Metagenome / Metatranscriptome Family F079867

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F079867
Family Type	Metagenome / Metatranscriptome
Number of Sequences	115
Average Sequence Length	50 residues
Representative Sequence	GRFGEAVEQWDQWERLAARSETELAQLDEVRRAKAAAQTLAGTGTHA
Number of Associated Samples	95
Number of Associated Scaffolds	115

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	1.74 %
% of genes near scaffold ends (potentially truncated)	96.52 %
% of genes from short scaffolds (< 2000 bps)	86.09 %
Associated GOLD sequencing projects	84
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.55

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (50.435 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil (30.435 % of family members)
Environment Ontology (ENVO)	Unclassified (66.957 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (71.304 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 60.00% β-sheet: 0.00% Coil/Unstructured: 40.00%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.55
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.55
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 115 Family Scaffolds
PF13432	TPR_16	33.04
PF14559	TPR_19	19.13
PF03259	Robl_LC7	19.13
PF13371	TPR_9	7.83
PF13414	TPR_11	6.09
PF00308	Bac_DnaA	4.35
PF14332	DUF4388	1.74
PF13428	TPR_14	1.74
PF00691	OmpA	0.87

COG ID	Name	Functional Category	% Frequency in 115 Family Scaffolds
COG2018	Predicted regulator of Ras-like GTPase activity, Roadblock/LC7/MglB family	Signal transduction mechanisms [T]	19.13
COG0593	Chromosomal replication initiation ATPase DnaA	Replication, recombination and repair [L]	4.35
COG1484	DNA replication protein DnaC	Replication, recombination and repair [L]	4.35

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	50.43 %
Unclassified	root	N/A	49.57 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	50.43 %
Unclassified	root	N/A	49.57 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	50.43 %
Unclassified	root	N/A	49.57 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.57 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	40.87 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.87 %
unclassified Bacteria	no rank	All Organisms → cellular organisms → Bacteria → unclassified Bacteria	0.87 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.57 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	40.87 %
bacterium JGI 053	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium JGI 053	0.87 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.87 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.57 %
unclassified Gemmatimonadetes	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes	26.96 %
Gemmatimonadetes	class	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes	1.74 %
bacterium JGI 053	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium JGI 053	0.87 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.87 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.57 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	26.96 %
Gemmatimonadales	order	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales	1.74 %
bacterium JGI 053	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium JGI 053	0.87 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.87 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.57 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	26.96 %
Gemmatimonadaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	1.74 %
bacterium JGI 053	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium JGI 053	0.87 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.87 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.57 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	26.96 %
Gemmatimonas	genus	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatimonas	1.74 %
bacterium JGI 053	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium JGI 053	0.87 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.87 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.57 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	26.96 %
Gemmatimonas aurantiaca	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatimonas → Gemmatimonas aurantiaca	1.74 %
bacterium JGI 053	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium JGI 053	0.87 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.87 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.87 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001661\|JGI12053J15887_10033944	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatimonas → Gemmatimonas aurantiaca	2869	Open in IMG/M
3300002562\|JGI25382J37095_10008389	All Organisms → cellular organisms → Bacteria	3796	Open in IMG/M
3300002908\|JGI25382J43887_10117922	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1385	Open in IMG/M
3300002908\|JGI25382J43887_10174312	Not Available	1064	Open in IMG/M
3300002911\|JGI25390J43892_10083928	Not Available	717	Open in IMG/M
3300002915\|JGI25387J43893_1069875	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	521	Open in IMG/M
3300002916\|JGI25389J43894_1002007	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatimonas → Gemmatimonas aurantiaca	3003	Open in IMG/M
3300002916\|JGI25389J43894_1090265	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	546	Open in IMG/M
3300005174\|Ga0066680_10910212	Not Available	521	Open in IMG/M
3300005176\|Ga0066679_10899471	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	558	Open in IMG/M
3300005178\|Ga0066688_10174184	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1357	Open in IMG/M
3300005178\|Ga0066688_10362688	Not Available	938	Open in IMG/M
3300005179\|Ga0066684_10487109	Not Available	828	Open in IMG/M
3300005187\|Ga0066675_10006420	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	5897	Open in IMG/M
3300005406\|Ga0070703_10202365	Not Available	780	Open in IMG/M
3300005445\|Ga0070708_100150972	Not Available	2160	Open in IMG/M
3300005447\|Ga0066689_10737633	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	615	Open in IMG/M
3300005450\|Ga0066682_10956826	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	507	Open in IMG/M
3300005467\|Ga0070706_101786086	Not Available	559	Open in IMG/M
3300005553\|Ga0066695_10184023	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1307	Open in IMG/M
3300005556\|Ga0066707_10035207	Not Available	2809	Open in IMG/M
3300005561\|Ga0066699_10319848	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1106	Open in IMG/M
3300005568\|Ga0066703_10021614	All Organisms → cellular organisms → Bacteria	3332	Open in IMG/M
3300005569\|Ga0066705_10616810	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	663	Open in IMG/M
3300005569\|Ga0066705_10760876	Not Available	580	Open in IMG/M
3300005587\|Ga0066654_10536310	Not Available	644	Open in IMG/M
3300006031\|Ga0066651_10152341	All Organisms → cellular organisms → Bacteria	1211	Open in IMG/M
3300006046\|Ga0066652_100265696	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1509	Open in IMG/M
3300006046\|Ga0066652_101504790	Not Available	624	Open in IMG/M
3300006796\|Ga0066665_10167655	Not Available	1680	Open in IMG/M
3300006796\|Ga0066665_11488462	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	528	Open in IMG/M
3300006797\|Ga0066659_10086845	Not Available	2092	Open in IMG/M
3300006797\|Ga0066659_11761409	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	523	Open in IMG/M
3300006806\|Ga0079220_11691353	All Organisms → cellular organisms → Bacteria → Proteobacteria	553	Open in IMG/M
3300006903\|Ga0075426_10168090	All Organisms → cellular organisms → Bacteria	1585	Open in IMG/M
3300006914\|Ga0075436_101030574	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	618	Open in IMG/M
3300009808\|Ga0105071_1086638	Not Available	553	Open in IMG/M
3300010301\|Ga0134070_10223942	Not Available	696	Open in IMG/M
3300010303\|Ga0134082_10182602	Not Available	855	Open in IMG/M
3300010321\|Ga0134067_10217821	Not Available	708	Open in IMG/M
3300010323\|Ga0134086_10047780	Not Available	1445	Open in IMG/M
3300010325\|Ga0134064_10059510	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1186	Open in IMG/M
3300010326\|Ga0134065_10019544	Not Available	1899	Open in IMG/M
3300010335\|Ga0134063_10334079	Not Available	734	Open in IMG/M
3300010336\|Ga0134071_10638174	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	559	Open in IMG/M
3300010337\|Ga0134062_10412453	Not Available	663	Open in IMG/M
3300010337\|Ga0134062_10507857	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	607	Open in IMG/M
3300010364\|Ga0134066_10150379	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	730	Open in IMG/M
3300011269\|Ga0137392_11589142	Not Available	512	Open in IMG/M
3300011270\|Ga0137391_11259538	Not Available	587	Open in IMG/M
3300012198\|Ga0137364_10127340	All Organisms → cellular organisms → Bacteria	1821	Open in IMG/M
3300012201\|Ga0137365_10519050	Not Available	875	Open in IMG/M
3300012203\|Ga0137399_11296566	Not Available	612	Open in IMG/M
3300012285\|Ga0137370_10226187	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1103	Open in IMG/M
3300012351\|Ga0137386_10110597	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium JGI 053	1949	Open in IMG/M
3300012355\|Ga0137369_10459322	Not Available	907	Open in IMG/M
3300012357\|Ga0137384_10128280	Not Available	2122	Open in IMG/M
3300012360\|Ga0137375_10386114	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1229	Open in IMG/M
3300012361\|Ga0137360_10162741	Not Available	1780	Open in IMG/M
3300012362\|Ga0137361_10408469	Not Available	1247	Open in IMG/M
3300012975\|Ga0134110_10101736	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1161	Open in IMG/M
3300012976\|Ga0134076_10123335	Not Available	1044	Open in IMG/M
3300012976\|Ga0134076_10636074	Not Available	501	Open in IMG/M
3300014154\|Ga0134075_10525553	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	532	Open in IMG/M
3300014157\|Ga0134078_10673277	Not Available	504	Open in IMG/M
3300015053\|Ga0137405_1370354	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1336	Open in IMG/M
3300015257\|Ga0180067_1021493	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1239	Open in IMG/M
3300015358\|Ga0134089_10057248	Not Available	1432	Open in IMG/M
3300015358\|Ga0134089_10087921	Not Available	1178	Open in IMG/M
3300015358\|Ga0134089_10549462	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	511	Open in IMG/M
3300015359\|Ga0134085_10187064	Not Available	888	Open in IMG/M
3300017654\|Ga0134069_1331873	Not Available	545	Open in IMG/M
3300017656\|Ga0134112_10366459	Not Available	590	Open in IMG/M
3300017659\|Ga0134083_10065442	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1389	Open in IMG/M
3300018431\|Ga0066655_10021910	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	2988	Open in IMG/M
3300018431\|Ga0066655_10641853	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	718	Open in IMG/M
3300018431\|Ga0066655_11387651	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	509	Open in IMG/M
3300018468\|Ga0066662_10035930	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	3006	Open in IMG/M
3300018482\|Ga0066669_10152493	Not Available	1702	Open in IMG/M
3300020003\|Ga0193739_1055310	Not Available	1019	Open in IMG/M
3300020068\|Ga0184649_1274877	All Organisms → cellular organisms → Bacteria → Acidobacteria	622	Open in IMG/M
3300020170\|Ga0179594_10287873	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	622	Open in IMG/M
3300025885\|Ga0207653_10120118	Not Available	945	Open in IMG/M
3300026301\|Ga0209238_1004291	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	5731	Open in IMG/M
3300026301\|Ga0209238_1102347	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	970	Open in IMG/M
3300026301\|Ga0209238_1141484	Not Available	757	Open in IMG/M
3300026305\|Ga0209688_1037046	Not Available	930	Open in IMG/M
3300026310\|Ga0209239_1094083	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1279	Open in IMG/M
3300026310\|Ga0209239_1132457	Not Available	1019	Open in IMG/M
3300026310\|Ga0209239_1344736	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	520	Open in IMG/M
3300026315\|Ga0209686_1202728	Not Available	540	Open in IMG/M
3300026317\|Ga0209154_1307291	Not Available	521	Open in IMG/M
3300026318\|Ga0209471_1067345	All Organisms → cellular organisms → Bacteria	1610	Open in IMG/M
3300026320\|Ga0209131_1382519	Not Available	525	Open in IMG/M
3300026328\|Ga0209802_1076488	All Organisms → cellular organisms → Bacteria	1566	Open in IMG/M
3300026328\|Ga0209802_1253415	Not Available	602	Open in IMG/M
3300026332\|Ga0209803_1276027	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	576	Open in IMG/M
3300026343\|Ga0209159_1175423	Not Available	772	Open in IMG/M
3300026523\|Ga0209808_1217826	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	619	Open in IMG/M
3300026529\|Ga0209806_1037640	All Organisms → cellular organisms → Bacteria	2359	Open in IMG/M
3300026530\|Ga0209807_1264920	Not Available	580	Open in IMG/M
3300026540\|Ga0209376_1027357	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	3634	Open in IMG/M
3300026547\|Ga0209156_10013116	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	5277	Open in IMG/M
3300026548\|Ga0209161_10449343	Not Available	567	Open in IMG/M
3300027775\|Ga0209177_10334770	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	588	Open in IMG/M
3300027846\|Ga0209180_10456630	Not Available	719	Open in IMG/M
3300027875\|Ga0209283_10017171	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	4395	Open in IMG/M
3300027875\|Ga0209283_10673689	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	649	Open in IMG/M
3300028878\|Ga0307278_10513455	Not Available	523	Open in IMG/M
3300031720\|Ga0307469_12115054	Not Available	547	Open in IMG/M
3300031740\|Ga0307468_102562485	Not Available	501	Open in IMG/M
3300032205\|Ga0307472_100216371	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1471	Open in IMG/M
3300032205\|Ga0307472_101981612	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	583	Open in IMG/M
3300033811\|Ga0364924_045640	Not Available	926	Open in IMG/M
3300034164\|Ga0364940_0187750	Not Available	603	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	98.26%
Host-Associated	Host-Associated	1.74%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	96.52%
Aquatic	Environmental → Aquatic	1.74%
Plants	Host-Associated → Plants	1.74%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	94.78%
Floodplain	Environmental → Terrestrial → Floodplain	1.74%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.74%
Freshwater	Environmental → Aquatic → Freshwater	0.87%
Sediment	Environmental → Aquatic → Sediment	0.87%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	88.70%
Loam	Environmental → Terrestrial → Soil → Loam	5.22%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	1.74%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.74%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.87%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.87%
Sand	Environmental → Terrestrial → Soil → Sand	0.87%

Habitat	Taxonomy	Distribution
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	46.96%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	36.52%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	3.48%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.48%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.74%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	1.74%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.74%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.87%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.87%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.87%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.87%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	0.87%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	30.43%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	20.00%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	16.52%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	14.78%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	3.48%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.48%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.74%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.74%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	1.74%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.74%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.87%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	0.87%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.87%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.87%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	0.87%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001661	Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)	Environmental	Open in IMG/M
3300002562	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cm	Environmental	Open in IMG/M
3300002908	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cm	Environmental	Open in IMG/M
3300002911	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_2_20cm	Environmental	Open in IMG/M
3300002915	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_20cm	Environmental	Open in IMG/M
3300002916	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_20cm	Environmental	Open in IMG/M
3300005174	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129	Environmental	Open in IMG/M
3300005176	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128	Environmental	Open in IMG/M
3300005178	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137	Environmental	Open in IMG/M
3300005179	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133	Environmental	Open in IMG/M
3300005187	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124	Environmental	Open in IMG/M
3300005406	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005447	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138	Environmental	Open in IMG/M
3300005450	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005553	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144	Environmental	Open in IMG/M
3300005556	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156	Environmental	Open in IMG/M
3300005561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148	Environmental	Open in IMG/M
3300005568	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152	Environmental	Open in IMG/M
3300005569	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154	Environmental	Open in IMG/M
3300005587	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_103	Environmental	Open in IMG/M
3300006031	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Angelo_100	Environmental	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300009808	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N2_40_50	Environmental	Open in IMG/M
3300010301	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09082015	Environmental	Open in IMG/M
3300010303	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09182015	Environmental	Open in IMG/M
3300010321	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09212015	Environmental	Open in IMG/M
3300010323	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010325	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_2_0_1 metaG	Environmental	Open in IMG/M
3300010326	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010335	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09082015	Environmental	Open in IMG/M
3300010336	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09082015	Environmental	Open in IMG/M
3300010337	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09082015	Environmental	Open in IMG/M
3300010364	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09212015	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012285	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaG	Environmental	Open in IMG/M
3300012351	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaG	Environmental	Open in IMG/M
3300012355	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012360	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_113_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012975	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_11112015	Environmental	Open in IMG/M
3300012976	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_0_1 metaG	Environmental	Open in IMG/M
3300014154	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09212015	Environmental	Open in IMG/M
3300014157	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300015053	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300015257	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT231_16_10D	Environmental	Open in IMG/M
3300015358	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300015359	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09182015	Environmental	Open in IMG/M
3300017654	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300017656	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_11112015	Environmental	Open in IMG/M
3300017659	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300020003	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2a2	Environmental	Open in IMG/M
3300020068	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_65 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300020170	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300025885	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026301	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_20cm (SPAdes)	Environmental	Open in IMG/M
3300026305	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_142 (SPAdes)	Environmental	Open in IMG/M
3300026310	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_2_20cm (SPAdes)	Environmental	Open in IMG/M
3300026315	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126 (SPAdes)	Environmental	Open in IMG/M
3300026317	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121 (SPAdes)	Environmental	Open in IMG/M
3300026318	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128 (SPAdes)	Environmental	Open in IMG/M
3300026320	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm (SPAdes)	Environmental	Open in IMG/M
3300026328	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129 (SPAdes)	Environmental	Open in IMG/M
3300026332	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138 (SPAdes)	Environmental	Open in IMG/M
3300026343	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144 (SPAdes)	Environmental	Open in IMG/M
3300026523	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157 (SPAdes)	Environmental	Open in IMG/M
3300026529	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152 (SPAdes)	Environmental	Open in IMG/M
3300026530	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154 (SPAdes)	Environmental	Open in IMG/M
3300026540	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134 (SPAdes)	Environmental	Open in IMG/M
3300026547	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124 (SPAdes)	Environmental	Open in IMG/M
3300026548	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155 (SPAdes)	Environmental	Open in IMG/M
3300027775	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control (SPAdes)	Environmental	Open in IMG/M
3300027846	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027875	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300028878	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_117	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300033811	Sediment microbial communities from East River floodplain, Colorado, United States - 28_j17	Environmental	Open in IMG/M
3300034164	Sediment microbial communities from East River floodplain, Colorado, United States - 14_s17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12053J15887_100339446	3300001661	Forest Soil	RFGEAVEQWDQWERLAARSETELAQLDEVRRAKAAAQTLAGTGTHA*
JGI25382J37095_100083891	3300002562	Grasslands Soil	VLGYAFVATGRFGEAVEQWDQWERLAPRSDAELKQLDEVRRAKAAAQTLAGTGTHA*
JGI25382J43887_101179221	3300002908	Grasslands Soil	ARGRFVEAVEQWDQWERLAPRVDEELAHLEEVRRAKGAAQVLAGGTSGIHG*
JGI25382J43887_101743122	3300002908	Grasslands Soil	PGVRLAAIGRFAEAVEQWTQWERLAARSETELAQQDDVRRAKTAAQTLAGTGAGFHG*
JGI25390J43892_100839282	3300002911	Grasslands Soil	YALVATGRFAEALEQWDQWERLAPRSEAELARLDDVRRARAAAQTLAGAGTHG*
JGI25387J43893_10698751	3300002915	Grasslands Soil	GRFAEALEQWDQWERLAPRSEAELARLDDVRRARTAAQTLAGVGTHG*
JGI25389J43894_10020076	3300002916	Grasslands Soil	ALVGTGRFGEAVEQWDQWERLAARSEAELAQLEEVRRAKSAAQTLAGTGTHA*
JGI25389J43894_10902651	3300002916	Grasslands Soil	ATGRFAEALEQWDQWERLAPRSEAELARLDDVRRARTAAQTLAGVGTHG*
Ga0066680_109102121	3300005174	Soil	QWDQWERLAAHSESETAQLNQVRRAKAAAQTLAGTRAALNA*
Ga0066679_108994711	3300005176	Soil	AEAVEQWDQWERLAARSEVELAQLDDVRRAKTAAQTLGGAGAGLHG*
Ga0066688_101741843	3300005178	Soil	EAVEQWDQWERLAAHSESETAQLNQVRRAKAAAQTLAGTRAALNA*
Ga0066688_103626882	3300005178	Soil	RLLGYALVATGRFAEALDQWDQWERLAPRSEAELARLDDVRRARAAAQTLAGAGTHG*
Ga0066684_104871092	3300005179	Soil	LAATGRFGEAVEQWDQWERLAAHSEAELAQSDAVHRAKAAAQTLAGTGNSTHG*
Ga0066675_100064201	3300005187	Soil	GYALVATGRFAEAVEQWDQWERLAARSETELTQLDQVRRTKTAAQTLAGTGAALHE*
Ga0070703_102023651	3300005406	Corn, Switchgrass And Miscanthus Rhizosphere	GRFGEAVEQWDQWERLAARSESELAHADEVGRAKAAARTLATGTGTGIHG*
Ga0070708_1001509721	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	ATGRFGEAVEQWDQWERLAPRSDAELKQLDEVRRAKAAAQTLSGTGTHA*
Ga0066689_107376332	3300005447	Soil	EAVEQWDQWERLAARSEVELAQLDEVHRAKTAAQTLGGAGARLHG*
Ga0066682_109568262	3300005450	Soil	VEQWDQWERLAAHSESETAQLNQVRRAKAAAQTLAGTRAALNA*
Ga0070706_1017860862	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	FAEAVEQWDQWERLAAHSESETAQLNQVRRAKAAAQTLAGTRAALNA*
Ga0066695_101840231	3300005553	Soil	WDQWERLAARSETELAQLDEVRRAKAAAQTLAGTGTHA*
Ga0066707_100352071	3300005556	Soil	FGEAVEQWDQWERLAARSETELAQLDEVRRAKAAAQTLAGTGTHA*
Ga0066699_103198481	3300005561	Soil	AVEQWDQWERLAARSEVELAQLDEVHRAKTAAQTLGGAGARLHG*
Ga0066703_100216141	3300005568	Soil	LAAIGRFADAVEQWSRWERLAARSETELAQQGEVRRAKTAAQTLADSGAGFHG*
Ga0066705_106168102	3300005569	Soil	LVATGRFAEALDQWDQWERLAPRSEAELARLDDVRRARAAAQTLAGAGTHG*
Ga0066705_107608762	3300005569	Soil	WSRWERLAARSETELAQQGEVRRAKTAAQTLADSRAGFHG*
Ga0066654_105363102	3300005587	Soil	GRFAEAVEQWDQWERLAARSEVELAQLDDVRRAKTAAQTLGGAGAGLHG*
Ga0066651_101523411	3300006031	Soil	AHRVLGYALAATGRFGEAVEQWDQWERLAARSETELAQLDDVRRAKAAAQTLAGTGTHA*
Ga0066652_1002656964	3300006046	Soil	RLDPLGVAAYRLLGYALVATGRFAEALDQWDQWERLAPRSEAELARLDDVRRARAAAQTLAGAGTHG*
Ga0066652_1015047901	3300006046	Soil	QWERLAARSETELAQLDEVRRAKTAAQTLGGTGAGLHA*
Ga0066665_101676551	3300006796	Soil	LAATGRFTEAVEQWDQWERLAGRSEAELAERDAVQSARTAAQTLAGTGTRIHG*
Ga0066665_114884621	3300006796	Soil	GEAVEQWDQWERLAGHSETELALLDEVHRAKAAAQTLAGTGTHG*
Ga0066659_100868455	3300006797	Soil	GRFAEAVEQWSQWERLAARSETELAQQEDVRRAKTAAQTLAGPGAGVHG*
Ga0066659_117614092	3300006797	Soil	YRLLGYALVATGRFAEALDQWDQWERLAPRSETELARLDEVRRARAAAQTLAGAGTHG*
Ga0079220_116913532	3300006806	Agricultural Soil	AVAAHRVLGYALVATGRFGEAVEQWDQWERLAPRSDAELKQLDEVRRAKAAAQTLAGTGTHA*
Ga0075426_101680904	3300006903	Populus Rhizosphere	GRFGEAVEQWDQWERLAARSETELAQLEEVRRAKAAAQTLAGTGTHA*
Ga0075436_1010305742	3300006914	Populus Rhizosphere	TGRFGEAVEQWDQWERLAARSESELSQVDDVGRSKAAARTLATGTGTGGAMHG*
Ga0105071_10866381	3300009808	Groundwater Sand	RFGEAVEQWDQWERLSAHAETELAHLDAVRRARTAARTLAGTGAGFHG*
Ga0134070_102239421	3300010301	Grasslands Soil	EQWDQWERLAARSETELAQLDEVRRAKAAAQTLAGTGTHA*
Ga0134082_101826022	3300010303	Grasslands Soil	DQWERLAAHSESETAQLNQVRRAKAAAQTLAGTRAALNA*
Ga0134067_102178212	3300010321	Grasslands Soil	AATGRFGEAVEQWDQWERLAARSETELAQLDDVRRAKAAAQTLAGTGTHA*
Ga0134086_100477804	3300010323	Grasslands Soil	GRFAEAVEQWDQWERLAARSEAELAQLDDVRRAKTAAQTLGGTGAGLHG*
Ga0134064_100595103	3300010325	Grasslands Soil	RFAEAVEQWDQWERLAARSEAELAQLDAVRQAKTAAQTLSGAGAGLHG*
Ga0134065_100195441	3300010326	Grasslands Soil	LGYALVATGRFAEALDQWDQWERLAPRSEAELARLDDVRRARVAAQTLAGVETHG*
Ga0134063_103340791	3300010335	Grasslands Soil	ALVATGRFAEAVEQWDQWERLAAHSESETAQLNQVRRAKAAAQTLAGTRAALNA*
Ga0134071_106381741	3300010336	Grasslands Soil	RLASRSEPEVAQLDEVRRAKAAAQTLAAAGAGGHIHG*
Ga0134062_104124531	3300010337	Grasslands Soil	EAVEQWDQWERLAAHSETETAQLNQVRRAKAAAQTLAGTRAALNA*
Ga0134062_105078572	3300010337	Grasslands Soil	LGVAAHRLLGYALVAIGRFTEALDQWTQWERLAPGSEAELARLDDVRRARAAAQTLAGTGTHG*
Ga0134066_101503791	3300010364	Grasslands Soil	SVAAYRLLGYALVATGRFAEALDQWDQWERLAPRSEAELARLDDVRRARAAAQTLAGAGTHG*
Ga0137392_115891421	3300011269	Vadose Zone Soil	AMAYRVLGYALVATGRFGEALEQWDHWERLAARSETELARRDDVERARAAAQTLAGAGTGSHG*
Ga0137391_112595381	3300011270	Vadose Zone Soil	GYALVATGRFGEALEQWDHWERLAARSETELARREDVERARAAAQTLAGAGTGSHG*
Ga0137364_101273401	3300012198	Vadose Zone Soil	LGVAAYRLLGYALVATGRFAEALDQWDQWERLAPRSEAELARLDEVRRARAAAQTLAGASTHG*
Ga0137365_105190502	3300012201	Vadose Zone Soil	LVATGRFAEAVEQWDQWERLAAHSESETAQLNQVRRAKAAAQTLAGTRAALNV*
Ga0137399_112965662	3300012203	Vadose Zone Soil	AEAVEQWSRWERLTARSETELAQQDDVRRAKTAAQTLAGTGAGFNG*
Ga0137370_102261873	3300012285	Vadose Zone Soil	ERLAARSETELAQLDEVRRAKAAAQTLAGTGTHA*
Ga0137386_101105971	3300012351	Vadose Zone Soil	LASRSEQEVARLAEVQRAKAAAQTLAQAGMGTHA*
Ga0137369_104593221	3300012355	Vadose Zone Soil	PLAVAAHRVLGYALTAIGRFGEAVEQWDQWERLAARSETELAHIDGVHRAKAAAQTLAGTGTHG*
Ga0137384_101282801	3300012357	Vadose Zone Soil	HRILGHALAAAGRFGEAVDQWDQWERLAARSEQEVARLAEVQRAKAAAQTLAQAGMGTHA
Ga0137375_103861143	3300012360	Vadose Zone Soil	AIGRFGEAVEQWDQWERLAARSETELAHIDEVHRAKAAAQTLAGTGTHG*
Ga0137360_101627411	3300012361	Vadose Zone Soil	GRFGEAVEQWDQWERLAPRSDVELKQLDDVRRAKAAAQTLAGTGTHA*
Ga0137361_104084691	3300012362	Vadose Zone Soil	AVEQWDQWERLAARSDTELAQLDDVHRAKAAAQTLAGTRAHG*
Ga0134110_101017361	3300012975	Grasslands Soil	ERLAAHSETETAQLNQVRRAKAAAQTLAGTRAALNA*
Ga0134076_101233353	3300012976	Grasslands Soil	RLAAHSESETAQLNQVRRAKAAAQTLAGTGAALNA*
Ga0134076_106360741	3300012976	Grasslands Soil	EQWEQWERLASRSDQESARLEEVQRAKAAAQTLAKAATGSHG*
Ga0134075_105255532	3300014154	Grasslands Soil	WERLAAHSETELAQLDDVRRAKAAAQTLAGTGTHA*
Ga0134078_106732772	3300014157	Grasslands Soil	HRVLGYALAATGRFGEAVEQWDQWERLAARSETELAQLDEVRRAKAAAQTLAGTGTHA*
Ga0137405_13703543	3300015053	Vadose Zone Soil	MERLAARSETELAQLEEVRRAKSAAQTLAGTGTHA*
Ga0180067_10214932	3300015257	Soil	VEQWEQWERLASRSDAETAQLDQVRRAKAAAQTLVGAGVSSHG*
Ga0134089_100572481	3300015358	Grasslands Soil	LAAIGRFAEAVEQWSRWERLAARSETELAQQGEVRRAKTAAQTLADSGAGFHG*
Ga0134089_100879213	3300015358	Grasslands Soil	VAAHRVLGYALAATGRFGEAVEQWDQWERLAARSETELAQLDDVRRAKAAAQTLAGTGTHA*
Ga0134089_105494622	3300015358	Grasslands Soil	QWDQWERLAARSETELAQLDEVRRAKAAAQTLAGTGTHA*
Ga0134085_101870642	3300015359	Grasslands Soil	GRFGEAVEQWDQWERLAARSETELAQLDEVRRAKAAAQTLAGTGTHA*
Ga0134069_13318731	3300017654	Grasslands Soil	AVEQWDQWERLAAHSEAELAQSDAVHRAKAAAQTLAGTGNSTHG
Ga0134112_103664592	3300017656	Grasslands Soil	RFGEAVEQWDQWERLAAHSEAELAQSDAVHRAKAAAQTLAGTGNSTHG
Ga0134083_100654424	3300017659	Grasslands Soil	DQWERLAARSETELAQLDEVRRAKAAAQTLAGTGTHA
Ga0066655_100219101	3300018431	Grasslands Soil	LGVAAYRLLGYALVATGRFAEALDQWDQWERLAPRSEAELARLDDVRRARAAAQTLAGAGTHG
Ga0066655_106418532	3300018431	Grasslands Soil	LGVAAYRLLGYALVATGRFAEALDQWDQWERLAPRSEAELARLDDVRRARVAAQTLAGVETHG
Ga0066655_113876511	3300018431	Grasslands Soil	AVEQWDQWERLAARSETELAQLDDVRRAKAAAQTLAGTGTHA
Ga0066662_100359306	3300018468	Grasslands Soil	ARRAAPIDPLLVGAHRVLGYALAATGRFTEAVEQWDQWERLAGRSEAELAERDAVQSARTAAQTLAGTGTRIHG
Ga0066669_101524934	3300018482	Grasslands Soil	TGRFAEAVEQWDQWERLAAHSESETAQLNQVRRAKAAAQTLAGTRAALNA
Ga0193739_10553101	3300020003	Soil	DPLRAATYRVLGYALVALGRFGEAMEQWDQWERLAPHLEEELAKRDEVRRAREAAQVLAGTAQHG
Ga0184649_12748772	3300020068	Groundwater Sediment	YRVLGYALVALGRFGEALEQWDQWARLAPHEEEEIAKGDEVRRAREAAQVLAGVPPHG
Ga0179594_102878732	3300020170	Vadose Zone Soil	LAVAAHRVLGYALVATARFGEAVEQWDQWERLAPRSDVELKQLDDVRRAKAAAQTLAGTGTHA
Ga0207653_101201181	3300025885	Corn, Switchgrass And Miscanthus Rhizosphere	RMLGFGLVATGRFGEAVEQWDQWERLAARSESELAHADEVGRAKAAARTLATGTGTGIHG
Ga0209238_10042911	3300026301	Grasslands Soil	EQWSRWERLAARSETELAQQGEVRRAKTAAQTLADSRAGFHG
Ga0209238_11023473	3300026301	Grasslands Soil	FGEAVEQWDQWERLAGRSETELAHLDEVHRAKAAAQTLAATGTHA
Ga0209238_11414842	3300026301	Grasslands Soil	WERLAARSEVELAQLDDVRRAKTAAQTLGGAGAGLHG
Ga0209688_10370461	3300026305	Soil	LGYALVATGRFAEALDQWTQWERLAPRSEAELARLDDVRRARAAAQTLAGVGTHG
Ga0209239_10940831	3300026310	Grasslands Soil	YALVATGRFAEALEQWDQWERLAPRSEAELARLDDVRRARAAAQTLAGAGTHG
Ga0209239_11324571	3300026310	Grasslands Soil	YALAAIGRFAEAVEQWTQWERLAASEAELAQQDDVRRAKTAAQTLAGTGAGFHG
Ga0209239_13447362	3300026310	Grasslands Soil	DQWERLAARSEVELAQLDDVHRAKSAAQTLGGAGAGLHG
Ga0209686_12027281	3300026315	Soil	GRFAEAVEQWDQWERLAAHSESETAQLNQVRRAKAAAQTLAGTRAALNA
Ga0209154_13072911	3300026317	Soil	GRFAEAVEQWSQWERLAARSETELAQQEDVRRAKTAAQTLAGTGAGFHG
Ga0209471_10673454	3300026318	Soil	EAVEQWDQWERLAARSETELAQLDEVRRAKAAAQTLAGTGTHA
Ga0209131_13825192	3300026320	Grasslands Soil	AVAAHRVLGYALVATGRFGEAVEQWDQWERLAPRSDVELKQLDDVRRAKAAAQTLAGTGTHA
Ga0209802_10764881	3300026328	Soil	VLGYALAATGRFGEAVEQWDQWERLAGRSETELAQLDEVRRAKAAAQTLAGTGTHA
Ga0209802_12534152	3300026328	Soil	LLPAAYRHLGYALVAGGRFAEAVEQWDQWERLAPRVDEELGQIEEVRRAKGAAQVLAGASRVYG
Ga0209803_12760272	3300026332	Soil	LGYALAATGRFGEAVEQWDQWERLAARSETELAQLDEVRRAKAAAQTLAGTGTHA
Ga0209159_11754231	3300026343	Soil	LAVAGHRVLGYALAATGRFGEAVEQWDQWERLAARSETELAQLDEVRRAKAAAQTLAGTGTHA
Ga0209808_12178261	3300026523	Soil	GRFAEALDQWSQWERLAPRSEAELARLDDVRRARAAAQTLAGVGTHG
Ga0209806_10376405	3300026529	Soil	LAAIGRFADAVEQWSRWERLAARSETELAQQGEVRRAKTAAQTLADSGAGFHG
Ga0209807_12649202	3300026530	Soil	SRWERLAARSETELAQQGEVRRAKTAAQTLADSRAGFHG
Ga0209376_10273571	3300026540	Soil	QWERLAARSETELAQLDEVRRAKAAAQTLAGTGTHA
Ga0209156_100131161	3300026547	Soil	RFAEAVEQWDQWERLAAHSESETAQLNQVRRAKAAAQTLAGTRAALNA
Ga0209161_104493432	3300026548	Soil	AEAVEQWDQWERLAARSETELAQLDDVRRAKQAAQTLAGTGAGLHG
Ga0209177_103347701	3300027775	Agricultural Soil	MLGFALVATGRFGEAVEQWDQWERLAARSESELAQGDEVGRAKAAARTLATGTGTGIHG
Ga0209180_104566302	3300027846	Vadose Zone Soil	GEAVEQWDQWERLAAHSETELAQLADVRRAKAAAQTLAGTGTHG
Ga0209283_100171711	3300027875	Vadose Zone Soil	ALVATGRFGEALEQWDHWERLAARSETELARREDVERARAAAQTLAGAGTGSHG
Ga0209283_106736891	3300027875	Vadose Zone Soil	AFVATGRFGEAVEQWDQWERLAPRSEVELRQLDDVRRAKAAAQTLAGTGTHA
Ga0307278_105134551	3300028878	Soil	SEAVEQWQEWERTASLSDTETAQLEQVRRAKAAAQTLAGVGATSHD
Ga0307469_121150542	3300031720	Hardwood Forest Soil	FAEAVQQWEQWERLASHSDAETAQLEQVRRAKTAAQTLAGVGVPSHD
Ga0307468_1025624851	3300031740	Hardwood Forest Soil	ALVASRRFGEAVQQWEQWERLAARSESEAAHLEDVRRAKAAAQTLASVGATHG
Ga0307472_1002163714	3300032205	Hardwood Forest Soil	HRVLGYALVGTGRFGEAVEQWDQWERLAARSETELAQLEEVRRAKAAAQTLAGTGTHA
Ga0307472_1019816121	3300032205	Hardwood Forest Soil	WERLAARSEAELALLDEVRRAKAAAQTLAGTGSHA
Ga0364924_045640_759_920	3300033811	Sediment	LVQLGRFAEAVEQWEQWERLAPGDEREVSQRDEIQSAKAAAQLLAGTGTRSHA
Ga0364940_0187750_1_204	3300034164	Sediment	RLDPLRAATYRVLGYALVALGRFGEAMEQWDQWERLALHVEEELAKRDEVRRAREAAQVLAGTAQHG

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F079867

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences