Metagenome / Metatranscriptome Family F079857

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F079857
Family Type	Metagenome / Metatranscriptome
Number of Sequences	115
Average Sequence Length	129 residues
Representative Sequence	MTAVEAQWSPAKHLILGDDPQLRVYAEISIWYKKIELFRKGEDERMFLQDPTPEDMAVHKSLLQRLIADGDHLLSLVQQIGLPENMEGITPESVAATIELLGADYRGWHEPMPAEKREQILREVFPDVT
Number of Associated Samples	93
Number of Associated Scaffolds	115

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	58.26 %
% of genes near scaffold ends (potentially truncated)	21.74 %
% of genes from short scaffolds (< 2000 bps)	76.52 %
Associated GOLD sequencing projects	90
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.73

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (100.000 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (25.217 % of family members)
Environment Ontology (ENVO)	Unclassified (26.087 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (33.913 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 64.33% β-sheet: 0.00% Coil/Unstructured: 35.67%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.73
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.73
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Structural matches with SCOPe domains

SCOP family	SCOP domain	Representative PDB	TM-score
a.25.1.1: Ferritin	d1moja_	1moj	0.66788
a.25.1.0: automated matches	d2c41a_	2c41	0.6645
f.1.3.1: delta-Endotoxin (insectocide), N-terminal domain	d1w99a1	1w99	0.65985
a.25.1.0: automated matches	d2c2ua_	2c2u	0.65882
a.25.1.0: automated matches	d4cyba_	4cyb	0.65501

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 115 Family Scaffolds
PF02452	PemK_toxin	2.61
PF05635	23S_rRNA_IVP	2.61
PF02604	PhdYeFM_antitox	1.74
PF04255	DUF433	1.74
PF05016	ParE_toxin	1.74
PF00534	Glycos_transf_1	1.74
PF13439	Glyco_transf_4	1.74
PF00154	RecA	1.74
PF05685	Uma2	1.74
PF13567	DUF4131	0.87
PF00132	Hexapep	0.87
PF03683	UPF0175	0.87
PF00361	Proton_antipo_M	0.87
PF16396	DUF5005	0.87
PF04221	RelB	0.87
PF07638	Sigma70_ECF	0.87
PF13709	DUF4159	0.87
PF13633	Obsolete Pfam Family	0.87
PF02826	2-Hacid_dh_C	0.87
PF13385	Laminin_G_3	0.87
PF01180	DHO_dh	0.87
PF01609	DDE_Tnp_1	0.87
PF04754	Transposase_31	0.87
PF16277	DUF4926	0.87
PF00535	Glycos_transf_2	0.87
PF00456	Transketolase_N	0.87
PF13470	PIN_3	0.87

COG ID	Name	Functional Category	% Frequency in 115 Family Scaffolds
COG2337	mRNA-degrading endonuclease MazF, toxin component of the MazEF toxin-antitoxin module	Defense mechanisms [V]	2.61
COG0468	RecA/RadA recombinase	Replication, recombination and repair [L]	1.74
COG4636	Endonuclease, Uma2 family (restriction endonuclease fold)	General function prediction only [R]	1.74
COG4118	Antitoxin component of toxin-antitoxin stability system, DNA-binding transcriptional repressor	Defense mechanisms [V]	1.74
COG2161	Antitoxin component YafN of the YafNO toxin-antitoxin module, PHD/YefM family	Defense mechanisms [V]	1.74
COG2442	Predicted antitoxin component of a toxin-antitoxin system, DUF433 family	Defense mechanisms [V]	1.74
COG2886	Predicted antitoxin, contains HTH domain	General function prediction only [R]	0.87
COG5659	SRSO17 transposase	Mobilome: prophages, transposons [X]	0.87
COG5464	Recombination-promoting DNA endonuclease RpnC/YadD	Replication, recombination and repair [L]	0.87
COG5433	Predicted transposase YbfD/YdcC associated with H repeats	Mobilome: prophages, transposons [X]	0.87
COG5421	Transposase	Mobilome: prophages, transposons [X]	0.87
COG3959	Transketolase, N-terminal subunit	Carbohydrate transport and metabolism [G]	0.87
COG3385	IS4 transposase InsG	Mobilome: prophages, transposons [X]	0.87
COG3293	Transposase	Mobilome: prophages, transposons [X]	0.87
COG3077	Antitoxin component of the RelBE or YafQ-DinJ toxin-antitoxin module	Defense mechanisms [V]	0.87
COG3039	Transposase and inactivated derivatives, IS5 family	Mobilome: prophages, transposons [X]	0.87
COG0021	Transketolase	Carbohydrate transport and metabolism [G]	0.87
COG2070	NAD(P)H-dependent flavin oxidoreductase YrpB, nitropropane dioxygenase family	General function prediction only [R]	0.87
COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	Transcription [K]	0.87
COG1304	FMN-dependent dehydrogenase, includes L-lactate dehydrogenase and type II isopentenyl diphosphate isomerase	Energy production and conversion [C]	0.87
COG0167	Dihydroorotate dehydrogenase	Nucleotide transport and metabolism [F]	0.87
COG0069	Glutamate synthase domain 2	Amino acid transport and metabolism [E]	0.87
COG0042	tRNA-dihydrouridine synthase	Translation, ribosomal structure and biogenesis [J]	0.87

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	88.70 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.87 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	88.70 %
Cyanobacteria/Melainabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group	0.87 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	82.61 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	0.87 %
Verrucomicrobiae	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae	0.87 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	82.61 %
Verrucomicrobiales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales	0.87 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	0.87 %
Unclassified	root	N/A	0.00 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2124908032\|Perma_A_C_ConsensusfromContig165802	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	855	Open in IMG/M
2140918008\|ConsensusfromContig241025	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	716	Open in IMG/M
3300000567\|JGI12270J11330_10086836	All Organisms → cellular organisms → Bacteria	1441	Open in IMG/M
3300001213\|JGIcombinedJ13530_104621787	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	891	Open in IMG/M
3300001213\|JGIcombinedJ13530_105471187	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1014	Open in IMG/M
3300001213\|JGIcombinedJ13530_105512623	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	748	Open in IMG/M
3300001213\|JGIcombinedJ13530_109238630	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	501	Open in IMG/M
3300004775\|Ga0007798_10036491	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1090	Open in IMG/M
3300004776\|Ga0007800_10031287	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1281	Open in IMG/M
3300005172\|Ga0066683_10655985	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	628	Open in IMG/M
3300005435\|Ga0070714_100142454	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2153	Open in IMG/M
3300005555\|Ga0066692_10396413	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	875	Open in IMG/M
3300005598\|Ga0066706_10987519	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	650	Open in IMG/M
3300006055\|Ga0097691_1045483	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1568	Open in IMG/M
3300006796\|Ga0066665_10777421	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	757	Open in IMG/M
3300006797\|Ga0066659_11157728	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	647	Open in IMG/M
3300006900\|Ga0066376_10159489	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1372	Open in IMG/M
3300006950\|Ga0075524_10198793	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	873	Open in IMG/M
3300009012\|Ga0066710_100474001	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales	1881	Open in IMG/M
3300009012\|Ga0066710_102036094	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	849	Open in IMG/M
3300009038\|Ga0099829_10771944	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	798	Open in IMG/M
3300009075\|Ga0105090_10516304	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	726	Open in IMG/M
3300009090\|Ga0099827_10999759	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	726	Open in IMG/M
3300009137\|Ga0066709_100387369	All Organisms → cellular organisms → Bacteria	1934	Open in IMG/M
3300009170\|Ga0105096_10026903	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2811	Open in IMG/M
3300009175\|Ga0073936_10009540	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	12059	Open in IMG/M
3300009502\|Ga0114951_10134583	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1373	Open in IMG/M
3300009502\|Ga0114951_10172210	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1177	Open in IMG/M
3300009504\|Ga0114946_10712815	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	502	Open in IMG/M
3300009523\|Ga0116221_1147029	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1027	Open in IMG/M
3300010341\|Ga0074045_10335570	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	987	Open in IMG/M
3300010366\|Ga0126379_12415394	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	625	Open in IMG/M
3300010379\|Ga0136449_103476899	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	601	Open in IMG/M
3300010391\|Ga0136847_10092649	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1220	Open in IMG/M
3300011271\|Ga0137393_11775843	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	505	Open in IMG/M
3300012096\|Ga0137389_11011390	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	712	Open in IMG/M
3300012189\|Ga0137388_11802206	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	544	Open in IMG/M
3300012205\|Ga0137362_11089521	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	679	Open in IMG/M
3300012206\|Ga0137380_10385312	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1247	Open in IMG/M
3300012206\|Ga0137380_10746850	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	847	Open in IMG/M
3300012206\|Ga0137380_11375972	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	590	Open in IMG/M
3300012207\|Ga0137381_11423272	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	585	Open in IMG/M
3300012209\|Ga0137379_10000673	All Organisms → cellular organisms → Bacteria	30349	Open in IMG/M
3300012209\|Ga0137379_10203421	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1893	Open in IMG/M
3300012209\|Ga0137379_10319800	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1463	Open in IMG/M
3300012210\|Ga0137378_10841887	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	830	Open in IMG/M
3300012210\|Ga0137378_10845145	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	828	Open in IMG/M
3300012211\|Ga0137377_10766050	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	898	Open in IMG/M
3300012212\|Ga0150985_107870601	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	591	Open in IMG/M
3300012349\|Ga0137387_10382907	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1019	Open in IMG/M
3300012350\|Ga0137372_10100903	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	2422	Open in IMG/M
3300012351\|Ga0137386_10209457	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1400	Open in IMG/M
3300012351\|Ga0137386_10855229	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	653	Open in IMG/M
3300012353\|Ga0137367_11219367	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	502	Open in IMG/M
3300012359\|Ga0137385_10083353	All Organisms → cellular organisms → Bacteria	2839	Open in IMG/M
3300012362\|Ga0137361_10712703	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	916	Open in IMG/M
3300012362\|Ga0137361_11360179	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	634	Open in IMG/M
3300012363\|Ga0137390_10290490	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1618	Open in IMG/M
3300012411\|Ga0153880_1300951	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	778	Open in IMG/M
3300012469\|Ga0150984_101037608	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	670	Open in IMG/M
3300012923\|Ga0137359_10082873	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2817	Open in IMG/M
3300012923\|Ga0137359_10724250	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	866	Open in IMG/M
(restricted) 3300013138\|Ga0172371_10083615	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	3073	Open in IMG/M
3300014153\|Ga0181527_1125288	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1162	Open in IMG/M
3300014155\|Ga0181524_10009878	All Organisms → cellular organisms → Bacteria	7801	Open in IMG/M
3300014490\|Ga0182010_10027705	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	2611	Open in IMG/M
3300014491\|Ga0182014_10093809	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1831	Open in IMG/M
3300014491\|Ga0182014_10171830	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1199	Open in IMG/M
3300014494\|Ga0182017_10049744	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	2799	Open in IMG/M
3300014496\|Ga0182011_10066160	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2543	Open in IMG/M
3300014498\|Ga0182019_10415040	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	920	Open in IMG/M
3300014502\|Ga0182021_10166337	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	2571	Open in IMG/M
3300014502\|Ga0182021_10220684	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2218	Open in IMG/M
3300014502\|Ga0182021_11596837	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	786	Open in IMG/M
3300014839\|Ga0182027_10197142	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2338	Open in IMG/M
3300014839\|Ga0182027_10771924	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1009	Open in IMG/M
3300014839\|Ga0182027_11105323	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	804	Open in IMG/M
3300019263\|Ga0184647_1104001	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	604	Open in IMG/M
3300019789\|Ga0137408_1417493	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1038	Open in IMG/M
3300020074\|Ga0194113_10000921	All Organisms → cellular organisms → Bacteria	39937	Open in IMG/M
3300020074\|Ga0194113_10097375	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	2592	Open in IMG/M
3300020083\|Ga0194111_10164065	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1675	Open in IMG/M
3300020083\|Ga0194111_10355736	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	985	Open in IMG/M
3300020109\|Ga0194112_10095829	All Organisms → cellular organisms → Bacteria	2682	Open in IMG/M
3300020158\|Ga0194038_1046560	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1349	Open in IMG/M
3300020163\|Ga0194039_1044280	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1676	Open in IMG/M
3300020198\|Ga0194120_10040346	All Organisms → cellular organisms → Bacteria	3950	Open in IMG/M
3300020228\|Ga0194040_1108544	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	813	Open in IMG/M
3300021064\|Ga0206225_1036368	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	958	Open in IMG/M
3300021070\|Ga0194056_10153769	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	813	Open in IMG/M
3300021178\|Ga0210408_10001021	All Organisms → cellular organisms → Bacteria	30871	Open in IMG/M
3300021602\|Ga0194060_10178799	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1106	Open in IMG/M
3300022524\|Ga0224534_1024094	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1561	Open in IMG/M
3300022555\|Ga0212088_10011497	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	13814	Open in IMG/M
3300023090\|Ga0224558_1013479	All Organisms → cellular organisms → Bacteria	4672	Open in IMG/M
3300023091\|Ga0224559_1157326	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	805	Open in IMG/M
3300025447\|Ga0208102_1035997	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	817	Open in IMG/M
3300025533\|Ga0208584_1059489	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	971	Open in IMG/M
3300025852\|Ga0209124_10281088	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	634	Open in IMG/M
3300025865\|Ga0209226_10112651	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1234	Open in IMG/M
3300025865\|Ga0209226_10340146	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	621	Open in IMG/M
3300027846\|Ga0209180_10574737	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	625	Open in IMG/M
3300027854\|Ga0209517_10003619	All Organisms → cellular organisms → Bacteria	20810	Open in IMG/M
3300028800\|Ga0265338_10051492	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	3706	Open in IMG/M
3300031902\|Ga0302322_102000450	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	712	Open in IMG/M
3300031997\|Ga0315278_11508543	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	646	Open in IMG/M
3300031999\|Ga0315274_10071845	All Organisms → cellular organisms → Bacteria	4577	Open in IMG/M
3300031999\|Ga0315274_10235464	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2238	Open in IMG/M
3300032177\|Ga0315276_11946962	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	601	Open in IMG/M
3300032397\|Ga0315287_11369807	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	806	Open in IMG/M
3300032515\|Ga0348332_10905354	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	564	Open in IMG/M
3300032516\|Ga0315273_11948582	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	700	Open in IMG/M
3300032897\|Ga0335071_11599255	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	596	Open in IMG/M
3300033402\|Ga0326728_10034656	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	8250	Open in IMG/M
3300034091\|Ga0326724_0434300	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	688	Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	97.39%
Host-Associated	Host-Associated	2.61%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	64.35%
Aquatic	Environmental → Aquatic	33.04%
Plants	Host-Associated → Plants	2.61%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	57.39%
Freshwater	Environmental → Aquatic → Freshwater	28.70%
Peat	Environmental → Terrestrial → Peat	5.22%
Marine	Environmental → Aquatic → Marine	4.35%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.74%
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface	0.87%
Plant Litter	Environmental → Terrestrial → Plant Litter	0.87%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.87%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	44.35%
Lake	Environmental → Aquatic → Freshwater → Lake	20.00%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	12.17%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	5.22%
Sediment	Environmental → Aquatic → Freshwater → Sediment	4.35%
Wetlands	Environmental → Aquatic → Marine → Wetlands	3.48%
Lentic	Environmental → Aquatic → Freshwater → Lentic	2.61%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	1.74%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.74%
Oceanic	Environmental → Aquatic → Marine → Oceanic	0.87%
Loam	Environmental → Terrestrial → Soil → Loam	0.87%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified	0.87%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	0.87%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.87%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	29.57%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	13.91%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	10.43%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	6.96%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	6.96%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	6.09%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	5.22%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	4.35%
Sediment	Environmental → Aquatic → Marine → Wetlands → Sediment	3.48%
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	2.61%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	1.74%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.74%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.74%
Unclassified	Environmental → Aquatic → Marine → Oceanic → Unclassified	0.87%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.87%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.87%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified	0.87%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	0.87%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.87%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	25.22%
Fen	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen	8.70%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	5.22%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	5.22%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	5.22%
Anoxic Zone Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater	4.35%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	4.35%
Wetland	Environmental → Aquatic → Marine → Wetlands → Sediment → Wetland	3.48%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	3.48%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	2.61%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater	2.61%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.61%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	2.61%
Freshwater Lake Hypolimnion	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake Hypolimnion	1.74%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	1.74%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	1.74%
Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Soil	1.74%
Bog	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog	1.74%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	1.74%
Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment	0.87%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.87%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	0.87%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Sediment	0.87%
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	0.87%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.87%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.87%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.87%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	0.87%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.87%
Deep Subsurface Sediment	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment	0.87%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	0.87%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	0.87%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.87%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	0.87%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.87%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2124908032	Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Perma_all	Environmental	Open in IMG/M
2140918008	Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Bog_all	Environmental	Open in IMG/M
3300000567	Peat soil microbial communities from Weissenstadt, Germany - SII-2010	Environmental	Open in IMG/M
3300001213	Combined assembly of wetland microbial communities from Twitchell Island in the Sacramento Delta (Jan 2013 JGI Velvet Assembly)	Environmental	Open in IMG/M
3300004775	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - MA17M	Environmental	Open in IMG/M
3300004776	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - MA14M	Environmental	Open in IMG/M
3300005172	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005555	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141	Environmental	Open in IMG/M
3300005598	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155	Environmental	Open in IMG/M
3300006055	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-1 deep-072012	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006900	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_Bottom_ad_5009_LV_A	Environmental	Open in IMG/M
3300006950	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE Permafrost154B-one	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009075	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 1-3cm March2015	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009170	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 1-3cm May2015	Environmental	Open in IMG/M
3300009175	Freshwater lake bacterial and archeal communities from Alinen Mustajarvi, Finland, to study Microbial Dark Matter (Phase II) - Alinen Mustajarvi 5m metaG	Environmental	Open in IMG/M
3300009502	Freshwater microbial communities from Finland to study Microbial Dark Matter (Phase II) - AM7a DNA metaG	Environmental	Open in IMG/M
3300009504	Lake sediment microbial communities from Walker lake, Nevada to study Microbial Dark Matter (Phase II) - Walker Lake 11/02/13 Deep Sediment	Environmental	Open in IMG/M
3300009523	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_8_FC metaG	Environmental	Open in IMG/M
3300010341	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM2	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300010391	Freshwater sediment microbial communities from Lake Superior, USA - Station SU-17. Combined Assembly of Gp0155404, Gp0155335, Gp0155336, Gp0155336, Gp0155403, Gp0155406	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012350	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG	Environmental	Open in IMG/M
3300012351	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaG	Environmental	Open in IMG/M
3300012353	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_80_16 metaG	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012411	Freshwater microbial communities from Lake Alinen Mustaj?rvi, Finland - AM7a metatranscriptome (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300013138 (restricted)	Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_022012_12m	Environmental	Open in IMG/M
3300014153	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_60_metaG	Environmental	Open in IMG/M
3300014155	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_60_metaG	Environmental	Open in IMG/M
3300014490	Permafrost microbial communities from Stordalen Mire, Sweden - 611E1M metaG	Environmental	Open in IMG/M
3300014491	Permafrost microbial communities from Stordalen Mire, Sweden - 612S2D metaG	Environmental	Open in IMG/M
3300014494	Permafrost microbial communities from Stordalen Mire, Sweden - 712E3D metaG	Environmental	Open in IMG/M
3300014496	Permafrost microbial communities from Stordalen Mire, Sweden - 711E1D metaG	Environmental	Open in IMG/M
3300014498	Permafrost microbial communities from Stordalen Mire, Sweden - 812E2M metaG	Environmental	Open in IMG/M
3300014502	Permafrost microbial communities from Stordalen Mire, Sweden - 612E3M metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300014839	Permafrost microbial communities from Stordalen Mire, Sweden - 712E1D metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300019263	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019789	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300020074	Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015017 Mahale Deep Cast 200m	Environmental	Open in IMG/M
3300020083	Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015033 Kigoma Deep Cast 300m	Environmental	Open in IMG/M
3300020109	Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015016 Mahale Deep Cast 400m	Environmental	Open in IMG/M
3300020158	Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L227-6m	Environmental	Open in IMG/M
3300020163	Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L227-8m	Environmental	Open in IMG/M
3300020198	Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015019 Mahale Deep Cast 65m	Environmental	Open in IMG/M
3300020228	Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L227-10m	Environmental	Open in IMG/M
3300021064	Subsurface sediment microbial communities from Mancos shale, Colorado, United States - Mancos B2	Environmental	Open in IMG/M
3300021070	Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Sep2016-L442-13m	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021602	Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Sep2016-L222-5m	Environmental	Open in IMG/M
3300022524	Peat soil microbial communities from Stordalen Mire, Sweden - 717 E1 20-24	Environmental	Open in IMG/M
3300022555	Alinen_combined assembly	Environmental	Open in IMG/M
3300023090	Peat soil microbial communities from Stordalen Mire, Sweden - 717 S3 20-24	Environmental	Open in IMG/M
3300023091	Peat soil microbial communities from Stordalen Mire, Sweden - 717 S3 30-34	Environmental	Open in IMG/M
3300025447	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - MA17M (SPAdes)	Environmental	Open in IMG/M
3300025533	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 415-1 deep-072012 (SPAdes)	Environmental	Open in IMG/M
3300025852	Arctic peat soil from Barrow, Alaska - Barrow Graham LP Incubations 011-22A (SPAdes)	Environmental	Open in IMG/M
3300025865	Arctic peat soil from Barrow, Alaska, USA - Barrow Graham LP Ref core NGADG0011-212 (SPAdes)	Environmental	Open in IMG/M
3300027846	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027854	Peat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes)	Environmental	Open in IMG/M
3300028800	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG	Host-Associated	Open in IMG/M
3300031902	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_2	Environmental	Open in IMG/M
3300031997	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G06_0	Environmental	Open in IMG/M
3300031999	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G02_20	Environmental	Open in IMG/M
3300032177	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G05_0	Environmental	Open in IMG/M
3300032397	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G11_0	Environmental	Open in IMG/M
3300032515	FICUS49499 Metatranscriptome Czech Republic combined assembly (additional data)	Environmental	Open in IMG/M
3300032516	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G02_0	Environmental	Open in IMG/M
3300032897	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.5	Environmental	Open in IMG/M
3300033402	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN	Environmental	Open in IMG/M
3300034091	Peat soil microbial communities from McLean, Ithaca, NY, United States - MB00N	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
Perma_A_C_03451410	2124908032	Soil	MTTVEAQWSPVKHLILGDDPQWRVYAEVGVWLKKIELFRKGEDERMVSQEATPEDLAVHKTLLQRLLADGDHLLSLVRQMGLPDNGEGITLASVSANLDLLRADYRGWHEPLPAEKRAQILREAFPAVP
Bog_all_C_01102040	2140918008	Soil	MPSLPLNAKRPNLSAMTAVEQQWTPASHLILGDDPQLRVFADISIWYKKIELFRKGEDERMFLHEPTPEDLAVHKSLLQRLIADGEHLLSLVRQVGLPENRDEITLESAAATLELLQADYRGWHDSMPPEQKQRILAAFTDVA
JGI12270J11330_100868362	3300000567	Peatlands Soil	LGLVGSEFAIPQQTDYFFTMTGLEAKWGVAKHVILGDEPPLRLFAEAVIWQKKIETFRKGEDERMFMQEPTPEDLAVHKSLLQRLIVDGEHLVSLVAQIGLPENVEGISRGSLAATVEMLRAEYRGWHEPMPSEKREQILRQVFPDVT*
JGIcombinedJ13530_1046217872	3300001213	Wetland	MTAVEAQWSPVKHLILGDDPELRVYAEVAVWLKKIELFRKGEDERMFLQEATTEDLAVHRSLLQRLLADGDHLLSLVRQIGLPANIEGITLESVDATLDLLRADYRGWHEPMPAEKRAQILKEVFPDVP*
JGIcombinedJ13530_1054711871	3300001213	Wetland	VRLYAEISVWFKKIELFRKGEDERMFLREPAPEDLVVHKRLVQRLIADGEHFKLLVGQVGLPENLEGIKPEDLAAMLETLRDDYRGWHEPMPAEQRKRLLREVFPEVA*
JGIcombinedJ13530_1055126231	3300001213	Wetland	LGEDPQVRLYAEISVWFKKIELFRKGEDQRMFLRKPAPEDLAVHKRLVQRLIADGEHFKLLVGQVGLPENLEGIKPEDLAAMVETLRDDYRGWHEPMAAEQREQLLREVFPEVA*
JGIcombinedJ13530_1092386301	3300001213	Wetland	MTTLEAEWSPVKHLILGEDPQLRVYAEAAVWLKKVELFRKGEDERMFYQYPTPEDLAVHKALLLRLVADGEHLLSLIGQIGLPENLQGITPESLRATVELLRADYRGWHEPMPAEHRMQLLREVFPDVP*
Ga0007798_100364911	3300004775	Freshwater	LRIYAEVSVWFKKIELFRKGEDERMFLQDPTLEDLAVHKTLLGRLIVDGDHLFSLIQQMGLADNIEGIKSEDVAAIIETLRDTYRGWHEAMPAVKREQLLKDVFPDVA*
Ga0007800_100312872	3300004776	Freshwater	MTAVEAQWSPVQHLILGEDPQLRIYAEVSVWFKKIELFRKGEDERMFLQDPTLEDLAVHKTLLGRLIVDGDHLFSLIQQMGLADNIEGIKSEDVAAIIETLRDTYRGWHELMPAVKREQLLKDVFPDVA*
Ga0066683_106559851	3300005172	Soil	MTALEAQWSPVKHLILGEDPQLRVYAEVCVWHRKIELFRKGEDERMFAQEPTPEDLAVHKSLLQRLLVDGEHLVSLIQQIGLPENTEGITTESVQITLESLRADYRGWHQPMPPEDRKQL
Ga0070714_1001424542	3300005435	Agricultural Soil	LFGEAAVWLKKIEAFREGEDERMFAGDPTPEDLAMHKSLLQRLITDGEHLLSLVAQNGLPENLQEMSRESLAATLETLQADYRGWHQPMSSEKRAQILKAAFPDVA*
Ga0066692_103964131	3300005555	Soil	MTAVEAQWRPAQHSILGDDPQSRLCAEISAWLQKIELFRNGEDQRMFLQEPTSEDLAVHKRLLQRLIADGQHLQSLVRQLGLPANREAITAESLAATVELLQADYRGWHEPMPNGERQKLMREIFPDVP*
Ga0066706_109875191	3300005598	Soil	VTTLEAQWSSAKHLILGDDPQLRLYAEASVWFKKIELFRDGENRRMFLQHPTPEDLAVHKSLLQRLIADGEHLLLLIQQAGLPGNIEGVEAKDVGAAVETLRDSYRGWHEPISAQRRVQVLKEVFPDVT*
Ga0097691_10454832	3300006055	Arctic Peat Soil	VTVAWPAGRTKPSPFYFTLPANAGRPNLSAMTTVEQQWIPARHLILGDDPQLRVFAEISLWYKKIELFRKGEDERMFLHDPTPEDLTVHKSLLQRLIADGEHLLSLVRQVGLPESMDGITLESAVATLELLQADYRGWHAPMPAERRQCILQAAFPDVA*
Ga0066665_107774212	3300006796	Soil	TAVEAKWSPAKHLILGDDPQLRLYAEAAVWLKKIELFRKGEDERMFVQEPTSEDLVVHKSLLQRLIADGAHLLLLVDQVGLPDNTEGITSESVAATVELLRADYRGWHEPMPAEKRDHILREVFPAEARSVAFPRT*
Ga0066659_111577282	3300006797	Soil	MTALEAQWSPVKHLILGEDPQLRVYAEVCVWHRKIELFRKGEDERMFAQEPTPEDLAVHKSLLQRLLVDGEHLVSLIQQIGLPENTEGITTESVQITLESLRADYRGWHQPMPPEDRKQLLKELFPDVA*
Ga0066376_101594892	3300006900	Marine	MTKLEADWSSVQNLILGEDPQLRLYAKAAVWNHKIDVFRRCEDECMISHEPAPEDLAIHKILLQRLIADGDHLLSLIQQIGLPEDPAVISSESVAAILELLRADYRGWHEPMLAEKREQILREVFPDVA*
Ga0075524_101987932	3300006950	Arctic Peat Soil	NAGRPNLSAMTAVETQWIPARHLILGDDPQLRVFAEISLWYKKIELFRKGEDERMFLHDPTPEDLTVHKSLLQRLIADGEHLLSLVRQVGLPESMDGITLESAAATLELLQADYRGWHAPMPAERRQCILQAAFPDVA*
Ga0066710_1004740012	3300009012	Grasslands Soil	LRVYAEVCVWHRKIELFRKGEDERMFAQEPTPEDLAVHKSLLQRLLVDGEHLVSLIQQIGLPENTEGITTESVQITLESLRADYRGWHQPMPPEDRRQLLKELFPDVA
Ga0066710_1020360941	3300009012	Grasslands Soil	MTAVEAKWSPAKHLILGDDPQLRLYAEAAVWLKKIELFRKGEDERMFVQEHTSEDLAVHKSLLQRLIADGAHLLLLVDQVGLPDNTEGITSESVAATVELLRADYRGWHEPMPAEKRDQILREVFPDVA
Ga0099829_107719442	3300009038	Vadose Zone Soil	MLEAQWIPAKHLILGDEPQLRLYGEAAVWLKKIELFRKGEDERMFLQEPTPEDLTVHKSLLQRLIADGDHLLSLVSQIGLPQNVEGITSESLAATVELLRSDYRGWHDPMPAEKRRQILREVFPDVA*
Ga0105090_105163041	3300009075	Freshwater Sediment	MTAVEAQWIPAKHLILGDDPQLRVFGEISVWHQKIESLRKSEDERMVLQAPTPEDLRVHQSLLQRLIADGDYLLSLTRQVGLPENAEGITPDSLAATLDLLRADYRGWHEPMAPDHRERILKTVFPDVA*
Ga0099827_109997591	3300009090	Vadose Zone Soil	DINILCRLFQHQCRRKGEHLILGDEPQLRLYGEAAVWLKKIELFRKGEDERMFLQEPTPEDLTVHKSLLQRLIADGDHLLSLVSQIGLPQNVEGITSESLAATVELLRSDYRGWHDPMPAEKRRQILREVFPDVA*
Ga0066709_1003873693	3300009137	Grasslands Soil	MTALEAQWSPVKHLILGEDPQLRVYAEVCVWHRKIELFRKGEDERMFAQEPTPEDLAVHKSLLQRLLVDGEHLVSLIQQIGLPENTEGITTESVQITLESLRADYRGWHQPMPPEDRRQLLKELFPDVA*
Ga0105096_100269035	3300009170	Freshwater Sediment	MTAVEAQWVPAKHLILGDDPQLRVFGEISVWYKKIESLRQSEDDRMVLHDPTPEDLCVHKSLLERLIADGEYLLSLVGQVGLPENEAGITAESLAAAVELLQADYRGWHEPMPSKKREQILRAAFPDVS*
Ga0073936_100095403	3300009175	Freshwater Lake Hypolimnion	MTTLEAQWSPAKLLILGDDPQLRVYAEVSVWYKKIEMFRQGEDQRMFVQEPTSEDLAVHRSLLCRLIVDGEHLIRLIDQVGLPENLEAITPQSVAASLEVICADYRGWHEPMPAAQRERILQQVFTEVA*
Ga0114951_101345834	3300009502	Freshwater	EVSVWYKKIEMFRQGEDQRMFVQEPTSEDLAVHRSLLCRLIVDGEHLIRLIDQVGLPENLEAITPQSVAASLEVICADYRGWHEPMPAAQRERILQQVFTEVA*
Ga0114951_101722102	3300009502	Freshwater	MTAVEAQWSPVQHLILGEDPQLRIYAEVSVWFKKIELFRKGEDERMFLQDPTLEDLAVHKTLLGRLIVDGDHLFSLIQQMGLADNIEGIKSEDVAAIIETLRDTYRGWHEPMPAVKREQLLKDVFPDVA*
Ga0114946_107128151	3300009504	Sediment	HLILGDDPQLRVFGEISVWYKKIESLRQSENDRMVLHDPTPEDLRVHKSLLQRLIADGEYLLSLVAQVGLPENDAAITAESLAAAVELLQADYRGWHEPMSPEKRNQILRAVFPDVS*
Ga0116221_11470292	3300009523	Peatlands Soil	FTMTGLEAKWGVAKHVILGDEPPLRLFAEAVIWQKKIETFRKGEDERMFMQEPTPEDLAVHKSLLQRLIVDGEHLVSLVAQIGLPENVEGISRGSLAATVEMLRAEYRGWHEPMPSEKREQILRQVFPDVT*
Ga0074045_103355702	3300010341	Bog Forest Soil	MTAVEAQWSPVQHLILGEDPQLRIYAEVSVWFKKIELFRKEEEERLFLQKPTPEDLAVHKTLLQRLVTDGDHLFSLIQQMGLPENLEGIKSDDVAATIETLRDTYCGWHEPVPAEQRDQILREVFPDVPYPSHERSASEGRNREGGRLI*
Ga0126379_124153942	3300010366	Tropical Forest Soil	MTTLEAQWSPVKAIILGEDPQLRIFAEVSVWYKKIELFRKGEDQRMFGQEPTPEDLAVHKSLLQRLIADGEHLILLIEQIGLPENFEGVTPESVRITLETLQADYRGWHQPMPSAQREKLLKELFPNVSQRAD*
Ga0136449_1034768991	3300010379	Peatlands Soil	MTAVEAQWVPAKHLILGEDPQLRVFAEISVWYKKIEMFRKGEDQRMVLHEPTPEDLTAHKSLLQRLIADGEHLLSLVRQVGLPENSDGITLETVAATQELLQADFRGWHEPMSAERRLRILKAPFPDVA*
Ga0136847_100926491	3300010391	Freshwater Sediment	MTAVEAQWSPAKHLILGDDPQLRVYAEISIWYKKIELFRKGEDERMFLQDPTPEDMAVHKSLLQRLIADGDHLLSLVQQIGLPENMEGITPESVAATIELLGADYRGWHEPMPAEKREQILREVFPDVT*
Ga0137393_117758431	3300011271	Vadose Zone Soil	MLEAQWIPAKHLILGDEPQLRLYGEAAVWLKKIELFRKGEDERMFLQEPTPEDLTVHKSLLQRLIADGDHLLSLVSQIGLPQNVEGITSESLAATVELLRSDYRGWHDPMPAEKRRQILREVFP
Ga0137389_110113902	3300012096	Vadose Zone Soil	MTALEAQWSPVKHLILGEDPQLRVYAEVCVWHRKIELFRKGEDERMFAQEPTPEDLAVHKSLLQRLLVDGEHLVSLIQQIGLPENTEGITAESVQITLESLRADYRGWHQPMPPEQRKQLLNELFPDVA*
Ga0137388_118022061	3300012189	Vadose Zone Soil	MTAVEAQWSPVKHLILGDDPQVRIYAEVSVWYRKIELFRKGEDKRMFVQEPTAEDLVVHRSLLQRLIADGEHLASLIRQVGLPENAEGITPDSVDVTLEALRADYRGWHEPMAPEARARLLKEAFPDVP*
Ga0137362_110895211	3300012205	Vadose Zone Soil	MLEAQWIPAKHLILGDEPQLRLYGEAAVWLKKIELFRKGEDERMFLQEPTPEDLAVHKSLLQRLIADGDHLLSLVSQIGLPQNVEGITSESLAATVELLRSDYRGWHDPMPAEKRRQILREVFPDVA*
Ga0137380_103853122	3300012206	Vadose Zone Soil	MTALEAQWNPVRHLILGDDPQLRIFEEVSVWYRKIDVFRKGEDLRMFVQEPTREDLAVHKSLLQRLMADGEHLVSLIQMFGLPENAQDMTPQSVSATVEALRADYRGWHEPMAPEKRQQLLKVLFPDVT*
Ga0137380_107468503	3300012206	Vadose Zone Soil	MLEAQWIPAKHLILGDEPQLRLYGEAAVWLKKIELFRKGEDERMFLQEPTPEDLTVHKSLLQRLIADGDHLLSLVSQIGLPQNVEGITSESLAATVELLRSDYRGWHDPMPAEKRRQILREVF
Ga0137380_113759722	3300012206	Vadose Zone Soil	DDPQLRIFEEVSVWYRKIDVFRKGEDLRMFVQQPTQEDLAVHKSLLQRLIADGEHLVSLIQMFGLPENAQEMTPQSVGATVEALRADYRGWHEPMAPEKREQLLKELFPDVA*
Ga0137381_114232721	3300012207	Vadose Zone Soil	MTAVEAKWSPAKHLILGDDPQLRLYAEAAVWLKKIELFRKGEDERMFVQEPTSEDLVVHKSLLQRLIADGAHLLLLVDQVGLPDNTEGITSESVAATVELLRADYRGWHEPMPAEKRDHILREVFPDVA*
Ga0137379_1000067332	3300012209	Vadose Zone Soil	MTALEAQWNPVRHLILGDDPQLRIFEEVSVWYRKIDVFRKGEDLRMFVQQPTQEDLAVHKSLLQRLIADGEHLVSLIQMFGLPENAQEMTPQSVGATVEALRADYRGWHEPMAPEKREQLLKELFPDVA*
Ga0137379_102034211	3300012209	Vadose Zone Soil	VTTLEAQWSSAKHLILGDDPQLRLYAEASVWFKKIELFRDGENRRMFLQHPTPEDLAVHKSLLQRLIADGEHLLLLIEQAGFPGNIEGVEAKDVGAAVETLRDSYRGWHEPISAQRRAQVLKEVFPDVT*
Ga0137379_103198001	3300012209	Vadose Zone Soil	MTMLEAQWIPAKHLILGDEPQLRLYGEAAVWLKKIELFRKGEDERMFLQEPTPEDLTVHKSLLQRLIADGDHLLSLVSQIGLPQNVEGITSESLAATVELLRSDYR
Ga0137378_108418871	3300012210	Vadose Zone Soil	MLEAQWIPAKHLILGDEPQLRLYGEAAVWLKKIELFRKGEDERMFLQEPTPEDLTVHKSLLQRLIADGDHLLSLVSQIGLPQNVEGITSESLAATVELLRSDYRGWHDPMPAEKRRQILREVFPEVA*
Ga0137378_108451451	3300012210	Vadose Zone Soil	VTTLEAQWSPAKHLILGDDPQLRLYAEASVWFKKIELFRDGENRRMFLQDPTPEDLAVHKSLIQRLIADGEHLLLLIQQVGLPSNIEGVKPEDVGAALETLRDSYRGWHEPISAQRRAQVLNEVFPDVT*
Ga0137377_107660501	3300012211	Vadose Zone Soil	MTALEAQWTPAKHFILGDDPQLRLYAEAAVWLKKIELFRKGEDERMFAQDPTPEDLAIHKSLLQRLIADGEHLLSLLQQVGLPVNVEGISSESVAATQALLRADYRGWHEPMPREKRDQILKQVFPDVA*
Ga0150985_1078706012	3300012212	Avena Fatua Rhizosphere	GAAKHLILGDDPQLRGFAEAAVWLKKLETFRKGENQRMFDQEPTPEDLALHRSLLQRLIADGEHLLSLISQLGFPENTEGISGESLAATIELLRADYRGRHEPMAKEKRDQILNHVFPDVP*
Ga0137387_103829073	3300012349	Vadose Zone Soil	LEAQWSPVKHLILGEDPQLRVYAEVCVWYKKIELFRKGEDERMFVQDPTPEDLAVHKSLLQRLLADGDHLVSLIQQLGLPENTESITAESVAITLEALRADYRGWRQPMPPERRKQLLKELFPDVA*
Ga0137372_101009033	3300012350	Vadose Zone Soil	VTTLEAQWNPAKHLILGDDPQLRLYAEASVWFKKIELFREGENRRMFLQHPTPEDRAVHKSLLQRLIADGEHLLLLIQQAGLPSNIEGVEAKDVGAAVETLRDSYRGWHEPISAQRRAQVLKEVFPDVP*
Ga0137386_102094571	3300012351	Vadose Zone Soil	VTTLEAQWSSAKHLILGDDPQLRLYAEASVWFKKIELFRDGENRRMFLQHPTPEDLAVHKSLLQRLIADGEHLLLLIEQASLPGNIEGVEAKDVGAAVETLRDSYRGWHEPISAQRRAQVLKEVFPDVP*
Ga0137386_108552292	3300012351	Vadose Zone Soil	MLEAQWIPAKHLILGDEPQLRLYGEAAVWLKKIELFRKGEDERMFLQEPTPEDLTVHKSLLQRLTADGDHLLSLVSQIGLPQNVEGITSESLAATVELLRSDYRGWHDPMPAEKRRQILREVFPDVA*
Ga0137367_112193671	3300012353	Vadose Zone Soil	VTTLEAQWSPAKHLILGDDPQLRLYAEASVSFKKIELFRDGENRRMFLQNPTPEDLAVHKSLIQRLIADGEHLLLIIQQVGLPSNIEGVKPEDVGAAVETLRDSYRGWHEPISAQRQTQVLNEVFPDVT*
Ga0137385_100833532	3300012359	Vadose Zone Soil	MTALEAQWNPVRHLILGDDPQLRIFEEVSVWYRKIDVFRKGEDLRMFVQQPTQEDLAVHKSLLQRLIADGEHLVSLIQMFGLPENAQEMTPQSVGATVEALRADYRGWHEPMAPEKRQQLLKVLFPDVT*
Ga0137361_107127031	3300012362	Vadose Zone Soil	MTALEAQWNPVRHLILGDDPQLRIFEEVSVWYRKIDVFRKGEDLRMFVQQPTQEDLAVHKSLLQRLIADGEHLVSLIQMFGLPENAEEMTPQSVGATVEALRADYRGWHEPMAPEKREQLLKELFPDVA*
Ga0137361_113601791	3300012362	Vadose Zone Soil	MTTLEAQWSPVQHLILGDDPQVRIYAEVSVWYRKIEIFRIGEDQRMFIQDPTPADLAVHKSLLQRLIADGEHLLSLIRQVGLPENTESVTPESVGVTVEALRADYRGWHEPMPPEQRAKMLKELFVEAA*
Ga0137390_102904904	3300012363	Vadose Zone Soil	MLEAQWIPAKHLILGDEPQLRLYGEAAVWLKKIELFRKGEDERMFLQEPTREDLAVHKSLLQRLIADGDHLLSLVSQIGLPQNVEGITSESLAATVELLRSDYRGWHDPMPAEKRRQILREVFPDVA*
Ga0153880_13009511	3300012411	Freshwater Sediment	AQWSPVQHLILGEDPQLRIYAEVSVWFKKIELFRKGEDERMFLQDPTLEDLAVHKTLLGRLIVDGDHLFSLIQQMGLADNIEGIKSEDVAAIIETLRDTYRGWHEPMPAVKREQLLKDVFPDVA*
Ga0150984_1010376081	3300012469	Avena Fatua Rhizosphere	QWGAAKHLILGDDPQLRVFAEAAVWLKKLETFRKGENQRMFDQEPTPEDLALHRSLLQRLIADGEHLLSLISQLGFPENTEGISGESLAATIELLRADYRGRHEPMAKEKRDQILNHVFPDVP*
Ga0137359_100828733	3300012923	Vadose Zone Soil	MTTLEAQWSPVKHLILGEDPQLRIYAETSVWYRKIELFRKGEDERMFIQEPTAEDLTVHKSLLQRLIADGSHLVSLIEQVGLPESIEGITPASVGITLEALRADYRGWHEPMPSEKRARILQELFSDVA*
Ga0137359_107242501	3300012923	Vadose Zone Soil	ISLMTTLEAQWTPAKHLILGDDPQVRVYGEAAVWLKKIELFRKGEDERMFLQEPTPEDLAVHKSLLQRLIADGDHLLSLVNQIGLPDNVEGITSDSLAATVELLRSDYRGWHDPMPAEKREQLLGQVFPDVA*
(restricted) Ga0172371_100836151	3300013138	Freshwater	MTAVEAQWSPVQHLILGEDPQLRNYAEVSVWFKKIELFRKGEDQRMFLQKPTPDDLVVHQALLQRLIADGGHLLSLIHQTGLPENLEGIKPEDVAAAVETLRDSYRGWHEPVPAEQREQMLREVFPDVPLMTTRSFAG*
Ga0181527_11252883	3300014153	Bog	MTAVEAQWSPVQHLILGEDPQLRIYAEVSVWFKKIELFRKGEDERMFLQEPTPEDLAVHKTLLQRLIADGDHLLSLIQQMGLPENIEGIKPEDVAATIETLRDTYRGWHEPMPA
Ga0181524_100098785	3300014155	Bog	MTAVEAQWSPVRHLILGEDPQLRIYAEVSVWFKKIELFRKGEDERMFLQEPTAEDLAVHKTLLQRLIADGDHLLSLIQQMGLPENIEGIKSEDVAATIETLRDTYRGWHEPMSAEKREQMLREVFPEVT*
Ga0182010_100277055	3300014490	Fen	GLRMTAVEAQWSPVQHLILGEDPQLRIYAEVSVWFKKIELFRKGEDERMFLQEPTPEDLAVHQTLLQRLIADGDHLLSLIRQMGLPENIEGIRSEDVAATIETLRDTYRGWHEPVPAEKREQMLREVFPDVT*
Ga0182014_100938092	3300014491	Bog	MTAVEAQWSPLKLLILGEDPQLRLYAEVSVWYKKIEMFRKGEDQRMFVQEPTSEDLAVHRSLLRRLIADGEHLVCLIDQIGLPENVEAITPQSVSATLEAIRADYRGWHEPMPAQLRERILHQVFRDVA*
Ga0182014_101718302	3300014491	Bog	MTAVEAQWSPVQHLILGEDPQLRIYAEVSVWFKKIELFRKGEDERMFLQEPTPEDLAVHKTLLQRLIADGDHLLSLIQQMGLPENIEGIKPEDVAATIETLRDTYRGWHEPMPAERREQMLREVFPDVIHYDYKEFRRMKRKQEWPKLRQ*
Ga0182017_100497445	3300014494	Fen	MTAVEQQWTPASHLILGDDPQLRVFADISIWYKKIELFRKGEDERMFLHEPTPEDLAVHKSLLQRLIADGEHLLSLVRQVGLPENRDEITLESAAATLELLQADYRGWHDSMPPDQKQRILAAFPDVP*
Ga0182011_100661602	3300014496	Fen	MTAVEQQWTPASHLILGDDPQLRVFADISIWYKKIELFRKGEDERMFLHEPTPEDLAVHKSLLQRLIADGEHLLSLVRQVGLPENRDEITLESAAATLELLQADYRGWHDSMPPEQKQRILAAFTDVA*
Ga0182019_104150403	3300014498	Fen	MTAVETQWIPARHLILGDDPQLRVFAEISLWYKKIELFRKGEDERMFLHDPTPEDLTVHKSLLQRLIADGEHLLSLVRQVGLPESTDGITLESAAATLELLQADYRGWHAPMPAERRQCILTAAFPDGA*
Ga0182021_101663375	3300014502	Fen	MTAVEAQWSPVQHLILGEDPQLRIYAEVSVWFKKIELFRKGEDERMFLHEPTPEDLAVHKTLLQRLIADGDHLLSLIQQLGLPENIEGIKSEDVAATIETLRDTYRGWHEPMPAEKREQMLREVFPDVT*
Ga0182021_102206846	3300014502	Fen	MTAVETQWIPARHLILGDDPQLRVFAEISLWYKKIELFRKGEDERMFLHDPTPEDLTVHKSLLQRLIADGEHLLSLVRQVGLPESTDGITLESAAATLELLQADYRGWHAPMPAQRRQCILQAAFPDVAYRSNAANPAHGRADALGS*
Ga0182021_115968372	3300014502	Fen	MTAVEAQWSPVQHLILGEDPQLRIYAEVSVWFKKIELFRKGEDERMFLQEPTPEDLAVHQTLLQRLIADGDHLLSLIRQMGLPENIEGIKSEDVAAIIETLRDTYRGWHEPVPAEKREQMLREVFPDVT*
Ga0182027_101971427	3300014839	Fen	MPSLQLNAKRPNLSAMTAVEQQWTPASHLILGDDPQLRVFADISIWYKKIELFRKGEDERMFLHEPTPEDLAVHKSLLQRLIADGEHLLSLVRQVGLPENRDEITLESAAATLELLQADYRGWHDSMPPDQKQRILAAFPDVP*
Ga0182027_107719241	3300014839	Fen	MTAVEAQWSPVQHLILGEDPQLRIYAEVSVWFKKIELFRKGEDERMFLQEPTPEDLAVHKTLLQRLIADGDHLLSLIQQMGLPENIEGIQSEDVAAAVETLRDTYRGWHEPMPAGTREQMLREVFPDVIAPDYKEFRRMKRKQEWPKLRQ*
Ga0182027_111053232	3300014839	Fen	MTAVEQQWTPASHLILGDDPQLRVFAEISLWYKKIELFREGEDERMFLHEPTPEDLAVHKSLLRRLMADGEHLLSLVRQGGLPENRDGITLESAAATLELLQADYRGWHDSMPPDQKQRILAAFPDVP*
Ga0184647_11040011	3300019263	Groundwater Sediment	WSPVQNLILGENPQLRIYAEVSVWFKKIEMFREGEDARMFLQDPTPQDLAVHKSLLQRLIADGEHLRSLIQHIGLTGNIEGIKPEDVAAVIETLHDTYRGWHEAMPRAQRDRILREVFPDVADYKEFRRMKRKQGWPKLAG
Ga0137408_14174931	3300019789	Vadose Zone Soil	MTALEAQWSPVKAIILGEDPQLRIFAEVSVWYKKIELFRKGEDDRMFSQEPTPEDLAVHKSLLQRLIADGQHLIQLIEQVGMPGNIEGITPESARITLEALQADYRGWHQPMPPEHARNY
Ga0194113_1000092138	3300020074	Freshwater Lake	MTAVEEQWSPVKHLILGEDPQVRVYAEVSVWNRKIGLFRKGEEERLFSQDPTPEDLAVHKSLLQRLITDGEHLLSLIRHFGLPENLEGISLESVRATLDLLQADYRGWHDPMAAEQRARFLREVFPDVP
Ga0194113_100973757	3300020074	Freshwater Lake	MTAVEAQWTPVKHVILGDDPQLRLFAEISVWYRKIELFRKGEDQRMFLRDPTPEDLAVHKSLLQRLIADGEHLLSLYRQTGLPENDEGITSESVAATVELLWADYRGWHEPMLVERRSRILSEVFPDVA
Ga0194111_101640653	3300020083	Freshwater Lake	MTAVEAQWTPVKHVILGDDPQLRLFAEISVWYRKIELFRKSEDQRMFLRDPTPEDLAVHKSLLQRLIADGEHLLSLYRQTGLPENDEGITSESVAATVELLWADYRGWHEPMLVERRSRILSEVFPDVA
Ga0194111_103557362	3300020083	Freshwater Lake	MTALEAQWSPVQRLILGDDPQWRLYADVAVWYKKISLFRKHEDERMVIQDPTPEDLTIHKSLLQHLIADGDHLLSLIGQAGLPDNPEEFSAESVAATVELLRADYRGWHEPMPPEQRNRILREVFPDVA
Ga0194112_100958297	3300020109	Freshwater Lake	DAMTAVEAQWTPVKHVILGDDPQLRLFAEISVWYRKIELFRKGEDQRMFLRDPTPEDLAVHKSLLQRLIADGEHLLSLYRQTGLPENDEGITSESVAATVELLWADYRGWHEPMLVERRSRILSEVFPDVA
Ga0194038_10465603	3300020158	Anoxic Zone Freshwater	VQHLILGEDPQLRIYAEVSVWFKKIELFRKGEDERMFLQDPTLEDLAVHKTLLGRLIVDGDHLFSLIQQMGLADNIEGIKSEDVAAIIETLRDTYRGWHELMPAVKREQLLKDVFPDVA
Ga0194039_10442803	3300020163	Anoxic Zone Freshwater	VQHLILGEDPQLRIYAEVSVWFKKIELFRKGEDERMFLQDPTLEDLAVHKTLLGRLIVDGDHLFSLIQQMGLADNIEGIKSEDVAAIIETLRDTYRGWHEPMPAVKREQLLKDVFPDVA
Ga0194120_100403464	3300020198	Freshwater Lake	MTAVEAQWTPVKHVILGDDPQLRLFAEISVWYRKIELFRKGEDQRMFLRDPTPEDLAVHKSLLQRLIADGEHLLSLYRQTGLPENDEGITYESVAATVELLWADYRGWHEPMLVERRSRILSEVFPDVA
Ga0194040_11085441	3300020228	Anoxic Zone Freshwater	LRIYAEVSVWFKKIELFRKGEDERMFLQDPTLEDLAVHKTLLGRLIVDGDHLFSLIQQMGLADNIEGIKSEDVAAIIETLRDTYRGWHELMPAVKREQLLKDVFPDVA
Ga0206225_10363682	3300021064	Deep Subsurface Sediment	MTAVETQWIPAKHLILGDDAQLRVYAETLVWYKKLESFRKSEDERMFVQDTSPEDLAVHKSLLQRLIADGEHLLSLIHQIGLPENNEEITPESVAATVELLGADYRGWHEPMPPEQRTRILREIFPDV
Ga0194056_101537693	3300021070	Anoxic Zone Freshwater	MTAVEAQWSPVQHLILGEDPQLRIYAEVSVWFKKIELFRKGEDERMFLQDPTLEDLAVHKTLLGRLIVDGDHLFSLIQQMGLADNIEGIKSEDVAAIIETLRDTYRGWHEPMPAVKREQLLKDVFPDVA
Ga0210408_100010218	3300021178	Soil	MTAAEAQWSPVQNLILGEDPQSPVYAETPLWLKKIRAFRKVEDERMFLREPTREDLAAHKTLLQRLIADGEYLLPLGAQAGLPENVEGATPESLAATVELLRADYRGWHEPMPPEKRDQMLREVFPDVQ
Ga0194060_101787991	3300021602	Anoxic Zone Freshwater	MTAVEAQWSSVQHLILGEDPQLRIYAEVSVWFKKIELFRKGEDERMFLQEPTPEDLAVHKTLLQRLIADGDHLLSLIQQMGLPENIEGIKPEDVAATIETLRDTYRGWHEPMPAERREQMLREVFPDVVHPDYKEFRRMMRKQE
Ga0224534_10240941	3300022524	Soil	VQHLILGEDPQLRIYAEVSVWFKKIELFRKGEDERMFLQEPTPEDLAVHKTLLQRLIADGDHLLSLIQQMGLPENIEGIKPEDVAATIETLRDTYRGWHEPMPAERREQMLREVFPDVIHYDYKEFRRMKRKQEWPKLRQ
Ga0212088_100114974	3300022555	Freshwater Lake Hypolimnion	MTTLEAQWSPAKLLILGDDPQLRVYAEVSVWYKKIEMFRQGEDQRMFVQEPTSEDLAVHRSLLCRLIVDGEHLIRLIDQVGLPENLEAITPQSVAASLEVICADYRGWHEPMPAAQRERILQQVFTEVA
Ga0224558_10134796	3300023090	Soil	LYVRASGKARVVLHHVQEQVRIGIMTAVEAQWSPLKLLILGEDPQLRLYAEVSVWYKKIEMFRKGEDQRMFVQEPTSEDLAVHRSLLRRLIADGEHLVCLIDQIGLPENVEAITPQSVSATLEAIRADYRGWHEPMPAQLRERILHQVFRDVA
Ga0224559_11573262	3300023091	Soil	MTAVEAQWSPVQHLILGEDPQLRIYAEVSVWFKKIELFRKGEDERMFLQEPTPEDLAVHKTLLQRLIADGDHLLSLIQQMGLPENIEGIKPEDVAATIETLRDTYRGWH
Ga0208102_10359972	3300025447	Freshwater	MTAVEAQWSPVQHLILGEDPQLRIYAEVSVWFKKIELFRKGEDERMFLQDPTLEDLAVHKTLLGRLIVDGDHLFSLIQQMGLADNIEGIKSEDVAAIIETLRDTYRGWHELMPAVKREQLLKDVFPDVA
Ga0208584_10594892	3300025533	Arctic Peat Soil	VTVAWPAGRTKPSPFYFTLPSNAGRPNLSAMTAVETQWIPARHLILGDDPQLRVFAEISLWYKKIELFRKGEDERMFLHDPTPEDLTVHKSLLQRLIADGEHLLSLVRQVGLPESMDGITLESAVATLELLQADYRGWHAPMPAERRQCILQAAFPDVA
Ga0209124_102810881	3300025852	Arctic Peat Soil	LPMTAVEAQWSPVQHLILGEDPQLRIYAEVSVWFKKIELFRKGEDERMFLQEPTPEDLAVHKTLLQRLLADGDHLLSLIQQMGLPENIEGIQSEDVAAAIETLRDTYRGWHEPIPAERREQMLREVFPDVT
Ga0209226_101126513	3300025865	Arctic Peat Soil	VQHLILGEDPQLRIYAEVSVWFKKIELFRKGEDERMFLQEPTPEDLAVHKTLLQRLLADGDHLLSLIQQMGLPENIEGIQSEDVAAAVEALRDTYRGWHEPIPAERREQMLREVFPDVVHPDYKEFRRMKRKQEWPKLRQ
Ga0209226_103401461	3300025865	Arctic Peat Soil	ETQWVPARHLILGDDPQLRVFAEISLWYKKIELFRKGEDERMFLHDPTPEDLTVHKSLLQRLIADGEHLLSLVRQVGLPESMDGITLESAVATLELLQADYRGWHAPMPAERRQCILQAAFPDVA
Ga0209180_105747372	3300027846	Vadose Zone Soil	MTMLEAQWIPAKHLILGDEPQLRLYGEAAVWLKKIELFRKGEDERMFLQEPTPEDLTVHKSLLQRLIADGDHLLSLVSQIGLPQNVEGITSESLAATVELLRSDYRGWHDPMPAEKRRQILREVFPDVA
Ga0209517_1000361913	3300027854	Peatlands Soil	MTGLEAKWGVAKHVILGDEPPLRLFAEAVIWQKKIETFRKGEDERMFMQEPTPEDLAVHKSLLQRLIVDGEHLVSLVAQIGLPENVEGISRGSLAATVEMLRAEYRGWHEPMPSEKREQILRQVFPDVT
Ga0265338_100514923	3300028800	Rhizosphere	MTAVEAQWVPAKHLILGDDPQLRLFGEISVWRNKIELFRKGEDERMFLHDPTPEDLRVHRSLLQRLIADGNYLLSLARQVGVPQNLEGITAESLTATVEMLEADYRGWHQPISPDQRERILHAVFPDVA
Ga0302322_1020004501	3300031902	Fen	FYFTLPSNAGRPNLTAMTAVETQWIPARHLILGDDPQLRVFAEISLWYKKIGLFRKGEDERMFLHDPTPEDLTVHKSLLQRLIADGEHLLSLVRQVGLPESMDEITLESAAATLELLQADYRGWHAPMPAERRQCILQAAFPDVA
Ga0315278_115085432	3300031997	Sediment	MTAVEAQWSPVQHLILGDDPQLRIYAEVSVWFKKIELFRKGEDERMFLQEPTPEDLAVHKTLLQRLIADGDHLLSLIHQMGLPENIEGIKPEDVAATIETLRDTYRGWHEAIPAGKREQVLREVFPEVT
Ga0315274_100718455	3300031999	Sediment	MTTVEAQWRPVKDLILGDDPQLRVYAEVSVWYQKIELFRKGEDARMFLQDPTPEDLAVHRSLLQRLIADGDHLLLLVRQVGLPANGEGIKPEDVVATVETLRDTYRGWHEPMPPEQRTRILKAVFPDVT
Ga0315274_102354644	3300031999	Sediment	MTAVEAQWSPVKHLILGEDPQLRVYAEVAVWLKKIELFRQGEDERMFFQEPTPEDLAVHKALLQRLVADGDHLLSLVRQVGLPANAEGITLESVAATLELLRADYRGWHDSMSAEKRAQILKEVFPDVP
Ga0315276_119469622	3300032177	Sediment	MTAVEAQWSPVKHLILGDDPELRVYAEVAVWLKKIELFRKGEDERMCLQDATTEDLAVHKSLLQRLLADGDHLLSLVRQIGLPANVEGITLESVSATLDLLRADYRGWHEPMPAEKRAQILKEVFPDVP
Ga0315287_113698071	3300032397	Sediment	MTTLEAQWSPAKLLILGDDPQLRVYAEVSVWYQKIEMFRKGEDQRMFVQEPTSEDLAVHRSLLRRLIVDGEHLVRLIDQIGLPENVEAITPLSVAASLEAICADYRGWHEPMPAAKRERILHQVFPDVA
Ga0348332_109053542	3300032515	Plant Litter	EAQWVEAKQQILGDDPQRRVLGDILAWYQKIEVFRKREDQRMVLHDPSAEDLAVHKSLLERLITDGQHLLSLAGQVGLPKNRDDITAESAAATLELLEADYRGWHKPMPEDQRKRIRTAAFPDVA
Ga0315273_119485822	3300032516	Sediment	VQHLILGDDPQLRIYAEVSVWFKKIELFRKGEDERMFLQEPTPEDLAVHKTLLQRLIADGDHLLSLIHQMGLPENIEGIKPEDVAATIETLRDTYRGWHEAIPAGKREQVLREVFPEVT
Ga0335071_115992551	3300032897	Soil	MTTVEAQWSPVQHLILGDDPQLRIYAEVSVWFKKIELFRKEEDERMFLQEPTSEDLAVHKTLLQRLITDGEHLFSLIQQMGLPENLEGMKSADVTATIETLRDTYRGWHEPLRAEQRDQMLREVFPDVT
Ga0326728_1003465610	3300033402	Peat Soil	LVLRTLEAQWSAAKHLILGDDPQLRLFGDAAVWLKKIETFRKGEDERVFVRDPAPEDLAVHKALLQRLIADGEHLLSLVDQIGLPENAEGISRPSLAATLDLLRADYRGWHEPMPPERRAQVLKEIFPDVA
Ga0326724_0434300_116_505	3300034091	Peat Soil	MTTLEAQWSAAKHLILGDDPQLRLFADAAVWLKKIETFRKGEDERMFMGDPAPEDLAVHKALLQRLIADGEHLLSLVDQIGLPENAEGISRPSLAATLDLLRADYRGWHEPMPPERRAQVLKEIFPDVA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters