine WaterLCAEGENDPLACAGIMMAQAMRIYKSMLTENEFNMMVETILKSRPEITTIEKPTIN
Ga0222717_1020771233300021957Estuarine WaterDLCAEGKNDPLACAGIMMAQAMRIYKSMLTENEFNMMVETILKSRPEITTIEKPTLN
Ga0222716_1018268343300021959Estuarine WaterAQAMRIYKSMLTENEFNMMVETILKSRPEITTIEKPTIN
Ga0222715_1028696933300021960Estuarine WaterAMRIYKSMLTENEFNMMVETILKSRPEITTIEKPTIN
Ga0222715_1052109933300021960Estuarine WaterEGENDPLACAGIMMAQAMRIYKSMLTENEFNMMVETILKTRPEITTIEKPTIN
Ga0212022_103985713300022164AqueousACAGIMMAQAMRIYKSMLTENEFNMMVETILKSRPEITTIEKPTLN
(restricted) Ga0233432_1014931913300023109SeawaterLACAGIMMAQAMRIYKSMLTENEFNMMVETILKSRPEITTIEKPTLN
(restricted) Ga0233432_1015627233300023109SeawaterVDLCAEGENDPLACAGIMMAQAMRIYKSMLTENEFNMMVETILKSRPEITTIEKPTIN
(restricted) Ga0233432_1045322823300023109SeawaterLACAGIMMAQAMRIYKSMLTENEFNMMVETILKTRPEITTIEKPTIN
Ga0228655_103776013300024236SeawaterMRIYKSMLTENEFNMMVETILKSRPEITTIEKPTIN
(restricted) Ga0233436_107982233300024243SeawaterGIMMAQAMRIYKSMLTENEFNMMVETILKSRPEITTIEKPTIN
(restricted) Ga0233438_1009669313300024255SeawaterLCAEGKNDPLACAGIMMAQAMRIYKSMLTENEFNMMVETILKSRPEITTIEKPTLN
(restricted) Ga0233438_1011719413300024255SeawaterDLCAEGENDPLACAGIMMAQAMRIYKSMLTENEFNMMVETILKSRPEITTIEKPTIN
(restricted) Ga0233439_1010140613300024261SeawaterDPLACAGIMMAQAMRIYKSMLTENEFNMMVETILKSQPEITTIEKPTIN
(restricted) Ga0233439_1014001013300024261SeawaterEGENDPLACAGIMMAQAMRIYKSMLTENEFNMMVETILKSRPEITTIEKPTIN
(restricted) Ga0233444_1009550853300024264SeawaterDLCAEGENDPLACAGIMMAQAMRIYKSMLTENEFNMMVETILKSRPEITTIEKPTLN
Ga0228662_114033813300024415SeawaterACAGIMMAQAMRIYKSMLTENEFNMMVETILKSRPEITTIEKPTIN
Ga0208791_107037933300025083MarineIMMAQAMRIYKSMLTENEFNMMVETILKSRPEITTIEKPTLN
Ga0208298_110715323300025084MarineMAQAMRIYKSMLTENEFNIMVETILKSRPEITSIEKPTIN
Ga0208669_105612433300025099MarineMRIYKSMLTENEFNIMVETILKSRPEITTIEKPTLN
Ga0208669_107741823300025099MarineAQAMRIYKSMLTENEFNIMVETILKSRPEITTIEKPTIN
Ga0208158_113293023300025110MarineKNDPLACAGIMMAQAMRIYKSMLTENEFNIMVETILKSRPEITTIEKPTIN
Ga0208134_105738313300025652AqueousMMAQAMRIYKSMLTENEFNMMVETILKSRPEITTIEKPTLN
Ga0209664_114598313300025662MarineGENDPLACAGIMMAQAMRIYKSMLTENEFNMMVETILKSRPEITTIEKPTIN
Ga0209505_101560173300025690Pelagic MarineCEDGQQDPLACAGIMMAQAMRIYKSMLTENEFNIMVETILKSRPEITTIEKPTIN
Ga0209832_103434053300025830Pelagic MarineNDPLACAGIMMAQAMRIYKSMLTENEFNMMVETILKSRPEITTIEKPTIN
Ga0209307_109894633300025832Pelagic MarineQQDPLACAGIMMAQAMRIYKSMLTENEFNIMVETILKSRPEITTIEKPTIN
Ga0209309_1016716833300025881Pelagic MarineCAGIMMAQAMRIYKSMLTENEFNMMVETILKSRPEITTIEKPTLN
Ga0209425_1018776333300025897Pelagic MarineGENDPLACAGIMMAQAMRIYKSMLTENEFNMMVETILKSRPEITTIEKPTLN
Ga0209425_1020809933300025897Pelagic MarineGEQDPLACAGIMMAQAMRIYKSMLTENEFNIMVETILKSRPEIISIEKPTIN
Ga0208305_1017989533300027753EstuarineMMAQAMRIYKSMLTENEFNMMVETILKSRPEITTIEKPTIN
Ga0228608_107928533300028136SeawaterAMRIYKSMLTENEFNMMVETILKTRPEITTIEKPTIN
Ga0257114_111629433300028196MarineLACAGIMMAQAMRIYKSMLTENEFNMMVETILKSRPEITTIEKPTIN
Ga0257114_123018923300028196MarineQDPLACAGIMMAQAMRIYKSMLTENEFNIMVETILKSRPEITTVEKPTIN
Ga0257126_120372013300028287MarineVMMAQAMRIYKSMLTENEFNIMVETILKSRPEITTIEKPTIN
Ga0315328_1017631413300031757SeawaterCADGVNDPLACAGIMMAQAMRIYKTALNENEFNIMTETILKSRKDIIEFESPTIN
Ga0315331_1035085833300031774SeawaterGENDPLACAGIMMAQAMRIYKSMLTENEFNMMVETILKTRPEITTIEKPTIN
Ga0315331_1077485713300031774SeawaterGQNDPLACAGIMMAQAMRIYKSMLTENEFNMMVETILKSRPEITTIEKPTIN
Ga0315320_1006612443300031851SeawaterNDPLACAGIMMAQAMRIYKSMLTENEFNMMVETILKTRPEITTIEKPTIN
Ga0315316_1004482773300032011SeawaterDLCADGVNDPLACAGIMMAQAMRIYKTALNENEFNIMTETILKSRKDIIEFESPTIN
Ga0315316_1006833243300032011SeawaterAEGENDPLACAGIMMAQAMRIYKSMLTENEFNMMVETILKTRPEITTIEKPTIN
Ga0315334_1015609613300032360SeawaterTADLCADGVNDPLACAGIMMAQAMRIYKTALNENEFNIMTETILKSRSNIIEFESPTIN
Ga0315334_1056908013300032360SeawaterTADLCADGVNDPLACAGIMMAQAMRIYKTALNENEFNIMTETILKSRNNIIEFESPTIN


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