Metagenome / Metatranscriptome Family F079901

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F079901
Family Type	Metagenome / Metatranscriptome
Number of Sequences	115
Average Sequence Length	86 residues
Representative Sequence	LFNAPNAAAITNRNTTLVLSNPNDPVTNVAPVFDPVTGLLNNGVNLTSTGAVSPDRSKPKNAGFGVATAYQTPRNVQLQVRFSF
Number of Associated Samples	97
Number of Associated Scaffolds	115

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	1.75 %
% of genes near scaffold ends (potentially truncated)	96.52 %
% of genes from short scaffolds (< 2000 bps)	95.65 %
Associated GOLD sequencing projects	85
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.20

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (89.565 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (15.652 % of family members)
Environment Ontology (ENVO)	Unclassified (34.783 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (53.913 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 1.79% Coil/Unstructured: 98.21%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.20
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.20
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 115 Family Scaffolds
PF01431	Peptidase_M13	1.74
PF05649	Peptidase_M13_N	0.87
PF08837	DUF1810	0.87
PF12796	Ank_2	0.87
PF00294	PfkB	0.87
PF00120	Gln-synt_C	0.87
PF00291	PALP	0.87
PF06580	His_kinase	0.87
PF05960	DUF885	0.87
PF13442	Cytochrome_CBB3	0.87
PF01261	AP_endonuc_2	0.87
PF00034	Cytochrom_C	0.87
PF01467	CTP_transf_like	0.87
PF07676	PD40	0.87
PF13646	HEAT_2	0.87
PF02518	HATPase_c	0.87

COG ID	Name	Functional Category	% Frequency in 115 Family Scaffolds
COG3590	Predicted metalloendopeptidase	Posttranslational modification, protein turnover, chaperones [O]	2.61
COG2972	Sensor histidine kinase YesM	Signal transduction mechanisms [T]	0.87
COG3275	Sensor histidine kinase, LytS/YehU family	Signal transduction mechanisms [T]	0.87
COG4805	Uncharacterized conserved protein, DUF885 family	Function unknown [S]	0.87
COG5579	Uncharacterized conserved protein, DUF1810 family	Function unknown [S]	0.87

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	89.57 %
Unclassified	root	N/A	10.43 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	89.57 %
Unclassified	root	N/A	10.43 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	89.57 %
Unclassified	root	N/A	10.43 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	61.74 %
Unclassified	root	N/A	10.43 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	3.48 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	1.74 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	26.96 %
Unclassified	root	N/A	10.43 %
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	1.74 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1.74 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.87 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.87 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	26.96 %
Unclassified	root	N/A	10.43 %
Balneolaeota	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Balneolaeota	1.74 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.87 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.87 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.87 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	26.96 %
Unclassified	root	N/A	10.43 %
Balneolia	class	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Balneolaeota → Balneolia	1.74 %
Oxalobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae	0.87 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.87 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.87 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	26.96 %
Unclassified	root	N/A	10.43 %
Balneolales	order	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Balneolaeota → Balneolia → Balneolales	1.74 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.87 %
Janthinobacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Janthinobacterium	0.87 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.87 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	26.96 %
Unclassified	root	N/A	10.43 %
Balneolaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Balneolaeota → Balneolia → Balneolales → Balneolaceae	1.74 %
Janthinobacterium lividum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Janthinobacterium → Janthinobacterium lividum	0.87 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.87 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.87 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	26.96 %
Unclassified	root	N/A	10.43 %
Aliifodinibius	genus	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Balneolaeota → Balneolia → Balneolales → Balneolaceae → Aliifodinibius	1.74 %
Janthinobacterium lividum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Janthinobacterium → Janthinobacterium lividum	0.87 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.87 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.87 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000559\|F14TC_101384984	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	517	Open in IMG/M
3300000891\|JGI10214J12806_10133673	All Organisms → cellular organisms → Bacteria	519	Open in IMG/M
3300003319\|soilL2_10291205	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	1259	Open in IMG/M
3300004114\|Ga0062593_101723627	All Organisms → cellular organisms → Bacteria	685	Open in IMG/M
3300004114\|Ga0062593_102874314	All Organisms → cellular organisms → Bacteria → Acidobacteria	550	Open in IMG/M
3300004156\|Ga0062589_102335392	Not Available	550	Open in IMG/M
3300004157\|Ga0062590_100477980	All Organisms → cellular organisms → Bacteria	1053	Open in IMG/M
3300004480\|Ga0062592_102298654	All Organisms → cellular organisms → Bacteria	539	Open in IMG/M
3300004643\|Ga0062591_101829727	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	620	Open in IMG/M
3300005293\|Ga0065715_10405004	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	877	Open in IMG/M
3300005328\|Ga0070676_10663516	All Organisms → cellular organisms → Bacteria	758	Open in IMG/M
3300005344\|Ga0070661_101209498	All Organisms → cellular organisms → Bacteria → Acidobacteria	632	Open in IMG/M
3300005347\|Ga0070668_101995714	All Organisms → cellular organisms → Bacteria → Proteobacteria	535	Open in IMG/M
3300005353\|Ga0070669_101163008	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	666	Open in IMG/M
3300005354\|Ga0070675_100972545	All Organisms → cellular organisms → Bacteria → Acidobacteria	779	Open in IMG/M
3300005364\|Ga0070673_100550308	All Organisms → cellular organisms → Bacteria	1048	Open in IMG/M
3300005364\|Ga0070673_102381318	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	503	Open in IMG/M
3300005366\|Ga0070659_100107070	All Organisms → cellular organisms → Bacteria	2254	Open in IMG/M
3300005441\|Ga0070700_100550160	All Organisms → cellular organisms → Bacteria	896	Open in IMG/M
3300005444\|Ga0070694_100792891	All Organisms → cellular organisms → Bacteria	776	Open in IMG/M
3300005455\|Ga0070663_100990977	All Organisms → cellular organisms → Bacteria	730	Open in IMG/M
3300005564\|Ga0070664_100475891	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1149	Open in IMG/M
3300005616\|Ga0068852_100822723	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Balneolaeota → Balneolia → Balneolales → Balneolaceae → Aliifodinibius	944	Open in IMG/M
3300005719\|Ga0068861_100833821	All Organisms → cellular organisms → Bacteria → Acidobacteria	868	Open in IMG/M
3300005764\|Ga0066903_101793204	All Organisms → cellular organisms → Bacteria → Acidobacteria	1172	Open in IMG/M
3300005843\|Ga0068860_102022461	All Organisms → cellular organisms → Bacteria	598	Open in IMG/M
3300006031\|Ga0066651_10210590	All Organisms → cellular organisms → Bacteria	1030	Open in IMG/M
3300006031\|Ga0066651_10398837	All Organisms → cellular organisms → Bacteria	734	Open in IMG/M
3300006046\|Ga0066652_101897147	All Organisms → cellular organisms → Bacteria	535	Open in IMG/M
3300006049\|Ga0075417_10560904	Not Available	578	Open in IMG/M
3300006791\|Ga0066653_10044066	All Organisms → cellular organisms → Bacteria	1828	Open in IMG/M
3300006804\|Ga0079221_10545154	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	766	Open in IMG/M
3300006844\|Ga0075428_100422095	Not Available	1429	Open in IMG/M
3300006854\|Ga0075425_102072929	All Organisms → cellular organisms → Bacteria	635	Open in IMG/M
3300006871\|Ga0075434_100024366	All Organisms → cellular organisms → Bacteria	5916	Open in IMG/M
3300007004\|Ga0079218_11764505	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	690	Open in IMG/M
3300007076\|Ga0075435_101924370	All Organisms → cellular organisms → Bacteria	519	Open in IMG/M
3300009094\|Ga0111539_11790630	All Organisms → cellular organisms → Bacteria → Acidobacteria	712	Open in IMG/M
3300009098\|Ga0105245_10829870	All Organisms → cellular organisms → Bacteria → Acidobacteria	964	Open in IMG/M
3300009100\|Ga0075418_12020348	Not Available	628	Open in IMG/M
3300009100\|Ga0075418_12104684	All Organisms → cellular organisms → Bacteria → Acidobacteria	615	Open in IMG/M
3300009147\|Ga0114129_10112515	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3754	Open in IMG/M
3300009156\|Ga0111538_10682503	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1302	Open in IMG/M
3300010041\|Ga0126312_11041834	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	600	Open in IMG/M
3300010373\|Ga0134128_10438577	All Organisms → cellular organisms → Bacteria	1458	Open in IMG/M
3300010375\|Ga0105239_11758883	All Organisms → cellular organisms → Bacteria → Acidobacteria	718	Open in IMG/M
3300010375\|Ga0105239_12173673	Not Available	645	Open in IMG/M
3300010375\|Ga0105239_13582691	All Organisms → cellular organisms → Bacteria → Acidobacteria	505	Open in IMG/M
3300010398\|Ga0126383_12100186	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	652	Open in IMG/M
3300010401\|Ga0134121_10801617	Not Available	905	Open in IMG/M
3300012011\|Ga0120152_1070545	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1057	Open in IMG/M
3300012897\|Ga0157285_10096273	All Organisms → cellular organisms → Bacteria → Acidobacteria	807	Open in IMG/M
3300012899\|Ga0157299_10153555	All Organisms → cellular organisms → Bacteria → Acidobacteria	653	Open in IMG/M
3300012903\|Ga0157289_10398980	All Organisms → cellular organisms → Bacteria → Acidobacteria	516	Open in IMG/M
3300012916\|Ga0157310_10250233	All Organisms → cellular organisms → Bacteria → Acidobacteria	670	Open in IMG/M
3300012916\|Ga0157310_10305491	All Organisms → cellular organisms → Bacteria → Acidobacteria	626	Open in IMG/M
3300012939\|Ga0162650_100044152	All Organisms → cellular organisms → Bacteria → Acidobacteria	717	Open in IMG/M
3300012955\|Ga0164298_11326946	Not Available	552	Open in IMG/M
3300012985\|Ga0164308_10907250	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Janthinobacterium → Janthinobacterium lividum	777	Open in IMG/M
3300013308\|Ga0157375_13632135	All Organisms → cellular organisms → Bacteria → Acidobacteria	513	Open in IMG/M
3300014969\|Ga0157376_10735618	All Organisms → cellular organisms → Bacteria → Acidobacteria	994	Open in IMG/M
3300014969\|Ga0157376_10989523	All Organisms → cellular organisms → Bacteria → Acidobacteria	863	Open in IMG/M
3300015200\|Ga0173480_10183376	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1096	Open in IMG/M
3300015371\|Ga0132258_13787795	All Organisms → cellular organisms → Bacteria → Acidobacteria	1030	Open in IMG/M
3300015374\|Ga0132255_100876449	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1341	Open in IMG/M
3300015374\|Ga0132255_106218361	All Organisms → cellular organisms → Bacteria → Acidobacteria	505	Open in IMG/M
3300018067\|Ga0184611_1172317	All Organisms → cellular organisms → Bacteria → Acidobacteria	769	Open in IMG/M
3300018083\|Ga0184628_10201363	Not Available	1042	Open in IMG/M
3300018083\|Ga0184628_10215235	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1006	Open in IMG/M
3300018466\|Ga0190268_10911361	All Organisms → cellular organisms → Bacteria → Acidobacteria	685	Open in IMG/M
3300018466\|Ga0190268_11719301	All Organisms → cellular organisms → Bacteria → Acidobacteria	560	Open in IMG/M
3300018476\|Ga0190274_10358163	All Organisms → cellular organisms → Bacteria	1392	Open in IMG/M
3300018476\|Ga0190274_11831708	All Organisms → cellular organisms → Bacteria → Acidobacteria	702	Open in IMG/M
3300018481\|Ga0190271_10407330	All Organisms → cellular organisms → Bacteria → Acidobacteria	1456	Open in IMG/M
3300018481\|Ga0190271_12182727	All Organisms → cellular organisms → Bacteria → Acidobacteria	660	Open in IMG/M
3300019249\|Ga0184648_1165372	Not Available	542	Open in IMG/M
3300019361\|Ga0173482_10535597	All Organisms → cellular organisms → Bacteria → Acidobacteria	576	Open in IMG/M
3300021078\|Ga0210381_10294895	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	584	Open in IMG/M
3300022756\|Ga0222622_11168584	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	566	Open in IMG/M
3300022756\|Ga0222622_11188696	Not Available	561	Open in IMG/M
3300022756\|Ga0222622_11406188	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	513	Open in IMG/M
3300023064\|Ga0247801_1042796	All Organisms → cellular organisms → Bacteria → Acidobacteria	676	Open in IMG/M
3300023073\|Ga0247744_1104103	All Organisms → cellular organisms → Bacteria → Acidobacteria	510	Open in IMG/M
3300025904\|Ga0207647_10547679	All Organisms → cellular organisms → Bacteria → Acidobacteria	642	Open in IMG/M
3300025907\|Ga0207645_10399815	All Organisms → cellular organisms → Bacteria → Acidobacteria	924	Open in IMG/M
3300025918\|Ga0207662_10763351	All Organisms → cellular organisms → Bacteria → Acidobacteria	680	Open in IMG/M
3300025923\|Ga0207681_10405428	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1102	Open in IMG/M
3300025930\|Ga0207701_10927643	All Organisms → cellular organisms → Bacteria → Acidobacteria	728	Open in IMG/M
3300025937\|Ga0207669_10377219	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1104	Open in IMG/M
3300025945\|Ga0207679_10396526	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1213	Open in IMG/M
3300025960\|Ga0207651_10671119	All Organisms → cellular organisms → Bacteria	911	Open in IMG/M
3300025960\|Ga0207651_11132196	All Organisms → cellular organisms → Bacteria	702	Open in IMG/M
3300025960\|Ga0207651_12148855	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	501	Open in IMG/M
3300025981\|Ga0207640_10761923	All Organisms → cellular organisms → Bacteria	835	Open in IMG/M
3300026075\|Ga0207708_10344845	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1221	Open in IMG/M
3300026116\|Ga0207674_11568922	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	627	Open in IMG/M
3300026121\|Ga0207683_11140436	All Organisms → cellular organisms → Bacteria	723	Open in IMG/M
3300026142\|Ga0207698_10435383	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1262	Open in IMG/M
3300026306\|Ga0209468_1031795	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1841	Open in IMG/M
3300027873\|Ga0209814_10315953	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	681	Open in IMG/M
3300027880\|Ga0209481_10501267	All Organisms → cellular organisms → Bacteria	627	Open in IMG/M
3300027886\|Ga0209486_10656406	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	671	Open in IMG/M
3300027907\|Ga0207428_10091460	All Organisms → cellular organisms → Bacteria → Acidobacteria	2362	Open in IMG/M
3300028379\|Ga0268266_12071557	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	542	Open in IMG/M
3300028381\|Ga0268264_10911276	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Balneolaeota → Balneolia → Balneolales → Balneolaceae → Aliifodinibius	883	Open in IMG/M
3300031548\|Ga0307408_102147040	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	539	Open in IMG/M
3300031562\|Ga0310886_10505515	All Organisms → cellular organisms → Bacteria → Acidobacteria	730	Open in IMG/M
3300031716\|Ga0310813_11308909	Not Available	670	Open in IMG/M
3300031716\|Ga0310813_11488272	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	630	Open in IMG/M
3300031824\|Ga0307413_10585696	All Organisms → cellular organisms → Bacteria → Acidobacteria	911	Open in IMG/M
3300031854\|Ga0310904_10411667	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	888	Open in IMG/M
3300031944\|Ga0310884_10676883	All Organisms → cellular organisms → Bacteria → Acidobacteria	622	Open in IMG/M
3300032017\|Ga0310899_10504116	All Organisms → cellular organisms → Bacteria → Acidobacteria	595	Open in IMG/M
3300032126\|Ga0307415_102031190	All Organisms → cellular organisms → Bacteria	560	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	53.04%
Host-Associated	Host-Associated	46.96%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	46.96%
Terrestrial	Environmental → Terrestrial	46.09%
Aquatic	Environmental → Aquatic	6.96%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	45.22%
Rhizosphere	Host-Associated → Plants → Rhizosphere	35.65%
Rhizoplane	Host-Associated → Plants → Rhizoplane	11.30%
Sediment	Environmental → Aquatic → Sediment	5.22%
Freshwater	Environmental → Aquatic → Freshwater	1.74%
Agricultural Field	Environmental → Terrestrial → Agricultural Field	0.87%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	40.00%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	20.00%
Soil	Host-Associated → Plants → Rhizosphere → Soil	15.65%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	6.96%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	5.22%
Loam	Environmental → Terrestrial → Soil → Loam	5.22%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	3.48%
Sediment	Environmental → Aquatic → Freshwater → Sediment	1.74%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	0.87%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.87%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	20.00%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	19.13%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	15.65%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	10.43%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	6.96%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	6.09%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	5.22%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	3.48%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.48%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	3.48%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	1.74%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.87%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.87%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.87%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	0.87%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.87%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	15.65%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	11.30%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	7.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	5.22%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	5.22%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	4.35%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	4.35%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	3.48%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	3.48%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	2.61%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	2.61%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	2.61%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.61%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	2.61%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	2.61%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	2.61%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	2.61%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.61%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	1.74%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.74%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.74%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.87%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.87%
Sugarcane Root And Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil	0.87%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	0.87%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	0.87%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.87%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.87%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.87%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	0.87%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	0.87%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.87%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.87%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000559	Amended soil microbial communities from Kansas Great Prairies, USA - control no BrdU total DNA F1.4 TC clc assemly	Environmental	Open in IMG/M
3300000891	Soil microbial communities from Great Prairies - Wisconsin, Continuous corn soil	Environmental	Open in IMG/M
3300003319	Sugarcane bulk soil Sample L2	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005293	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1	Host-Associated	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005344	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG	Host-Associated	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005353	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG	Host-Associated	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated	Open in IMG/M
3300005366	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG	Host-Associated	Open in IMG/M
3300005441	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG	Environmental	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005455	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG	Host-Associated	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005616	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2	Host-Associated	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300006031	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Angelo_100	Environmental	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006791	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300007004	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost	Environmental	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300010041	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot104A	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300012011	Permafrost microbial communities from Nunavut, Canada - A30_65cm_6M	Environmental	Open in IMG/M
3300012897	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S074-202C-1	Environmental	Open in IMG/M
3300012899	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S058-202B-2	Environmental	Open in IMG/M
3300012903	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S134-311R-1	Environmental	Open in IMG/M
3300012916	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S213-509R-2	Environmental	Open in IMG/M
3300012939	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t1i015	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015200	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S209-509C-1 (version 2)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300018067	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_coex	Environmental	Open in IMG/M
3300018083	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5_b1	Environmental	Open in IMG/M
3300018466	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 T	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300019249	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019361	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 (version 2)	Environmental	Open in IMG/M
3300021078	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_coex redo	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300023064	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S001-104B-6	Environmental	Open in IMG/M
3300023073	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S154-409C-5	Environmental	Open in IMG/M
3300025904	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes)	Host-Associated	Open in IMG/M
3300025907	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025918	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025923	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025930	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Environmental	Open in IMG/M
3300025937	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025960	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025981	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026075	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026116	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026121	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026142	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026306	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102 (SPAdes)	Environmental	Open in IMG/M
3300027873	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027880	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3 (SPAdes)	Host-Associated	Open in IMG/M
3300027886	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost (SPAdes)	Environmental	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300028379	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300031548	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3	Host-Associated	Open in IMG/M
3300031562	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D3	Environmental	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300031824	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2	Host-Associated	Open in IMG/M
3300031854	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D1	Environmental	Open in IMG/M
3300031944	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D1	Environmental	Open in IMG/M
3300032017	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D4	Environmental	Open in IMG/M
3300032126	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2	Host-Associated	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
F14TC_1013849841	3300000559	Soil	AIITGRATTLQLANPNDPITNVAPVFDPVTGLLNNGVNLTSTGAVSPNRSQPKNAGFGVANNYQAARSVQLQIRFSF*
JGI10214J12806_101336732	3300000891	Soil	RNIQLRADLFNAPNQAIITGRNTTLQLSNPADPVTNVAPVFDPVTGLLNNGVNRTPTGALSPDRSKPKNAGFGVANNYQAPRNVQLQVRFSF*
soilL2_102912051	3300003319	Sugarcane Root And Bulk Soil	NTTLVLASPNDPVTNVAPVFDPVTGLLNNGVNLLPNGAVSPDRSKPKNAGFGVATAYQTPRNVQLQVRFSF*
Ga0062593_1017236271	3300004114	Soil	DCFSQTLDLSIARNIRMPKGRNIQLRVDMFNAPNMHGITGRNTTLQLQSPADPVTNIAPLYDPITGLLNNGVNLLSTGAVSPNRSQPKNAGFGMATGYQAPRTVQAQIRFSF*
Ga0062593_1028743142	3300004114	Soil	NTTLPLSSPNDPVTNVSPVFDPITGLLNNGVNLTSTGAVSPDRSKPKNAGFGVANAYQAPRNIQIQVRFSF*
Ga0062589_1023353922	3300004156	Soil	DMFNAPNQAIITSRNTTLTLSSPTDSVTNQAPAFDPVTGLLNNGVNLTSTGGLSPNRSQPKNAVFGSVTGYQNPRTVQAQIRFSF*
Ga0062590_1004779801	3300004157	Soil	IARNIRLPGGRNIQVRADLFNAPNAAGITARNTTLQMPNPTDPITNSAPVFDPVTGLLNDGINLTPTGTRSTDRSKPKNAGFGVATGYQTPRNVQLQVRFSF*
Ga0062592_1022986542	3300004480	Soil	LPLSSPSDPVTIVSPVFDPVTGLLNNGVNLTSTGAVSPDRSKPKNAGFGVANAYQNPRNIQIQVKFSF*
Ga0062591_1018297271	3300004643	Soil	RNIRLPKGRNIQLRADLFNAPNMAAITGRNTTLVLASPTAPITNVQPVFDPITGLLNNGVNLLSTGALSPNRSQPKNAGFGVANGYQAPRNVQVQIRFSF*
Ga0065715_104050042	3300005293	Miscanthus Rhizosphere	GGKNLQLRADLFNAPNAAAITNRNTTLMLSNPNDPVTNAAPVFDPVTGLLNNGVNLTSTGAVSPDRSKPKNAGFGVATAYQTPRNVQLQVRFSF*
Ga0070676_106635162	3300005328	Miscanthus Rhizosphere	CFVSAFDLSIARNIRLGGGKNLQLRADLFNAPNAAAITNRNTTLMLSNPNDPVTNAAPVFDPVTGLLNNGVNLTSTGAVSPDRSKPKNAGFGVATAYQTPRNVQLQVRFSF*
Ga0070661_1012094981	3300005344	Corn Rhizosphere	TTLVLSNPNDPVTNAAPVFDPITGLLNNGVNLTSTGAVSPDRSKPKNAGFGVANAYQSPRNVQLQVKFSF*
Ga0070668_1019957141	3300005347	Switchgrass Rhizosphere	AAGVTGRNGTFVMSSPSDPVTNAAPVFDPVTGLLNNGVNLLPNGSVSPDRSKPKNAGFGVANGYQAPRNVQLQVRFSF*
Ga0070669_1011630082	3300005353	Switchgrass Rhizosphere	ASSADPITNVVPVFDPITGLLNDGKNLLSTGALSTDRSLPKNAGFGVVTSYQAGRSIQAQIRFSF*
Ga0070675_1009725452	3300005354	Miscanthus Rhizosphere	SALDLSIARNIRLGGGKTLQLRADLFNAPNAAGITNRNTTLVLSNPNDPVTNAAPVFDPITGLLNNGVNLTSTGAVSPDRSKPKNAGFGVANAYQSPRNVQLQVKFSF*
Ga0070673_1005503082	3300005364	Switchgrass Rhizosphere	AFNRAGITGRNTTLQLNTPADPVTNVQPAFDPVTGLLNDGVNLTSTGAVSPNRSQPKNAGFGVANAFQAPRSIQLQVRFAF*
Ga0070673_1023813182	3300005364	Switchgrass Rhizosphere	PNAAGITGRASTLTMSNPSDPVTNVAPVFDPVTGQLNNGVNLLPSGAVSPDRSKPKNAGFGVANGYQAPRNVQLQVRFSF*
Ga0070659_1001070703	3300005366	Corn Rhizosphere	MSSPSDPVTNVAPVFDPVTGLLNNAVNLLPNASVSPDRSKPKNAGFGVATGYQAPRNVQLQVRFSF*
Ga0070700_1005501601	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	FDLSIARNIRLGGGKNLQLRADLFNAPNAAAITNRNTTLMLSNPNDPVTNAAPVFDPVTGLLNNGVNLTSTGAVSPDRSKPKNAGFGVATAYQTPRNVQLQVRFSF*
Ga0070694_1007928912	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	RAGITGRETTLRLSSPNDPITNTQPVFDPVTGLLNNGVNLTSTGAVSPDRSKPKNAGFGVANAYQTPRSVQLQVRFSF*
Ga0070663_1009909772	3300005455	Corn Rhizosphere	GITGRNTTLQLNTPADPVTNVQPAFDPVTGLLNDGVNLTSTGAVSPNRSQPKNAGFGVANAFQAPRSIQLQVRFAF*
Ga0070664_1004758912	3300005564	Corn Rhizosphere	LQLRADLFNAPNAAGITNRNTTLVLSNPNDPVTNAAPVFDPITGLLNNGVNLTSTGAVSPDRSKPKNAGFGVANAYQSPRNVQLQVKFSF*
Ga0068852_1008227232	3300005616	Corn Rhizosphere	IPLRGGRNIQLRADLFNAPNQAIITGRNTTLALSTPADPVTNVAPVFDPITGLLNNGVNLTSTGAVSPDRSKPKNAGFGVANAYQAPRNIQVQVRFSF*
Ga0068861_1008338212	3300005719	Switchgrass Rhizosphere	LSIARNIRLGGGKNLQLRADLFNAPNAAAITNRNTTLMLSNPNDPVTNAAPVFDPVTGLLNNGVNLTSTGAVSPDRSKPKNAGFGVATAYQTPRNVQLQVRFSF*
Ga0066903_1017932041	3300005764	Tropical Forest Soil	LAIARNIRLSGGRTLQLRADLFNAPNAAGITARNSTFVMSSPSDPVTNAAPVFDPVTGKLNDGQNLTSTGAVSPDRSKPKNAGFGVANAYQAPRSVQLQIKFSF*
Ga0068860_1020224611	3300005843	Switchgrass Rhizosphere	QAIITGRNTTFVMSSPTDPITNAQPVFDPVTGLLNNGINLLSTGAVSPNRSLPKNAGFGVANAYQAPRSVQVQIRFSF*
Ga0066651_102105901	3300006031	Soil	LRADLFNATNRAGVTGRNTTLQLSSPSDPVTNVAPVFDPVTGKLNDGVNLTSTGALSADRSKPKNAGFGVANAYQAPRNIQIQVRFSF*
Ga0066651_103988371	3300006031	Soil	GITGRNTTLPLSSPSDPVTIVSPVFDPITGFLNNGVNLTSTGAVSPDRSKPKNAGFGVANAYQTPRNIQIQVKFSF*
Ga0066652_1018971472	3300006046	Soil	TGRNTTLPLSSPSDPVTIVSPVFDPITGLLNNGVNLTSTGAVSPDRSKPKNAGFGVANAYQTPRNIQIQVKFSF*
Ga0075417_105609042	3300006049	Populus Rhizosphere	RNTTLVLSNPNDPVTNVAPVFDPVTGLLNNGVNLTSTGAVSPDRSKPKNAGFGVATAYQTPRNVQLQVRFSF*
Ga0066653_100440662	3300006791	Soil	TNRAGVTGRNTTLQLSSPSDPVTNVAPVFDPVTGKLNDGVNLTSTGALSADRSKPKNAGFGVANAYQAPRNIQIQVRFSF*
Ga0079221_105451542	3300006804	Agricultural Soil	GRNTTLQLSNPNDPVTNVAPVFDPVTGLLNNGVNLTSTGAVSPDRSKPKNAGFGVANAYQAPRNVQVQVRFSF*
Ga0075428_1004220952	3300006844	Populus Rhizosphere	PNDPVTNAAPVFDPVTGLLNNGVNLTSTGAVSPDRSKPKNAGFGVATAYQTPRNVQLQVRFSF*
Ga0075425_1020729292	3300006854	Populus Rhizosphere	MFNAFNRAGITGRQTTLQLASPTAPGTNTQPVFDPVTGVLYNGVNLTSTGAVSPNRSLPKNAGFGVANAFQAPRTVQLQLRFSF*
Ga0075434_1000243664	3300006871	Populus Rhizosphere	RNSTLTLASPSDPVTNVAPVFDPVTGLLNDGVNLLPSGAVSPDRSKPKNAGFGVATAYQAPRNVQLQVRFSF*
Ga0079218_117645051	3300007004	Agricultural Soil	IARNIRLPGNRTIQIRADMFNAFNRAGITGRNTTLVLSSPQDPLTNVQPAFDPITGLLNDGVNLTSTGALSPNRSQPKNAAFGVANAYQAPRSVQLQIRFTF*
Ga0075435_1019243702	3300007076	Populus Rhizosphere	GITGRETTLRLSSPNDPITNTQPVFDPVTGLLNNGVNLTSTGAVSPDRSKPKNAGFGVASAYQTPRSVQLQVRFSF*
Ga0111539_117906302	3300009094	Populus Rhizosphere	PNSAGITGRNTTLVMASPADPSTNVAPVFDPTTGLLNDGVNKLPNGQTSPDRSKPKNAGFGVANGYQTPRNIQLQIRFSF*
Ga0105245_108298702	3300009098	Miscanthus Rhizosphere	LNTPADPVTNVQPAFDPVTGLLNDGVNLTSTGAVSPNRSQPKNAGFGVANAFQAPRSIQLQVRFAF*
Ga0075418_120203482	3300009100	Populus Rhizosphere	RADLFNAPNSAAITNRNTTLVLSNPNDPVTNVAPVFDPVTGLLNNGVNLLPNGAVSPDRSKPKNAGFGVATAYQTPRNVQLQVRFSF*
Ga0075418_121046842	3300009100	Populus Rhizosphere	RNTTLQLNTPADPLTNVQPAFDPVTGLLNDGVNLTSTGAVSPNRSQPKNAAFGVANGFQAPRSIQLQVRFAF*
Ga0114129_101125153	3300009147	Populus Rhizosphere	TNRNTTLVLSNPNDPVTNVAPVFDPVTGLLNNGVNLTSTGAVSPDRSKPKNAGFGVATAYQTPRNVQLQVRFSF*
Ga0111538_106825032	3300009156	Populus Rhizosphere	GGRSIQLRADMFNAFNRAGITGRQTTLQLQSPSDPLTNVQPVFDPTTGLLNDGVNLLPNGTKSPNRSQPKNAGFGVANAFQAARSVQLQIRFSF*
Ga0126312_110418342	3300010041	Serpentine Soil	FNATNRAGITGRNTTLPLSSPADPVTIVAPVFDPVTGLLNNGVNLTSTGAVSPDRSKPKNAGFGVANAYQAPRNIQIQVRFSF*
Ga0134128_104385771	3300010373	Terrestrial Soil	MSSPSDPVTNVAPVFDPVTGLLNNAVNLLPNASVSPDRSKPKNAGFGVATGYQAPRNVQL
Ga0105239_117588831	3300010375	Corn Rhizosphere	ITGRNTTLALSTPADPVTNVAPVFDPITGLLNNGVNLTSTGAVSPDRSKPKNAGFGVANAYQAPRNIQVQVRFSF*
Ga0105239_121736731	3300010375	Corn Rhizosphere	GRNIQVRADLFKAPNAAGITGRNATLTMSSPSDPVTNVAPVFDPVTGLLNNAVNLLPNASVSPDRSKPKNAGFGVATGYQAPRNVQLQVRFSF*
Ga0105239_135826911	3300010375	Corn Rhizosphere	RLGGGKNLQLRADLFNAPNAAAITNRNTTLMLSNPNDPVTNAAPVFDPVTGLLNNGVNLTSTGAVSPDRSKPKNAGFGVATAYQTPRNVQLQVRFSF*
Ga0126383_121001862	3300010398	Tropical Forest Soil	DMFNAPNQAGITGRNTTLVLSSPTDPITNQAPVYDPVTGLLNNGVNLLPNGQKSTDRSLPKNAGFGVANAYQAARTIQIQARFSF*
Ga0134121_108016172	3300010401	Terrestrial Soil	RSICRSRNIPLPGGRNIQVRADLFKAPNAAGITGRNATLTMSSPSDPVTNVAPVFDPVTGLLNNAVNLLPNASVSPDRSKPKNAGFGVATGYQAPRNVQLQVRFSF*
Ga0120152_10705451	3300012011	Permafrost	LSGPGDPITNQAPVFDPTTGLLNNGVNLLSTGALSTNRSQPKNAGFGEVNAYQSPRTVQMQIRFSF*
Ga0157285_100962731	3300012897	Soil	GYLRGCFLSALDLSLARNIRLGGGKTLQLRADLFNAPNAAGITNRNTTLVLSNPNDPVTNAAPVFDPITGLLNNGVNLTSTGAVSPDRSKPKNAGFGVANAYQSPRNVQLQVKFSF*
Ga0157299_101535551	3300012899	Soil	TLQLRADLFNAPNAAGITNRNTTLVLSNPNDPVTNAAPVFDPITGLLNNGVNLTSTGAVSPDRSKPKNAGFGVANAYQAPRNIQIQVRFSF*
Ga0157289_103989801	3300012903	Soil	TTLPLSSPSDPVTIVSPVFDPITGLLNDGVNLTSTGAVSPDRSKPKNAGFGVANAYQAPRTMQLQLRFSF*
Ga0157310_102502331	3300012916	Soil	QLRVDMFNAPNSAGITNRNTTLVMASPSDPITNVAPVFDPTTGLLNDGVNKLPNGQTSPDRSKPKNAGFGVASGYQPPRNIQLQIRFSF*
Ga0157310_103054911	3300012916	Soil	NAAGITNRNTTLSMTTPSAPTSNAAPVFDPVTGLLNDGVNLTSTGAVSTDRSKPKNAGFGVATGYQAPRNIQVQVRFSF*
Ga0162650_1000441522	3300012939	Soil	DLFNAFNRAGITGRNTTLQLNTPADALTNVQPAFDPITGLLNDGVTLTSTGAVSPNRSQPTNAGFGVANAFQAPRSIQLQIRFTF*
Ga0164298_113269462	3300012955	Soil	GRNIQIRADLFNAPNAAGVTNRNATLVMSSPSDPVTNAAPVFDPVTGLLNNGVNLLPNGAVSPDRSKPKNAGCGVATAYQAPRNVQLQIRFSF*
Ga0164301_101702321	3300012960	Soil	SDPVTNAAPVFDPVTGLLNNGVNLLPNGAVSPDRSKPKNAGFGVATAYQAPRNVQLQIRFSF*
Ga0164308_109072501	3300012985	Soil	CFASALDLSIARNIPIKGGRNIQIRADLFNAPNAAGVTNRNATLVMSSPSDPVTNAAPVFDPVTGLLNNGVNLLPNGAVSPDRSKPKNAGFGVATAYQAPRNVQLQIRFSF*
Ga0157375_136321351	3300013308	Miscanthus Rhizosphere	QVRADLFNAPNQAIITGRNTTLQLSNPADPVTNVAPVFDPVTGLLNNGVNLTSTGAVSPDRSKPKNAGFGVANAYQAPRNVQIQVRFSF*
Ga0157376_107356181	3300014969	Miscanthus Rhizosphere	RNTTLQLNTPADPVTNVQPAFDPVTGLLNDGVNLTSTGAVSPNRSQPKNAGFGVANAFQAPRSIQLQVRFAF*
Ga0157376_109895231	3300014969	Miscanthus Rhizosphere	DMFNAPNSAGITNRNTTLVMASPSDPITNVAPVFDPTTGLLNDGVNKLPNGQTSADRSKPKNAGFGVASAYQTPRNIQLQIRFSF*
Ga0173480_101833762	3300015200	Soil	GRNTTLPLSSPSDPVTIVSPVFDPITGLLNDGVNLTSTGAVSPDRSKPKNAGFGVANAYQNPRNIQIQVKFSF*
Ga0132258_137877951	3300015371	Arabidopsis Rhizosphere	RNIQLRVDLFNAWNQAIITGRATTLSLANPTAPTTNTAPVFDPITGLLNNGINLLSTGAVSPNRSQPKNAGFGVANNYQSPRTVQATLRFSF*
Ga0132255_1008764491	3300015374	Arabidopsis Rhizosphere	TPADPLTNVQPAFDPVTGLLNDGVNLTSTGAVSPNRSQPKNAGFGVANAFQAPRSIQLQIRFAF*
Ga0132255_1062183611	3300015374	Arabidopsis Rhizosphere	QTLDLSIARNIRLGGNRNIQLRVDMFNATNRAGITGRNTTLQLSSPSDPVTNVAPVFDPVTGLLNNGVNLTSTGAVSPDRSKPKNAGFGVANAYQQERRVQLQIRFSF*
Ga0184611_11723172	3300018067	Groundwater Sediment	LGGGRSIQLRVDMFNAFNRAGITGRNTTLQLTNPNDPITNNAPVFDPITGLLNDGVNPTSTGAVGTDRSKPKNAGFGVANAYQAPRNVQFQVRFSF
Ga0184628_102013632	3300018083	Groundwater Sediment	AITGRATTLSLASPAAPITNIAPVFDPITGLLNDGKNLTSTGAVSPNRSQPKNAGFGVANGYQAPRSVQLQVRFSF
Ga0184628_102152351	3300018083	Groundwater Sediment	AITGRATTLSLASPAAPITNIAPVFDPITGLLNDGKNLTSTGAVSPNRSQPKNAGFGVANAYQAPRSVQLQVRFSF
Ga0190268_109113611	3300018466	Soil	QLNTPGDPLTNVQPAFDPVTGLLNDGVNLTSTGALSPNRSQPKNAGFGVANAFQTPRSIQLQIRFTF
Ga0190268_117193012	3300018466	Soil	WGDLFNATNRAGITGRNTTLPLSSPSDPVTIVAPVFDPITGLLNNGVNLTATGAVSPDRSKPKNAGFGVANAYQAPRNIQIQVSFRF
Ga0190274_103581631	3300018476	Soil	TGRNTTLVMASPADPVTNVAPVFDPTTGLLNDGVNKLPNGQTSPDRSKPKNAGFGVANGYQTPRNIQLQIRFSF
Ga0190274_118317082	3300018476	Soil	LGGGRSIQLRVDMFNAPNMAAITGRQTTLVLASPADPNTNVAPVFDPVTGLLNNGINLLSNGTVSPNRSQPKNAGFGVANNYQNPRSIQAQIRFSF
Ga0190271_104073301	3300018481	Soil	PAPRSVGLESGNSYLKGCFQQVLDLSIARNIRLGGGRNIQLRVDMFNAPNMAAITGRQTTLTLASPADPNTNVAPVFDPVTGLLNNGVNLLPSGAVSPNRSQPKNAGFGVANNYQNPRSIQAQIRFSF
Ga0190271_121827272	3300018481	Soil	RADLFNATNRAGITGRNTTLALSNPADPITSVAPVFDPVTGLLNDGVNLTSTGAVSPDRSKPKNAGFGVANAYQAPRNIQIQVRFSF
Ga0184648_11653721	3300019249	Groundwater Sediment	ADLFNAPNAAGITSRNTTLALSSPSDPITNVAPVFDPVTGLLNDGVNLTSTGARSTDRSKPKNAGFGVATGYQTPRNVQLQVRFSF
Ga0173482_105355971	3300019361	Soil	MHGCFQSTLDLAIARNIRLGGGRNIQLRVDMFNAPNSAYVNGRNTTLVLTNPTDPLTNAAPVFDPITGLLNDGKNLTSTGAVSVNRSQPKNAGFGVATAYQAARSIQGQIRFTF
Ga0210381_102948951	3300021078	Groundwater Sediment	NSAAFQGAVAGSVGLESGADYLHGCFSQALDLSIARNIRLGGGRSIQLRVDMFNALNRSGITGRNTTLQLTNPNDPITNNAPVFDPITGLLNDGVNLTSTGAVSTDRSKPKNAGFGVANAYQAPRNVQFQVRFSF
Ga0222622_111685841	3300022756	Groundwater Sediment	SIQLRVDMFNAFNRAGITGRNTTLQLTNPSDPITNNAPVFDPITGLLNDGVNLTSTGAVSTDRSKPKNAGFGVANAYQAPRNVQFQVRFSF
Ga0222622_111886962	3300022756	Groundwater Sediment	LHGITGRNTTLQLQTPADPVTNIAPLYDPITGLLNNGVNLLSTGAVSPNRSQPKNAGFGMANAYQAPRTVQAQIRFSF
Ga0222622_114061882	3300022756	Groundwater Sediment	TLALSSPSDPVTNVAPVFDPITGLLNNGVNLTSTGALSPDRSKPKNAGFGVANAYQAPRNVQVQVRFSF
Ga0247801_10427962	3300023064	Soil	GKNLQLRADLFNAPNAAAITNRNTTLMLSNPNDPVTNAAPVFDPVTGLLNNGVNLTSTGAVSPDRSKPKNAGFGVATAYQTPRNVQLQVRFSF
Ga0247744_11041031	3300023073	Soil	GCFVSAFDLSIARNIRLGGGKNLQLRADLFNAPNAAAITNRNTTLMLSNPNDPVTNAAPVFDPVTGLLNNGVNLTSTGAVSPDRSKPKNAGFGVATAYQTPRNVQLQVRFSF
Ga0207647_105476792	3300025904	Corn Rhizosphere	LFNAPNAAAITNRNTTLMLSNPNDPVTNAAPVFDPVTGLLNNGVNLTSTGAVSPDRSKPKNAGFGVATAYQTPRNVQLQVRFSF
Ga0207645_103998152	3300025907	Miscanthus Rhizosphere	TTLQLNTPADPVTNVQPAFDPVTGLLNDGVNLTSTGAVSPNRSQPKNAGFGVANAFQAPRSIQLQVRFAF
Ga0207662_107633511	3300025918	Switchgrass Rhizosphere	VGLESGASYLHGCFASALDLSIARNIPLPGGRNIQIRADLFNAPNAAGITGRASTLTMSNPSDPVTNVAPVFDPVTGQLNNGVNLLSTGAVSPDRSKPKNAGFGVATASCCGHWPVLLRSLLLPFCSRLS
Ga0207681_104054281	3300025923	Switchgrass Rhizosphere	NAAAILNRNTTLVLTSPNDPVTNAAPVFDPVTGLLNNGVNLTSTGAVSPDRSKPKNAGFGVANAYQAPRNVQLQVKFSF
Ga0207701_109276432	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	RTLQLRADLFNATNRAGITGRNTTLPLSSPSDPVTIVSPVFDPITGLLNNGVNLTSTGAVSPDRSKPKNAGFGVANAYQTPRNIQIQVKFSF
Ga0207669_103772192	3300025937	Miscanthus Rhizosphere	QLHTPADPVTNVQPAFDPVTGLLNDGVNLTSTGAVSPNRSQPKNAGFGVANAFQAPRSIQLQVRFAF
Ga0207679_103965262	3300025945	Corn Rhizosphere	LQLRADLFNAPNAAGITNRNTTLVLSNPNDPVTNAAPVFDPITGLLNNGVNLTSTGAVSPDRSKPKNAGFGVANAYQSPRNVQLQVKFSF
Ga0207651_106711191	3300025960	Switchgrass Rhizosphere	NAFNRAGITGRNTTLQLNTPADPVTNVQPAFDPVTGLLNDGVNLTSTGAVSPNRSQPKNAGFGVANAFQAPRSIQLQVRFAF
Ga0207651_111321962	3300025960	Switchgrass Rhizosphere	GRNTTLQLTNPNDPITNNAPVFDPITGLLNDGVNLTSTGAVSTDRSKPKNAGFGVANAYQAPRNVQFQVRFSF
Ga0207651_121488552	3300025960	Switchgrass Rhizosphere	ASTLTMSNPSDPVTNVAPVFDPVTGQLNNGVNLLPSGAVSPDRSKPKNAGFGVANGYQAPRNVQLQVRFSF
Ga0207640_107619231	3300025981	Corn Rhizosphere	AFNRAGITGRNTTLQLNTPADPVTNVQPAFDPVTGLLNDGVNLTSTGAVSPNRSQPKNAGFGVANAFQAPRSIQLQVRFAF
Ga0207708_103448451	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	FDLSIARNIRLGGGKNLQLRADLFNAPNAAAITNRNTTLMLSNPNDPVTNAAPVFDPVTGLLNNGVNLTSTGAVSPDRSKPKNAGFGVATAYQTPRNVQLQVRFSF
Ga0207674_115689221	3300026116	Corn Rhizosphere	SGTNYLKDCFSQTLDLSIARNIRMPKGRNIQLRVDMFNAPNMHGITGRNTTLQLQSPADPVTNIAPLYDPITGLLNNGVNLLSTGAVSPNRSQPKNAGFGMATGYQAPRTVQAQIRFSF
Ga0207683_111404362	3300026121	Miscanthus Rhizosphere	MVMSSPNDPVTNAAPVFDPVTGQLNDGVNLLPNGSVSPDRSKPKNAGFGVATNYQNPRNIQLQVRFSF
Ga0207698_104353832	3300026142	Corn Rhizosphere	LFNAPNQAIITGRNTTLALSTPADPVTNVAPVFDPITGLLNNGVNLTSTGAVSPDRSKPKNAGFGVANAYQAPRNIQVQVRFSF
Ga0209468_10317951	3300026306	Soil	SSPSDPVTNVAPVFDPVTGKLNDGVNLTSTGALSADRSKPKNAGFGVANAYQAPRNIQIQVRFSF
Ga0209814_103159533	3300027873	Populus Rhizosphere	RNTTLVLSNPNDPVTNVAPVFDPVTGLLNNGVNLTSTGAVSPDRSKPKNAGFGVATAYQTPRNVQLQVRFSF
Ga0209481_105012671	3300027880	Populus Rhizosphere	LFNAPNAAAITNRNTTLVLSNPNDPVTNVAPVFDPVTGLLNNGVNLTSTGAVSPDRSKPKNAGFGVATAYQTPRNVQLQVRFSF
Ga0209486_106564062	3300027886	Agricultural Soil	IARNIRLPGNRTIQIRADMFNAFNRAGITGRNTTLVLSSPQDPLTNVQPAFDPITGLLNDGVNLTSTGALSPNRSQPKNAAFGVANAYQAPRSVQLQIRFTF
Ga0207428_100914602	3300027907	Populus Rhizosphere	KNLQLRADLFNAPNAAAITNRNTTLMLSNPNDPVTNAAPVFDPVTGLLNNGVNLTSTGAVSPDRSKPKNAGFGVATAYQTPRNVQLQVRFSF
Ga0268266_120715572	3300028379	Switchgrass Rhizosphere	NAFNRAGITGRNTTLQLNTPADALTNVQPAFDPVTGLLNDGVNLTSTGAVSANRSQPKNAGFGVANAFQAPRSIQLQIRFAF
Ga0268264_109112762	3300028381	Switchgrass Rhizosphere	LATPTDPVTNTAPVFDPTTGKLNDGINLLSTGAVSPNRSLPKNAGFGVANNYQAPRSIQVQVRFSF
Ga0307408_1021470402	3300031548	Rhizosphere	MFNAFNRAGITGRNSTLQLSTPQDPLTQLQPAFDPVTGLLNDGVNLTSTGAVSPNRSQPKNAAFGVANAYQAPRSIQLQIRFTF
Ga0310886_105055151	3300031562	Soil	GSRSIQLRVDMFNALNRAGITGRNTTLQLTNPNDPITNNAPVIDPITGLLNDGVNLTSTGAVSTDRSKPKNAGFGVANAYQAPRNVQFQVRFSF
Ga0310813_113089092	3300031716	Soil	TTLQLASPNAPIINVAPVFDPTTGLLNDGKNLLSTGAKSTDRSLPKNAGFGVANGYQAPRSVQFQARFSF
Ga0310813_114882721	3300031716	Soil	ARNIRLGNRRNLQLRADLFNATNRAGVTGRNTTLALSNPNDPITNVSPAFDPITGLLNNGVNLTSTGAVSPDRSKPKNAGFGVANAYQAPRNVQIQVRFSF
Ga0307413_105856962	3300031824	Rhizosphere	FNAFNRAGITGRNTTLQLNTPADAVTNVQPAFDPVTGLLNNGVNLTSTGAVSPNRSQPKNAGFGVANAFQTPRSIQLQIRFTF
Ga0310904_104116671	3300031854	Soil	AQTLDLSIARNIRLGGGRSIQLRVDMFNAVNRAGITGRNTTLQLTNPSDPITNNAPVFDPITGLLNDGVNLTSTGAVSTDRSKPKNAGFGVANAYQAPRNVQFQVRFSF
Ga0310884_106768831	3300031944	Soil	ARNIRLGGGRSIQLRVDMFNAVNRAGITGRNTTLQLTNPSDPITNNAPVFDPITGLLNDGVNLTSTGAVSTDRSKPKNAGFGVANAYQAPRNVQFQVRFSF
Ga0310899_105041162	3300032017	Soil	RLGGGRSIQLRVDMFNAVNRAGITGRNTTLQLTNPSDPITNNAPVFDPITGLLNDGVNLTSTGAVSTDRSKPKNAGFGVANAYQAPRNVQFQVRFSF
Ga0307415_1020311901	3300032126	Rhizosphere	TTLQLNTPADAVTNVQPAFDPVTGLLNNGVNLTSTGAVSPNRSQPKNAGFGVANAFQTPRSIQLQIRFTF

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F079901

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences