Metagenome Family F079860

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F079860
Family Type	Metagenome
Number of Sequences	115
Average Sequence Length	98 residues
Representative Sequence	LLLGVLGAFAVISWSEVSEERRRRVPGWENRVLDGVLSPLTTRDWHVFPVAFALAGRLDLLVPAAAVGAHVFWVTGLVLLLRVLRRT
Number of Associated Samples	95
Number of Associated Scaffolds	115

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	97.39 %
% of genes from short scaffolds (< 2000 bps)	93.91 %
Associated GOLD sequencing projects	90
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.72

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (100.000 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil (17.391 % of family members)
Environment Ontology (ENVO)	Unclassified (36.522 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (49.565 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 63.48% β-sheet: 0.00% Coil/Unstructured: 36.52%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.72
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.72
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Structural matches with SCOPe domains

SCOP family	SCOP domain	Representative PDB	TM-score
f.13.1.0: automated matches	d6xl3a_	6xl3	0.62349
a.213.1.2: DinB-like	d2hkva1	2hkv	0.61701
f.13.1.0: automated matches	d6tk6a_	6tk6	0.61657
f.13.1.0: automated matches	d5jsia_	5jsi	0.6011
a.213.1.2: DinB-like	d2ou6a1	2ou6	0.59673

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 115 Family Scaffolds
PF01957	NfeD	26.09
PF00248	Aldo_ket_red	25.22
PF01145	Band_7	6.09
PF16200	Band_7_C	1.74
PF07944	Glyco_hydro_127	0.87
PF13247	Fer4_11	0.87
PF02720	DUF222	0.87
PF04028	DUF374	0.87
PF08534	Redoxin	0.87
PF04828	GFA	0.87
PF03706	LPG_synthase_TM	0.87
PF02452	PemK_toxin	0.87
PF00266	Aminotran_5	0.87
PF04072	LCM	0.87
PF00903	Glyoxalase	0.87

COG ID	Name	Functional Category	% Frequency in 115 Family Scaffolds
COG0392	Predicted membrane flippase AglD2/YbhN, UPF0104 family	Cell wall/membrane/envelope biogenesis [M]	0.87
COG2121	Uncharacterized conserved protein, lysophospholipid acyltransferase (LPLAT) superfamily	Function unknown [S]	0.87
COG2337	mRNA-degrading endonuclease MazF, toxin component of the MazEF toxin-antitoxin module	Defense mechanisms [V]	0.87
COG3315	O-Methyltransferase involved in polyketide biosynthesis	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.87
COG3533	Beta-L-arabinofuranosidase, GH127 family	Carbohydrate transport and metabolism [G]	0.87
COG3791	Uncharacterized conserved protein	Function unknown [S]	0.87

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	63.48 %
Nitrospirae	phylum	All Organisms → cellular organisms → Bacteria → Nitrospirae	12.17 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1.74 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	63.48 %
Nitrospira	class	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira	11.30 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1.74 %
Thermodesulfovibrionia	class	All Organisms → cellular organisms → Bacteria → Nitrospirae → Thermodesulfovibrionia	0.87 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	63.48 %
Nitrospirales	order	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales	11.30 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1.74 %
Thermodesulfovibrionales	order	All Organisms → cellular organisms → Bacteria → Nitrospirae → Thermodesulfovibrionia → Thermodesulfovibrionales	0.87 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	63.48 %
Nitrospiraceae	family	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae	11.30 %
Thermodesulfovibrionaceae	family	All Organisms → cellular organisms → Bacteria → Nitrospirae → Thermodesulfovibrionia → Thermodesulfovibrionales → Thermodesulfovibrionaceae	0.87 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	0.87 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	63.48 %
Nitrospira	genus	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira	10.43 %
Microbacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae	0.87 %
Thermodesulfovibrio	genus	All Organisms → cellular organisms → Bacteria → Nitrospirae → Thermodesulfovibrionia → Thermodesulfovibrionales → Thermodesulfovibrionaceae → Thermodesulfovibrio	0.87 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	63.48 %
Nitrospira moscoviensis	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira moscoviensis	4.35 %
unclassified Nitrospira	no rank	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → unclassified Nitrospira	1.74 %
Nitrospira defluvii	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira defluvii	1.74 %
Thermodesulfovibrio thiophilus	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → Thermodesulfovibrionia → Thermodesulfovibrionales → Thermodesulfovibrionaceae → Thermodesulfovibrio → Thermodesulfovibrio thiophilus	0.87 %
Leifsonia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Leifsonia	0.87 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	63.48 %
Nitrospira moscoviensis	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira moscoviensis	4.35 %
Nitrospira sp. UW-LDO-01	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → unclassified Nitrospira → Nitrospira sp. UW-LDO-01	1.74 %
Nitrospira defluvii	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira defluvii	1.74 %
Leifsonia rubra	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Leifsonia → Leifsonia rubra	0.87 %
Thermodesulfovibrio thiophilus	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → Thermodesulfovibrionia → Thermodesulfovibrionales → Thermodesulfovibrionaceae → Thermodesulfovibrio → Thermodesulfovibrio thiophilus	0.87 %
Unclassified	root	N/A	0.00 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300004114\|Ga0062593_102007860	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	642	Open in IMG/M
3300005332\|Ga0066388_108788883	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	501	Open in IMG/M
3300005340\|Ga0070689_101846135	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	551	Open in IMG/M
3300005447\|Ga0066689_10204303	All Organisms → cellular organisms → Bacteria	1200	Open in IMG/M
3300005447\|Ga0066689_10958297	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	527	Open in IMG/M
3300005467\|Ga0070706_100569730	All Organisms → cellular organisms → Bacteria	1053	Open in IMG/M
3300005467\|Ga0070706_101582013	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	598	Open in IMG/M
3300005468\|Ga0070707_102241163	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Leifsonia → Leifsonia rubra	514	Open in IMG/M
3300005488\|Ga0074213_105764	All Organisms → cellular organisms → Bacteria	877	Open in IMG/M
3300005518\|Ga0070699_100683880	All Organisms → cellular organisms → Bacteria	937	Open in IMG/M
3300005518\|Ga0070699_101015068	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	761	Open in IMG/M
3300005536\|Ga0070697_101540036	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira defluvii	594	Open in IMG/M
3300005552\|Ga0066701_10304291	All Organisms → cellular organisms → Bacteria	988	Open in IMG/M
3300005554\|Ga0066661_10075300	All Organisms → cellular organisms → Bacteria	1979	Open in IMG/M
3300005555\|Ga0066692_10798709	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	580	Open in IMG/M
3300005557\|Ga0066704_10331024	All Organisms → cellular organisms → Bacteria	1024	Open in IMG/M
3300005560\|Ga0066670_10427718	All Organisms → cellular organisms → Bacteria	815	Open in IMG/M
3300005560\|Ga0066670_10828898	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	561	Open in IMG/M
3300005564\|Ga0070664_102015388	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	548	Open in IMG/M
3300005569\|Ga0066705_10466589	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	791	Open in IMG/M
3300005598\|Ga0066706_11047040	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	626	Open in IMG/M
3300005764\|Ga0066903_100674459	All Organisms → cellular organisms → Bacteria	1814	Open in IMG/M
3300006796\|Ga0066665_10430536	All Organisms → cellular organisms → Bacteria	1090	Open in IMG/M
3300006796\|Ga0066665_11125953	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	598	Open in IMG/M
3300006797\|Ga0066659_10061262	All Organisms → cellular organisms → Bacteria	2422	Open in IMG/M
3300006797\|Ga0066659_11364909	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	592	Open in IMG/M
3300006804\|Ga0079221_10874169	All Organisms → cellular organisms → Bacteria	656	Open in IMG/M
3300006806\|Ga0079220_11374031	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	597	Open in IMG/M
3300006845\|Ga0075421_100550887	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1363	Open in IMG/M
3300006852\|Ga0075433_11880829	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	514	Open in IMG/M
3300006871\|Ga0075434_100264106	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira defluvii	1740	Open in IMG/M
3300006904\|Ga0075424_101246545	All Organisms → cellular organisms → Bacteria	791	Open in IMG/M
3300007076\|Ga0075435_100345134	All Organisms → cellular organisms → Bacteria	1276	Open in IMG/M
3300007265\|Ga0099794_10740495	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	525	Open in IMG/M
3300009012\|Ga0066710_100826315	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1422	Open in IMG/M
3300009012\|Ga0066710_102641860	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → unclassified Nitrospira → Nitrospira sp. UW-LDO-01	720	Open in IMG/M
3300009012\|Ga0066710_102663925	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → unclassified Nitrospira → Nitrospira sp. UW-LDO-01	715	Open in IMG/M
3300009012\|Ga0066710_102729045	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	703	Open in IMG/M
3300009088\|Ga0099830_11273776	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	611	Open in IMG/M
3300009137\|Ga0066709_100093514	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira	3650	Open in IMG/M
3300009137\|Ga0066709_101225928	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1104	Open in IMG/M
3300009137\|Ga0066709_103241225	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	593	Open in IMG/M
3300009137\|Ga0066709_104033496	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	534	Open in IMG/M
3300009147\|Ga0114129_10568912	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae	1472	Open in IMG/M
3300010303\|Ga0134082_10013344	All Organisms → cellular organisms → Bacteria	2977	Open in IMG/M
3300010322\|Ga0134084_10197873	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	702	Open in IMG/M
3300010323\|Ga0134086_10355167	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	580	Open in IMG/M
3300010325\|Ga0134064_10330978	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	589	Open in IMG/M
3300010329\|Ga0134111_10247164	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	731	Open in IMG/M
3300010335\|Ga0134063_10701724	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	523	Open in IMG/M
3300010360\|Ga0126372_11715063	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	670	Open in IMG/M
3300010361\|Ga0126378_11377178	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	798	Open in IMG/M
3300010362\|Ga0126377_11096556	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	865	Open in IMG/M
3300010362\|Ga0126377_12943558	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	549	Open in IMG/M
3300010364\|Ga0134066_10285996	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	586	Open in IMG/M
3300010391\|Ga0136847_11446177	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	622	Open in IMG/M
3300012189\|Ga0137388_10996362	All Organisms → cellular organisms → Bacteria	773	Open in IMG/M
3300012207\|Ga0137381_10320481	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira moscoviensis	1350	Open in IMG/M
3300012356\|Ga0137371_10278738	All Organisms → cellular organisms → Bacteria	1304	Open in IMG/M
3300012357\|Ga0137384_10294211	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira moscoviensis	1351	Open in IMG/M
3300012363\|Ga0137390_10180206	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira moscoviensis	2099	Open in IMG/M
3300012923\|Ga0137359_11494621	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	563	Open in IMG/M
3300012930\|Ga0137407_11982417	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	555	Open in IMG/M
3300012976\|Ga0134076_10567437	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	526	Open in IMG/M
3300012977\|Ga0134087_10149895	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira moscoviensis	1014	Open in IMG/M
3300015372\|Ga0132256_100886458	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira	1008	Open in IMG/M
3300016319\|Ga0182033_10261704	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1410	Open in IMG/M
3300017654\|Ga0134069_1317523	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	555	Open in IMG/M
3300017656\|Ga0134112_10128964	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	964	Open in IMG/M
3300017659\|Ga0134083_10258716	All Organisms → cellular organisms → Bacteria	730	Open in IMG/M
3300017974\|Ga0187777_10297830	All Organisms → cellular organisms → Bacteria	1102	Open in IMG/M
3300017974\|Ga0187777_10989406	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	608	Open in IMG/M
3300018060\|Ga0187765_11029123	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	567	Open in IMG/M
3300019458\|Ga0187892_10067344	All Organisms → cellular organisms → Bacteria	2311	Open in IMG/M
3300019487\|Ga0187893_10168553	All Organisms → cellular organisms → Bacteria	1743	Open in IMG/M
3300025910\|Ga0207684_10498388	All Organisms → cellular organisms → Bacteria	1044	Open in IMG/M
3300025910\|Ga0207684_10606432	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	935	Open in IMG/M
3300025916\|Ga0207663_10820905	All Organisms → cellular organisms → Bacteria	741	Open in IMG/M
3300025923\|Ga0207681_11724003	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	523	Open in IMG/M
3300026298\|Ga0209236_1034337	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	2677	Open in IMG/M
3300026313\|Ga0209761_1086773	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira moscoviensis	1603	Open in IMG/M
3300026324\|Ga0209470_1314218	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	574	Open in IMG/M
3300026328\|Ga0209802_1292647	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	540	Open in IMG/M
3300026332\|Ga0209803_1342904	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	517	Open in IMG/M
3300026524\|Ga0209690_1153395	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	839	Open in IMG/M
3300026548\|Ga0209161_10011907	All Organisms → cellular organisms → Bacteria → Nitrospirae → Thermodesulfovibrionia → Thermodesulfovibrionales → Thermodesulfovibrionaceae → Thermodesulfovibrio → Thermodesulfovibrio thiophilus	6517	Open in IMG/M
3300026548\|Ga0209161_10195795	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1123	Open in IMG/M
3300027655\|Ga0209388_1108324	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	795	Open in IMG/M
3300027909\|Ga0209382_10441538	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1443	Open in IMG/M
(restricted) 3300027995\|Ga0233418_10095360	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	892	Open in IMG/M
3300031538\|Ga0310888_10341963	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	865	Open in IMG/M
3300031640\|Ga0318555_10410777	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	733	Open in IMG/M
3300031720\|Ga0307469_12089859	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	551	Open in IMG/M
3300031723\|Ga0318493_10750165	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	548	Open in IMG/M
3300031740\|Ga0307468_102008756	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	554	Open in IMG/M
3300031765\|Ga0318554_10822092	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	519	Open in IMG/M
3300031778\|Ga0318498_10136714	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1115	Open in IMG/M
3300031795\|Ga0318557_10517205	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	548	Open in IMG/M
3300031820\|Ga0307473_10611245	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	754	Open in IMG/M
3300031820\|Ga0307473_10641833	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	738	Open in IMG/M
3300031949\|Ga0214473_10278359	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1916	Open in IMG/M
3300031949\|Ga0214473_10679322	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira	1126	Open in IMG/M
3300032055\|Ga0318575_10231342	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	931	Open in IMG/M
3300032068\|Ga0318553_10069976	All Organisms → cellular organisms → Bacteria	1756	Open in IMG/M
3300032076\|Ga0306924_11714368	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	658	Open in IMG/M
3300032089\|Ga0318525_10351753	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	756	Open in IMG/M
3300032205\|Ga0307472_101037172	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	771	Open in IMG/M
3300032261\|Ga0306920_101605051	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	925	Open in IMG/M
3300032955\|Ga0335076_11053415	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	696	Open in IMG/M
3300033004\|Ga0335084_10483286	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1273	Open in IMG/M
3300033004\|Ga0335084_10809227	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	951	Open in IMG/M
3300033433\|Ga0326726_10251470	All Organisms → cellular organisms → Bacteria	1646	Open in IMG/M
3300033433\|Ga0326726_12330423	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	520	Open in IMG/M
3300033550\|Ga0247829_11166339	All Organisms → cellular organisms → Bacteria	639	Open in IMG/M
3300034257\|Ga0370495_0333937	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	507	Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	91.30%
Host-Associated	Host-Associated	8.70%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	88.70%
Plants	Host-Associated → Plants	8.70%
Aquatic	Environmental → Aquatic	2.61%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	85.22%
Rhizosphere	Host-Associated → Plants → Rhizosphere	8.70%
Freshwater	Environmental → Aquatic → Freshwater	2.61%
Peat	Environmental → Terrestrial → Peat	1.74%
Cave	Environmental → Terrestrial → Cave	1.74%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	68.70%
Loam	Environmental → Terrestrial → Soil → Loam	10.43%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	6.09%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	6.09%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.61%
Lake	Environmental → Aquatic → Freshwater → Lake	1.74%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	1.74%
Unclassified	Environmental → Terrestrial → Cave → Unclassified	1.74%
Lentic	Environmental → Aquatic → Freshwater → Lentic	0.87%

Habitat	Taxonomy	Distribution
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	26.09%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	22.61%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	13.91%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	8.70%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	6.09%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	6.09%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.61%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.61%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	1.74%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.74%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	1.74%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	1.74%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	1.74%
Unclassified	Environmental → Terrestrial → Cave → Unclassified → Unclassified	1.74%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment	0.87%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	17.39%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	10.43%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	8.70%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	8.70%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	7.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	6.96%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	6.09%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	4.35%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	3.48%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.61%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	2.61%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	2.61%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.74%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.74%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	1.74%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.74%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	1.74%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment → Sediment	0.87%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	0.87%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Sediment	0.87%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.87%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	0.87%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.87%
Microbial Mat On Rocks	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Microbial Mat On Rocks	0.87%
Bio-Ooze	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Bio-Ooze	0.87%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.87%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.87%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.87%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005340	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG	Environmental	Open in IMG/M
3300005447	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005488	Sediment ecosystem from Lake Washington, Seattle, Washington, USA - Methane enrichment	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150	Environmental	Open in IMG/M
3300005554	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110	Environmental	Open in IMG/M
3300005555	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141	Environmental	Open in IMG/M
3300005557	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153	Environmental	Open in IMG/M
3300005560	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_119	Environmental	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005569	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154	Environmental	Open in IMG/M
3300005598	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300007265	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300010303	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09182015	Environmental	Open in IMG/M
3300010322	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010323	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010325	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_2_0_1 metaG	Environmental	Open in IMG/M
3300010329	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_11112015	Environmental	Open in IMG/M
3300010335	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09082015	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010364	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09212015	Environmental	Open in IMG/M
3300010391	Freshwater sediment microbial communities from Lake Superior, USA - Station SU-17. Combined Assembly of Gp0155404, Gp0155335, Gp0155336, Gp0155336, Gp0155403, Gp0155406	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012976	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_0_1 metaG	Environmental	Open in IMG/M
3300012977	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300017654	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300017656	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_11112015	Environmental	Open in IMG/M
3300017659	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300017974	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MG	Environmental	Open in IMG/M
3300018060	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_10_MG	Environmental	Open in IMG/M
3300019458	Bio-ooze microbial communities from a basaltic lava cave in the Kipuka Kanohina Cave System on the Island of Hawaii, USA - MA170107-3 metaG	Environmental	Open in IMG/M
3300019487	White microbial mat communities from a basaltic lava cave in the Kipuka Kanohina Cave System on the Island of Hawaii, USA - MA170107-4 metaG	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025923	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026298	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm (SPAdes)	Environmental	Open in IMG/M
3300026313	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_40cm (SPAdes)	Environmental	Open in IMG/M
3300026324	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125 (SPAdes)	Environmental	Open in IMG/M
3300026328	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129 (SPAdes)	Environmental	Open in IMG/M
3300026332	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138 (SPAdes)	Environmental	Open in IMG/M
3300026524	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150 (SPAdes)	Environmental	Open in IMG/M
3300026548	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155 (SPAdes)	Environmental	Open in IMG/M
3300027655	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1 (SPAdes)	Environmental	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300027995 (restricted)	Sediment microbial communities from Lake Towuti, South Sulawesi, Indonesia - Sediment_Towuti_2014_1_MG	Environmental	Open in IMG/M
3300031538	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D1	Environmental	Open in IMG/M
3300031640	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031723	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f23	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031765	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22	Environmental	Open in IMG/M
3300031778	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f24	Environmental	Open in IMG/M
3300031795	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f19	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031949	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT98D197	Environmental	Open in IMG/M
3300032055	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f23	Environmental	Open in IMG/M
3300032068	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f21	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032089	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f23	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300032955	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.5	Environmental	Open in IMG/M
3300033004	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.4	Environmental	Open in IMG/M
3300033433	Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF15MN	Environmental	Open in IMG/M
3300033550	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day4	Environmental	Open in IMG/M
3300034257	Peat soil microbial communities from wetlands in Alaska, United States - Frozen_pond_02D_17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0062593_1020078602	3300004114	Soil	TVVHLAVLAGIATRLERAGQAPGWPTLAVLFLGVCGAFAVITWSEHTEDRRRAAGGWENAVLDRVLSPLTTRDWHVFPVLFALAGRLDLLVPAAAVGAHAFWAVSLVLLRRALRRAPV*
Ga0066388_1087888832	3300005332	Tropical Forest Soil	GFTVITVSEATEARRHRVACWENRVLDGVLGPLTTRDWYVFPVAFALAGRLAWLVPAAAAGAHVFWLVTLVLLLRVLHAAQLQGSAERVRQ*
Ga0070689_1018461351	3300005340	Switchgrass Rhizosphere	ALLAGIGARIASMGSGPGWPVITLLGLGVVAAFAVVTWSDDTEARRRRVPGWENRILDGVLSPLSTRDWHVFPLAFALAGRLDLLVLGAAVGAHVFWVATLLILLRALRRADAAARSVPG
Ga0066689_102043031	3300005447	Soil	VISWSEHVESRRRRAGGWENRLLDGVLAPLSTRDWYLLVVPFALAGRLDWLVLGAAVGSHVFWIAALVLVMRTLGRAGG*
Ga0066689_109582972	3300005447	Soil	AVLAGIAQRVARAGSAPGWPLLAALLLGVLGAFAMISWSDATEARRARVGGWENRLLDRVLSPLTTRDWHVFPVVFALAGRLDLLVPAAAVGANLFWVTGLVLLLRVLRRT*
Ga0070706_1005697301	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	IAIRVAHGGDPPGWPVLAVLAAGILATFAVVTWSEATETRRRRVAAWENTVLDHVVSPLTTRDWHLFPLAFALAGRLELLVPAAAAGAHLFWLAALVLLVRVLRRAPGLTLRGFPGIRG*
Ga0070706_1015820131	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	VLAALLAGVIGAFAVITWSDETEDRRRRVPSWENRVLDRVLSPLTTRDWHVFPVGFALAGRLDLLVPAAAVGAHLFWTATLVLLIRVLRRISV*
Ga0070707_1022411631	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	LGHWLDVTGDTVVHVAMLAGIARRVARAGSAPGWPLLVALLLGVLGAFAMISWSDATEARRARVGGWENRLLDRVLSPLTTRDWHVFPVLFALAGRLDLLVPAAAVGANLFWVTGLVLLLRVLRRT*
Ga0074213_1057643	3300005488	Sediment	ARAARVGXVGAFAAITWSERTQTRRHRVVAWENGVLDRVLAPLTTRDWYVFPIAFALAGRLDLLVTVAAWGAQAFWIAVVVLVWRVLMIGSKGGSR*
Ga0070699_1006838801	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	GVCGAFAVITWSEHMEDRRRAAGGWENAVLDRVLSPLTARDWHVFPVLFALAGRLDLLVPAAAVGAHAFWAVSLVLLRRALRRASS*
Ga0070699_1010150681	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	AALLLGVVGAFATISWSDATEARRGRVAGWENRLLDGVLSPLTTRDWHVFPVLFALAGRLDLLVPAAAVGAHLFWVIGLVLLLRVLRKT*
Ga0070697_1015400361	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	RFAESSLGHWLDVGGDTLVHLAVLAGIAARLARAGAAPAAPVLGVLLLGVAGAFAVITWSEQTEERRRRAGGWENAVLDRVLSPLTTRDWHVFPVLFALAGRLDVLVPAAAVGAHAFWGVSLAILLRVLRRGSV*
Ga0066701_103042911	3300005552	Soil	GAFAVITWSDATEARRRRVAGWENRLLDRVLSPLTTRDWHVFPVLFALAGRLDLLVPAAAVGAHLFWVIGLVLLLRVLRKT*
Ga0066661_100753001	3300005554	Soil	AGSAPGWPLLAALLLGVVGAFATISWSDATEARRGRVAGWENRLLDRVLSPLTTRDWHVFPVLFALAGRLDLLVPAAAVGAHLFWVIGLVLLLRVLRKTRS*
Ga0066692_107987092	3300005555	Soil	GHWLDVTGDTVVHVAVLAGIAQRVARAGSAPGWPLLAALLLGVLGAFAMISWSDATEARRARVGGWENRLLDRVLSPLTTRDWHVFPVVFALAGRLDLLVPAAAVGANLFWVTGLVLLLRVLRRT*
Ga0066704_103310243	3300005557	Soil	IAVLAGIARRVARTGSAPGWPLLAALLLGVVGAFATISWSDASEARRGRVAGWENRLLDRVLSPLTTRDWHVFPVLFALAGRLDLLVPAAAVGAHLFWVIGLVLLLRVLRKTRS*
Ga0066670_104277181	3300005560	Soil	PLLTALLLGVLGAFAVITWSDATEARRRRVAAWENQLLDRVLSPLTTRDWHVFPVVFALAGRLDLLVPAAAVGANLFWVTGLVLLLRVLRRT*
Ga0066670_108288982	3300005560	Soil	SWSEHVESRRRRAGGWENRVLDGVLAPLSTRDWYLLVVPFALAGRLDWLVLGAAVGSHVFWIAALVLLVSVLRRAPG*
Ga0070664_1020153882	3300005564	Corn Rhizosphere	DDTEARRRRVPGWENRILDGVLSPLSTRDWHVFPLAFALAGRLDLLVLGAAVGAHVFWVATLLILLRALRRADAAARSVPG*
Ga0066705_104665892	3300005569	Soil	HVAVLAGIARRVALTGSAPGWPLLTALLLGVVGAFAVITWSDATEGRRRRVAAWENQLLDRVLSPLTTRDWHVFPVLFALAGRLDLLVPAAAVGAHLFWVIGLVLLLRVLRKT*
Ga0066706_110470401	3300005598	Soil	MISWSDATEARRARVGGWENRLLDRVLSPLTTRDWHVFPVVFALAGRLDLLVPAAAVGANLFWVTGLVLLLRVLRRT*
Ga0066903_1006744591	3300005764	Tropical Forest Soil	GSEATAERRHRVDRWENRVLDGVLGPLTTRDWYVFPVAFALAGRLGWLVPAAAVGAHVFWLVGLVLLLRVLRAAQLQGSAARVRQ*
Ga0066665_104305361	3300006796	Soil	LGHWLDVTGDTVVHLAVLGGIARRVARAGSAPGGPFLAALVLGVVGAFAMISWSDATEARRRRVAAWENRLLDRVLSPLTTRDWHVFPVVFALAGRLDLLVPAAAVGANLFWVTGLVLLLRVLPRARTSS*
Ga0066665_111259532	3300006796	Soil	HWLDVSGDTVGHIAVLVGIALRMTRTGDAPGWPLVAVLLAGVIGAFAVITWSEETEGRRRRLAAWENRVLDGVLSPLTTRDWHVFPVAFALAGRLDLLVPAAAVGAHVFWLTTLVVLLRVLRRAPV*
Ga0066659_100612621	3300006797	Soil	RRRRAGGWENRVLDGVLAPLSTRDWYLLVVPFALAGRLDWLVLGAAVGSQVFWIAALVLLVSVLRRAPV*
Ga0066659_113649091	3300006797	Soil	ISWSDATEARRGRVAGWENRLLDRVLSPLTTRDWHVFPVLFALAGRLDLLVPAAAVGANLFWVTGLVLLLRVLRRTRTGA*
Ga0079221_108741691	3300006804	Agricultural Soil	DVVGDTLVHVAILAGIALRIASEGDAPGWPAAITLLLGIAGSFAVISWSDATEERRRRVACWENRMLDGVLSPLSTRDWHVFPLGFALAGRLDVLVPAAAGGAHAFWAVTLVILLRVLRRAGV*
Ga0079220_113740311	3300006806	Agricultural Soil	VVGAFVVISWSEATEARRQRVPAWENHVLDGVLSPLTTRDWHVFPLAFALAGRLDLLVAGAAVGAHVFWLTTLVVLRRVLARAPA*
Ga0075421_1005508873	3300006845	Populus Rhizosphere	MAAVIGLSTGIVGAFVTITLSEQAEARRRRVPGWENRVLDGVLSPLSTRDWYVFPVALAAAQRLGWLVPAAAVGAHVFWITAAVLLRRALRKSR*
Ga0075433_118808292	3300006852	Populus Rhizosphere	GVCAAFAVITWSEHTEDRRRAAGGWENAVLDRVLSPLTTRDWHVFPVLFALVGRLDLLVPAAAVGAHAFWGVSLVLLRRALRRAPI*
Ga0075434_1002641061	3300006871	Populus Rhizosphere	RLRFAESRLGHWLDVGGDTVVHLAVLAGIATRIERAGHAPGWPTLAVLFLGVCGAFAVITWSEHMEDRRRAAGGWENAVLDRVLSPLTTRDWHVFPVLFALAGRLDLLVPAAAVGAHAFWAVSLVLLRRALRRVSS*
Ga0075424_1012465452	3300006904	Populus Rhizosphere	VITWSEETEDRRRRVPGWENRMLDGVLSPLTTRDWHVFPVAFALAGRLDLLVPAAAVGAHVFWVFTLVLLVRVLSRT*
Ga0075435_1003451343	3300007076	Populus Rhizosphere	IATRLERAGQAPGWPTLAVLFLGVCGAFGVITWSEHTEDRRRAAGGWETAVLDRVLSPLTTRDWHVFPVLFALAGRLDLLVPAAAVGAHAFWAVSLVLLRRALRRAPI*
Ga0099794_107404951	3300007265	Vadose Zone Soil	ALTGSAPGRPLLTALLLGVLGAFAMITWSDATEARRRRVAAWENQLLDGVLSPLTTRDWHVFPVVFALAGRLDLLVPAAAVGANLFWATGLVLLLRVLRRT*
Ga0066710_1008263151	3300009012	Grasslands Soil	LGVLGAFAVISWSEHVESRRRRAGGWENRLLDGVLAPLSTRDWYLLVVPFALAGRLDWLVLGAAVGSHVFWIAALVLVMRTLGRAGG
Ga0066710_1026418601	3300009012	Grasslands Soil	AARIAAAGEPPGWPVLTLLLVGVCGAFGVITWSEQTEERRRRAGGWENAVLDRVLSPLTTRDWHVFPLAFALAGRLDALVPAAAVGAQLFWIAALVLVVRVLRRVSVDTAGAPMDP
Ga0066710_1026639251	3300009012	Grasslands Soil	PLVAVLLAGVIGAFAVITWSEETEGRRRRLAAWENRVLDGVLSPLTTRDWHVFPVAFALAGRLDLLVPAAAVGAHVFWLTTLAVLLRVLRRAPV
Ga0066710_1027290453	3300009012	Grasslands Soil	ISWSEVAEDRRRRAGGWENRVLDGVLGPLSTRDWYVFVVPFALAGRLDWLVFGAAIGAHVFWVAALVLLVRALRRAAR
Ga0099830_112737761	3300009088	Vadose Zone Soil	AALLLGVVGAFATISWSDATEARRGRLAGWENRLLDRVLSPLTTRDWHVFPVLFALAGRLDLLVPAAAVGAHLFWVIGLVLLLRVLRKTRS*
Ga0066709_1000935144	3300009137	Grasslands Soil	VHVAVLAGIVLRMTRAGDAPGWPVVAVLLAGVVGAFAVITWSEESENRRRRVAGWENRVLDGVLSPLTTRDWHVFPVAFALAGRLDLLVPAAAVGAHVFWLATLAVLRRVLRRVPV*
Ga0066709_1012259281	3300009137	Grasslands Soil	RPVLALLGLGILGAFAVITWSEESEVRRHRVEAWENHVLDGVLSPLTTRDWYVFVVAFALAGRLDLLVPAAAAGAHVFWVTVLVLLRRVLRRA*
Ga0066709_1032412251	3300009137	Grasslands Soil	ALGVAGAFAVISWSEVAEDRRRRAGGWENRVLDGVLGPLSTRDWYVFVVPFALAGRLDWLVFGAAIGAHVFWVAALVLLGRALRRAAR*
Ga0066709_1040334961	3300009137	Grasslands Soil	ALGVAGAFAVISWSEVAEDRRRRAGGWENRVLDGVLGPLSTRDWYVFVVPFALAGRLDWLVFGAAIGAHVFWVAALVLLVRALRRAAR*
Ga0114129_105689123	3300009147	Populus Rhizosphere	ERAGHAPGWPTLAVLFLGVCGAFAVITWSEHTEDRRRAAGGWENALLDRVLSPLTTRDWHVFPVLFALAGRLDLLVPAAAVGAHAFWAVSLMLLRRALRRASS*
Ga0134082_100133444	3300010303	Grasslands Soil	PLLTALLLGVLGAFAVITWSDATEARRRRVAAWENQLLDRVLSPLTTRDWHVFPVVFALAGRLGLLVPAAAVGANLFWVTGLVLLLRVLRRT*
Ga0134084_101978732	3300010322	Grasslands Soil	IARRVALTGSAPGWPLLTALLLGVLGAFAVITWSDATEARRRRVAAWENQLLDRVLSPLTTRDWHVFPVVFALAGRLDLLVPAAAVGANLFWVTGLVLLLRVLRRT*
Ga0134086_103551672	3300010323	Grasslands Soil	VHVAVLAGIARRVARAGSAPGWPLLGVLLLGVVGAFAMISWSDATEARRGRVAGWENRLLDRVLSPLTTRDWHVFPVLFALAGRLDLLVPAAAVGAHLFWVTGLVLLMRVLRKT*
Ga0134064_103309782	3300010325	Grasslands Soil	PLLAALLLGVLGAFAMISWSDATEARRGRVAGWENRLLDRVLSPLTTRDWHVFPVLFALAGRLDLLVPAAAVGAHLFWVTGLVLLMRVLRKT*
Ga0134111_102471642	3300010329	Grasslands Soil	PRRARPCHPSRLGHWLDVTGDTVVHVAVLGGITLRVARAGSAPGWPLLAALLLGVLGAFVMISWSDATEARRGRVAGWDNRLLDRVLSPLTTRDWHVFPVLFALAGRLDLLVPAAAVGAHLFWVIGLVLLLRVLRKT*
Ga0134063_107017241	3300010335	Grasslands Soil	LLGVLGAFVMISWSDATEARRRRVAAWENQLLDRVLSPLTTRDWHVFPVLFALAGRLDLLVPAAAVGANLFWVTGLVLLLRVLPRTRTSS*
Ga0126372_117150632	3300010360	Tropical Forest Soil	ALLALSLGVAGGFTVITVSEATEARRHRVACWENRVLDGVLGPLTTRDWYVFPVAFALAGRLAWLVPAAAAGAHVFWLVTLVLLLRVLHAAQLQGSAARVRQ*
Ga0126378_113771782	3300010361	Tropical Forest Soil	EARRHRVACWENQVLDGVLGPLTTRDWYVFPVAFALAGRLAWLVPAAAAGAHVFWLVTLVLLLRVLRAAQLQGSAARVRQ*
Ga0126377_110965561	3300010362	Tropical Forest Soil	STETRRHRVRRWENGVLDGVLAPLTTRDWYVFPIAFALAGRLDLLVPAAAAGAHVFWLVTLVLLLRVLRPVQVQGREPRVRQ*
Ga0126377_129435581	3300010362	Tropical Forest Soil	AGDAPGWPAVAFLLLGIAGAFGVITWSDESESRRQRVPGWENRVLDGVLSPLTTRDWHLFPIAFALAGRLDVLVPAAAVGAQMFWIVTLVILVRALRRARV*
Ga0134066_102859961	3300010364	Grasslands Soil	SAPGWPLLAALLLGVVGAFATISWSDATEARRGRVAGWENRLLDRVLSPLTTRDWHVFPVVFALAGRLDLLVPAAAVGANLFWVTGLVLLLRVLRRT*
Ga0136847_114461771	3300010391	Freshwater Sediment	VPGRPVLALLGLGVLGAFAVITWSEETEVRRHRAAGWENRVLDGILSPLTTRDWYVFPVAFALAGRLDLLVPAAAVGAHVFWVATLVVLLRALRRA*
Ga0137388_109963622	3300012189	Vadose Zone Soil	AFATISWSDATEARRGPVAGWENRLLDRVLSPLTTRDWHVFPVLFALAGRLDLLVPAAAVGAHLFWVIGLVLLLRVLRRTH*
Ga0137381_103204813	3300012207	Vadose Zone Soil	VLAGIVRRVARAGSAPGWPLLAALLLGVVGAFATISWSDATEERRGRVAGWENRLLDRVLSPLTTRDWHVFPVLFALAGRLDLLVPAAAVGAHLFWVTGLVLLMRVLRKT*
Ga0137371_102787382	3300012356	Vadose Zone Soil	VLLLGVVGAFAMISWSDATEARRGRVAGWENRLLDRVLSPLTTRDWHVFPVLFALAGRLDLLVPAAAVGAHLFWVTGLVLLMRVLRKT*
Ga0137384_102942111	3300012357	Vadose Zone Soil	GSAPGWPLRTALLLGVVGAFAVITWSDATEARRRRVAAWENQLLDRVLSPLTTRDWHVFPVLFALAGRLDLLVPAAAVGAHLFWVIGLVLLLRVLRKT*
Ga0137390_101802063	3300012363	Vadose Zone Soil	RVARTGSAPGWPLLTALLLGVVGAFATISWSDATEARRGRLAGWENRLLDRVLSPLTTRDWHVFPVLFALAGRLDLLVPAAAVGAHLFWVIGLVLLLRVLRKTRS*
Ga0137359_114946211	3300012923	Vadose Zone Soil	PGWPLLTALLLGVLGAFAVITWSDATEARRRRVAAWENQLLDRVLSPLTTRDWHVFPVLFVLAGRLDLLVPAAAVGANLFWVTGLVLLLRVLRRTRTGA*
Ga0137407_119824172	3300012930	Vadose Zone Soil	TMRIARAGHSPGWPVLAVLGAGVLGAFAVITWSDQTEERRRRIEAWENRVLDRVLSPLTTRDWHVFPLAFALAGRLDALVPAAAVGAQLFWIAALVLVVRVLRRVSV*
Ga0134076_105674372	3300012976	Grasslands Soil	VVHVAVLAGIARRVALTGSAPGWPLLTALLLGVLGAFAVITWSDATEARRRRVAAWENQLLDRVLSPLTTRDWHVFPVVFALAGRLGLLVPAAAVGANLFWVTGLVLLLRVLRRT*
Ga0134087_101498953	3300012977	Grasslands Soil	GSAPGGPLLTALLLGVVGAFAVITWSDATEGRRRRVAAWENQLLDRVLSPLTTRDWHVFPVLFALAGRLDLLVPAAAVGAHLFWVTGLVLLMRVLRKT*
Ga0132256_1008864583	3300015372	Arabidopsis Rhizosphere	GGDTVVHLAVLAGIATRIERAGYAPGWPTLAVLFLGVCGAFAVITWSEHMEDRRRAAGGWENAVLDRVLSPLTTRDWHVFPVLFALAGRLDLLVPAAAVGAHAFWAVSLVLLRRALRRAPV*
Ga0182033_102617043	3300016319	Soil	GGFAVITLSEATEARRHRVARWENRVLDGVLGPLTTRDWYVFPVAFALAGQLAWLVPAAAAGAHVFWLVTLVLLLRVLRLAQLQGSAARVRQ
Ga0134069_13175232	3300017654	Grasslands Soil	RRVALTGSAPGWPLLTALLLGVLGAFAVITWSDATEARRRRVAAWENQLLDRVLSPLTTRDWHVFPVVFALAGRLDLLVPAAAVGANLFWVTGLVLLLRVLRRT
Ga0134112_101289641	3300017656	Grasslands Soil	TGDTVVHVAVLAGIARRVALTGSAPGWPLLTALLLGVLGAFAVITWSDATEARRRRVAAWENQLLDRVLSPLTTRDWHVFPVVFALAGRLDLLVPAAAVGANLFWVTGLVLLLRVLRRT
Ga0134083_102587161	3300017659	Grasslands Soil	MRIAQAGHSPGWPVLGVLVAGVLGAFAVITWSDQTEERRRRIQAWENRVLDRVLSPLTTRDWHVFPLAFALAGRLDALVPAAAVGAQLFWIAALVLVVRVLRRVSVDTAGAPMDP
Ga0187777_102978303	3300017974	Tropical Peatland	GHWLDVSGDTVVHVAVLAGITARIAREGSAPGWPILGALLLGVLGAFAVITWSEETEARRCRVAAWENRLLDGVLSPLTTRDWHVFPVLFALAGRLDLLVPAAAAGAHAFWIGGLVLLRRALGRVPAGRPA
Ga0187777_109894062	3300017974	Tropical Peatland	VALLFGVASSFAVITWSEATAARRHEVARWENRALDGVLAPLTTRDWYVFPVAFALAGQLRWLVPAAAVGANVFWLAALVLLLRVLRAPQLQGSAARVRQ
Ga0187765_110291231	3300018060	Tropical Peatland	ALLLGVLGAFAVITWSEETEARRCRVAAWENRLLDGVLSPLTTRDWHVFPVLLALAGRLDLLVPAAAVGAHAFWIGGLVLLRRALGRVPARGPA
Ga0187892_100673442	3300019458	Bio-Ooze	VLGAFAAITWSEVNEARRHRVWCWENRVLDGVLSPLTTRDWYVFPLCFALVGRLDWMVHAAAIGAHVFWIVVAVLVARVLRRSST
Ga0187893_101685531	3300019487	Microbial Mat On Rocks	QMGETPSILTLTVLAAGVAGAFVAISLSEQAEPRRRRVPGWENRVLDGVLSPLSTRDWYVFPVALAAAQRLGWLVPAAAVGAHAFWVLTAVLLWRALRKSAAGA
Ga0207684_104983881	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	IAIRVAHGGDPPGWPVLAVLAAGILATFAVVTWSEATETRRRRVAAWENTVLDHVVSPLTTRDWHLFPLAFALAGRLELLVPAAAAGAHLFWLAALVLLVRVLRRAPGLTLRGFPGIRG
Ga0207684_106064322	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	AGAFAIISWSEVTESRRHRVAGWENRVLDGVLGPLSTRDWYVFVVPFALAGRIDWLVLGAAVGAHVFWVVALVLLLRVLQRVPR
Ga0207663_108209051	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	TWSEHMEDRRRAAGGWENAVLDRVLSPLTTRDWHVFPVLFALAGRLDLLVPAAAVGAHAFWAVSLVLLRRALRRVSS
Ga0207681_117240032	3300025923	Switchgrass Rhizosphere	TIAAMIGLATGIAGAFAAITCSEQLEGRRRRVPGWENRVLDGVLSPLSTRDWYVFPVGLAAAGLLGWLVPAAAVGAHVFWVATALLLWRALRKSRAAA
Ga0209236_10343371	3300026298	Grasslands Soil	RVARAGSAPGWPLLAALLLGVVGAFATISWSDATEARRGRVAGWENRLLDRVLSPLTTRDWHVFPVLFALAGRLDLLVPAAAVGAHLFWVIGLVLLLRVLRKTRS
Ga0209761_10867733	3300026313	Grasslands Soil	AFATISWSDATEARRGRVAGWENRLLDRVLSPLTTRDWHVFPVLFALAGRLDLLVPAAAVGANLFWVTGLVLLLRVLRRTRTGA
Ga0209470_13142182	3300026324	Soil	SEHVESRRRRAGGWENRLLDGVLAPLSTRDWYLLVVPFALAGRLDWLVLGAAVGSHVFWIAALVLVMRTLGRAGG
Ga0209802_12926472	3300026328	Soil	WSEHAESRRRRAGGWENRVLDGVLAPLSTRDWYLFVVPFALAGRLDWLVLGAAVGAHVFWVTALVLLGRTLRRARASR
Ga0209803_13429042	3300026332	Soil	AALVLGVVGAFAMISWSDATEARRRRVAAWENRLLDRVLSPLTTRDWHVFPVVFALAGRLDLLVPAAAVGANLFWVTGLVLLLRVLPRARTSS
Ga0209690_11533951	3300026524	Soil	TGDTVVHLAVLGGIARRVARAGSAPGGPFLAALVLGVVGAFAMISWSDATEARRRRVAAWENGLLDRVLSPLTTRDWHVFPVVFALAGRLDLLVPAAAVGANLFWVTGLVLLLRVLPRARTSS
Ga0209161_100119071	3300026548	Soil	RVARAGSAPGWPLLAALLLGVVGAFATISWSDATEARRGRVAGWENRLLDRVLSPLTTRDWHVFPVLFALAGRLDLLVPAAAVGAHLFWVTGLVLLMRVLRKT
Ga0209161_101957952	3300026548	Soil	AVISWSEHVESRRRRAGGWENRVLDGVLAPLSTRDWYLLVVLFALAGRLDWLVLGAAVGSHVFWIAALVLLVSVLRRAPG
Ga0209388_11083241	3300027655	Vadose Zone Soil	RTGSAPGWPLLAALLLGVVGAFATISWSDASEARRGRVAGWENRLLDRVLSPLTTRDWHVFPVVFALAGRLDLLVPAAAVGAHLFWVIGLVLLLRVLRKTRS
Ga0209382_104415383	3300027909	Populus Rhizosphere	SMAAVIGLSTGIVGAFVTITLSEQAEARRRRVPGWENRVLDGVLSPLSTRDWYVFPVALAAAQRLGWLVPAAAVGAHVFWITAAVLLRRALRKSR
(restricted) Ga0233418_100953601	3300027995	Sediment	AGVAGAFVAITWSEATEARRRGVACWENRVLDGALSPLSTRDWYVFPLAFALAGRLDALVAGAAVGAHLFWAAVVVLVARVLRRAPA
Ga0310888_103419631	3300031538	Soil	SGETPSMGAVVGLATGIVGAFATITMSEQAETRRRRVPSWENRVLDGVLSPLSTRDWYVFPVALAATQRLGWLVPAAAVGAHVFWITAAVLLQRALRKSR
Ga0318555_104107772	3300031640	Soil	RHRVARWENRVLDGILGPLTTRDWYVFPVAFALAGQLAWLVPAAAAGAHVFWLVTLVLLLRVLRAAQLQGSAARVRQ
Ga0307469_120898592	3300031720	Hardwood Forest Soil	LLLGVLGAFAVISWSEVSEERRRRVPGWENRVLDGVLSPLTTRDWHVFPVAFALAGRLDLLVPAAAVGAHVFWVTGLVLLLRVLRRT
Ga0318493_107501651	3300031723	Soil	TEERRHRVARWENRVLDGVLGPLTTRDWYVFPVAFALAGQLAWLVPAAAAGAHVFWLVTLVLLLRVLRLAQLQGSAARVRQ
Ga0307468_1020087562	3300031740	Hardwood Forest Soil	VAITWSEHTEARRKQVGGSWENRVLDGVLSPLTTRDWYVFPIAFMLAGRLDELLPAAAWGAQVFWATVSVLVWRVLRRAPAR
Ga0318554_108220921	3300031765	Soil	VALLVGVVAAFAVITWSEETEERRRRVDGWENRVLDRVLAPLTTRDWHVFPLAFALVGRLDALVPAAAVGANVFWVTGLVLLLRASRRDA
Ga0318498_101367141	3300031778	Soil	ALLALFLGVAAGFTVISMSEATEARRHRVARWENRVLDGILGPLTTRDWYVFPVAFALAGQLAWLVPAAAAGAHVFWLVTLVLLLRVLRAAQLQGSAARVRQ
Ga0318557_105172051	3300031795	Soil	VSEATEARRHRVACWENRVLDGILGPLTTRDWYVFPVAFALAGRLAWLVPAAAAGAHVFWLVALVLLLRVLRAAQLQGSAARVRQ
Ga0307473_106112451	3300031820	Hardwood Forest Soil	PGWPALALLGTGVLGAFAVISWSEQTEQRRHRIVCWENRLLDGVLAPLTTRDWHAFVVAFAVVGRLDVLVPAAAVGAHAFWLVTLVPLLRVLARTAPTRASGGS
Ga0307473_106418332	3300031820	Hardwood Forest Soil	FAESRFGHWLDVTGDTVVHVAVLAGIARRVALTGSAPGWPLLTALLLGVVGAFAVITWSDATEARRRRVAAWENQLLDGVLSPLTTRDWHVFPVVFALAGRLDLLVPAAAVGANLFWTTGLVLLLRVLRRT
Ga0214473_102783592	3300031949	Soil	GLGVLGAFAVITWSEETGARRHRVAGWENRVLDGILSPLSTRDWYVFPVAFALAGRLDLLVPAAAVGAHVFWVATLVVLLRALGRA
Ga0214473_106793223	3300031949	Soil	AFAVITWSDSTEDRRRGMDVWENRVLDGILSPLTTRDWYVFPAALALAGRLDVLVPGAAVGAHVFWLVTLVLHVRVLRRAPAAV
Ga0318575_102313422	3300032055	Soil	AVPGRGVLAALGVAVLAAFAVISWSEQTESARRRIDAWENGFLDGVLSPLTTRDWHVFVVAFALAGRLDLLFLGGAIGGNVFWVVTLVLLLRVLRRTRSA
Ga0318553_100699763	3300032068	Soil	ALGVAVLAAFAVISWSEQTESARRRIDAWENGFLDGVLSPLTTRDWHVFVVAFALAGRLDLLFLGGAIGGNVFWVVTLVLLLRVLRRTRSA
Ga0306924_117143682	3300032076	Soil	GAVPGRGVLAALGVAVLAAFAVISWSEQTESARRRIDAWENGFLDGVLSPLTTRDWHVFVVAFALAGRLDLLFLGGAIGGNVFWVVTLVLLLRVLRRTRSA
Ga0318525_103517531	3300032089	Soil	AVISWSEQTESARRRIDAWENGFLDGVLSPLTTRDWHVFVVAFALAGRLDLLFLGGAIGGNVFWVVTLVLLLRVLRRTRSA
Ga0307472_1010371721	3300032205	Hardwood Forest Soil	CALLLGIVGAFAMVTWSEEAETRRHRIGAWENRLLDRVLSPLTTRDWHVFPVLFALAGRLDLLVPAAAVGANVFWATGVVLLWRVLRRARFDTPRASVDP
Ga0306920_1016050511	3300032261	Soil	LAAFAVISWSEQTESARRRIDAWENGFLDGVLSPLTTRDWHVFVVAFALAGRLDLLFLGGAIGGNVFWVVTLVLLLRVLRRTRSA
Ga0335076_110534151	3300032955	Soil	RTGRVPGADVLALLGAGVVLAFAVISWSEQTEARRHQVEAWENGFLDGVLSPLTTRDWHVFVVAFALAGRLDLLVLWGAIGAHAFWITTLVLLRRVLSRC
Ga0335084_104832861	3300033004	Soil	VAGVLGSFALITWSERTEARRHRVDAWENRLLDGVLIRLTTRDWHVFIVAFALAGRLDLLLPAAAVGAPVFGALVLVLMLRVLRRT
Ga0335084_108092272	3300033004	Soil	GVLALLGAGVVLAFGVISWSEQTEARRHRVQAWENGFLDGVLSPLTTRDWHVFVVLFALAGRLDLLVLWGAVGAHVFWVTTLVLLRRVLART
Ga0326726_102514704	3300033433	Peat Soil	EARRHRVVDAWENRVLDGVLAPLTTRDWYVFPIAFAVVGELDALVIAAAWGAQIFWVAVTVLVWRVLARSPAGSSPAALT
Ga0326726_123304231	3300033433	Peat Soil	FVVISWSEHTEARRHAAPGWENRVLDGVLSPLTTRDWYVFPVAFAAAGRLDWLVPAAAVGAHVFWIVALGVLLGALARSR
Ga0247829_111663391	3300033550	Soil	LATGVAGAFAAITWSEATEGRRRRVAGWENRVLDGVLSPFTTRDWYVFPLGFALVGRLDALVAGAAVGAHVFWVSVAVLVTRALRRSSA
Ga0370495_0333937_231_503	3300034257	Untreated Peat Soil	VLGLGIAGAFAAITWSEQTEGRRHRVQGAWENRVLDGVLSPLTTRDWYVFPILFALAGRLDVLVPAAAWGAHVFWVTVAVLVWRVSRTSP

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters