Metagenome / Metatranscriptome Family F079756

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F079756
Family Type	Metagenome / Metatranscriptome
Number of Sequences	115
Average Sequence Length	41 residues
Representative Sequence	MFSLALFGPFDPDPVERRRPRRRGDGRVDSRPSVPPRGGTR
Number of Associated Samples	97
Number of Associated Scaffolds	115

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	78.26 %
% of genes near scaffold ends (potentially truncated)	29.57 %
% of genes from short scaffolds (< 2000 bps)	75.65 %
Associated GOLD sequencing projects	90
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.17

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (83.478 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (15.652 % of family members)
Environment Ontology (ENVO)	Unclassified (30.435 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (39.130 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 0.00% Coil/Unstructured: 100.00%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.17
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.17
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 115 Family Scaffolds
PF05534	HicB	35.65
PF13349	DUF4097	19.13
PF01594	AI-2E_transport	9.57
PF00664	ABC_membrane	7.83
PF13345	Obsolete Pfam Family	6.96
PF01475	FUR	1.74
PF00005	ABC_tran	1.74
PF00528	BPD_transp_1	1.74
PF01297	ZnuA	0.87
PF00221	Lyase_aromatic	0.87
PF02073	Peptidase_M29	0.87

COG ID	Name	Functional Category	% Frequency in 115 Family Scaffolds
COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	Defense mechanisms [V]	35.65
COG4226	Predicted nuclease of the RNAse H fold, HicB family	General function prediction only [R]	35.65
COG0628	Predicted PurR-regulated permease PerM	General function prediction only [R]	9.57
COG0735	Fe2+ or Zn2+ uptake regulation protein Fur/Zur	Inorganic ion transport and metabolism [P]	1.74
COG2309	Leucyl aminopeptidase (aminopeptidase T)	Amino acid transport and metabolism [E]	0.87
COG2986	Histidine ammonia-lyase	Amino acid transport and metabolism [E]	0.87

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	83.48 %
Unclassified	root	N/A	16.52 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	83.48 %
Unclassified	root	N/A	16.52 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	83.48 %
Unclassified	root	N/A	16.52 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	82.61 %
Unclassified	root	N/A	16.52 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	82.61 %
Unclassified	root	N/A	16.52 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	27.83 %
Unclassified	root	N/A	16.52 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	1.74 %

Name	Rank	Taxonomy	Distribution
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	18.26 %
Unclassified	root	N/A	16.52 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	6.96 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	0.87 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	0.87 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	18.26 %
Unclassified	root	N/A	16.52 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	6.96 %
Nocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae	0.87 %
Conexibacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae	0.87 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	18.26 %
Unclassified	root	N/A	16.52 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	6.96 %
Conexibacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter	0.87 %
Nocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae	0.87 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	18.26 %
Unclassified	root	N/A	16.52 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	6.96 %
Conexibacter woesei	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter → Conexibacter woesei	0.87 %
Nocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae	0.87 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2070309009\|GPKNP_F5JHDJD02G3UI9	Not Available	530	Open in IMG/M
2070309009\|GPKNP_GG3DY5401EACEY	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	530	Open in IMG/M
3300000956\|JGI10216J12902_104704146	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	886	Open in IMG/M
3300000956\|JGI10216J12902_113778469	Not Available	586	Open in IMG/M
3300003203\|JGI25406J46586_10019298	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2783	Open in IMG/M
3300003267\|soilL1_10212781	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1423	Open in IMG/M
3300003996\|Ga0055467_10202419	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae	613	Open in IMG/M
3300003999\|Ga0055469_10008806	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1985	Open in IMG/M
3300004013\|Ga0055465_10016790	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1606	Open in IMG/M
3300004463\|Ga0063356_101511367	Not Available	995	Open in IMG/M
3300004643\|Ga0062591_101419068	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	690	Open in IMG/M
3300005104\|Ga0066818_1009084	Not Available	712	Open in IMG/M
3300005164\|Ga0066815_10064659	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	631	Open in IMG/M
3300005332\|Ga0066388_102628755	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	917	Open in IMG/M
3300005334\|Ga0068869_100335932	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1228	Open in IMG/M
3300005336\|Ga0070680_101808420	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	529	Open in IMG/M
3300005345\|Ga0070692_10003307	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	6510	Open in IMG/M
3300005347\|Ga0070668_100395953	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1178	Open in IMG/M
3300005367\|Ga0070667_100112505	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2361	Open in IMG/M
3300005441\|Ga0070700_100031045	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3198	Open in IMG/M
3300005459\|Ga0068867_100185009	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1659	Open in IMG/M
3300005535\|Ga0070684_100075832	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2967	Open in IMG/M
3300005539\|Ga0068853_101515659	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	649	Open in IMG/M
3300005718\|Ga0068866_10151618	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1343	Open in IMG/M
3300005840\|Ga0068870_10795805	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	660	Open in IMG/M
3300005937\|Ga0081455_10330356	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1082	Open in IMG/M
3300006844\|Ga0075428_100740101	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1046	Open in IMG/M
3300006918\|Ga0079216_11210678	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	608	Open in IMG/M
3300007004\|Ga0079218_10314557	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1280	Open in IMG/M
3300009094\|Ga0111539_10110327	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3228	Open in IMG/M
3300009101\|Ga0105247_10183690	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1397	Open in IMG/M
3300009147\|Ga0114129_11044466	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1026	Open in IMG/M
3300009157\|Ga0105092_10714345	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	583	Open in IMG/M
3300009553\|Ga0105249_10639507	Not Available	1121	Open in IMG/M
3300009870\|Ga0131092_10001423	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	52444	Open in IMG/M
3300009873\|Ga0131077_10005714	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	27718	Open in IMG/M
3300009873\|Ga0131077_10122683	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3031	Open in IMG/M
3300009873\|Ga0131077_11353015	Not Available	590	Open in IMG/M
3300010362\|Ga0126377_10031635	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4477	Open in IMG/M
3300010362\|Ga0126377_10278334	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1641	Open in IMG/M
3300010371\|Ga0134125_10624854	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1190	Open in IMG/M
3300010371\|Ga0134125_12962737	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	515	Open in IMG/M
3300010375\|Ga0105239_10346921	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1676	Open in IMG/M
3300010397\|Ga0134124_10154591	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2049	Open in IMG/M
3300010399\|Ga0134127_12687365	Not Available	578	Open in IMG/M
3300011332\|Ga0126317_10073126	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	532	Open in IMG/M
3300011412\|Ga0137424_1095615	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	604	Open in IMG/M
3300012092\|Ga0136621_1022855	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2567	Open in IMG/M
3300012093\|Ga0136632_10038143	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2195	Open in IMG/M
3300012903\|Ga0157289_10203829	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	647	Open in IMG/M
3300012943\|Ga0164241_10183684	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1496	Open in IMG/M
3300012960\|Ga0164301_10023786	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2796	Open in IMG/M
3300012961\|Ga0164302_11775716	Not Available	520	Open in IMG/M
3300012985\|Ga0164308_10573059	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	956	Open in IMG/M
3300014272\|Ga0075327_1037959	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1429	Open in IMG/M
3300014302\|Ga0075310_1028124	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1043	Open in IMG/M
3300014310\|Ga0075331_1014723	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1736	Open in IMG/M
3300014320\|Ga0075342_1079438	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	833	Open in IMG/M
3300014325\|Ga0163163_10756404	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1035	Open in IMG/M
3300015371\|Ga0132258_10090660	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter → Conexibacter woesei	7168	Open in IMG/M
3300015371\|Ga0132258_10095276	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	6995	Open in IMG/M
3300015371\|Ga0132258_10525276	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2963	Open in IMG/M
3300017695\|Ga0180121_10397567	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	535	Open in IMG/M
3300017787\|Ga0183260_10016744	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	5613	Open in IMG/M
3300017787\|Ga0183260_10030597	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4067	Open in IMG/M
3300017789\|Ga0136617_10223570	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1578	Open in IMG/M
3300017965\|Ga0190266_10024340	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1829	Open in IMG/M
3300017965\|Ga0190266_10189627	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	971	Open in IMG/M
3300018466\|Ga0190268_10053229	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1621	Open in IMG/M
3300018466\|Ga0190268_10987281	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	669	Open in IMG/M
3300018476\|Ga0190274_10149602	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1968	Open in IMG/M
3300018476\|Ga0190274_10392448	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1342	Open in IMG/M
3300018476\|Ga0190274_11193619	Not Available	844	Open in IMG/M
3300018481\|Ga0190271_10002581	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	11054	Open in IMG/M
3300018481\|Ga0190271_10196492	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2003	Open in IMG/M
3300019356\|Ga0173481_10004607	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3631	Open in IMG/M
3300019356\|Ga0173481_10010567	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2597	Open in IMG/M
3300019362\|Ga0173479_10023897	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1775	Open in IMG/M
3300020078\|Ga0206352_11027098	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	572	Open in IMG/M
3300021082\|Ga0210380_10359410	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	665	Open in IMG/M
3300022901\|Ga0247788_1001211	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3913	Open in IMG/M
3300023077\|Ga0247802_1019596	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	945	Open in IMG/M
3300023102\|Ga0247754_1004064	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2814	Open in IMG/M
3300023268\|Ga0247765_1035124	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1046	Open in IMG/M
3300024055\|Ga0247794_10072205	Not Available	984	Open in IMG/M
3300025567\|Ga0210076_1045370	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	949	Open in IMG/M
3300025908\|Ga0207643_10092094	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1768	Open in IMG/M
3300025926\|Ga0207659_10135967	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1903	Open in IMG/M
3300025934\|Ga0207686_10694802	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	808	Open in IMG/M
3300025937\|Ga0207669_11027530	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	693	Open in IMG/M
3300025941\|Ga0207711_10106462	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2488	Open in IMG/M
3300025944\|Ga0207661_10292365	All Organisms → cellular organisms → Bacteria	1458	Open in IMG/M
3300025986\|Ga0207658_10492189	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1091	Open in IMG/M
3300026035\|Ga0207703_10397461	Not Available	1278	Open in IMG/M
3300026051\|Ga0208911_1002912	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1509	Open in IMG/M
3300026075\|Ga0207708_11012099	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	722	Open in IMG/M
3300026078\|Ga0207702_10715095	Not Available	987	Open in IMG/M
3300027401\|Ga0208637_1006466	Not Available	1110	Open in IMG/M
3300027886\|Ga0209486_10195606	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1141	Open in IMG/M
3300028379\|Ga0268266_10127780	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2270	Open in IMG/M
3300028587\|Ga0247828_11191904	Not Available	509	Open in IMG/M
3300028589\|Ga0247818_10615166	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	748	Open in IMG/M
3300028592\|Ga0247822_11058427	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	672	Open in IMG/M
3300028597\|Ga0247820_10087134	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1876	Open in IMG/M
3300028803\|Ga0307281_10347212	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	561	Open in IMG/M
3300028889\|Ga0247827_11060998	Not Available	554	Open in IMG/M
3300030336\|Ga0247826_10033924	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2656	Open in IMG/M
3300030336\|Ga0247826_10117091	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1693	Open in IMG/M
3300030336\|Ga0247826_10995814	Not Available	665	Open in IMG/M
3300030336\|Ga0247826_11329225	Not Available	579	Open in IMG/M
3300031548\|Ga0307408_101825456	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	582	Open in IMG/M
3300031847\|Ga0310907_10307142	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	800	Open in IMG/M
3300031938\|Ga0308175_103287615	Not Available	501	Open in IMG/M
3300032075\|Ga0310890_11251169	Not Available	606	Open in IMG/M
3300033550\|Ga0247829_10468644	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1041	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	70.43%
Host-Associated	Host-Associated	26.09%
Engineered	Engineered	3.48%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	58.26%
Plants	Host-Associated → Plants	26.09%
Aquatic	Environmental → Aquatic	12.17%
Wastewater	Engineered → Wastewater	3.48%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	57.39%
Rhizosphere	Host-Associated → Plants → Rhizosphere	13.04%
Rhizoplane	Host-Associated → Plants → Rhizoplane	12.17%
Freshwater	Environmental → Aquatic → Freshwater	7.83%
Marine	Environmental → Aquatic → Marine	3.48%
Activated Sludge	Engineered → Wastewater → Activated Sludge	3.48%
Sediment	Environmental → Aquatic → Sediment	0.87%
Plant Litter	Environmental → Terrestrial → Plant Litter	0.87%
Roots	Host-Associated → Plants → Roots	0.87%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	46.96%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	9.57%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	7.83%
Loam	Environmental → Terrestrial → Soil → Loam	6.09%
Ice	Environmental → Aquatic → Freshwater → Ice	5.22%
Soil	Host-Associated → Plants → Rhizosphere → Soil	5.22%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	4.35%
Wetlands	Environmental → Aquatic → Marine → Wetlands	3.48%
Unclassified	Engineered → Wastewater → Activated Sludge → Unclassified	3.48%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.61%
Sediment	Environmental → Aquatic → Freshwater → Sediment	1.74%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.87%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.87%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	0.87%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.87%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	24.35%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	11.30%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	9.57%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	7.83%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	7.83%
Unclassified	Environmental → Aquatic → Freshwater → Ice → Unclassified	5.22%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.22%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	5.22%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	4.35%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	3.48%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.48%
Unclassified	Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified	3.48%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.61%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	1.74%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.87%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.87%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.87%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	0.87%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.87%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	15.65%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	11.30%
Polar Desert Sand	Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand	5.22%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	4.35%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	4.35%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	3.48%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	3.48%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	3.48%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.48%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	3.48%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.61%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	2.61%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.61%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	2.61%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	2.61%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.61%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	2.61%
Wastewater	Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Wastewater	2.61%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.74%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.74%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	1.74%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	1.74%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	0.87%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.87%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.87%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	0.87%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.87%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.87%
Sugarcane Root And Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil	0.87%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.87%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	0.87%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.87%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.87%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.87%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.87%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.87%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.87%
Activated Sludge	Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Activated Sludge	0.87%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2070309009	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300003203	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2	Host-Associated	Open in IMG/M
3300003267	Sugarcane bulk soil Sample L1	Environmental	Open in IMG/M
3300003996	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailB_D2	Environmental	Open in IMG/M
3300003999	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleA_D2	Environmental	Open in IMG/M
3300004013	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailA_D2	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005104	Soil and rhizosphere microbial communities from Laval, Canada - mgHAC	Environmental	Open in IMG/M
3300005164	Soil and rhizosphere microbial communities from Laval, Canada - mgLAC	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005336	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG	Environmental	Open in IMG/M
3300005345	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG	Environmental	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005367	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG	Host-Associated	Open in IMG/M
3300005441	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG	Environmental	Open in IMG/M
3300005459	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2	Host-Associated	Open in IMG/M
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300005539	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2	Host-Associated	Open in IMG/M
3300005718	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2	Host-Associated	Open in IMG/M
3300005840	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2	Host-Associated	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006918	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS100	Environmental	Open in IMG/M
3300007004	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009157	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm March2015	Environmental	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300009870	Activated sludge microbial diversity in wastewater treatment plant from Taiwan - Linkou plant	Engineered	Open in IMG/M
3300009873	Activated sludge microbial diversity in wastewater treatment plant from Taiwan - Wenshan plant	Engineered	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300011332	Soil microbial communities from California, USA to study soil gas exchange rates - SR-CA-SC2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300011412	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT620_2	Environmental	Open in IMG/M
3300012092	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ445A (23.06)	Environmental	Open in IMG/M
3300012093	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ611 (21.06)	Environmental	Open in IMG/M
3300012903	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S134-311R-1	Environmental	Open in IMG/M
3300012943	Backyard soil microbial communities from Emeryville, California, USA - Original compost - Back yard soil (BY)	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300014272	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberrySE_CattailB_D1	Environmental	Open in IMG/M
3300014302	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNE_CattailA_D2	Environmental	Open in IMG/M
3300014310	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberrySE_TuleA_D1	Environmental	Open in IMG/M
3300014320	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushOxbow_ThreeSqA_D1	Environmental	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300017695	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ540 (21.06) (version 2)	Environmental	Open in IMG/M
3300017787	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ497 (22.06) (version 2)	Environmental	Open in IMG/M
3300017789	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ322 (21.06)	Environmental	Open in IMG/M
3300017965	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 220 T	Environmental	Open in IMG/M
3300018466	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 T	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300019356	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)	Environmental	Open in IMG/M
3300019362	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S104-311B-1 (version 2)	Environmental	Open in IMG/M
3300020078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-5 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300021082	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5_coex redo	Environmental	Open in IMG/M
3300022901	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S156-409C-4	Environmental	Open in IMG/M
3300023077	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S076-202R-6	Environmental	Open in IMG/M
3300023102	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S184-509B-5	Environmental	Open in IMG/M
3300023268	Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L106-311C-6	Environmental	Open in IMG/M
3300024055	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S046-202B-6	Environmental	Open in IMG/M
3300025567	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailA_D2 (SPAdes)	Environmental	Open in IMG/M
3300025908	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025934	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025937	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025941	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025944	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025986	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026035	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026051	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberrySE_CattailA_D1 (SPAdes)	Environmental	Open in IMG/M
3300026075	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027401	Soil and rhizosphere microbial communities from Laval, Canada - mgLAC (SPAdes)	Environmental	Open in IMG/M
3300027886	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost (SPAdes)	Environmental	Open in IMG/M
3300028379	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300028587	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day3	Environmental	Open in IMG/M
3300028589	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glucose_Day1	Environmental	Open in IMG/M
3300028592	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Cellulose_Day30	Environmental	Open in IMG/M
3300028597	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glucose_Day14	Environmental	Open in IMG/M
3300028803	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_120	Environmental	Open in IMG/M
3300028889	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day2	Environmental	Open in IMG/M
3300030336	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day1	Environmental	Open in IMG/M
3300031548	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3	Host-Associated	Open in IMG/M
3300031847	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D4	Environmental	Open in IMG/M
3300031938	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1	Environmental	Open in IMG/M
3300032075	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3	Environmental	Open in IMG/M
3300033550	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day4	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
GPKNP_07456220	2070309009	Soil	MFSFALFGPLDPDPVERCRPRKRGDSRVDVRPSAPERLARG
GPKNP_02706230	2070309009	Soil	MFSLALFGPFDPDPVERRRPRRRGDGRVDSRPSVPPSGGPR
JGI10216J12902_1047041462	3300000956	Soil	PMFSYALFGPLDPDPVERRRPRRRGDGRVDVRPSAPERLARG*
JGI10216J12902_1137784692	3300000956	Soil	MFSYALFGPVDPDPVERRRPHRRGDQRVDGRPSVPARLERG*
JGI25406J46586_100192982	3300003203	Tabebuia Heterophylla Rhizosphere	MFSFTLFGPFDPDPVERRRPPRRGDGRVDSRPSVPQRPWRP*
soilL1_102127811	3300003267	Sugarcane Root And Bulk Soil	MFSFTLFGPLDPDPVERRRPPRRGDGRVDSRPSVPGRLGRS*
Ga0055467_102024192	3300003996	Natural And Restored Wetlands	MFSLALFGPFDPDPVERRRPRRRGDGRVDSRPSVPPRGGTR*
Ga0055469_100088062	3300003999	Natural And Restored Wetlands	MFSFALFGPLDPDPVERRRPRRRGDSRPDVRPSAPARLVRG*
Ga0055465_100167902	3300004013	Natural And Restored Wetlands	MFSLALFGPFDPDPVERRRPPRRGDGRVDSRPSVPPRLGNAR*
Ga0063356_1015113671	3300004463	Arabidopsis Thaliana Rhizosphere	MFSYALFGPIDPDPVERRRPRRRGDSRVDIRPSAPERLARG*
Ga0062591_1014190682	3300004643	Soil	MFSLALFGPFDPDPVERRRPPRRGDGRVDSRPSVPPRLGNPR*
Ga0066818_10090841	3300005104	Soil	MFSLALFGPFDPDPVERRRPRRRGDGRVDSRPSVPPTGGPR*
Ga0066815_100646592	3300005164	Soil	MFSLALFGPFDPDPVERRRPARRGDGRVDSRPSVPPRFGLR*
Ga0066388_1026287551	3300005332	Tropical Forest Soil	MFSLALFAPFDPDPTERRRPPRRGDGRVDSRPSVPPRFGPR*
Ga0068869_1003359322	3300005334	Miscanthus Rhizosphere	MFSFALFGPFDPDPVERRRPRRRGDGRVDSRPSVPPSGGPR*
Ga0070680_1018084202	3300005336	Corn Rhizosphere	MFSLALFGPFDPDPVERRRPRRRGDGRVDSRPSVPPSGGPR*
Ga0070692_100033072	3300005345	Corn, Switchgrass And Miscanthus Rhizosphere	MFSLALFGPFDPDPAERRRPRRRGDGRVDSRPSVPPRGGTR*
Ga0070668_1003959533	3300005347	Switchgrass Rhizosphere	SFALFGPLDPDPVERRRPRRRGDGRVDVRPSAPARMARA*
Ga0070667_1001125052	3300005367	Switchgrass Rhizosphere	MFSLALFGPFDPDPVERRRPRRRGDGRVDSRPSIPPSGGPR*
Ga0070700_1000310451	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	EGRKEHTMFSLALFGPFDPDPVERRRPRRRGDGRVDSRPSVPPSGGPR*
Ga0068867_1001850093	3300005459	Miscanthus Rhizosphere	MFSYALFGPLDPDPVERRRPRRRGDGRVDIRPSAPERLARG*
Ga0070684_1000758321	3300005535	Corn Rhizosphere	MFSLALFGPFDPDPVERRRPPRRGDGRIDSRPSVPPRLGNPR*
Ga0068853_1015156592	3300005539	Corn Rhizosphere	MFSLALFGPFDPDPVERRRPPRRGDGRVDSRPSVPPRLGNPRDAVQS
Ga0068866_101516182	3300005718	Miscanthus Rhizosphere	MFSLALFGPFDPDPVERRRPPRRGDGRVDSRPSVPPRFGLR*
Ga0068870_107958052	3300005840	Miscanthus Rhizosphere	MFSYALFGPADPDPVERRRPRRRGDQRVDSRPSIPARLGRS*
Ga0081455_103303562	3300005937	Tabebuia Heterophylla Rhizosphere	MFSFTLFGPFDPDPVERRRPRRRGVVRVDSRPSVPPRLGRS*
Ga0075428_1007401012	3300006844	Populus Rhizosphere	MLSFALFGPLDPDPVERRRPRRRGDGRVDVRPSAPARMVRA*
Ga0079216_112106782	3300006918	Agricultural Soil	MFSYALFGPLDPDPVERRRPRRRGDGRIDVRPSAPERLARG*
Ga0079218_103145572	3300007004	Agricultural Soil	MFSYALFGPLDPDPVERRRPRKRGDGRVDVRPSAPERLARG*
Ga0111539_101103273	3300009094	Populus Rhizosphere	MLSFALFGPLDPDPVEHRRPRRRGDGRVDVRPSAPARMVRA*
Ga0105247_101836902	3300009101	Switchgrass Rhizosphere	MFSLALFGPFDPDPVERRRPPRRGDGRVDSRPSVPLRFGLR*
Ga0114129_110444662	3300009147	Populus Rhizosphere	MLSFALFGPMDPDPVERRRPTRGRDARIDSRPSVPPRLVRS*
Ga0105092_107143452	3300009157	Freshwater Sediment	MFSYALFGPFDPDPVERRPPRRRGDGRVDSRPPVPRL
Ga0105249_106395071	3300009553	Switchgrass Rhizosphere	HTMFSLALFGPFDPDPVERRRPRRRGDGRVDSRPSIPPSGGPR*
Ga0131092_1000142347	3300009870	Activated Sludge	MFSFALFGPFDPDPVERRPRGRRGDGRVDARPSVPPRLGPR*
Ga0131077_100057143	3300009873	Wastewater	MFSLALFGPFDPDPVERRRPPRRGDGRVDSRPSVPPRSGAR*
Ga0131077_101226832	3300009873	Wastewater	MFSLALFGPFDPDPVERRRPRRRGDGRVDSRPSVPPALGPR*
Ga0131077_113530152	3300009873	Wastewater	MFSFALFGPFDPDPVERRPRRRRRGDGRVDSRPSVPPGSGPR*
Ga0126377_100316352	3300010362	Tropical Forest Soil	MFSFTLFGPFDPDPVERRRPRRRDVVRVDSRPSVPPRLGRS*
Ga0126377_102783342	3300010362	Tropical Forest Soil	MFSYALFGPFDPDPVDRLRPRRHGDARVDSRPSVPPRIRRSRA*
Ga0134125_106248542	3300010371	Terrestrial Soil	MFSLALFGPFDPDPVERRRPRRRGDGGRVDSRPSIPPRGGTR*
Ga0134125_129627372	3300010371	Terrestrial Soil	MFSLALFGPFDPDPVERRRPPRRGDGRVDSRPSVPP
Ga0105239_103469211	3300010375	Corn Rhizosphere	TMFSLALFGPFDPDPVERRRPRRRGDGRVVSRPSVPPSGGPR*
Ga0134124_101545911	3300010397	Terrestrial Soil	GRKEHTMFSLALFGPFDPDPVERRRPRRRGDGRVDSRPSIPPSGGPR*
Ga0134127_126873651	3300010399	Terrestrial Soil	AEGKEHTMFSLALFGPFDPDPVERRRPRRRGDGRVDSRPSIPPSGGPR*
Ga0126317_100731261	3300011332	Soil	MFSLALFGPFDPDPVERRRPRRRGDGRVDSRPSIPPRGGTR*
Ga0137424_10956152	3300011412	Soil	MFSYALFGPLDPDPVERRRPRRRGDGRIDIRPSAPERLARG*
Ga0136621_10228553	3300012092	Polar Desert Sand	MFSSALFGPFDPDPSERRRPPRRRADGRIDSRPSVPDRIRRG*
Ga0136632_100381433	3300012093	Polar Desert Sand	MFSSALFGPFDPDPSEPRRPPRRRGDTRIDSRPSVPDRIRRG*
Ga0157289_102038291	3300012903	Soil	QMFSLALFGPFDPDPVERRRPPRRGDGRVDSRPSVPPRLGNPR*
Ga0164241_101836842	3300012943	Soil	MFSLALFGPFDPDPVERRRPRRRGDGRVDSRPAVPPRGGTR*
Ga0164301_100237863	3300012960	Soil	MFSLALFGPFDPDPVERRRPRRRGDGRVDSRPSSPPSGGPR*
Ga0164302_117757161	3300012961	Soil	LFGPFDPDPVERRRPRRRGDGRVGSRPSLPPSGGPR*
Ga0164308_105730593	3300012985	Soil	MFSLALFGPFDPDPVERRRPRRRGDGRVDSRPSVPPTGGPR
Ga0075327_10379592	3300014272	Natural And Restored Wetlands	MMFSFALFGPLDPDPVERRRPRRRGDARPDVRPSAPARLVRG*
Ga0075310_10281243	3300014302	Natural And Restored Wetlands	MFSFALFGPLDPDPVERRRPRRRGDARPDVRPSAPAR
Ga0075331_10147233	3300014310	Natural And Restored Wetlands	MFSFALFGPLDPDPVERRRPRRRGDARPDVRPSAPARLVRG*
Ga0075342_10794382	3300014320	Natural And Restored Wetlands	MFSFALFGPLDPDPVERRRPRRRGDTRPDVRPSAPASLVRG*
Ga0163163_107564042	3300014325	Switchgrass Rhizosphere	MFSLALFGPFDPDPVERRRPRRRGDGRVDSRHSVPPRGGTR*
Ga0132258_100906606	3300015371	Arabidopsis Rhizosphere	MFSLALFGPFDPDPVERRRPPRRGDGRVDSRPSVPPRFGRR*
Ga0132258_100952768	3300015371	Arabidopsis Rhizosphere	MFSLALFGPFDPDPVERRPTRRKGDGRVDSRPSVPPRFGAR*
Ga0132258_105252764	3300015371	Arabidopsis Rhizosphere	MLSFALFGPLDPDPVERRRPRRRGDGRVDVRPSAPARMVRL*
Ga0180121_103975672	3300017695	Polar Desert Sand	MFSSALFGPFDPDPSERRRPVRRRGDGRIDARPSTPDRIVRGF
Ga0183260_100167442	3300017787	Polar Desert Sand	MFSSALFGPFDPDPSERRRPVRRRGDGRTDARPSTPDRLVRGF
Ga0183260_100305972	3300017787	Polar Desert Sand	MFSSALFGPFDPDPSERRRPPRRRGDGRIDSRPSAPDRILRG
Ga0136617_102235702	3300017789	Polar Desert Sand	MFSSALFGPFDPDPSERRRPPRRRGDGRIDSRPSVPDLIRRG
Ga0190266_100243402	3300017965	Soil	MFSYALFGPADPDPVERRRPRRRGDQRVDSRPSIPARLGRS
Ga0190266_101896272	3300017965	Soil	MLSFALFGPLDPDPVERRRPRRRGDGRVDVRPSAPARMVRA
Ga0190268_100532293	3300018466	Soil	MFSYALFGPLDPDPVERRRPRRRGDGRIDIRPSAPDRLARG
Ga0190268_109872811	3300018466	Soil	AERSTMFSYALFGPVDPDPVERRRPHRRGDQRVDGRPSVPARLERG
Ga0190274_101496023	3300018476	Soil	MFSYALFGPLDPDPVERRRPRRRGDGRVDIRPSAPERLARG
Ga0190274_103924482	3300018476	Soil	MFSYALFGPLDPDPVERRRPRRRGDGRVDVRPSAPERLARG
Ga0190274_111936192	3300018476	Soil	MFSYALFGPADPDPVERKRPRRRGDQRVDSRPSIPARLGRS
Ga0190271_100025819	3300018481	Soil	MFSYALFGPFDPDPVERRRPRRQGDTRVDVRPSAPARLGRD
Ga0190271_101964922	3300018481	Soil	MFSFALFGPLDPDPVERRRPRKRGDSRVDVRPSAPERLARG
Ga0173481_100046072	3300019356	Soil	MFSLALFGPFDPDPVERRRPPRRGDGRVDSRPSVPPRLGNPR
Ga0173481_100105673	3300019356	Soil	MFSLALFGPFDPDPVERRRPRRRGDGRVDSRPSIPPSGGPR
Ga0173479_100238972	3300019362	Soil	MFSLALFGPFDPDPVERRRPRRRGDGRVDSRPSVPPRGGTR
Ga0206352_110270982	3300020078	Corn, Switchgrass And Miscanthus Rhizosphere	MFSFALFGPFDPDPVERRRPRRRGDGRVDSRPSVP
Ga0210380_103594102	3300021082	Groundwater Sediment	MFSYALFGPLDPDPVERRRPRRRGDGRIDIRPSAPERLARG
Ga0247788_10012113	3300022901	Soil	MFSLALFGPFDPDPVERRRPPRRGDGRIDSRPSVPPRLGNPR
Ga0247802_10195961	3300023077	Soil	LALFGPFDPDPVERRRPRRRGDGRVDSRPSIPPSGGPR
Ga0247754_10040644	3300023102	Soil	MFSFALFGPFDPDPVERRRPRRRGDGRVDSRPSVPPRGGTR
Ga0247765_10351241	3300023268	Plant Litter	MFSFALFGPFDPDPVERRRPRRRGDGRVDSRPSVPPSGGPR
Ga0247794_100722051	3300024055	Soil	AEGRKEHTMFSLALFGPFDPDPVERRRPRRRGDGRVDSRPSIPPSGGPR
Ga0210076_10453702	3300025567	Natural And Restored Wetlands	MFSLALFGPFDPDPVERRRPPRRGDGRVDSRPSVPPRLGNAR
Ga0207643_100920942	3300025908	Miscanthus Rhizosphere	MFSLALFGPFDPDPVERRRPVRRGDGRVDSRPSVPPRFGLR
Ga0207659_101359672	3300025926	Miscanthus Rhizosphere	MFSLALFGPFDPDPVERRRPPRRGDGRVDSRPSVPPRFGLR
Ga0207686_106948022	3300025934	Miscanthus Rhizosphere	MFSLALFGPFDPDPVERRRPRRRGDGRVDSRPSIPP
Ga0207669_110275302	3300025937	Miscanthus Rhizosphere	MFSLALFGPFDPDPVERRRPRRRGDGRVDSRPSIPPS
Ga0207711_101064623	3300025941	Switchgrass Rhizosphere	MFSLALFGPFDPDPVERRRPARRGDGRVDSRPSVPPRFGLR
Ga0207661_102923651	3300025944	Corn Rhizosphere	SLALFGPFDPDPVERRRPRRRGDGRVDSRPSIPPSGGPR
Ga0207658_104921893	3300025986	Switchgrass Rhizosphere	FSLALFGPFDPDPVERRRPRCRGDGRVDSRPSVPPRGGTR
Ga0207703_103974611	3300026035	Switchgrass Rhizosphere	RRKEHTMFSLALFGPFDPDPVERRRPRRRGDGRVDSRPSIPPSGGPR
Ga0208911_10029122	3300026051	Natural And Restored Wetlands	MFSFALFGPLDPDPVERRRPRRRGDARPDVRPSAPARLVRG
Ga0207708_110120991	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	MFSLALFGPFDPDPVERRRPPRRGDGRVDSRPSVPPRFGL
Ga0207702_107150951	3300026078	Corn Rhizosphere	FSLALFGPFDPDPVERRRPRRRGDGRVDSRPSIPPSGGPR
Ga0208637_10064661	3300027401	Soil	LFGPFDPDPVERRRPRRRGDGRVDSRPSVPPTGGPR
Ga0209486_101956062	3300027886	Agricultural Soil	MFSYALFGPLDPDPVERRRPRKRGDGRVDVRPSAPERLARG
Ga0268266_101277801	3300028379	Switchgrass Rhizosphere	LFGPFDPDPVERRRPRRRGDGRVDSRPSIPPSGGPR
Ga0247828_111919042	3300028587	Soil	FGPFDPDPVERRRPRRRGDGRVDSRPSIPPSGGPR
Ga0247818_106151662	3300028589	Soil	MFSYALFGPIDPDPVERRRPRRRGDSRIDIRPSAPERLARG
Ga0247822_110584272	3300028592	Soil	MFSYALFGPLDPDPVERRRPGRRGDGRVDVRPSAPKRLARG
Ga0247820_100871342	3300028597	Soil	MFSYALFGPIDPDPVERRRPRRRGDSRVDIRPSAPERLARG
Ga0307281_103472122	3300028803	Soil	MFSLALFGPFDPDPVERRPPRRRGDGRVDSRPSVPLRLGRR
Ga0247827_110609982	3300028889	Soil	LFGPIDPDPVERRRPRRRGDSRIDIRPSAPERLARG
Ga0247826_100339243	3300030336	Soil	MFSYALFGPLDPDPVERRRPRRRGDGRIDVRPSAPERLARG
Ga0247826_101170912	3300030336	Soil	MLSFALFGPLDPDPIERRRPRRRGDGRVDVRPSAPARMVRA
Ga0247826_109958141	3300030336	Soil	RKEHPMFSYALFGPLDPDPVERRRPRRRGDGRVDIRPSAPERLARG
Ga0247826_113292252	3300030336	Soil	GLRPELTEGRKEHTMFSLALFGPFDPDPVERRRPRRRGDGRVDSRPSVPPSGGPR
Ga0307408_1018254561	3300031548	Rhizosphere	MLSFALFGPMDPDPVERRRPTRGRDARIDSRPSVPPRLVRS
Ga0310907_103071422	3300031847	Soil	MLSFALFGPLDPDPVERRRPRRRGDGRVDVRPSAPARMVRL
Ga0308175_1032876152	3300031938	Soil	MEERSTMFSLALFGPFDPDPVERRRPRRRGDGGRVDSRPSIPPRGGTR
Ga0310890_112511692	3300032075	Soil	EHTMFSLALFGPFDPDPVERRRPRRRGDGRVDSRPSIPPSGGPR
Ga0247829_104686441	3300033550	Soil	MFSYALFGPLDPDPVERRRPRRRGDGRIDVRPSAPE

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F079756

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences