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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Family ID | F079809 |
| Family Type | Metagenome / Metatranscriptome |
| Number of Sequences | 115 |
| Average Sequence Length | 57 residues |
| Representative Sequence | MLYEELVKELQKEIEGIKNSLAYGTASDYASYRETVGTIAGIEKSIGLIKDYLNKYIEED |
| Number of Associated Samples | 94 |
| Number of Associated Scaffolds | 115 |
| Quality Assessment | |
|---|---|
| Transcriptomic Evidence | Yes |
| Most common taxonomic group | Unclassified |
| % of genes with valid RBS motifs | 66.09 % |
| % of genes near scaffold ends (potentially truncated) | 48.70 % |
| % of genes from short scaffolds (< 2000 bps) | 71.30 % |
| Associated GOLD sequencing projects | 84 |
| AlphaFold2 3D model prediction | Yes |
| 3D model pTM-score | 0.70 |
| Hidden Markov Model |
|---|
| Powered by Skylign |
| Most Common Taxonomy | |
|---|---|
| Group | Unclassified (60.870 % of family members) |
| NCBI Taxonomy ID | N/A |
| Taxonomy | N/A |
| Most Common Ecosystem | |
|---|---|
| GOLD Ecosystem | Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous (26.956 % of family members) |
| Environment Ontology (ENVO) | Unclassified (59.130 % of family members) |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) (79.130 % of family members) |
| ⦗Top⦘ |
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| Predicted Topology & Secondary Structure | |||||
|---|---|---|---|---|---|
| Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 59.09% β-sheet: 0.00% Coil/Unstructured: 40.91% | Feature Viewer |
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| Powered by Feature Viewer | |||||
| Structure Viewer | |
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| Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.70 |
| Powered by PDBe Molstar | |
| SCOP family | SCOP domain | Representative PDB | TM-score |
|---|---|---|---|
| a.118.7.1: 14-3-3 protein | d2o8pa1 | 2o8p | 0.8274 |
| a.7.1.1: Spectrin repeat | d1cuna2 | 1cun | 0.82677 |
| e.32.1.1: Phase 1 flagellin | d1io1a_ | 1io1 | 0.80126 |
| f.25.1.1: Cytochrome c oxidase subunit III-like | d1fftc2 | 1fft | 0.79467 |
| a.24.9.1: alpha-catenin/vinculin | d3rf3a1 | 3rf3 | 0.79355 |
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| Pfam ID | Name | % Frequency in 115 Family Scaffolds |
|---|---|---|
| PF00166 | Cpn10 | 69.57 |
| PF03237 | Terminase_6N | 2.61 |
| PF05019 | Coq4 | 0.87 |
| PF16861 | Carbam_trans_C | 0.87 |
| COG ID | Name | Functional Category | % Frequency in 115 Family Scaffolds |
|---|---|---|---|
| COG0234 | Co-chaperonin GroES (HSP10) | Posttranslational modification, protein turnover, chaperones [O] | 69.57 |
| COG5031 | Ubiquinone biosynthesis protein Coq4 | Coenzyme transport and metabolism [H] | 0.87 |
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| Name | Rank | Taxonomy | Distribution |
| Unclassified | root | N/A | 60.87 % |
| All Organisms | root | All Organisms | 39.13 % |
| Visualization |
|---|
| Powered by ApexCharts |
Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
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| Habitat | Taxonomy | Distribution |
| Aqueous | Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous | 26.96% |
| Seawater | Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater | 7.83% |
| Seawater | Environmental → Aquatic → Marine → Strait → Unclassified → Seawater | 7.83% |
| Marine | Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine | 5.22% |
| Salt Marsh | Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh | 5.22% |
| Marine | Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine | 5.22% |
| Marine | Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine | 3.48% |
| Pond Water | Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water | 3.48% |
| Marine Sediment | Environmental → Aquatic → Marine → Oceanic → Sediment → Marine Sediment | 2.61% |
| Freshwater To Marine Saline Gradient | Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient | 2.61% |
| Estuarine Water | Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water | 2.61% |
| Marine Sediment | Environmental → Aquatic → Marine → Coastal → Sediment → Marine Sediment | 1.74% |
| Estuarine | Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine | 1.74% |
| Pelagic Marine | Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine | 1.74% |
| Marine | Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine | 1.74% |
| Hypersaline Lake Sediment | Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment → Hypersaline Lake Sediment | 1.74% |
| Mangrove Sediment | Environmental → Aquatic → Sediment → Unclassified → Unclassified → Mangrove Sediment | 1.74% |
| Sediment | Environmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment | 0.87% |
| Freshwater Lake | Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake | 0.87% |
| Deep Ocean | Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean | 0.87% |
| Surface Seawater | Environmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater | 0.87% |
| Deep Subsurface | Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface | 0.87% |
| Sediment | Environmental → Aquatic → Marine → Coastal → Sediment → Sediment | 0.87% |
| Microbial Mat | Environmental → Aquatic → Marine → Coastal → Sediment → Microbial Mat | 0.87% |
| Marine | Environmental → Aquatic → Marine → Coastal → Unclassified → Marine | 0.87% |
| Seawater | Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater | 0.87% |
| Sediment, Intertidal | Environmental → Aquatic → Marine → Intertidal Zone → Sediment → Sediment, Intertidal | 0.87% |
| Coastal Lagoon | Environmental → Aquatic → Marine → Unclassified → Unclassified → Coastal Lagoon | 0.87% |
| Marine Water | Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine Water | 0.87% |
| Sediment | Environmental → Aquatic → Marine → Sediment → Unclassified → Sediment | 0.87% |
| Marine Harbor | Environmental → Aquatic → Marine → Harbor → Unclassified → Marine Harbor | 0.87% |
| Water | Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Water | 0.87% |
| Saline Water And Sediment | Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water And Sediment | 0.87% |
| Sediment | Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment | 0.87% |
| Soil | Environmental → Terrestrial → Soil → Clay → Unclassified → Soil | 0.87% |
| Macroalgal Surface | Host-Associated → Algae → Green Algae → Ectosymbionts → Unclassified → Macroalgal Surface | 0.87% |
| Visualization |
|---|
| Powered by ApexCharts |
Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
| Taxon OID | Sample Name | Habitat Type | IMG/M Link |
|---|---|---|---|
| 2222084010 | Coastal lagoon microbial communities from Mar Menor, Spain - Sample 1 | Environmental | Open in IMG/M |
| 3300000116 | Marine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010 | Environmental | Open in IMG/M |
| 3300000973 | Macroalgal surface ecosystem from Botany Bay, Sydney, Australia - BBAY93 | Host-Associated | Open in IMG/M |
| 3300003410 | Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_153SG_22_DNA | Environmental | Open in IMG/M |
| 3300003427 | Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_116LU_22_DNA | Environmental | Open in IMG/M |
| 3300003617 | Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_105LU_22_DNA | Environmental | Open in IMG/M |
| 3300004448 | Marine viral communities from Newfoundland, Canada BC-1 | Environmental | Open in IMG/M |
| 3300004941 | Marine water microbial communities from the Pohang Bay, Korea with extracellular vesicles - Pohang-0.2um | Environmental | Open in IMG/M |
| 3300005590 | Marine sediment microbial communities from the Atlantic coast under amendment with organic carbon and nitrate - tdAd47.2 | Environmental | Open in IMG/M |
| 3300005600 | Marine sediment microbial communities from the Atlantic coast under amendment with organic carbon and nitrate - tdAd47.1 | Environmental | Open in IMG/M |
| 3300005611 | Saline surface water microbial communities from Etoliko Lagoon, Greece | Environmental | Open in IMG/M |
| 3300006802 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18 | Environmental | Open in IMG/M |
| 3300006867 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_N_<0.8_DNA | Environmental | Open in IMG/M |
| 3300006868 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_N_>0.8_DNA | Environmental | Open in IMG/M |
| 3300006869 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_N_>0.8_DNA | Environmental | Open in IMG/M |
| 3300006916 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24 | Environmental | Open in IMG/M |
| 3300007345 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_30 | Environmental | Open in IMG/M |
| 3300007538 | Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_2 Viral MetaG | Environmental | Open in IMG/M |
| 3300007541 | Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG | Environmental | Open in IMG/M |
| 3300007622 | Estuarine microbial communities from the Columbia River estuary - metaG 1449A-02 | Environmental | Open in IMG/M |
| 3300007640 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_28 | Environmental | Open in IMG/M |
| 3300007725 | Water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2A_B_H2O_MG | Environmental | Open in IMG/M |
| 3300008012 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_N_<0.8_DNA | Environmental | Open in IMG/M |
| 3300009001 | Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_C_H2O_MG | Environmental | Open in IMG/M |
| 3300009034 | Intertidal mud flat sediment archaeal communities from Garolim Bay, Chungcheongnam-do, Korea | Environmental | Open in IMG/M |
| 3300009051 | Estuarine microbial communities from the Columbia River estuary - metaG 1449B-02 | Environmental | Open in IMG/M |
| 3300009124 | Marine sediment microbial communities from methane seeps within Hudson Canyon, US Atlantic Margin - Hudson Canyon PC-16 72 cmbsf | Environmental | Open in IMG/M |
| 3300009438 | Pelagic marine microbial communities from North Sea - COGITO_mtgs_110506 | Environmental | Open in IMG/M |
| 3300009505 | Pelagic marine microbial communities from North Sea - COGITO_mtgs_110523 | Environmental | Open in IMG/M |
| 3300009529 | Deep subsurface microbial communities from Black Sea to uncover new lineages of life (NeLLi) - Black_00105 metaG | Environmental | Open in IMG/M |
| 3300009543 | Marine eukaryotic communities from Pacific Ocean to study complex ecological interactions - MBTS_20Mar14_M2_3um Metatranscriptome (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300009605 | Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_M9 | Environmental | Open in IMG/M |
| 3300010300 | Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_27_0.2_DNA | Environmental | Open in IMG/M |
| 3300010368 | Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_15_0.2_DNA | Environmental | Open in IMG/M |
| 3300010412 | Mangrove sediment microbial communities from Mai Po Nature Reserve Marshes in Hong Kong, China - Maipo_10 | Environmental | Open in IMG/M |
| 3300010413 | Mangrove sediment microbial communities from Mai Po Nature Reserve Marshes in Hong Kong, China - Maipo_9 | Environmental | Open in IMG/M |
| 3300012920 | Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St8 metaG | Environmental | Open in IMG/M |
| 3300017708 | Marine viral communities from the Subarctic Pacific Ocean - Lowphox_04 viral metaG | Environmental | Open in IMG/M |
| 3300017748 | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 16 SPOT_SRF_2010-10-21 | Environmental | Open in IMG/M |
| 3300017759 | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 37 SPOT_SRF_2012-11-28 | Environmental | Open in IMG/M |
| 3300017776 | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 17 SPOT_SRF_2010-11-23 | Environmental | Open in IMG/M |
| 3300017782 | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 3 SPOT_SRF_2009-08-19 | Environmental | Open in IMG/M |
| 3300017950 | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041413US metaG (megahit assembly) | Environmental | Open in IMG/M |
| 3300017951 | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101413BT metaG (megahit assembly) | Environmental | Open in IMG/M |
| 3300017963 | Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_3_D_1 metaG | Environmental | Open in IMG/M |
| 3300017967 | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071411BT metaG (megahit assembly) | Environmental | Open in IMG/M |
| 3300018080 | Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_1_D_1 metaG | Environmental | Open in IMG/M |
| 3300018416 | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011502XT metaG (megahit assembly) | Environmental | Open in IMG/M |
| 3300018642 | Metatranscriptome of marine microbial communities from Baltic Sea - GS695_0p1 | Environmental | Open in IMG/M |
| 3300019737 | Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States ? BRT_9-10_MG | Environmental | Open in IMG/M |
| 3300020191 | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041410US metaG (spades assembly) | Environmental | Open in IMG/M |
| 3300020379 | Marine microbial communities from Tara Oceans - TARA_B100000902 (ERX556001-ERR599168) | Environmental | Open in IMG/M |
| 3300020440 | Marine microbial communities from Tara Oceans - TARA_E500000178 (ERX555952-ERR599043) | Environmental | Open in IMG/M |
| 3300020442 | Marine microbial communities from Tara Oceans - TARA_B100002019 (ERX556121-ERR599162) | Environmental | Open in IMG/M |
| 3300021335 | Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO540 | Environmental | Open in IMG/M |
| 3300021347 | Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO266 | Environmental | Open in IMG/M |
| 3300021356 | Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO245 | Environmental | Open in IMG/M |
| 3300021371 | Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO497 | Environmental | Open in IMG/M |
| 3300021378 | Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO131 | Environmental | Open in IMG/M |
| 3300021425 | Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO284 | Environmental | Open in IMG/M |
| 3300021442 | Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 200m 12015 | Environmental | Open in IMG/M |
| 3300021957 | Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18D | Environmental | Open in IMG/M |
| 3300021958 | Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27D | Environmental | Open in IMG/M |
| 3300022061 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12 (v2) | Environmental | Open in IMG/M |
| 3300022065 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24 (v2) | Environmental | Open in IMG/M |
| 3300022066 | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 37 SPOT_SRF_2012-11-28 (v2) | Environmental | Open in IMG/M |
| 3300022071 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01 (v2) | Environmental | Open in IMG/M |
| 3300022074 | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 56 SPOT_SRF_2014-09-10 (v2) | Environmental | Open in IMG/M |
| 3300022198 | Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG (v3) | Environmental | Open in IMG/M |
| 3300022308 | Sediment microbial communities from San Francisco Bay, California, United States - SF_Oct11_sed_USGS_24 | Environmental | Open in IMG/M |
| 3300022925 | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011502XT metaG | Environmental | Open in IMG/M |
| 3300024529 (restricted) | Seawater microbial communities from Strait of Georgia, British Columbia, Canada - BC1_12_21 | Environmental | Open in IMG/M |
| 3300025086 | Marine viral communities from the Subarctic Pacific Ocean - 5_ETSP_OMZ_AT15132 metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300025127 | Marine viral communities from the Pacific Ocean - ETNP_2_30 (SPAdes) | Environmental | Open in IMG/M |
| 3300025617 | Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_153SG_22_DNA (SPAdes) | Environmental | Open in IMG/M |
| 3300025630 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_15_>0.8_DNA (SPAdes) | Environmental | Open in IMG/M |
| 3300025646 | Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG (SPAdes) | Environmental | Open in IMG/M |
| 3300025671 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_4 (SPAdes) | Environmental | Open in IMG/M |
| 3300025687 | Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1D Viral MetaG (SPAdes) | Environmental | Open in IMG/M |
| 3300025695 | Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_116LU_22_DNA (SPAdes) | Environmental | Open in IMG/M |
| 3300025759 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24 (SPAdes) | Environmental | Open in IMG/M |
| 3300025818 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_15_<0.8_DNA (SPAdes) | Environmental | Open in IMG/M |
| 3300025840 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_>0.8_DNA (SPAdes) | Environmental | Open in IMG/M |
| 3300025853 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01 (SPAdes) | Environmental | Open in IMG/M |
| 3300026187 | Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_C_H2O_MG (SPAdes) | Environmental | Open in IMG/M |
| 3300027893 | Marine sediment microbial communities from White Oak River estuary, North Carolina - WOR-1-52-54 (SPAdes) | Environmental | Open in IMG/M |
| 3300027917 | Marine sediment microbial communities from White Oak River estuary, North Carolina - WOR-2-8_12 (SPAdes) | Environmental | Open in IMG/M |
| 3300028131 | Seawater microbial communities from Monterey Bay, California, United States - 53D | Environmental | Open in IMG/M |
| 3300029302 | Marine harbor viral communities from the Indian Ocean - SRB3 | Environmental | Open in IMG/M |
| 3300029319 | Marine viral communities collected during Tara Oceans survey from station TARA_032 - TARA_A100001516 | Environmental | Open in IMG/M |
| 3300029448 | Marine viral communities collected during Tara Oceans survey from station TARA_023 - TARA_E500000082 | Environmental | Open in IMG/M |
| 3300031566 | Soil microbial communities from Risofladan, Vaasa, Finland - UN-1 | Environmental | Open in IMG/M |
| 3300032277 | Microbial mat bacterial communities from mineral coupon in-situ incubated in ocean water Damariscotta River, Maine, United States - 3-month pyrrhotite | Environmental | Open in IMG/M |
| 3300033429 | Coastal sediment microbial communities from Maine, United States - Merrow Island sediment 2 | Environmental | Open in IMG/M |
| Geographical Distribution | |
|---|---|
| Zoom: | Powered by OpenStreetMap |
| ⦗Top⦘ |
Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
| Protein ID | Sample Taxon ID | Habitat | Sequence |
| 2225135879 | 2222084010 | Coastal Lagoon | MLYEELIKQLQKEIDEVKNSLAYGSVSDYPSYREAVGVINGFEISISIIKDITNRYIEED |
| DelMOSpr2010_100323822 | 3300000116 | Marine | VLYEELIKELQKEIEQMKNSLAYGHASDYSMYKEVVGNIAGIERSIGIVKDYLTKYIEED |
| DelMOSpr2010_102230382 | 3300000116 | Marine | ELQKEIEIIKDSLAYGTASDYASYRETVGTIAGIEKSIGLVKDYLNKYIEED* |
| BBAY93_100039966 | 3300000973 | Macroalgal Surface | QKEIEIIKDSLAYGTASDYASYRETVGTIAGIEKSIGLVKDYLNKYIEED* |
| JGI26086J50260_10164382 | 3300003410 | Marine | MLYEELQKELQKEIENIKNSLAYGAASDYPSYRECVGKIAGIETSIGLIKDLLKKYIDEE |
| JGI26084J50262_10007643 | 3300003427 | Marine | MTLHEDLINELQKEIEAVKNSLAYGSVSDYHSYREAVGTIQGLEISIGIVKDITKRYIEED* |
| JGI26082J51739_100154202 | 3300003617 | Marine | MLYEELVKELQKEIENIKNSLAYGNCSDYHSYREAVGRIAGIEISIGLIKDSLSKYIDED |
| Ga0065861_11275163 | 3300004448 | Marine | NIKNSLAYGNCSDYHSYREAVGRIAGIEISIGLIKDSLSKYIDED* |
| Ga0068514_10422042 | 3300004941 | Marine Water | LTLYEDLVIELQKEIDEVKNSLAYGSVSDYPSYREAVGKINGFEISISIIKDTTNRYIEED* |
| Ga0070727_102469422 | 3300005590 | Marine Sediment | LTLYENLVKELQKEIDEVKNSLAYGSVSDYASYREAVGKINGFEISISIIKDTTNRYIEED* |
| Ga0070726_102256671 | 3300005600 | Marine Sediment | MLYEELVKELQKEIENIKNSLAYGNCSDYHSYREAVGRIAGIEISIGLIKDSL |
| Ga0074647_100008121 | 3300005611 | Saline Water And Sediment | VLYEELIKELQKEIEQMKNSLAYGHASDYSMYKEVVGNIAGIERSIGIVKDCLTKYIEED |
| Ga0070749_102361582 | 3300006802 | Aqueous | MLYEELQKELQKEIENIKNSLAYGASSDYASYREQVGRIAGIETSINLIKDYLKKYIE |
| Ga0070749_103080681 | 3300006802 | Aqueous | MLYEELEKELQKEIENIKNGLAYGACSEYASYREQVGRIAGIETSINLIKDYLKKYIEED |
| Ga0075476_102913212 | 3300006867 | Aqueous | QKELQKEIENIKNSLAYGASSDYASYREQVGRIAGIETSINLIKDYLKKYIEEE* |
| Ga0075481_101166133 | 3300006868 | Aqueous | LQKELQKEIENIKNSLAYGASSDYASYREQVGRIAGIETSINLIKDYLKKYIEEE* |
| Ga0075477_103450321 | 3300006869 | Aqueous | YEELQKELQKEIENIKNSLAYGASSDYASYREQVGRIAGIETSINLIKDYLKKYIEEE* |
| Ga0070750_100356372 | 3300006916 | Aqueous | MLYEELQKELQKEIENIKNSLAYGASSDYASYREQVGRIAGIETSINLIKDYL |
| Ga0070750_100877962 | 3300006916 | Aqueous | LTLYENLVKELQKEIDEVKNSLAYGSVSDYPSYREAVGKINGFEISISIIKDTTNRYIEED* |
| Ga0070752_10405943 | 3300007345 | Aqueous | LLYEELQKELQKEIENIKNSLAYGASSDYASYREQVGRIAGIETSINLIKDYLKKYIE |
| Ga0099851_11079031 | 3300007538 | Aqueous | KELQKEIENIKNSLAYGASSDYASYREQVGRIAGIETSINLIKDYLKKYIEEE* |
| Ga0099851_12194452 | 3300007538 | Aqueous | MTLNELLIKELQKEIEAVKNSLAYGGVSDYASYRESVGVIHGIEKSIGTIKEITSKYIEED* |
| Ga0099848_10313624 | 3300007541 | Aqueous | LLYEELQKEIENIKNSLAYGASSDYASYREQVGRIAGIETSINLIKDYLKKYIEEE* |
| Ga0099848_10797172 | 3300007541 | Aqueous | MTLNELLVKELQKEIESIKNSLAYGGVSDYASYRESVGVIHGIEKSIGIIKEITSKYIEED* |
| Ga0099848_11386681 | 3300007541 | Aqueous | KEIESIKNSLAYGGVSDYASYRESVGVIHGIEKSIGTIKEITSKYIEED* |
| Ga0102863_10432631 | 3300007622 | Estuarine | EIEGLKNSLAYGTASDYPMYKEVVGNIAGIEKSIGIIKDYLTKYIEED* |
| Ga0070751_11985792 | 3300007640 | Aqueous | MLYEELQKELQKEIENIKNGLAYGACSEYASYREQVGRIAGIETSINLIKDYLKKYIE |
| Ga0102951_11870412 | 3300007725 | Water | VIYEQIVKELQKEIEIIKDSLAYGTASDYASYRETVGTIAGIEKSIGLVKEYLNKYIEED |
| Ga0075480_101914581 | 3300008012 | Aqueous | MLYEELQKELQKEIENIKNSLAYGASSDYASYREQVGRIAGIETSINLIKD |
| Ga0075480_102513491 | 3300008012 | Aqueous | QKEIENIKNSLAYGNCSDYHSYREAVGRIAGIEISIGLIKDSLSKYIDED* |
| Ga0102963_10072781 | 3300009001 | Pond Water | MLYEELQKELQKEIENIKNSLAYGASSDYASYREQVGRIAGIETSINLIKDYLKKY |
| Ga0102963_10261692 | 3300009001 | Pond Water | VLYEELQKELQKEIENIKNSLAYGASSDYASYREQVGRIAGIETSINLIKDYLKKYIEEE |
| Ga0115863_11008192 | 3300009034 | Sediment, Intertidal | LTLYENLVKELQKEIEEVKNSLAYGSVSDYASYREAVGKINGFEISISIIKDTTNRYIEED* |
| Ga0102864_10261371 | 3300009051 | Estuarine | IKELQKEIEGLKNSLAYGTASDYSMYKEVVGNIAGIEKSIGIIKDYLTKYIEED* |
| Ga0118687_101620952 | 3300009124 | Sediment | MLYEELQKELQKEIENIKNSLAYGASSAYASYREQVGRIAGIETSINLIKDYLKKYIEEE |
| Ga0115559_12223641 | 3300009438 | Pelagic Marine | IKELQKEIEGLKNSLAYGTASDYPMYKEVVGNIAGIEKSIGIIKDYLTKYIEED* |
| Ga0115564_101453193 | 3300009505 | Pelagic Marine | LIKELQKEIEGLKNSLAYGTASDYPMYKEVVGNIAGIEKSIGIIKDYLTKYIEED* |
| Ga0114919_103372342 | 3300009529 | Deep Subsurface | LTLYENLVKELQKEIDEVKNSLAYGSVSDYPSYREAVGVINGFEISISIIKDITNRYIEED* |
| Ga0115099_106416681 | 3300009543 | Marine | KELQKEIEGLKNSLAYGTASDYPMYKEVVGNIAGIEKSIGIIKDYLTKYIEED* |
| Ga0114906_11950822 | 3300009605 | Deep Ocean | LTLYENLVIELQKEIDEVKNSLAYGSVSDYPSYREAVGKINGFEISISIIKDTTNRYIEED* |
| Ga0129351_12550922 | 3300010300 | Freshwater To Marine Saline Gradient | VLYEQLLKELQKEIEIIKNSLAYGTASDYASYRETVGTITGIEKSIGLVKDYLNKYIEED |
| Ga0129351_12635022 | 3300010300 | Freshwater To Marine Saline Gradient | MTLNELLVKELQKEIESIKNSLAYGGVSDYASYRESVGVIHGIEKSIGTIKEITSKYIEENNMQDLVMSDGLEIT* |
| Ga0129324_103735502 | 3300010368 | Freshwater To Marine Saline Gradient | MLYEELQKELQKEIENIKNSLAYGASSDYASYRENVGRIAGIETSINLIKEYLKKYIDEE |
| Ga0136852_114125801 | 3300010412 | Mangrove Sediment | LQKEIEIIKDSLAYGTASDYASYRETVGTIAGIEKSIGLVKDHLNKYIEED* |
| Ga0136851_110082162 | 3300010413 | Mangrove Sediment | VLYEELVRELQKEIEIIKNSLAYGTASDYASYRETVGTITGIEKSIGLVKDYLNKYIEED |
| Ga0160423_101029992 | 3300012920 | Surface Seawater | LTLYENLVIELQKEIDEVKNSLAYGSVSDYASYREAVGKINGFEISISIIKDTTNRYIEED* |
| Ga0181369_10338372 | 3300017708 | Marine | LTLYENLVIELQKEIDEVKNSLAYGGVSDYASYREAVGKINGFEISISIIKDTTNRYIEE |
| Ga0181393_11211742 | 3300017748 | Seawater | VLYEELIKEIQKEIESIKNSLAYGAASDYSRYCESVGTIAGLEKAIGLIKDYLNK |
| Ga0181414_10019992 | 3300017759 | Seawater | VLYEELIKEIQKEIESIKNSLAYGASSDYSRYCESVGTIAGLEKAIGLIKDYLNKYIEEE |
| Ga0181394_10647961 | 3300017776 | Seawater | LIKEIQKEIESIKNSLAYGAASDYSRYCESVGTIAGLEKAIGLIKDYLNKYIEEE |
| Ga0181380_12687542 | 3300017782 | Seawater | LTLYENLVKELQKEIDEVKNSLAYGSVSDYPSYREAVGKINGFEISISIIKDTTNRY |
| Ga0181380_12696871 | 3300017782 | Seawater | KELQKEIEGLKNSLAYGTASDYPMYKEVVGNIAGIEKSIGIIKDYLTKYIEED |
| Ga0181607_101621052 | 3300017950 | Salt Marsh | VLYEQLLKELQKEIEIIKDSLAYGTASDYASYRETVGTIAGIEKSIGLVKDYLNKYIEED |
| Ga0181577_104514492 | 3300017951 | Salt Marsh | MLYEELIKEIQKEIESIKNSLAYGAASDYSRYCESVGTIAGLEKAIGLIKDYLNKYIEEE |
| Ga0180437_100228324 | 3300017963 | Hypersaline Lake Sediment | LTLYENLVKELQKEIDEVKNSLAYGSVSDYPSYREAVGVINGFEISISIIKDITNRYIEE |
| Ga0181590_100196795 | 3300017967 | Salt Marsh | VLYEELVKEIQKEIESIKNSLAYGAASDYSRYCESVGTIAGLEKAVGLIKDYLNKYIEEE |
| Ga0180433_101063053 | 3300018080 | Hypersaline Lake Sediment | LTLYENLVKELQKEIEEVKNSLAYGSVSDYASYREAVGKINGFEISISIIKDTTNRYIEE |
| Ga0181553_100553503 | 3300018416 | Salt Marsh | MLYEELIKEIQKEIESIKNSLAYGAASDYSRYCESVGTIAGLEKAVGLIKDYLNKYIEEE |
| Ga0188867_10021981 | 3300018642 | Freshwater Lake | EIEGLKNSLAYGTASDYPMYKEVVGNIAGIEKSIGIIKDYLTKYIEED |
| Ga0193973_10190682 | 3300019737 | Sediment | MLYEELQKELQKEIENIKNSLAYGASSDYASYREQVGRIAGIETSINLIKDYLK |
| Ga0181604_103318392 | 3300020191 | Salt Marsh | VIYEQIVKELQKEIEIIKDSLAYGTASDYASYRETVGTIAGIEKSIGLVKDYLNKYIEED |
| Ga0211652_102782422 | 3300020379 | Marine | LTLYEDLVIELQKEIDEVKNSLAYGSVSDYASYREAVGKINGFEISISIIKDTTNRYIEE |
| Ga0211518_100197572 | 3300020440 | Marine | LTLYENLVIELQKEIDEVKNSLAYGSVSDYPSYREAVGKINGFEISISIIKDITNRYIEE |
| Ga0211559_100112492 | 3300020442 | Marine | MTLYENLVIELQKEIDEVKNSLAYGGVSDYPSYREAVGKINGFEISISIIKDTTNRYIEE |
| Ga0213867_100210813 | 3300021335 | Seawater | VLYEELVKDIQKEIESIKNSLAYGAASDYSRYCESVGTIAGLEKAVGLIKDYLNKYIEEE |
| Ga0213867_10772782 | 3300021335 | Seawater | VLYEELVKDIQKEIESIKNSLAYGAASDYSRYCESVGTIAGLEKAIGLIKDYLNKYIEEE |
| Ga0213862_100083816 | 3300021347 | Seawater | MLYEELVKELQKEIEGIKNSLAYGTASDYASYRETVGTIAGIEKSIGLIKDYLNKYIEED |
| Ga0213858_101233491 | 3300021356 | Seawater | MLYEELVKELEKEIESIKNSLAYGAASDYSSYCESVGHIAGLQKSIGIIKDYLN |
| Ga0213863_100487092 | 3300021371 | Seawater | VLYDELVRELQKEIEIIKNSLAYGTASDYASYRETVGTITGIEKSIGLVKDYLNKYIEED |
| Ga0213861_103008321 | 3300021378 | Seawater | VLYEQLLKELQKEIEIIKDSLAYGTASDYASYRETVGTIAGIEKSIGLVKD |
| Ga0213861_104893072 | 3300021378 | Seawater | QIVKELQKEIEIIKDSLAYGTASDYASYRETVGTIAGIEKSIGLVKDYLNKYIEED |
| Ga0213866_102595793 | 3300021425 | Seawater | KEIESIKNSLAYGAASDYSRYCESVGTIAGLEKAIGLIKDYLNKYIEEE |
| Ga0206685_103208541 | 3300021442 | Seawater | IKELQKEIEGLKNSLAYGTASDYPMYKEVVGNIAGIEKSIGIIKDYLTKYIEED |
| Ga0222717_100780742 | 3300021957 | Estuarine Water | MLYEELVKELQKEIEVIKNSLAYGTASDYASYRETVGTIAGIEKSIGLIKDYLNKYIEED |
| Ga0222717_101051582 | 3300021957 | Estuarine Water | MLYEELQKELQKEIENIKNSLAYGASSDYASYREQVGRIAGIETSINLIKDYLKKYIEEE |
| Ga0222718_101839022 | 3300021958 | Estuarine Water | LTLYENLVKELQKEIEEVKNSLAYGSVSDYPSYREAVGKINGFEISISIIKDTTNRYIEE |
| Ga0212023_10194653 | 3300022061 | Aqueous | KELQKEIENIKNSLAYGNCSDYHSYREAVGRIAGIEISIGLIKDSLSKYIDED |
| Ga0212024_11044771 | 3300022065 | Aqueous | CSSDLGKELMLYEELQKELQKEIENIKNSLAYGASSDYASYREQVGRIAGIETSINLIKDYLKKYIEEE |
| Ga0224902_1006193 | 3300022066 | Seawater | VLYEELIKEIQKEIESIKNSLAYGAASDYSRYCESVGTIAGLEKAIGLIKDYLNKYIEEE |
| Ga0212028_10655201 | 3300022071 | Aqueous | LLYEELQKELQKEIENIKNSLAYGASSDYASYREQVGRIAGIETSINLIKDYLKKYIEEE |
| Ga0224906_10006346 | 3300022074 | Seawater | LTLYENLVKELQKEIDEVKNSLAYGSVSDYPSYREAVGKINGFEISISIIKDTTNRYIEE |
| Ga0224906_11287081 | 3300022074 | Seawater | VLYEEIAKELQKEIENIKNSLAYGASSDYHSYRESVGRIAGIEISINIIKDFVNKYIEED |
| Ga0196905_10463362 | 3300022198 | Aqueous | MTLNELLVKELQKEIESIKNSLAYGGVSDYASYRESVGVIHGIEKSIGTIKEITSKYIEE |
| Ga0196905_11328612 | 3300022198 | Aqueous | QKEIEAVKNSLAYGGVSDYASYRESVGVIHGIEKSIGIIKEITSKYIEED |
| Ga0224504_100106932 | 3300022308 | Sediment | VLYEELIKELQKEIEQMKNSLAYGHASDYSMYKEVVGNIAGIERSIGIIKDYLTKYIEED |
| Ga0255773_103584471 | 3300022925 | Salt Marsh | EIQKEIESIKNSLAYGAASDYSRYCESVGTIAGLEKAVGLIKDYLNKYIEEE |
| (restricted) Ga0255044_105188001 | 3300024529 | Seawater | EELVKDIQKEIESIKNSLAYGAASDYSRYCESVGTIAGLEKAIGLIKDYLNKYIEEE |
| Ga0208157_10595242 | 3300025086 | Marine | MLYEEIAKELQKEIENIKNSLAYGASSDYHSYRESVGRIAGIEISINIIKDFVNKYIEED |
| Ga0209348_10398624 | 3300025127 | Marine | VLYEEIAKELQKEIENIKNSLAYGGSSDYHSYRESVGRIAGIETSINIIKDFVNKYIEED |
| Ga0209348_10543612 | 3300025127 | Marine | MLYEEIAKELQKEIENIKNSLAYGGSSDYHSYRESVGRIAGIETSINLIKDFVNKYIEED |
| Ga0209138_10989961 | 3300025617 | Marine | YDELQKELQKEIENIKNSLAYGAASDYPSYRECVGKIAGIETSIGLIKDLLKKYIDEE |
| Ga0208004_11508512 | 3300025630 | Aqueous | ELVKELQKEIENIKNSLAYGNCSDYHSYREAVGRIAGIEISIGLIKDSLSKYIDED |
| Ga0208161_10564832 | 3300025646 | Aqueous | MTLNELLVKELQKEIESIKNSLAYGGVSDYASYRESVGVIHGIEKSIGIIKEITSKYIEE |
| Ga0208161_11028533 | 3300025646 | Aqueous | LEKELQKEIENIKNGLAYGACSEYASYREQVGRIAGIETSINLIKDYLKKYIEEE |
| Ga0208898_10573692 | 3300025671 | Aqueous | MLYEELQKELQKEIENIKNSLAYGASSDYASYREQVGRIAGIETSINLIK |
| Ga0208019_10766071 | 3300025687 | Aqueous | EIENLKNSLAYGASSDYASYREQVGRIAGIETSINLIKDYLKKYIEEE |
| Ga0209653_10017663 | 3300025695 | Marine | MTLHEDLINELQKEIEAVKNSLAYGSVSDYHSYREAVGTIQGLEISIGIVKDITKRYIEE |
| Ga0209653_11276951 | 3300025695 | Marine | LVNELLKEIEGIKNSLAYGSVSDYHSYREAVGTIQGLELSIGIIKDITKRYIEEE |
| Ga0208899_11731191 | 3300025759 | Aqueous | VKELQKEIDEVKNSLAYGSVSDYASYREAVGKINGFEISISIIKDTTNRYIEED |
| Ga0208542_10810561 | 3300025818 | Aqueous | EELVKELQKEIENIKNSLAYGNCSDYHSYREAVGRIAGIEISIGLIKDSLSKYIDED |
| Ga0208542_11449632 | 3300025818 | Aqueous | YLMLYEELQKELQKEIENIKNSLAYGASSDYASYREQVGRIAGIETSINLIKDYLKKYIEEE |
| Ga0208917_10170313 | 3300025840 | Aqueous | LLYEELQKELQKEIENIKNSLAYGASSDYASYREQVGRIAGIETSINLIKDYLKK |
| Ga0208645_10915212 | 3300025853 | Aqueous | LTLYENLVKELQKEIDEVKNSLAYGSVSDYASYREAVGKINGFEISISIIKDTTNRYI |
| Ga0209929_10924252 | 3300026187 | Pond Water | MLYEELQKELQKEIENIKNSLAYGASSDYASYREQVGRIAGIETSINLIKDYLKKYIEE |
| Ga0209929_11233181 | 3300026187 | Pond Water | QKELQKEIENIKNSLAYGASSDYASYREQVGRIAGIETSINLIKDYLKKYIEEE |
| Ga0209636_112756822 | 3300027893 | Marine Sediment | MLYEELVKELEKEIESVKNSLAYGAASDYSSYCESVGHIAGLQKSIGIIKDY |
| Ga0209536_1006043981 | 3300027917 | Marine Sediment | LLKELQKEIEIIKDSLAYGTASDYASYRETVGTIAGIEKSIGLVKDYLNKYIEED |
| Ga0209536_1006948453 | 3300027917 | Marine Sediment | ELQKEIENIKNSLAYGASSDYASYREQVGRIAGIETSINLIKDYLKKYIEEE |
| Ga0228642_10329142 | 3300028131 | Seawater | MLYEELVKELQKEIELIKNSLAYGTASDYASYRETVGTIAGIEKSIGLIKDYLNKYIEED |
| Ga0135227_10382621 | 3300029302 | Marine Harbor | MLYEELVKELEKEIESIKNSLAYGAASDYPSYRETVGTVAGIEKSIGLVKDFLNKYIEED |
| Ga0183748_10138636 | 3300029319 | Marine | MLYEEIAKELQKEIENIKNSLAYGGSSDYHSYRESVGRIAGIETSINIIKDFVNKYIEED |
| Ga0183755_10067538 | 3300029448 | Marine | LTLYENLVIELQKEIDEVKNSLAYGSVSDYPSYREAVGKINGFEISISIIKDTTNRYIEE |
| Ga0307378_101517801 | 3300031566 | Soil | VLYEQLLKELQKEIEIIKDSLAYGTASDYASYRETVGTIAGIEKSIGLVKDYLNKYIE |
| Ga0316202_102053851 | 3300032277 | Microbial Mat | VTLYENLVKELQKEIDEVKNSLAYGSVSDYASYREAVGKINGFEISISIIKDTTNRYIEE |
| Ga0316193_115863451 | 3300033429 | Sediment | VLYEELIKELQKEIEQMKNSLAYGHASDYSMYKEVVGNIAGIERSIGIVKDYLTKYIE |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |