Metagenome / Metatranscriptome Family F079757

Basic Information
Family ID	F079757
Family Type	Metagenome / Metatranscriptome
Number of Sequences	115
Average Sequence Length	53 residues
Representative Sequence	PVARIAERANIGRAKARAAIRLAEGLGLIAIEETPDRKRVIVNRGVTSRC
Number of Associated Samples	97
Number of Associated Scaffolds	115

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	3.48 %
% of genes near scaffold ends (potentially truncated)	87.83 %
% of genes from short scaffolds (< 2000 bps)	93.91 %
Associated GOLD sequencing projects	94
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.60

Most Common Taxonomy
Group	Unclassified (70.435 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (25.217 % of family members)
Environment Ontology (ENVO)	Unclassified (26.957 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (49.565 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 30.77% β-sheet: 12.82% Coil/Unstructured: 56.41%
Feature Viewer

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Pfam ID	Name	% Frequency in 115 Family Scaffolds
PF03401	TctC	1.74
PF04392	ABC_sub_bind	1.74
PF02371	Transposase_20	1.74
PF13751	DDE_Tnp_1_6	1.74
PF13467	RHH_4	0.87
PF13670	PepSY_2	0.87
PF08379	Bact_transglu_N	0.87
PF00248	Aldo_ket_red	0.87
PF07813	LTXXQ	0.87
PF04909	Amidohydro_2	0.87
PF13557	Phenol_MetA_deg	0.87
PF00126	HTH_1	0.87
PF05598	DUF772	0.87
PF01471	PG_binding_1	0.87
PF13683	rve_3	0.87
PF09361	Phasin_2	0.87

COG ID	Name	Functional Category	% Frequency in 115 Family Scaffolds
COG3678	Periplasmic chaperone Spy, Spy/CpxP family	Posttranslational modification, protein turnover, chaperones [O]	3.48
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	1.74
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	1.74
COG3547	Transposase	Mobilome: prophages, transposons [X]	1.74
COG1305	Transglutaminase-like enzyme, putative cysteine protease	Posttranslational modification, protein turnover, chaperones [O]	0.87

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.43 %
All Organisms	root	All Organisms	29.57 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.43 %
cellular organisms	root	All Organisms → cellular organisms	29.57 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.43 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	29.57 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.43 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	26.09 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → environmental samples	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.43 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	22.61 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.43 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	10.43 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	5.22 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.43 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	5.22 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	3.48 %
Methylobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	2.61 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.43 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	5.22 %
Methylobacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium	2.61 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2.61 %
Nitrobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Nitrobacter	0.87 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.43 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	5.22 %
unclassified Methylobacterium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium → unclassified Methylobacterium	2.61 %
Nitrobacter winogradskyi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Nitrobacter → Nitrobacter winogradskyi	0.87 %
Bradyrhizobium lablabi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	0.87 %
Bradyrhizobium diazoefficiens	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium diazoefficiens	0.87 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.43 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	5.22 %
Methylobacterium sp. UNCCL125	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium → unclassified Methylobacterium → Methylobacterium sp. UNCCL125	1.74 %
Methylobacterium sp. GXF4	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium → unclassified Methylobacterium → Methylobacterium sp. GXF4	0.87 %
Nitrobacter winogradskyi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Nitrobacter → Nitrobacter winogradskyi	0.87 %
Bradyrhizobium lablabi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	0.87 %
Bradyrhizobium diazoefficiens	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium diazoefficiens	0.87 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.87 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2189573000\|GPBTN7E02HPPFO	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	506	Open in IMG/M
3300000550\|F24TB_12273825	Not Available	586	Open in IMG/M
3300000789\|JGI1027J11758_13020856	Not Available	837	Open in IMG/M
3300002568\|C688J35102_118345226	Not Available	551	Open in IMG/M
3300004114\|Ga0062593_103027768	Not Available	538	Open in IMG/M
3300005093\|Ga0062594_103012158	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium → unclassified Methylobacterium → Methylobacterium sp. GXF4	526	Open in IMG/M
3300005164\|Ga0066815_10051470	Not Available	680	Open in IMG/M
3300005328\|Ga0070676_11182792	Not Available	580	Open in IMG/M
3300005356\|Ga0070674_101221292	Not Available	668	Open in IMG/M
3300005367\|Ga0070667_100065460	Not Available	3086	Open in IMG/M
3300005367\|Ga0070667_100241303	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1613	Open in IMG/M
3300005543\|Ga0070672_101417973	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium → unclassified Methylobacterium → Methylobacterium sp. UNCCL125	621	Open in IMG/M
3300005713\|Ga0066905_100294148	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1271	Open in IMG/M
3300005713\|Ga0066905_101742150	All Organisms → cellular organisms → Bacteria → Proteobacteria	573	Open in IMG/M
3300005718\|Ga0068866_11171744	Not Available	554	Open in IMG/M
3300005719\|Ga0068861_101628956	Not Available	636	Open in IMG/M
3300005764\|Ga0066903_103668691	Not Available	826	Open in IMG/M
3300005764\|Ga0066903_107138705	Not Available	578	Open in IMG/M
3300005840\|Ga0068870_11203807	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	548	Open in IMG/M
3300005937\|Ga0081455_10034544	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4529	Open in IMG/M
3300005937\|Ga0081455_10054501	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3408	Open in IMG/M
3300006028\|Ga0070717_10567035	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium → unclassified Methylobacterium → Methylobacterium sp. UNCCL125	1029	Open in IMG/M
3300006038\|Ga0075365_10608520	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	773	Open in IMG/M
3300006051\|Ga0075364_11035446	Not Available	558	Open in IMG/M
3300006051\|Ga0075364_11131644	Not Available	531	Open in IMG/M
3300006057\|Ga0075026_100797104	Not Available	572	Open in IMG/M
3300006844\|Ga0075428_100652041	Not Available	1123	Open in IMG/M
3300006846\|Ga0075430_100467060	Not Available	1041	Open in IMG/M
3300006846\|Ga0075430_101732617	Not Available	513	Open in IMG/M
3300006969\|Ga0075419_10440403	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	898	Open in IMG/M
3300009092\|Ga0105250_10374353	Not Available	627	Open in IMG/M
3300009094\|Ga0111539_11184232	Not Available	888	Open in IMG/M
3300009094\|Ga0111539_11854311	Not Available	699	Open in IMG/M
3300009100\|Ga0075418_11667789	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	693	Open in IMG/M
3300009100\|Ga0075418_12395097	Not Available	576	Open in IMG/M
3300009147\|Ga0114129_11397661	Not Available	864	Open in IMG/M
3300009147\|Ga0114129_11955753	Not Available	710	Open in IMG/M
3300009148\|Ga0105243_11500515	Not Available	698	Open in IMG/M
3300009148\|Ga0105243_12106474	Not Available	600	Open in IMG/M
3300009553\|Ga0105249_10627909	Not Available	1131	Open in IMG/M
3300009840\|Ga0126313_10107724	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2058	Open in IMG/M
3300010159\|Ga0099796_10435383	Not Available	581	Open in IMG/M
3300010359\|Ga0126376_13232490	Not Available	504	Open in IMG/M
3300010362\|Ga0126377_11367426	Not Available	781	Open in IMG/M
3300010366\|Ga0126379_11338547	Not Available	822	Open in IMG/M
3300010398\|Ga0126383_13198014	Not Available	535	Open in IMG/M
3300011119\|Ga0105246_10393165	Not Available	1149	Open in IMG/M
3300011119\|Ga0105246_11675742	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	603	Open in IMG/M
3300012211\|Ga0137377_10463831	All Organisms → cellular organisms → Bacteria	1205	Open in IMG/M
3300012212\|Ga0150985_119012550	Not Available	584	Open in IMG/M
3300012212\|Ga0150985_119104444	Not Available	517	Open in IMG/M
3300012356\|Ga0137371_11085288	Not Available	603	Open in IMG/M
3300012469\|Ga0150984_118517867	Not Available	802	Open in IMG/M
3300012487\|Ga0157321_1018691	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Nitrobacter → Nitrobacter winogradskyi	616	Open in IMG/M
3300012685\|Ga0137397_10938023	Not Available	640	Open in IMG/M
3300012948\|Ga0126375_11510571	Not Available	574	Open in IMG/M
3300012951\|Ga0164300_10235231	All Organisms → cellular organisms → Bacteria → Proteobacteria	920	Open in IMG/M
3300012958\|Ga0164299_10991241	Not Available	618	Open in IMG/M
3300012960\|Ga0164301_10220521	All Organisms → cellular organisms → Bacteria → Proteobacteria	1224	Open in IMG/M
3300012984\|Ga0164309_11013502	Not Available	685	Open in IMG/M
3300012987\|Ga0164307_10019060	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3514	Open in IMG/M
3300012988\|Ga0164306_11347566	Not Available	605	Open in IMG/M
3300012989\|Ga0164305_11998755	Not Available	529	Open in IMG/M
3300014325\|Ga0163163_12939935	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	532	Open in IMG/M
3300015077\|Ga0173483_10503403	Not Available	646	Open in IMG/M
3300015242\|Ga0137412_10184168	Not Available	1674	Open in IMG/M
3300015371\|Ga0132258_11490993	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1708	Open in IMG/M
3300015372\|Ga0132256_100073364	Not Available	3251	Open in IMG/M
3300015372\|Ga0132256_103670156	Not Available	516	Open in IMG/M
3300015373\|Ga0132257_102676195	Not Available	649	Open in IMG/M
3300015374\|Ga0132255_100160927	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	3141	Open in IMG/M
3300015374\|Ga0132255_100518946	Not Available	1753	Open in IMG/M
3300015374\|Ga0132255_104160122	Not Available	614	Open in IMG/M
3300017997\|Ga0184610_1046352	Not Available	1273	Open in IMG/M
3300018054\|Ga0184621_10287039	Not Available	581	Open in IMG/M
3300018067\|Ga0184611_1137084	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	863	Open in IMG/M
3300018073\|Ga0184624_10195180	All Organisms → cellular organisms → Bacteria	902	Open in IMG/M
3300018073\|Ga0184624_10305300	Not Available	713	Open in IMG/M
3300018074\|Ga0184640_10449779	Not Available	573	Open in IMG/M
3300018469\|Ga0190270_11237576	Not Available	786	Open in IMG/M
3300018469\|Ga0190270_12020548	Not Available	635	Open in IMG/M
3300018476\|Ga0190274_11515266	All Organisms → cellular organisms → Bacteria	762	Open in IMG/M
3300019255\|Ga0184643_1450920	Not Available	632	Open in IMG/M
3300020001\|Ga0193731_1161858	Not Available	542	Open in IMG/M
3300020002\|Ga0193730_1059242	Not Available	1099	Open in IMG/M
3300021080\|Ga0210382_10251462	Not Available	773	Open in IMG/M
3300022694\|Ga0222623_10217814	Not Available	739	Open in IMG/M
3300025906\|Ga0207699_11342327	Not Available	529	Open in IMG/M
3300025934\|Ga0207686_10928716	Not Available	703	Open in IMG/M
3300025937\|Ga0207669_10369505	Not Available	1114	Open in IMG/M
3300025986\|Ga0207658_10703922	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium diazoefficiens	913	Open in IMG/M
3300026075\|Ga0207708_10998221	Not Available	727	Open in IMG/M
3300027909\|Ga0209382_10548083	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1267	Open in IMG/M
3300028381\|Ga0268264_10217986	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	1755	Open in IMG/M
3300028587\|Ga0247828_10648518	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	650	Open in IMG/M
3300028707\|Ga0307291_1205109	Not Available	509	Open in IMG/M
3300028711\|Ga0307293_10179234	Not Available	674	Open in IMG/M
3300028715\|Ga0307313_10269647	All Organisms → cellular organisms → Bacteria → Proteobacteria	529	Open in IMG/M
3300028719\|Ga0307301_10200266	Not Available	648	Open in IMG/M
3300028778\|Ga0307288_10310506	Not Available	629	Open in IMG/M
3300028793\|Ga0307299_10072883	Not Available	1274	Open in IMG/M
3300028802\|Ga0307503_10260158	Not Available	852	Open in IMG/M
3300028810\|Ga0307294_10376076	Not Available	530	Open in IMG/M
3300028828\|Ga0307312_10681070	Not Available	681	Open in IMG/M
3300028876\|Ga0307286_10036855	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1629	Open in IMG/M
3300028876\|Ga0307286_10297641	Not Available	596	Open in IMG/M
3300028880\|Ga0307300_10193858	Not Available	656	Open in IMG/M
3300028884\|Ga0307308_10487039	Not Available	592	Open in IMG/M
3300030829\|Ga0308203_1007445	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1188	Open in IMG/M
3300031170\|Ga0307498_10183186	Not Available	719	Open in IMG/M
3300031226\|Ga0307497_10053994	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1421	Open in IMG/M
3300031544\|Ga0318534_10521661	Not Available	678	Open in IMG/M
3300031947\|Ga0310909_10403245	Not Available	1148	Open in IMG/M
3300032013\|Ga0310906_11424078	Not Available	509	Open in IMG/M
3300032091\|Ga0318577_10375965	Not Available	679	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	60.00%
Host-Associated	Host-Associated	40.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	51.30%
Plants	Host-Associated → Plants	40.00%
Aquatic	Environmental → Aquatic	8.70%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	51.30%
Rhizosphere	Host-Associated → Plants → Rhizosphere	24.35%
Rhizoplane	Host-Associated → Plants → Rhizoplane	12.17%
Sediment	Environmental → Aquatic → Sediment	6.96%
Roots	Host-Associated → Plants → Roots	3.48%
Freshwater	Environmental → Aquatic → Freshwater	1.74%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	43.48%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	15.65%
Soil	Host-Associated → Plants → Rhizosphere → Soil	8.70%
Loam	Environmental → Terrestrial → Soil → Loam	7.83%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	6.96%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	6.09%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	6.09%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	2.61%
Sediment	Environmental → Aquatic → Freshwater → Sediment	1.74%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.87%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	35.65%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	15.65%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	8.70%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	6.96%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	6.09%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	6.09%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	3.48%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	2.61%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.61%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	2.61%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	1.74%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.74%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.74%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.74%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.74%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.87%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	25.22%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	9.57%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	5.22%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	4.35%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	4.35%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	4.35%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	4.35%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	3.48%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	3.48%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.61%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.61%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	2.61%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	2.61%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	1.74%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.74%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.74%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.74%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	1.74%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	1.74%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.74%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.74%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.74%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	1.74%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.87%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.87%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.87%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.87%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.87%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	0.87%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	0.87%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.87%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.87%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2189573000	Grass soil microbial communities from Rothamsted Park, UK - July 2010 direct MP BIO 1O1 lysis 0-21cm (T0 for microcosms)	Environmental	Open in IMG/M
3300000550	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU amended with acetate total DNA F2.4 TB clc assemly	Environmental	Open in IMG/M
3300000789	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005164	Soil and rhizosphere microbial communities from Laval, Canada - mgLAC	Environmental	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005367	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG	Host-Associated	Open in IMG/M
3300005543	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG	Host-Associated	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005718	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2	Host-Associated	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005840	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2	Host-Associated	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006038	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5	Host-Associated	Open in IMG/M
3300006051	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4	Host-Associated	Open in IMG/M
3300006057	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2012	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006846	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4	Host-Associated	Open in IMG/M
3300006969	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3	Host-Associated	Open in IMG/M
3300009092	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG	Host-Associated	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010159	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012487	Arabidopsis rhizosphere microbial communities from North Carolina - M.Cvi.4.old.130510	Host-Associated	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300015077	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2 (version 2)	Environmental	Open in IMG/M
3300015242	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017997	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_coex	Environmental	Open in IMG/M
3300018054	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_b1	Environmental	Open in IMG/M
3300018067	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_coex	Environmental	Open in IMG/M
3300018073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_b1	Environmental	Open in IMG/M
3300018074	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b2	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300019255	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300020001	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1a2	Environmental	Open in IMG/M
3300020002	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1a1	Environmental	Open in IMG/M
3300021080	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_coex redo	Environmental	Open in IMG/M
3300022694	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_coex	Environmental	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025934	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025937	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025986	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026075	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028587	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day3	Environmental	Open in IMG/M
3300028707	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_148	Environmental	Open in IMG/M
3300028711	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_150	Environmental	Open in IMG/M
3300028715	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_203	Environmental	Open in IMG/M
3300028719	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_182	Environmental	Open in IMG/M
3300028778	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_142	Environmental	Open in IMG/M
3300028793	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_159	Environmental	Open in IMG/M
3300028802	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 17_S	Environmental	Open in IMG/M
3300028810	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_151	Environmental	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300028876	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_140	Environmental	Open in IMG/M
3300028880	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_181	Environmental	Open in IMG/M
3300028884	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_195	Environmental	Open in IMG/M
3300030829	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_357 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031170	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 12_S	Environmental	Open in IMG/M
3300031226	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_S	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300032013	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3	Environmental	Open in IMG/M
3300032091	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f25	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
N55_10396240	2189573000	Grass Soil	NTDAMAVLAVIRNEAATTGKCTLSVARIAERANVGRTKVRAAIRLAERLEIIAIEVAPDRRRVIINRCVTSRC
F24TB_122738251	3300000550	Soil	TGKCTLPVARIAERANIGRAKVRAAIKLAESLGIIAIEETPPGGKRVIINRGITSRC*
JGI1027J11758_130208563	3300000789	Soil	AVLAVIRDEAKATGKCTLPVAHIAERANIGRATITLAEGLGLIAIEEAPDRKRVIINRGVKSRC*
C688J35102_1183452261	3300002568	Soil	MDALAVLAVIRNEAQTTGKCTLPVAQIAERANIGRAKTRAAIRLAVSLGLIAIEKTPDRKRVIINRGVTSRC*
Ga0062593_1030277682	3300004114	Soil	EAQASGKCSLPVARIAERANIGRAKARAAIRLAEGLGLIAIEETPDRKRVIVNRGVTSRC
Ga0062594_1030121581	3300005093	Soil	VLAVIRNEAQASGKCSLPVARIAERANIGRAKTRAAIRLAEKLGLITIEETPDQKRVILNRGITSRC*
Ga0066815_100514702	3300005164	Soil	VIRNEAQASGKCSLPVARIAERANIGRAKARAAIRLAEGLGLIAIEETPDRKRVIVNRGVTSRC*
Ga0070676_111827922	3300005328	Miscanthus Rhizosphere	RANIGRAKARAAIRLAEGLGLIAIEETPDRKRVIVNRGVTSRC*
Ga0070674_1012212922	3300005356	Miscanthus Rhizosphere	AERANIGRAKVRAAIRLAESLGLIAIEETPDRKRVIVNRGVMSRC*
Ga0070667_1000654608	3300005367	Switchgrass Rhizosphere	NIGRAKARAAIRLAEGLGLIAIEETPDRKRVIVNRGVTSRC*
Ga0070667_1002413032	3300005367	Switchgrass Rhizosphere	IAERANVGRAKVRAAIKLAERLEIIAIEIAPDRRRVIINRCVTSRC*
Ga0070672_1014179731	3300005543	Miscanthus Rhizosphere	CSLPVARIAERANIGRAKARAAIRLAEGLGLIAIEETPDRKRVIVNRGVTSRC*
Ga0066905_1002941481	3300005713	Tropical Forest Soil	IGRAKTRAAIRLAESLGLIAIEQEPGQARVIINRRVTSRR*
Ga0066905_1017421502	3300005713	Tropical Forest Soil	TLPVARIAERANIGRAKARAAIRLAEDLGLIAIEEAPDRKRVIINRGVTSRR*
Ga0068866_111717443	3300005718	Miscanthus Rhizosphere	LPVARIAERANIGRAKARAAIRLAEGLGLITIEETPDRKRVIVNRGVTSRC*
Ga0068861_1016289561	3300005719	Switchgrass Rhizosphere	PVARIAERANVGRAKVRAAIKLAERLEIIAIEIAPDRRRVIINRCVTSRC*
Ga0066903_1036686913	3300005764	Tropical Forest Soil	PDVAEQLNVDTMAVLAVIRNEAETTGKCALPVARIAERANIGRAKVRAAIKLAESLGVISIETPAAGKRVIINRGITSRCWVTVLIAA*
Ga0066903_1071387051	3300005764	Tropical Forest Soil	KTRAAIRLAESLGLIAIEEAPDRTRVIINRGVKFRC*
Ga0068870_112038072	3300005840	Miscanthus Rhizosphere	VARIAERANVGRAKVRAAIKLAERLEIIAIEIAPDRRRVIINRCVKSRC*
Ga0081455_100345449	3300005937	Tabebuia Heterophylla Rhizosphere	MKARTTGKCTLPVARIAERANIGRAKARASIRLAASLGVNTIEEVPGGKRVIINRVISSRC*
Ga0081455_100545011	3300005937	Tabebuia Heterophylla Rhizosphere	TRAAIRLAESLGLIAIEQEPGQERAIINRSVSSRC*
Ga0070717_105670351	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	RNEAQASGKCSLPVARIAERANIGRAKARAAIRLAEGLGLIAIEETPDRKRVIVNRGVTSRC*
Ga0075365_106085202	3300006038	Populus Endosphere	LHIAERANIGRAKTRAAIRLAENLGLITIEQEPGRERAIINRGVSSRC*
Ga0075364_110354461	3300006051	Populus Endosphere	KCTLPVARIAERANIGRAKTRAAIRLAQSLGLIDIEQEPGQERAIINRGVMSR*
Ga0075364_111316441	3300006051	Populus Endosphere	AKARAAIRLAESLGLIAIEETPDRKRVIVNRRVTSRC*
Ga0075026_1007971041	3300006057	Watersheds	ARIAERANIGRAKARAAIRLAEGLGLIAIEETPDRKRVIVNRGVTSRC*
Ga0075428_1006520411	3300006844	Populus Rhizosphere	VARIAERANIGRAKVRAAIRLAESLGVILVEETSGGKRTIVNRGVTSRC*
Ga0075430_1004670603	3300006846	Populus Rhizosphere	ARIAERANIGRAKVRAAIRLAESLGAILVEETSGGKPTIVNRGVTSRC*
Ga0075430_1017326172	3300006846	Populus Rhizosphere	ARIAERANIGRAKARAAIRLAEGLGLIAIEEAPDRKRVIINRGVTSRC*
Ga0075419_104404031	3300006969	Populus Rhizosphere	IAERANIGRAKTRAAIRLAESLGLIAIEQEPGQERAIINRGISSRC*
Ga0105250_103743531	3300009092	Switchgrass Rhizosphere	AMAVLAVIRNEAAATGRCTLPVARIAERANVGRAKVRAAIKLAGRLEIIAIEIAPDRRRVIINRCVTSRC*
Ga0111539_111842321	3300009094	Populus Rhizosphere	GKCTLPVARIAERANIGRAKTRAAIRLAQSLGLIDIEQEPGQERAIINRGVMSR*
Ga0111539_118543111	3300009094	Populus Rhizosphere	TDAMAVLAVIRNEAAATGKCTLPVARIAERANVGRAKVRAAIKLAERLEIIAIEIAPDRRRVIINRCVTSRC*
Ga0075418_116677893	3300009100	Populus Rhizosphere	LAVIRDEARATGRCTLPVARIAERANIGRAKTRAAIRLAESLGLIAIEQEPGRERAIINRGVTSRC*
Ga0075418_123950971	3300009100	Populus Rhizosphere	ERANIGRAKARAAIRLAEGLGLIAIEEAPDRKRVIINRGVTSRY*
Ga0114129_113976611	3300009147	Populus Rhizosphere	KTRAAIRLAQSLGLIDIEQEPGQERAIINRGVMSR*
Ga0114129_119557532	3300009147	Populus Rhizosphere	MHSTVARIAERANIGRAKTRAAIRLAEGLGLIAIEETPGRKRVIINRGVSSRC*
Ga0105243_115005151	3300009148	Miscanthus Rhizosphere	LPVARIAERANIGRAKARAAIRLAEGLGLIAIEETPDRKRVIVNRNVTSRC*
Ga0105243_121064741	3300009148	Miscanthus Rhizosphere	LPVARIAERANIGRAKARAAIRLAEGLGLIAIEETPDRKRVIVNRGVTSRC*
Ga0105249_106279091	3300009553	Switchgrass Rhizosphere	AQLAERANIGRAKVRAAIRLAESLGLIAIEETPDRKRVIVNRGVMSRC*
Ga0126313_101077243	3300009840	Serpentine Soil	AATGKCTLPVARIAERANVGRAKVRAAIKLAERLEIIAIEIAPDRRRVIINRCVKSRC*
Ga0099796_104353831	3300010159	Vadose Zone Soil	RAAIRLAESLGLIAIDHMPTGKRVIVNRCVKSRC*
Ga0126376_132324901	3300010359	Tropical Forest Soil	AERANIGRAKARAAIRLAESLGLIAIEHEPGRERAIINLGVSSRC*
Ga0126377_113674261	3300010362	Tropical Forest Soil	RDEARATGKCTLPVARIAERANIGRAKTRAAIRLAESLGLIAIEQEPGQERAIINRGVTSRC*
Ga0126379_113385472	3300010366	Tropical Forest Soil	IAERANIGRAKARAAIRLAESLGLIAIEHEPGRERAIINLGVSSRC*
Ga0126383_131980141	3300010398	Tropical Forest Soil	VARIAERANIGRTKVRAAIRLAESLGAIAIKEVPGRKRVFVNRCVTFRC*
Ga0105246_103931651	3300011119	Miscanthus Rhizosphere	RIAERANIGRAKARAAIRLAEGLGLIAIEETPDRKRVIVNRGVTSRC*
Ga0105246_116757422	3300011119	Miscanthus Rhizosphere	TVVVPPSISELLNTDAMAVLAVIRNEAAATGKCTLPVARIAERANVGRAKVRAAIKLAERLEIIAIEIAPDRRRVIINRCVKSRC*
Ga0137377_104638311	3300012211	Vadose Zone Soil	VLAVIRDEAKETGKCSLPVGRIAERANIGRAKVRAAIRLAERLSIIKIEQMPRRKRLIIIQ*
Ga0150985_1190125501	3300012212	Avena Fatua Rhizosphere	MDALAVLAVIRHEAQTTGKCTLPVAQLAERTNVGRAKVRAAIRLAESLGLIAIEETPDRKRVIVNRGVTSRC*
Ga0150985_1191044441	3300012212	Avena Fatua Rhizosphere	PVARIAERANVGRAKVRAAIKLAERLEIIAIEIAPDRRRVIINRCVKSRC*
Ga0137371_110852882	3300012356	Vadose Zone Soil	NIGRAKARAAIRLAESLGAIAIEEVPGRKRVFVNRCVTSRC*
Ga0150984_1185178671	3300012469	Avena Fatua Rhizosphere	GKCSLPVARIAERANIGRAKARAAIRLAEGLGLITIEETPDRKRVTVNRGVTSRC*
Ga0157321_10186911	3300012487	Arabidopsis Rhizosphere	TRARAAIRLAETLGAIAIEETPSRKRVFVYRCVS*
Ga0137397_109380231	3300012685	Vadose Zone Soil	RAAIRLAEGLGLIAIEETPDRKRVIVNRGVTSRC*
Ga0126375_115105711	3300012948	Tropical Forest Soil	ANIGRAKARAAIRLAESLGLIAIEHEPGRERAIINLGVSSRC*
Ga0164300_102352311	3300012951	Soil	MDAMAVLAVIRNEAHTTGKCTLPVARIAERANIGRAKVRAAIKLAESLGVIAIEEMPPGGKRVIINRGITSRC*
Ga0164299_109912411	3300012958	Soil	RAAIRLAESLGLIAIEETPDRKRVIINRGVTSRC*
Ga0164301_102205211	3300012960	Soil	KCAPPVARTAERANIGRAKARAAIRLAEGLGLIAIEETPDRKRVIVNRGVTSRC*
Ga0164309_110135022	3300012984	Soil	ASGKCSLPLARIAERANIGRAKARAAIRLAEGLGLIAIEETPDRKRVIVNRGVTSRC*
Ga0164307_100190601	3300012987	Soil	EADTTGRCTLPVARIAERANVGRAKTRAAIRLAESLGIIGIEVAPDRKRMIINRYVRSRCGTSSLRPMWET*
Ga0164306_113475661	3300012988	Soil	MHPKVAQLAERANIGRAKVRAAIRLAESLGLIAIEETPDRKRVIVNRGVTSRC*
Ga0164305_119987551	3300012989	Soil	KCSLPLARIAERANIGRAKARAAIRLAEGLGLIAIEETPDRKRVIVNRGVASRC*
Ga0163163_129399352	3300014325	Switchgrass Rhizosphere	IAERANVGRAKVRAAIKLAERFEIIAIEIAPDRRRVIINRCVKSRC*
Ga0173483_105034031	3300015077	Soil	AVIRNEAQASGKCSLPVARIAERANIGRAKARAAIRLAEGLGLIAIEETPDRKRVIVNRGVTSRC*
Ga0137412_101841681	3300015242	Vadose Zone Soil	ARAAIRLAEGLGLIAIEETPDRKRVIVNRGVTSRC*
Ga0132258_114909933	3300015371	Arabidopsis Rhizosphere	MHSAGRRIAERAHIGRAKVRAAIKLAESLSIIAIEETPPGGKRVIINRGITSRC*
Ga0132256_1000733648	3300015372	Arabidopsis Rhizosphere	MDAMAVLAVIRNEAQTTGRCTLPVARIAERAHIGRAKVRAAIKLAESLSIIAIEATPPGGKRVIINRGITSRC*
Ga0132256_1036701562	3300015372	Arabidopsis Rhizosphere	AERANIGRAKTRAAIRLAEYLGLIAIEQKPGPERAIINRGVPSR*
Ga0132257_1026761952	3300015373	Arabidopsis Rhizosphere	ERANIGRAKARAAIRLAEGLGLIAIEETPDRKRVIVNRGVTSRC*
Ga0132255_1001609271	3300015374	Arabidopsis Rhizosphere	ERANVGRAKVRAAIKLAERLEIIAIEIAPDRKRVIINRSVTSRC*
Ga0132255_1005189464	3300015374	Arabidopsis Rhizosphere	KTRAAIRLAESLGLIAIEQEPGRERAIINRGVTSRC*
Ga0132255_1041601221	3300015374	Arabidopsis Rhizosphere	KRPSGTKPRAAIRLAESLGLIAIGKTPDRKRVIVNLGVTSRC*
Ga0184610_10463524	3300017997	Groundwater Sediment	RANIGRAKARAAIRLAEGLGLIAIEETPDRKRVIVNRGVTSRC
Ga0184621_102870391	3300018054	Groundwater Sediment	MSEHLNVDAMAVLAVIRNEASATGKCTLPGARIAERANVGRAKARAAIRLAERLGIIAIEVAPDRKRMIINRCVTSRC
Ga0184611_11370842	3300018067	Groundwater Sediment	AERANIGRAKVRAAIRLAEKLGLITIEETPDRKRVILNRGITSRC
Ga0184624_101951802	3300018073	Groundwater Sediment	VIRNEAAATGKCALPVARIAERANVGRAKVRAAIKLAERLEIIAIEIAPDRRRVIINRCVTSRC
Ga0184624_103053001	3300018073	Groundwater Sediment	NTDAMAVLAVIRNEAQASGKCSLPVARTAERANIGRAKARAAIRLAEGLGLIAEETPDRKRVIVNRNVTSRC
Ga0184640_104497791	3300018074	Groundwater Sediment	KWSLPVARIAERANIGRAKTRAAIRLAKKLGLITIEETPDQKRVILNRGITSRC
Ga0190270_112375762	3300018469	Soil	PVARIAERANVGRAKVRAAIKLAERLEIIAIEIAPDRRRVIINRCVTSRC
Ga0190270_120205482	3300018469	Soil	ERANIGRAKARAAIRLAEGLGLIAIEETPDRKRVIVNRGVTSRC
Ga0190274_115152662	3300018476	Soil	ERANVGRAKVRAAIKLAERLEIIAIEIAPDRRRVIINRCVTSRC
Ga0184643_14509202	3300019255	Groundwater Sediment	ASGKCSLPVARIAERANIGRAKARAAIRLAEGLGLIAIEETPGRKRVIVNRGVTSRC
Ga0193731_11618582	3300020001	Soil	RAKARAAIRLAEGLGLIAIEETPDRKRVIVNRGVTSRC
Ga0193730_10592423	3300020002	Soil	LPVARIAERANIGRAKARAAIRLAEGLGLIAIEETPDRKRVIVNRGVTSRC
Ga0210382_102514622	3300021080	Groundwater Sediment	SLPVARIAERANIGRAKARAAIRLAEGLGLIAIEETPDRKRVIVNRGVTSRC
Ga0222623_102178141	3300022694	Groundwater Sediment	SGKCSLPLARIAERANIGRAKARAAIRLAEGLGLIAIEETPDRKRVIVNRGVTSRC
Ga0207699_113423271	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	AERANIGRAKARAAIRLAEGLGLIAIEETPDRKRVIVNRGVTSRC
Ga0207686_109287162	3300025934	Miscanthus Rhizosphere	KCSLPVARIAERANIGRAKARAAIRLAEGLGLIAIEETPDRKRVIVNRGVTSRC
Ga0207669_103695053	3300025937	Miscanthus Rhizosphere	VLAVIRNETQTTGKCTLPVAQLAERANIGRAKVRAAIRLAESLGLIAIEETPDRKRVIVNRGVMSRC
Ga0207658_107039221	3300025986	Switchgrass Rhizosphere	IAERANVGRAKVRAAIKLAERLEIIAIEIAPDRRRVIINRCVTSRC
Ga0207708_109982212	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	RANIGRAKARAAIRLAEGLGLIAIEETPDRKRVIVNRNVTSRC
Ga0209382_105480831	3300027909	Populus Rhizosphere	PAGALYLWRRIAARANIGRAKVRAAIRLAQSLGVISVEQTPGGKRTIVNRGLKSRC
Ga0268264_102179861	3300028381	Switchgrass Rhizosphere	VARIAERANVGRAKVRAAIKLAERLEIIAIEIAPDRRRVIINRCVTSRC
Ga0247828_106485182	3300028587	Soil	ANVGRAKVRAAIKLAERLEIIAIEIAPDRRRVIINRCVTSRC
Ga0307291_12051092	3300028707	Soil	EAQASGKCSLPLARIAERANIGRAKARAAIRLAEGLGLIAIEETPDRKRVIVNRGVTSRC
Ga0307293_101792342	3300028711	Soil	LPLARIAERANIGRAKARAAIRLAEGLGLIAIEETPDRKRVIVNRGVTSRC
Ga0307313_102696471	3300028715	Soil	AVLAVIRNEAAATGKCTLPVARIAERANVGRAKVRAAIRLAERLGIIAVGVAPDRKRMIINRCVTSRC
Ga0307301_102002661	3300028719	Soil	NIGRAKVRAAIRLAESLGLIAIEETPDRKRVIVNRGVMSRC
Ga0307288_103105061	3300028778	Soil	RAKVRAAIRLAESLGLIAIDETPDRKRVIVNRGVMSRC
Ga0307299_100728831	3300028793	Soil	SLPLARIAERANVGRAKTRAAIRLAERFGIIAIEVASDRKRMIINRCVTSRC
Ga0307503_102601582	3300028802	Soil	QGACRHRLAEGLGLIAEETPDRKRVIVNRNVTSRC
Ga0307294_103760761	3300028810	Soil	NEAAATGKCTLPVARIAERANVGRAKARAAIRLAERLGIIAIEVAPDRKRMIINRCVTSR
Ga0307312_106810701	3300028828	Soil	AKARAAIRLAESLGLIAIEETPDRKRVIVNRGVTSRC
Ga0307286_100368553	3300028876	Soil	LNIDAMAILAVIRNEAAATEKCTLPVARIAERANVGRAKARAAIRLAERLGIIAIEVAPDRKRMIINRCVTSRC
Ga0307286_102976412	3300028876	Soil	PVARIAERANIGRAKARAAIRLAEGLGLIAIEETPDRKRVIVNRGVTSRC
Ga0307300_101938581	3300028880	Soil	EALAVLAVIRNETQTTGKCTLPVAQLAERANIGRAKVRAAIRLAESLGLIAIDETPDRKRVIVNRGVMSRC
Ga0307308_104870391	3300028884	Soil	GCGLSRSKLRANIGTAKARAAIRLAESLGLIAIDHMPTGKRVIVNRCVKSRC
Ga0308203_10074451	3300030829	Soil	VARIAERANIGRVKARAAIRLAEGLGLIAIEETPDRKRVIVNRGVTSRC
Ga0307498_101831862	3300031170	Soil	LARIAERANIGRAKARAAIRLAEGLGLIAIEETPDRKRVIVNRGVTSRC
Ga0307497_100539942	3300031226	Soil	AVIRNEAPASGKCSLPVARIAERANIGRAKARAAIRLAEGLGLIAIEETPDQKRVIVNRGVTSRC
Ga0318534_105216612	3300031544	Soil	VARIAERANVGRGKTRAAIRLAESLGLIAIEEAPTETGVIINRGVKSRC
Ga0310909_104032452	3300031947	Soil	KCTLPVARIAERANVGRGKTRAAIRLAESLGLIAIEEAPTETGVIINRGVKSRC
Ga0310906_114240782	3300032013	Soil	IRNEAAATGKCTLPVARIAERANVGRAKVRAAIRLAERLGIIAVGVAPDRKRMIINRCVTSRC
Ga0318577_103759652	3300032091	Soil	LPVARIAERANVGRGKTRAAIRLAESLGLIAIEEAPTETGVIINRGVKSRC

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.60
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.60
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F079757

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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