Metagenome / Metatranscriptome Family F079894

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F079894
Family Type	Metagenome / Metatranscriptome
Number of Sequences	115
Average Sequence Length	74 residues
Representative Sequence	MKRTLLAVALAAAAATAFAAGEPANDQYRNNAGEPDRHQPQVGAIDSSYMVASADQYRPNAGESTDNNVVQNQVG
Number of Associated Samples	96
Number of Associated Scaffolds	115

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	72.17 %
% of genes near scaffold ends (potentially truncated)	29.57 %
% of genes from short scaffolds (< 2000 bps)	80.87 %
Associated GOLD sequencing projects	87
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (92.174 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (36.522 % of family members)
Environment Ontology (ENVO)	Unclassified (47.826 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (56.522 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 30.67% β-sheet: 0.00% Coil/Unstructured: 69.33%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 115 Family Scaffolds
PF00440	TetR_N	13.91
PF13185	GAF_2	11.30
PF08447	PAS_3	7.83
PF13188	PAS_8	2.61
PF00072	Response_reg	1.74
PF05494	MlaC	1.74
PF02518	HATPase_c	1.74
PF01169	UPF0016	0.87
PF11142	DUF2917	0.87
PF02233	PNTB	0.87
PF13426	PAS_9	0.87
PF06325	PrmA	0.87
PF02622	DUF179	0.87
PF00196	GerE	0.87
PF02678	Pirin	0.87
PF00106	adh_short	0.87
PF03401	TctC	0.87

COG ID	Name	Functional Category	% Frequency in 115 Family Scaffolds
COG2854	Periplasmic subunit MlaC of the ABC-type intermembrane phospholipid transporter Mla	Cell wall/membrane/envelope biogenesis [M]	1.74
COG1282	NAD/NADP transhydrogenase beta subunit	Energy production and conversion [C]	0.87
COG1678	Putative transcriptional regulator, AlgH/UPF0301 family	Transcription [K]	0.87
COG1741	Redox-sensitive bicupin YhaK, pirin superfamily	General function prediction only [R]	0.87
COG2119	Putative Ca2+/H+ antiporter, TMEM165/GDT1 family	General function prediction only [R]	0.87
COG2264	Ribosomal protein L11 methylase PrmA	Translation, ribosomal structure and biogenesis [J]	0.87
COG2890	Methylase of polypeptide chain release factors	Translation, ribosomal structure and biogenesis [J]	0.87
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	0.87
COG3897	Protein N-terminal and lysine N-methylase, NNT1/EFM7 family	Posttranslational modification, protein turnover, chaperones [O]	0.87

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	92.17 %
Unclassified	root	N/A	7.83 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	92.17 %
Unclassified	root	N/A	7.83 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	92.17 %
Unclassified	root	N/A	7.83 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	73.04 %
Unclassified	root	N/A	7.83 %

Name	Rank	Taxonomy	Distribution
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	66.09 %
Unclassified	root	N/A	7.83 %

Name	Rank	Taxonomy	Distribution
unclassified Betaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria	63.48 %
Unclassified	root	N/A	7.83 %

Name	Rank	Taxonomy	Distribution
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	63.48 %
Unclassified	root	N/A	7.83 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001661\|JGI12053J15887_10039218	All Organisms → cellular organisms → Bacteria → Proteobacteria	2661	Open in IMG/M
3300001867\|JGI12627J18819_10134970	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1009	Open in IMG/M
3300002558\|JGI25385J37094_10002808	All Organisms → cellular organisms → Bacteria → Proteobacteria	5877	Open in IMG/M
3300002560\|JGI25383J37093_10010212	All Organisms → cellular organisms → Bacteria	3070	Open in IMG/M
3300002562\|JGI25382J37095_10036967	All Organisms → cellular organisms → Bacteria	1912	Open in IMG/M
3300002916\|JGI25389J43894_1059438	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	648	Open in IMG/M
3300002917\|JGI25616J43925_10172242	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	853	Open in IMG/M
3300005167\|Ga0066672_10083864	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1913	Open in IMG/M
3300005174\|Ga0066680_10096019	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1808	Open in IMG/M
3300005174\|Ga0066680_10277887	Not Available	1067	Open in IMG/M
3300005177\|Ga0066690_10762131	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	633	Open in IMG/M
3300005177\|Ga0066690_10899003	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	566	Open in IMG/M
3300005178\|Ga0066688_10743907	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	618	Open in IMG/M
3300005439\|Ga0070711_100080833	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	2315	Open in IMG/M
3300005446\|Ga0066686_10129255	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1654	Open in IMG/M
3300005446\|Ga0066686_10220624	All Organisms → cellular organisms → Bacteria	1274	Open in IMG/M
3300005446\|Ga0066686_10744629	All Organisms → cellular organisms → Bacteria	657	Open in IMG/M
3300005447\|Ga0066689_10071818	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1920	Open in IMG/M
3300005467\|Ga0070706_100770138	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	891	Open in IMG/M
3300005537\|Ga0070730_10787390	Not Available	600	Open in IMG/M
3300005540\|Ga0066697_10048108	All Organisms → cellular organisms → Bacteria	2411	Open in IMG/M
3300005547\|Ga0070693_100122561	All Organisms → cellular organisms → Bacteria → Proteobacteria	1614	Open in IMG/M
3300005559\|Ga0066700_10593540	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	772	Open in IMG/M
3300005560\|Ga0066670_10116352	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1520	Open in IMG/M
3300005575\|Ga0066702_10865059	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	539	Open in IMG/M
3300005576\|Ga0066708_10262111	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1101	Open in IMG/M
3300005586\|Ga0066691_10327727	All Organisms → cellular organisms → Bacteria → Proteobacteria	905	Open in IMG/M
3300006034\|Ga0066656_10886333	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	571	Open in IMG/M
3300006791\|Ga0066653_10242074	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	919	Open in IMG/M
3300006794\|Ga0066658_10020983	All Organisms → cellular organisms → Bacteria	2551	Open in IMG/M
3300006797\|Ga0066659_10234844	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1363	Open in IMG/M
3300006797\|Ga0066659_11328646	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	600	Open in IMG/M
3300007255\|Ga0099791_10110060	All Organisms → cellular organisms → Bacteria	1273	Open in IMG/M
3300007258\|Ga0099793_10063775	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1652	Open in IMG/M
3300007258\|Ga0099793_10108326	All Organisms → cellular organisms → Bacteria	1290	Open in IMG/M
3300009012\|Ga0066710_100466985	All Organisms → cellular organisms → Bacteria	1895	Open in IMG/M
3300009012\|Ga0066710_103326407	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	613	Open in IMG/M
3300009038\|Ga0099829_10597211	All Organisms → cellular organisms → Bacteria	918	Open in IMG/M
3300009089\|Ga0099828_11188739	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	676	Open in IMG/M
3300009090\|Ga0099827_10974313	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	735	Open in IMG/M
3300009090\|Ga0099827_11170307	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	668	Open in IMG/M
3300009090\|Ga0099827_11924507	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	515	Open in IMG/M
3300010087\|Ga0127492_1065229	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1005	Open in IMG/M
3300010089\|Ga0127454_1053806	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	687	Open in IMG/M
3300010099\|Ga0127450_1007956	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	635	Open in IMG/M
3300010126\|Ga0127482_1076246	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	655	Open in IMG/M
3300010128\|Ga0127486_1158630	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	659	Open in IMG/M
3300010141\|Ga0127499_1012243	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	694	Open in IMG/M
3300010145\|Ga0126321_1194768	Not Available	549	Open in IMG/M
3300010325\|Ga0134064_10000519	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	7425	Open in IMG/M
3300010329\|Ga0134111_10179366	All Organisms → cellular organisms → Bacteria	849	Open in IMG/M
3300011269\|Ga0137392_10021991	All Organisms → cellular organisms → Bacteria	4494	Open in IMG/M
3300011270\|Ga0137391_10036066	All Organisms → cellular organisms → Bacteria	4174	Open in IMG/M
3300011271\|Ga0137393_10239279	All Organisms → cellular organisms → Bacteria	1539	Open in IMG/M
3300012203\|Ga0137399_11308492	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	609	Open in IMG/M
3300012203\|Ga0137399_11554871	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	549	Open in IMG/M
3300012205\|Ga0137362_11228154	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	634	Open in IMG/M
3300012212\|Ga0150985_106242837	Not Available	513	Open in IMG/M
3300012212\|Ga0150985_120215910	Not Available	506	Open in IMG/M
3300012285\|Ga0137370_10112182	All Organisms → cellular organisms → Bacteria	1546	Open in IMG/M
3300012285\|Ga0137370_10841169	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	569	Open in IMG/M
3300012351\|Ga0137386_10541598	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	838	Open in IMG/M
3300012361\|Ga0137360_10227458	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1522	Open in IMG/M
3300012362\|Ga0137361_10863996	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	821	Open in IMG/M
3300012363\|Ga0137390_10650645	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1019	Open in IMG/M
3300012582\|Ga0137358_10102892	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1935	Open in IMG/M
3300012582\|Ga0137358_10127621	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1729	Open in IMG/M
3300012685\|Ga0137397_10183822	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1553	Open in IMG/M
3300012918\|Ga0137396_10569427	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	839	Open in IMG/M
3300012918\|Ga0137396_10938142	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	632	Open in IMG/M
3300012922\|Ga0137394_10240421	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1548	Open in IMG/M
3300012922\|Ga0137394_11495666	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	534	Open in IMG/M
3300012923\|Ga0137359_11338570	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	604	Open in IMG/M
3300012925\|Ga0137419_10078179	All Organisms → cellular organisms → Bacteria	2228	Open in IMG/M
3300012925\|Ga0137419_10510307	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	955	Open in IMG/M
3300012929\|Ga0137404_10763213	All Organisms → cellular organisms → Bacteria	877	Open in IMG/M
3300012944\|Ga0137410_11859728	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	533	Open in IMG/M
3300015054\|Ga0137420_1469046	Not Available	4889	Open in IMG/M
3300015241\|Ga0137418_10023648	All Organisms → cellular organisms → Bacteria → Proteobacteria	5684	Open in IMG/M
3300017654\|Ga0134069_1060321	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1203	Open in IMG/M
3300017656\|Ga0134112_10049809	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1515	Open in IMG/M
3300018027\|Ga0184605_10460284	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	559	Open in IMG/M
3300018431\|Ga0066655_10776869	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	651	Open in IMG/M
3300018431\|Ga0066655_11284233	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	524	Open in IMG/M
3300018433\|Ga0066667_12151264	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	518	Open in IMG/M
3300018468\|Ga0066662_10525187	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1086	Open in IMG/M
3300018482\|Ga0066669_10366149	Not Available	1205	Open in IMG/M
3300020170\|Ga0179594_10077798	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1165	Open in IMG/M
3300021307\|Ga0179585_1008768	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	686	Open in IMG/M
3300024330\|Ga0137417_1172550	All Organisms → cellular organisms → Bacteria → Proteobacteria	4037	Open in IMG/M
3300024330\|Ga0137417_1412997	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	4249	Open in IMG/M
3300025905\|Ga0207685_10433364	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	680	Open in IMG/M
3300026297\|Ga0209237_1087505	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1406	Open in IMG/M
3300026298\|Ga0209236_1035209	All Organisms → cellular organisms → Bacteria	2633	Open in IMG/M
3300026309\|Ga0209055_1098526	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1173	Open in IMG/M
3300026317\|Ga0209154_1226904	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	691	Open in IMG/M
3300026318\|Ga0209471_1019902	All Organisms → cellular organisms → Bacteria	3397	Open in IMG/M
3300026323\|Ga0209472_1000826	All Organisms → cellular organisms → Bacteria → Proteobacteria	18142	Open in IMG/M
3300026326\|Ga0209801_1021169	All Organisms → cellular organisms → Bacteria	3186	Open in IMG/M
3300026328\|Ga0209802_1065843	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1728	Open in IMG/M
3300026328\|Ga0209802_1162237	Not Available	927	Open in IMG/M
3300026335\|Ga0209804_1036094	All Organisms → cellular organisms → Bacteria	2481	Open in IMG/M
3300026343\|Ga0209159_1046281	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	2176	Open in IMG/M
3300026530\|Ga0209807_1000047	All Organisms → cellular organisms → Bacteria → Proteobacteria	50141	Open in IMG/M
3300027034\|Ga0209730_1010046	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	912	Open in IMG/M
3300027266\|Ga0209215_1010808	Not Available	1114	Open in IMG/M
3300027616\|Ga0209106_1022126	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1386	Open in IMG/M
3300027633\|Ga0208988_1031815	All Organisms → cellular organisms → Bacteria	1359	Open in IMG/M
3300027655\|Ga0209388_1126326	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	728	Open in IMG/M
3300027663\|Ga0208990_1049626	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1264	Open in IMG/M
3300027669\|Ga0208981_1110108	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	703	Open in IMG/M
3300027862\|Ga0209701_10145806	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1448	Open in IMG/M
3300027882\|Ga0209590_10445728	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	837	Open in IMG/M
3300028536\|Ga0137415_10560311	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	952	Open in IMG/M
3300030997\|Ga0073997_10021069	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	2331	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	98.26%
Host-Associated	Host-Associated	1.74%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	96.52%
Aquatic	Environmental → Aquatic	1.74%
Plants	Host-Associated → Plants	1.74%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	96.52%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.74%
Freshwater	Environmental → Aquatic → Freshwater	0.87%
Sediment	Environmental → Aquatic → Sediment	0.87%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	86.09%
Loam	Environmental → Terrestrial → Soil → Loam	10.43%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.74%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.87%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.87%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	46.09%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	39.13%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	6.96%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.48%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.74%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.87%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.87%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.87%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	36.52%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	26.96%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	12.17%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	8.70%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	6.96%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.48%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	1.74%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.87%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.87%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.87%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.87%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001661	Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)	Environmental	Open in IMG/M
3300001867	Texas A ecozone_OM1H0_M2 (Combined assembly for Texas A ecozone Site metagenome samples, ASSEMBLY_DATE=20130705)	Environmental	Open in IMG/M
3300002558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm	Environmental	Open in IMG/M
3300002560	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm	Environmental	Open in IMG/M
3300002562	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cm	Environmental	Open in IMG/M
3300002916	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_20cm	Environmental	Open in IMG/M
3300002917	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_100cm	Environmental	Open in IMG/M
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental	Open in IMG/M
3300005174	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129	Environmental	Open in IMG/M
3300005177	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139	Environmental	Open in IMG/M
3300005178	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005446	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135	Environmental	Open in IMG/M
3300005447	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005537	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1	Environmental	Open in IMG/M
3300005540	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146	Environmental	Open in IMG/M
3300005547	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG	Environmental	Open in IMG/M
3300005559	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149	Environmental	Open in IMG/M
3300005560	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_119	Environmental	Open in IMG/M
3300005575	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151	Environmental	Open in IMG/M
3300005576	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157	Environmental	Open in IMG/M
3300005586	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140	Environmental	Open in IMG/M
3300006034	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105	Environmental	Open in IMG/M
3300006791	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102	Environmental	Open in IMG/M
3300006794	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300010087	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_40_5_0_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010089	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_40_5_8_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010099	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_40_2_16_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010126	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_40_2_0_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010128	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_40_2_24_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010141	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_40_5_8_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010145	Soil microbial communities from Hawaii, USA to study soil gas exchange rates - KP-HI-INT metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010325	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_2_0_1 metaG	Environmental	Open in IMG/M
3300010329	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_11112015	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012285	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaG	Environmental	Open in IMG/M
3300012351	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300015054	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300015241	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300017654	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300017656	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_11112015	Environmental	Open in IMG/M
3300018027	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_coex	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300020170	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300021307	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_06_16RNAfungal (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300024330	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300025905	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026297	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_40cm (SPAdes)	Environmental	Open in IMG/M
3300026298	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm (SPAdes)	Environmental	Open in IMG/M
3300026309	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110 (SPAdes)	Environmental	Open in IMG/M
3300026317	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121 (SPAdes)	Environmental	Open in IMG/M
3300026318	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128 (SPAdes)	Environmental	Open in IMG/M
3300026323	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130 (SPAdes)	Environmental	Open in IMG/M
3300026326	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127 (SPAdes)	Environmental	Open in IMG/M
3300026328	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129 (SPAdes)	Environmental	Open in IMG/M
3300026335	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139 (SPAdes)	Environmental	Open in IMG/M
3300026343	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144 (SPAdes)	Environmental	Open in IMG/M
3300026530	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154 (SPAdes)	Environmental	Open in IMG/M
3300027034	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_RefH0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027266	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM2H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027616	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM1_M3 (SPAdes)	Environmental	Open in IMG/M
3300027633	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_M1 (SPAdes)	Environmental	Open in IMG/M
3300027655	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1 (SPAdes)	Environmental	Open in IMG/M
3300027663	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_M3 (SPAdes)	Environmental	Open in IMG/M
3300027669	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM1_M1 (SPAdes)	Environmental	Open in IMG/M
3300027862	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300030997	Metatranscriptome of forest soil microbial communities from Montana, USA - Site 5 -Soil GP-3B (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12053J15887_100392184	3300001661	Forest Soil	MKRILLAVALAAAAATAFAAREPTNDYYRNNAGEPDRHQPQVGAIDSSYMVASADQYRPNAGESTGNNVVQNQVG*
JGI12627J18819_101349702	3300001867	Forest Soil	MKRTLLAVALAAAAATAFAAGEPTNDQYRNNAGEPDRHQTQLGAIDSSYMVASADKYRPNAGESTDNNVVQNQVG*
JGI25385J37094_100028083	3300002558	Grasslands Soil	MKRTLLAVALAAAAATVFAAGEPANDQYRNNAGEPDRHQPQVGALDSSYMVASADQYRPNAGESTDNNVVQNQVG*
JGI25383J37093_100102123	3300002560	Grasslands Soil	MKRTLLAVALAAAAATVFAAGEPANDQYRNNAGEPDRHQPQVGAXDSSYMVASADQYRPNAGESTDNNVVQNQVG*
JGI25382J37095_100369671	3300002562	Grasslands Soil	VMKRTLLAVALAAAAATVFAAGEPANDQYRNNAGEPDRHQPQVGAIDSSYMVASADQYRPNAGESTDNNVVQNQVG*
JGI25389J43894_10594381	3300002916	Grasslands Soil	TLLAVALAAAAATVFAAGEPANDQYRNNAGEPDRHQPQVGAIDSSYMVASADQYRPNAGESTDNNVVQNQVG*
JGI25616J43925_101722421	3300002917	Grasslands Soil	MKRTILAIALAAAAASVFAAGEPANDQYRNNAGEQDRHQPQVGAIDSSYMVASADPYRPNAGESTDNNVVQNQVG*
Ga0066672_100838643	3300005167	Soil	MKRTLLAVALAAAAATVFAAGEPANDQYRNNAGEPDQHQPQLGAIGSSYMVASADPYRPNAGESTDNNVVQNQVG*
Ga0066680_100960192	3300005174	Soil	MKRTLLAVALAAAAATVFAAGEPTNDQYRNNAGEPDRHQPQVGAIDSSYMVASADEYRPNAGESTDNNVVQNQVG*
Ga0066680_102778871	3300005174	Soil	MKRTIIAAALAAAVAISFVARADTDDYRYNAGERDPHQPQVGEAGSSYRVASADPYRPGAGESTENNVVQNQVG*
Ga0066690_107621312	3300005177	Soil	VKRTLLAVALAAAAATAFAAGEPANDQYRNNAGEPDQHQPQLGAIGSSYMVASADPYRPNAGESTDNNVVQNQVG*
Ga0066690_108990032	3300005177	Soil	MIMKRTLLAVALAAAAATAFAAGEPANNQYRNNAGEPDQHQPQVGAIDSSYMVASADPYRPN
Ga0066688_107439072	3300005178	Soil	LLAVALAAAAATVFAAGEPANDQYRNNAGEPDRHQPQVGAIDSSYMVASADQYRPNAGESTDNNVVQNQVG*
Ga0070711_1000808331	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MKRTLLAVALAASAAAAFAASEPTNNQYRNNAGQEDRQQQQVGAISGSTLVAGAYRSNAGDSTSDNVVQTQVG*
Ga0066686_101292556	3300005446	Soil	MKRTLLAVALAAAAATAFAAGEPANDQYRNNAGEPDRHQPQVGAIDSSYMVASADQYRPNAGESTDNNVVQNQVG*
Ga0066686_102206241	3300005446	Soil	MKRTLLAVALAAAAAAVFAAGEPANDQYRNNAGEPDRHQPQVGALDSSYMVASADQYRPNAGESTDNNVVQNQVG*
Ga0066686_107446291	3300005446	Soil	NHSIKGITIMKRILSAALFVAFASSAFAASAPVNDPYRNDAGQPDQHQPQVASADPYRPNAGESTDNNVVQSQVG*
Ga0066689_100718182	3300005447	Soil	MKRTLLAVALAAAAATVFAAGEPANDQYRNNAGEPDRHQPQVGAIDSSYMVASADQYRPNAGESTDNNVVQNQVG*
Ga0070706_1007701381	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MKRTLLAVALAAVAAAAFAAGEPTNDQYRNNAGEQDRHQPQLGAIDSSYMVASADEYRPNAGESTDNNVVQNQVG*
Ga0070730_107873903	3300005537	Surface Soil	EYERKHAMKRTLLAVALAASAAAAFAASEPTNNQYRNNAGQEDKQEQQVGAISGSTLVASAYRSNAGDSTSDNVVQTQVG*
Ga0066697_100481081	3300005540	Soil	AATVFAAGEPANDQYRNNAGEPDRHQPQVGALDSSYMVASADQYRPNAGESTDNNVVQNQVG*
Ga0070693_1001225611	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	MKRTLLAIALAASAAAAFAANEPSNDQYRNNAGEQDKQQQQVGAIGSSTLVASAYRSNAGESSTDNVVQTQLG*
Ga0066700_105935402	3300005559	Soil	MKRTLLAVALAAAAAAVFAAGEPANDQYRNNAGEPDRHQPQVGAIDSSYMVASADQYRPNAGESTDNNVVQNQVG*
Ga0066670_101163521	3300005560	Soil	MKRTHLAVALAAAAATAFAAGEPANDQYRNNAGEPDRHQPQVGAIDSSYMVASADQYRPNAGESTDNNVVQNQVG*
Ga0066702_108650591	3300005575	Soil	LAAAAAISFAASADTDGYRYNAGERDPHQPQVGDAGSSYRVASADPYRPGGGESTENNVVQVQVG*
Ga0066708_102621111	3300005576	Soil	MKRTLLAVALAAAAATAFAAGEPANDEYRNNAGEPDRHQPQLGAIDSSYMVASADQYRPNAGESTDNNVVQNQVG*
Ga0066691_103277271	3300005586	Soil	MKRTLLAIALAAAAATAFAAGEPANDQYRNNAGEPDRHQPQVGAIDSSYMVASADQYRPNAGEPTDNNVVQNQVG*
Ga0066656_108863332	3300006034	Soil	TVMKRTLLAVALAAAAATVFAAGEPANDQYRNNAGEPDRHQPQVGAIDSSYMVASADQYRPNAGESTDNNVVQNQVG*
Ga0066653_102420744	3300006791	Soil	MKRTLLAVALAAAAATVFAAGEPANDQYRNNAGEPDRHQPQVGAIDSSYMVASADQYRPNAGES
Ga0066658_100209833	3300006794	Soil	MKRTLLAVALAAATATAFAAGEPTNDQYRNNAGEPDQHQPQVGAIDSSYMVASADPYRPNAGESTDNNVVQNQVG*
Ga0066659_102348441	3300006797	Soil	VKRTLLAVALAAAAATAFAAGEPANDQYRNNAGEPDQHQPQLGAIGSSYMVASADPYRPNAGE
Ga0066659_113286461	3300006797	Soil	MKRTLLAVALAAAAATAFAAGEPANDQYRNNAGEPDQHQPQVGAIDSSYMVASADPYRPNAGESTDNNVVQNQVG*
Ga0099791_101100602	3300007255	Vadose Zone Soil	MKRTLLAIALAAAAATAFAAGEPTNDQYRNNAGEPDRHQPQVGAIDSSFTVASADEYRPNAGESTDNNVVQNQVG*
Ga0099793_100637752	3300007258	Vadose Zone Soil	MKRTILAIALAAAAATAFAAGEPTNDQYRNNAGEPDRHQPQVGAIDSSYTVASADEYRPNAGESTDNNVVQNQVG*
Ga0099793_101083262	3300007258	Vadose Zone Soil	MKRTLLAVALAAVAATAFAAGEPANDQYRNNAGEPDRHQPQVGAIDSSYMVASADQYRPNAGESTDNNVVQNQVG*
Ga0066710_1004669853	3300009012	Grasslands Soil	MKRILSAALFVAFASSAFAASAPVNDPYRNDAGQPDQHQPQVASADPYRPNAGESTDNNVVQSQVG
Ga0066710_1033264071	3300009012	Grasslands Soil	RTLLAVALAAAAATAFAAGEPANDQYRNNAGEPDRHQPQLGAIDSSYMVASADQYRPNAGESTDNNVVQNQVG
Ga0099829_105972112	3300009038	Vadose Zone Soil	LAIALAAAAATAFAAGEPTNDQYRNNAGEQDRHQPQVGAIDSSYMVASADQYRPNAGESTDNNVVQNQVG*
Ga0099828_111887392	3300009089	Vadose Zone Soil	MKRTLLAIALAAAAATAFAAGEPANDQYRNNAGEPDRHQPQVGAIDSSYMVASADQYRPNAGESTDNNVVQNQVG*
Ga0099827_109743132	3300009090	Vadose Zone Soil	MKRTLLAVALAAAAATVFAAGEPANDQYRNNAGEPDRHQPQVGAIDSSYMVASADEYRPNAGESTDNNVVQNQVG*
Ga0099827_111703071	3300009090	Vadose Zone Soil	MKRTLLAIALAAAAATAFAAGEPTNDQYRNNAGEPDRHQPQVGAIDSSYTVASADEYRPNAGESTDNNVVQNQVG*
Ga0099827_119245071	3300009090	Vadose Zone Soil	MKRTLLAIALAAAAATAFAAGEPANDQYRNNAGEQDQHQPQVGAIDSSYMVASADQYRPNAGESTDNNVVQNQVG*
Ga0127492_10652291	3300010087	Grasslands Soil	RTLLAVALAAAAATAFAAGEPANDQYRNNAGEPDRHQPQVGAIDSSYMVASADQYRPNAGESTDNNVVQNQVG*
Ga0127454_10538062	3300010089	Grasslands Soil	NTVMKRTLLAVALAAAAATVFAAGEPANDQYRNNAGEPDRHQPQVGAIDSSYMVASADQYRPNAGESTDNNVVQNQVG*
Ga0127450_10079561	3300010099	Grasslands Soil	NTVMKRTLLAVALAAAAATAFAAGEPANDQYRNNAGEPDRHQPQVGAIDSSYMVASADQYRPNAGESTDNNVVQNQVG*
Ga0127482_10762461	3300010126	Grasslands Soil	ITVMKRTLLAVALAAAAATVFAAGEPANDQYRNNAGEPDRHQPQVGAIDSSYMVASADQYRPNAGESTDNNVVQNQVG*
Ga0127486_11586301	3300010128	Grasslands Soil	MKRIILAALLAAVAANSFAAAFPNDQYRNTAGEVDQHQPQVGALDSSYMVASADQYRPNAGESTDNNVVQNQVG*
Ga0127499_10122433	3300010141	Grasslands Soil	MKRTLLAVALAAAAATAFAAGEPANDQYRNNAGEPDRHQPQLGAIDSSYMVASADQYRPNAGESTDNNVVQNQVG*
Ga0126321_11947681	3300010145	Soil	MKRITLALAFALVAGAAFAANDQYRNNAGDQDQHQPQVGDAGSSYRVASADPYRPNAGESTDNNVVQYQVG*
Ga0134064_100005193	3300010325	Grasslands Soil	MKRTLLAVALAAAAATAFAAGEPTNDQYRNNAGEPDRHQPQVGAIDSSYMVASADQYRPNAGESTDNNVVQNQVG*
Ga0134111_101793661	3300010329	Grasslands Soil	RNTVMKRTLLAVALAAAAATVFAAGEPANDQYRNNAGEPDRHQPQVGAIDSSYMVASADQYRPNAGESTDNNVVQNQVG*
Ga0137392_100219914	3300011269	Vadose Zone Soil	MKRTLLAIALAAAAATAFAAGEPTNDQYRNNAGEQDRHQPQVGAIDSSYMVASADQYRPNAGESTDNNVVQNQVG*
Ga0137391_100360663	3300011270	Vadose Zone Soil	MKRTLLAIALAAAAATAFAAGEPANDQYRNNAGEQDRHQPQVGAIDSSYMVASADPYRPNAGESTDNNVVQNQVG*
Ga0137393_102392792	3300011271	Vadose Zone Soil	MKRTLLAIALAAAAATAFAAGEPANDQYRNNAGEQDWHQPQLGAIDSSYMVASADQYRPNAGESTDNNVVQNQVG*
Ga0137399_113084922	3300012203	Vadose Zone Soil	MKRTLLAVALAAVAATAFAAGEPANDQYRNNAGEPDRHQPQVGAIDSSYMVASADEYRPNAGESTDNNVVQNQVG*
Ga0137399_115548712	3300012203	Vadose Zone Soil	LAIALAAAAATAFAAGEPANDQYRNNAGEPDRHQPQVGAIDSSYMVASADQYRPNAGESTDNNVVQNQVG*
Ga0137362_112281541	3300012205	Vadose Zone Soil	MKRTLLAIALAAVAAAAFAAGEPTNDQYRNNAGEPDRHQPQVGAIDSSYMVASADEYRPNAGESTDNNVVQNQVG*
Ga0150985_1062428371	3300012212	Avena Fatua Rhizosphere	RTFIEHERKYAMKRTLLAIALAAGAATAFAATEAGNDQYRNGAGQPDQHQPVLGAISGSTLVASAYRSNAGDSTTDNVVQTQLG*
Ga0150985_1202159101	3300012212	Avena Fatua Rhizosphere	MKRTLLAVALAAAAATAFAANEAGNDQYRNGAGQQDQHQPVLGAISGSTLVANAYRSNAGDATTDNVVQTQVG*
Ga0137370_101121821	3300012285	Vadose Zone Soil	LAAAAATAFAAGEPANDQYRNNAGEPDQHQPQVGAIGSSYMVASADPYRPNAGESTDNNVVQNQVG*
Ga0137370_108411691	3300012285	Vadose Zone Soil	MKRTLLAVALAAAAATAFAAGEPTNDQYRNNAGEPDQHQPQLGAIDSSYMVASADQYRPNAGESTDNNVVQNQVG*
Ga0137386_105415981	3300012351	Vadose Zone Soil	MKRTLLAVALAAAAATVFAAGEPANDQYRNKAGEPDRHQPQVGAIDSSYMVASADQYRPNAGESTDNNVVQNQVG*
Ga0137360_102274581	3300012361	Vadose Zone Soil	MKRTLLAIALAAAAATAFAAGEPTNDQYRNNAGEPDRHQPQVGAIDSSYMVASADEYRPNAGESTDNNVVQNQVG*
Ga0137361_108639961	3300012362	Vadose Zone Soil	MKRTLLAIALAAVAAAAFAAGEPTNDQYRNNAGEPDRHQPQVGAIDSSYMVASADQYRPNAGESTNNNVVQNQVG*
Ga0137390_106506451	3300012363	Vadose Zone Soil	MKRTLLAIALAAAAATAFAAGEPTNDQYRNNAGEPDRHQPQVGAIDSSYTVASADEYRPNAG
Ga0137358_101028922	3300012582	Vadose Zone Soil	MKRTLLAIALAAAAATAFAAGEPTNDQYRNNAGEPDRHQPQVGAIDSSYTVASTDEYRPNAGESTDNNVVQNQVG*
Ga0137358_101276212	3300012582	Vadose Zone Soil	MKRILLAVALAAAAATAFAAREPTNDYYRNNAGEPDRHQPQVGAIDSSYMVASADQYRPNAGESTNNNVVQNQVG*
Ga0137397_101838223	3300012685	Vadose Zone Soil	MKRTLLAIALAAAAATAFAASEPANDQYRNNAGEQDRHQPQLGAIDSSYLVASADAYRPNAGESTDNNVVQNQVG*
Ga0137396_105694271	3300012918	Vadose Zone Soil	MKRTLLAIALAAAAATAFAAGEPANDQYRNNAGEQDRHQPQVGAIDSSYLVASADQYRPNAGESTDNNVVQNQVG*
Ga0137396_109381421	3300012918	Vadose Zone Soil	MKRTLLAIALAAAAATAFAAGEPANDQYRNNAGEPDRHQPQVGAIDSTYMVASADQYRPNAGESTDNNVVQNQVG*
Ga0137394_102404212	3300012922	Vadose Zone Soil	MKRTILAIALAAAAATAFAAGEPANDQYRNNAGEPDRHQPQVGAIDSSYLVASADQYRPNAGESTDNNVVQNQVG*
Ga0137394_114956662	3300012922	Vadose Zone Soil	MKRTILAIALAAAAATAFAAGEPSNDQYRNNAGEPDRHQPQVGAIDSSYTVASADEYRPNAGES
Ga0137359_113385701	3300012923	Vadose Zone Soil	MKRTILAIALAAAAATAFAAGEPTNDQYRNNAGEPDRHQPQVGAIDSSYMVASADEYRPNAGESTDNNVVQNQVG*
Ga0137419_100781794	3300012925	Vadose Zone Soil	MKRTILAIALAAAAATAFAAGEPTNDQYRNNAGEPDRHQPQVGAIDSSYTVASADEYRPNAGESTNNNVVQNQVG*
Ga0137419_105103072	3300012925	Vadose Zone Soil	MKRTLLAVALAATAAVAFAAGEPTNDQYRNNAGEPDRHQPQVGAIDSSYMVASADEYRPNAGESTDNNVVQNQVG*
Ga0137404_107632132	3300012929	Vadose Zone Soil	AATAFAAGEPTNDQYRNNAGEPDRHQPQVGAIDSSYMVASADEYRPNAGESTDNNVVQNQVG*
Ga0137410_118597281	3300012944	Vadose Zone Soil	MKRTLLAIALAAAAATAFAASEPANDQYRNNAGEQDRHQPQLGAIDSSYLVASADAYRPNAGESTDNNVVQNQ
Ga0137420_14690467	3300015054	Vadose Zone Soil	LQQLWQPRAISFAASADTDDYRYNAGERDPHQPQVGDAAARTDGSADPYRPGAGESTENNVARNQLG*
Ga0137418_100236485	3300015241	Vadose Zone Soil	MKRTLLAIALAAAAATAFAAGEPANDQYRNNAGEQDRHQPQVGAIDSSYMVASADEYRPNAGESTDNNVVQNQVG*
Ga0134069_10603211	3300017654	Grasslands Soil	MKRTLLAVALAAAAATVFAAGEPANDQYRNNAGEPDRHQPQVGAIDSSYMVASADQYRPNAGESTDNNVVQNQVGYAPRF
Ga0134112_100498093	3300017656	Grasslands Soil	MKRTLLAVALAAAAATVFAAGEPANDQYRNNAGEPDRHQPQVGALDSSYMVASADQYRPNAGESTDNNVVQNQVG
Ga0184605_104602841	3300018027	Groundwater Sediment	MKRTILAIALAAAAATAFAAGEPTNDQYRNNAGEPDRHQPQVGAIDSSYTVASADEYRPNAGESTDNNVVQNQVG
Ga0066655_107768691	3300018431	Grasslands Soil	MKRTLLAVALAAAAATVFAAGEPANDQYRNNAGEPDRHQPQVGAIDSSYMVASADQYRPNAGESTDNNGVQNQVG
Ga0066655_112842331	3300018431	Grasslands Soil	MKRTLLAVSLAAAAATAFAAGEPANDQYRNNAGEPDRHQPQVGAIDSSYMVASADQYRPNAGESTDNNVVQNQVG
Ga0066667_121512641	3300018433	Grasslands Soil	RNTVMKRTLLAVALAAAAATVFAAGEPANDQYRNNAGEPDRHQPQVGAIDSSYMVASADQYRPNAGESTDNNVVQNQVG
Ga0066662_105251873	3300018468	Grasslands Soil	MKRTLLAVALAAAAATVFAAGEPANDQYRNNAGEPDRHQPQVGAIDSSYMVASADQYRPNAGESTDNNVVQNQVG
Ga0066669_103661494	3300018482	Grasslands Soil	MKRTLLAVALAAAAATAFAAGEPANDQYRNNAGEPDRHQPQVGAIDSSYMVASADQYRPNAGESTDNNVVQNQVG
Ga0179594_100777984	3300020170	Vadose Zone Soil	MKRILLAVALAAAAATAFAAREPTNDYYRNNAGEPDRHQPQVGAIDSSYMVASADQYRPNAGESTDNNVVQNQVG
Ga0179585_10087682	3300021307	Vadose Zone Soil	MKRTILAIALAAAAATAFAAGEPTNDQYRNNAGEPDRHQPQVGAIDSSYMVASADQYRPNAGESTDNNVVQNQVG
Ga0137417_11725505	3300024330	Vadose Zone Soil	MKRTLLAVALAAVAATAFAAGEPANDQYRNNAGEPDRHQPQVGAIDSSYMVASADQYRPNAGESTDNNVVQNQVG
Ga0137417_14129972	3300024330	Vadose Zone Soil	MKRTLLAVGPSQRPRRVAFAAGEPTNDQYRNNAGEPDRHQPQVGAIDSSYMVASADEYRPNAGESTDNNVVQNQVG
Ga0207685_104333642	3300025905	Corn, Switchgrass And Miscanthus Rhizosphere	MKRTLLAVALAAVAAAAFAAGEPTNDQYRNNAGEQDRHQPQLGAIDSSYMVASADEYRPNAGESTDNNVVQNQVG
Ga0209237_10875053	3300026297	Grasslands Soil	MKRTLLAVALAAAATAFAAGEPTNDQYRNNAGEPDRHQPQVGAINSSYMVASADQYRPNAGESTDNNVVQNQVG
Ga0209236_10352094	3300026298	Grasslands Soil	AVALAAAAAAVFAAGEPANDQYRNNAGEPDRHQPQVGALDSSYMVASADQYRPNAGESTDNNVVQNQVG
Ga0209055_10985261	3300026309	Soil	MKRTLLAVALAAAAATVFAAGEPANDQYRNNAGEPDRHQPQVGAIDSSYMVASADQYRPNAGESTDNNVVQ
Ga0209154_12269042	3300026317	Soil	MKRTLLAVALAAAAATAFAAGEPTNDQYRNNAGEPDQHQPQVGAIDSSYMVASADPYRPNAGESTDNNVVQNQVG
Ga0209471_10199024	3300026318	Soil	NIIVNRTLLAVALAAAAATAFAAGEPANNQYRNNAGEPDQHQPQLGAIGSSYMVASADPYRPNAGESTDNNVVQNQVG
Ga0209472_10008265	3300026323	Soil	MKRTLLAVALAAAAATAFAAGEPTNDQYRNNAGEPDRHQPQVGAIDSSYMVASADQYRPNAGESTDNNVVQNQVG
Ga0209801_10211693	3300026326	Soil	MKRTLLAVALAAAAAAVFAAGEPANDQYRNNAGEPDRHQPQVGALDSSYMVASADQYRPNAGESTDNNVVQNQVG
Ga0209802_10658432	3300026328	Soil	MKRTLLAVALAAAAATVFAAGEPTNDQYRNNAGEPDRHQPQVGAIDSSYMVASADEYRPNAGESTDNNVVQNQVG
Ga0209802_11622371	3300026328	Soil	MKRTIIAAALAAAVAISFVARADTDDYRYNAGERDPHQPQVGEAGSSYRVASADPYRPGAGESTENNVVQNQVG
Ga0209804_10360943	3300026335	Soil	VKRTLLAVALAAAAATAFAAGEPANDQYRNNAGEPDQHQPQLGAIGSSYMVASADPYRPNAGESTDNNVVQNQVG
Ga0209159_10462811	3300026343	Soil	VMKRTLLAVALAAAAATVFAAGEPANDQYRNNAGEPDRHQPQVGAIDSSYMVASADQYRPNAGESTDNNVVQNQVG
Ga0209807_100004724	3300026530	Soil	MKRTLLAVALAAAAATAFAAGEPANDQYRNNAGEPDRHQPQVGAIDSSYMVASADPYRPNAGESTDNNVVQNQVG
Ga0209730_10100461	3300027034	Forest Soil	YQRTERDIVMKRTLLAVALAAAAATAFAAGEPTNDQYRNNAGEPDRHQTQLGAIDSSYMVASADKYRPNAGESTDNNVVQNQVG
Ga0209215_10108082	3300027266	Forest Soil	MKRTLLAVALAAAAATAFAAGEPTNDQYRNNAGEPDRHQTQLGAIDSSYMVASADKYRPNAGESTDNNVVQNQVG
Ga0209106_10221264	3300027616	Forest Soil	MKRTLLAIALAAAAATAFAAREPTNDYYRNNAGEPDRHQPQVGAIDSSYMVASADQYRPNAGESTGNNVVQNQVG
Ga0208988_10318153	3300027633	Forest Soil	LAAAAATAFAAREPTNDQYRNNAGEQDQHQPQVGAIDSSYMVASADPYRPNAGESTDNNVVQNQVG
Ga0209388_11263261	3300027655	Vadose Zone Soil	MKRTLLAIALAAAAATAFAAGEPTNDQYRNNAGEPDRHQPQVGAIDSSFTVASADEYRPNAGESTDNNVVQNQVG
Ga0208990_10496261	3300027663	Forest Soil	ALAAAAAAAFAAGEPTNDQYRNNAGEPDRHQPQVGAIDSSYMVASADQYRPNAGESTGNNVVQNQVG
Ga0208981_11101082	3300027669	Forest Soil	MKRILLAVALAAAAATAFAAREPTNDYYRNNAGEPDRHQPQVGAIDSSYMVASADQYRPNAGESTGNNVVQNQVG
Ga0209701_101458062	3300027862	Vadose Zone Soil	MKRTLLAIALAAAAATAFAAGEPANDQYRNNAGEQDRHQPQLGAIDSSYMVASADQYRPNAGESTDNNVVQNQVG
Ga0209590_104457281	3300027882	Vadose Zone Soil	MKRTLLAIALAAAAATAFAAGEPANDQYRNNAGEQDQHQPQVGAIDSSYMVASADPYRPNAGESTDNNVVQNQVG
Ga0137415_105603111	3300028536	Vadose Zone Soil	MKRTLLAIALAAAAATAFAAGEPANDQYRNNAGEQDRHQPQVGAIDSSYMVASADQYRPNAGESTDNNVVQNQVG
Ga0073997_100210693	3300030997	Soil	MKRTLLAIALAAAAATAFAAGEPTNDQYRNNAGEQDRHQPQVGAIDSSYMVASADQYRPNAGESTDNNVVQNQVG

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F079894

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences