Metagenome / Metatranscriptome Family F079752

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F079752
Family Type	Metagenome / Metatranscriptome
Number of Sequences	115
Average Sequence Length	64 residues
Representative Sequence	MSDVVLYVIGGLVLYQAYVTIRVVRSKSHTPAQKRRHFLFIWLVPFIGAAMALADLATKDRG
Number of Associated Samples	99
Number of Associated Scaffolds	115

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	35.96 %
% of genes near scaffold ends (potentially truncated)	24.35 %
% of genes from short scaffolds (< 2000 bps)	83.48 %
Associated GOLD sequencing projects	93
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.49

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (77.391 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil (30.435 % of family members)
Environment Ontology (ENVO)	Unclassified (43.478 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Subsurface (non-saline) (35.652 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 58.89% β-sheet: 0.00% Coil/Unstructured: 41.11%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.49
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.49
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 115 Family Scaffolds
PF13417	GST_N_3	6.96
PF01872	RibD_C	4.35
PF00291	PALP	4.35
PF06983	3-dmu-9_3-mt	2.61
PF01527	HTH_Tnp_1	2.61
PF07883	Cupin_2	1.74
PF01810	LysE	1.74
PF00083	Sugar_tr	1.74
PF13508	Acetyltransf_7	1.74
PF08592	Anthrone_oxy	1.74
PF04909	Amidohydro_2	1.74
PF02776	TPP_enzyme_N	1.74
PF01381	HTH_3	1.74
PF01661	Macro	1.74
PF00583	Acetyltransf_1	1.74
PF01939	NucS	0.87
PF04828	GFA	0.87
PF00916	Sulfate_transp	0.87
PF10335	DUF294_C	0.87
PF13683	rve_3	0.87
PF01923	Cob_adeno_trans	0.87
PF08241	Methyltransf_11	0.87
PF00202	Aminotran_3	0.87
PF00857	Isochorismatase	0.87
PF13669	Glyoxalase_4	0.87
PF13193	AMP-binding_C	0.87
PF03009	GDPD	0.87
PF02653	BPD_transp_2	0.87
PF02685	Glucokinase	0.87
PF07885	Ion_trans_2	0.87
PF09980	DUF2214	0.87
PF00005	ABC_tran	0.87
PF01323	DSBA	0.87
PF08668	HDOD	0.87
PF13177	DNA_pol3_delta2	0.87
PF04191	PEMT	0.87
PF03473	MOSC	0.87
PF13302	Acetyltransf_3	0.87
PF00043	GST_C	0.87
PF01738	DLH	0.87
PF03681	Obsolete Pfam Family	0.87
PF00581	Rhodanese	0.87
PF04993	TfoX_N	0.87
PF03724	META	0.87
PF01925	TauE	0.87

COG ID	Name	Functional Category	% Frequency in 115 Family Scaffolds
COG0262	Dihydrofolate reductase	Coenzyme transport and metabolism [H]	4.35
COG1985	Pyrimidine reductase, riboflavin biosynthesis	Coenzyme transport and metabolism [H]	4.35
COG3865	Glyoxalase superfamily enzyme, possible 3-demethylubiquinone-9 3-methyltransferase	General function prediction only [R]	2.61
COG2764	Zn-dependent glyoxalase, PhnB family	Energy production and conversion [C]	2.61
COG2110	O-acetyl-ADP-ribose deacetylase (regulator of RNase III), contains Macro domain	Translation, ribosomal structure and biogenesis [J]	1.74
COG1637	Endonuclease NucS, RecB family	Replication, recombination and repair [L]	0.87
COG3791	Uncharacterized conserved protein	Function unknown [S]	0.87
COG3187	Heat shock protein HslJ	Posttranslational modification, protein turnover, chaperones [O]	0.87
COG3070	Transcriptional regulator of competence genes, TfoX/Sxy family	Transcription [K]	0.87
COG2252	Xanthine/guanine/uracil/vitamin C permease GhxP/GhxQ, nucleobase:cation symporter 2 ( NCS2) family	Nucleotide transport and metabolism [F]	0.87
COG2233	Xanthine/uracil permease	Nucleotide transport and metabolism [F]	0.87
COG1535	Isochorismate hydrolase	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.87
COG1335	Nicotinamidase-related amidase	Coenzyme transport and metabolism [H]	0.87
COG0837	Glucokinase	Carbohydrate transport and metabolism [G]	0.87
COG0730	Sulfite exporter TauE/SafE/YfcA and related permeases, UPF0721 family	Inorganic ion transport and metabolism [P]	0.87
COG0659	Sulfate permease or related transporter, MFS superfamily	Inorganic ion transport and metabolism [P]	0.87
COG0625	Glutathione S-transferase	Posttranslational modification, protein turnover, chaperones [O]	0.87
COG0584	Glycerophosphoryl diester phosphodiesterase	Lipid transport and metabolism [I]	0.87
COG0435	Glutathionyl-hydroquinone reductase	Energy production and conversion [C]	0.87

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	77.39 %
Unclassified	root	N/A	22.61 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	77.39 %
Unclassified	root	N/A	22.61 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	77.39 %
Unclassified	root	N/A	22.61 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	63.48 %
Unclassified	root	N/A	22.61 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	22.61 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	13.91 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2.61 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	1.74 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1.74 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	22.61 %
unclassified Betaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria	5.22 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	4.35 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1.74 %
unclassified Gemmatimonadetes	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes	0.87 %
Oceanospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales	0.87 %
Xanthomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	0.87 %
Nitrosomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales	0.87 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	22.61 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	4.35 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	1.74 %
Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_65_14	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_65_14	0.87 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	0.87 %
Gallionellaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Gallionellaceae	0.87 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	0.87 %
unclassified Burkholderiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → unclassified Burkholderiales	0.87 %
Oxalobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae	0.87 %
Halomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Halomonadaceae	0.87 %
Xanthomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	0.87 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	22.61 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	4.35 %
Burkholderiales bacterium PBB5	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → unclassified Burkholderiales → Burkholderiales bacterium PBB5	0.87 %
Sorangiineae	suborder	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae	0.87 %
Halomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Halomonadaceae → Halomonas	0.87 %
Herbaspirillum	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Herbaspirillum	0.87 %
Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_65_14	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_65_14	0.87 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	0.87 %
Gallionellaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Gallionellaceae	0.87 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	0.87 %
Xanthomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	0.87 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	22.61 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	4.35 %
Halomonas olivaria	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Halomonadaceae → Halomonas → Halomonas olivaria	0.87 %
unclassified Herbaspirillum	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Herbaspirillum → unclassified Herbaspirillum	0.87 %
Polyangiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae → Polyangiaceae	0.87 %
Burkholderiales bacterium PBB5	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → unclassified Burkholderiales → Burkholderiales bacterium PBB5	0.87 %
Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_65_14	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_65_14	0.87 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	0.87 %
Gallionellaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Gallionellaceae	0.87 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	0.87 %
Xanthomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	0.87 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	22.61 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	4.35 %
Herbaspirillum sp. WGmk3	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Herbaspirillum → unclassified Herbaspirillum → Herbaspirillum sp. WGmk3	0.87 %
Sorangium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae → Polyangiaceae → Sorangium	0.87 %
Halomonas olivaria	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Halomonadaceae → Halomonas → Halomonas olivaria	0.87 %
Burkholderiales bacterium PBB5	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → unclassified Burkholderiales → Burkholderiales bacterium PBB5	0.87 %
Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_65_14	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_65_14	0.87 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	0.87 %
Gallionellaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Gallionellaceae	0.87 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	0.87 %
Xanthomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	0.87 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	22.61 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	4.35 %
Sorangium cellulosum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae → Polyangiaceae → Sorangium → Sorangium cellulosum	0.87 %
Herbaspirillum sp. WGmk3	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Herbaspirillum → unclassified Herbaspirillum → Herbaspirillum sp. WGmk3	0.87 %
Halomonas olivaria	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Halomonadaceae → Halomonas → Halomonas olivaria	0.87 %
Burkholderiales bacterium PBB5	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → unclassified Burkholderiales → Burkholderiales bacterium PBB5	0.87 %
Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_65_14	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_65_14	0.87 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	0.87 %
Gallionellaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Gallionellaceae	0.87 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	0.87 %
Xanthomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	0.87 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.87 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000953\|JGI11615J12901_11435881	Not Available	530	Open in IMG/M
3300002562\|JGI25382J37095_10072651	All Organisms → cellular organisms → Bacteria → Proteobacteria	1279	Open in IMG/M
3300002906\|JGI25614J43888_10003259	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	5096	Open in IMG/M
3300002908\|JGI25382J43887_10069604	All Organisms → cellular organisms → Bacteria → Proteobacteria	1902	Open in IMG/M
3300002912\|JGI25386J43895_10167116	All Organisms → cellular organisms → Bacteria → Proteobacteria	551	Open in IMG/M
3300004114\|Ga0062593_100275185	All Organisms → cellular organisms → Bacteria → Proteobacteria	1413	Open in IMG/M
3300004114\|Ga0062593_101129321	All Organisms → cellular organisms → Bacteria → Proteobacteria	816	Open in IMG/M
3300004480\|Ga0062592_102477608	All Organisms → cellular organisms → Bacteria → Proteobacteria	521	Open in IMG/M
3300004480\|Ga0062592_102507278	All Organisms → cellular organisms → Bacteria → Proteobacteria	519	Open in IMG/M
3300004643\|Ga0062591_101511687	All Organisms → cellular organisms → Bacteria → Proteobacteria	672	Open in IMG/M
3300005093\|Ga0062594_100921871	All Organisms → cellular organisms → Bacteria → Proteobacteria	828	Open in IMG/M
3300005176\|Ga0066679_10563684	Not Available	742	Open in IMG/M
3300005177\|Ga0066690_10552521	All Organisms → cellular organisms → Bacteria → Proteobacteria	771	Open in IMG/M
3300005178\|Ga0066688_10775838	All Organisms → cellular organisms → Bacteria → Proteobacteria	602	Open in IMG/M
3300005353\|Ga0070669_101252732	All Organisms → cellular organisms → Bacteria → Proteobacteria	641	Open in IMG/M
3300005438\|Ga0070701_10243218	All Organisms → cellular organisms → Bacteria → Proteobacteria	1083	Open in IMG/M
3300005440\|Ga0070705_101631556	All Organisms → cellular organisms → Bacteria → Proteobacteria	543	Open in IMG/M
3300005450\|Ga0066682_10626065	Not Available	672	Open in IMG/M
3300005451\|Ga0066681_10138758	All Organisms → cellular organisms → Bacteria → Proteobacteria	1422	Open in IMG/M
3300005467\|Ga0070706_100740710	All Organisms → cellular organisms → Bacteria → Proteobacteria	911	Open in IMG/M
3300005471\|Ga0070698_100029265	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	5716	Open in IMG/M
3300005518\|Ga0070699_101589524	All Organisms → cellular organisms → Bacteria → Proteobacteria	599	Open in IMG/M
3300005546\|Ga0070696_100415540	All Organisms → cellular organisms → Bacteria → Proteobacteria	1055	Open in IMG/M
3300005546\|Ga0070696_100580196	All Organisms → cellular organisms → Bacteria → Proteobacteria	902	Open in IMG/M
3300005549\|Ga0070704_101898350	All Organisms → cellular organisms → Bacteria → Proteobacteria	552	Open in IMG/M
3300005554\|Ga0066661_10804955	Not Available	550	Open in IMG/M
3300005558\|Ga0066698_10712718	All Organisms → cellular organisms → Bacteria → Proteobacteria	660	Open in IMG/M
3300005576\|Ga0066708_10330593	All Organisms → cellular organisms → Bacteria → Proteobacteria	978	Open in IMG/M
3300005598\|Ga0066706_10322709	All Organisms → cellular organisms → Bacteria → Proteobacteria	1219	Open in IMG/M
3300006031\|Ga0066651_10188384	All Organisms → cellular organisms → Bacteria → Proteobacteria	1090	Open in IMG/M
3300006046\|Ga0066652_100249661	All Organisms → cellular organisms → Bacteria → Proteobacteria	1553	Open in IMG/M
3300006844\|Ga0075428_102504975	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	528	Open in IMG/M
3300006845\|Ga0075421_100689001	All Organisms → cellular organisms → Bacteria → Proteobacteria	1189	Open in IMG/M
3300006845\|Ga0075421_101337714	All Organisms → cellular organisms → Bacteria	791	Open in IMG/M
3300006852\|Ga0075433_10467749	All Organisms → cellular organisms → Bacteria → Proteobacteria	1111	Open in IMG/M
3300006854\|Ga0075425_103027733	Not Available	513	Open in IMG/M
3300009090\|Ga0099827_10916615	All Organisms → cellular organisms → Bacteria	759	Open in IMG/M
3300009100\|Ga0075418_11986651	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	633	Open in IMG/M
3300009100\|Ga0075418_12198338	All Organisms → cellular organisms → Bacteria → Proteobacteria	602	Open in IMG/M
3300009137\|Ga0066709_101346472	All Organisms → cellular organisms → Bacteria → Proteobacteria	1043	Open in IMG/M
3300009147\|Ga0114129_10785080	All Organisms → cellular organisms → Bacteria	1216	Open in IMG/M
3300009156\|Ga0111538_13327312	Not Available	559	Open in IMG/M
3300009162\|Ga0075423_10492548	All Organisms → cellular organisms → Bacteria → Proteobacteria	1289	Open in IMG/M
3300009174\|Ga0105241_11591418	All Organisms → cellular organisms → Bacteria → Proteobacteria	632	Open in IMG/M
3300009176\|Ga0105242_11133882	Not Available	798	Open in IMG/M
3300009597\|Ga0105259_1004730	All Organisms → cellular organisms → Bacteria	2516	Open in IMG/M
3300009597\|Ga0105259_1084121	All Organisms → cellular organisms → Bacteria	740	Open in IMG/M
3300009609\|Ga0105347_1007123	All Organisms → cellular organisms → Bacteria → Proteobacteria	3944	Open in IMG/M
3300009610\|Ga0105340_1013275	All Organisms → cellular organisms → Bacteria → Proteobacteria	3244	Open in IMG/M
3300009610\|Ga0105340_1280705	All Organisms → cellular organisms → Bacteria	721	Open in IMG/M
3300009678\|Ga0105252_10034359	All Organisms → cellular organisms → Bacteria → Proteobacteria	1869	Open in IMG/M
3300009678\|Ga0105252_10123694	All Organisms → cellular organisms → Bacteria	1058	Open in IMG/M
3300010391\|Ga0136847_13160683	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	758	Open in IMG/M
3300010399\|Ga0134127_10187951	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_65_14	1911	Open in IMG/M
3300010399\|Ga0134127_10585929	Not Available	1141	Open in IMG/M
3300010400\|Ga0134122_10047600	All Organisms → cellular organisms → Bacteria	3283	Open in IMG/M
3300010403\|Ga0134123_10465910	All Organisms → cellular organisms → Bacteria → Proteobacteria	1179	Open in IMG/M
3300011271\|Ga0137393_11147673	All Organisms → cellular organisms → Bacteria → Proteobacteria	660	Open in IMG/M
3300011403\|Ga0137313_1043567	Not Available	768	Open in IMG/M
3300011405\|Ga0137340_1015626	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	1379	Open in IMG/M
3300011414\|Ga0137442_1056322	Not Available	803	Open in IMG/M
3300011420\|Ga0137314_1072571	All Organisms → cellular organisms → Bacteria → Proteobacteria	837	Open in IMG/M
3300011420\|Ga0137314_1096884	All Organisms → cellular organisms → Bacteria	723	Open in IMG/M
3300011424\|Ga0137439_1087421	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Herbaspirillum → unclassified Herbaspirillum → Herbaspirillum sp. WGmk3	667	Open in IMG/M
3300011425\|Ga0137441_1024159	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1277	Open in IMG/M
3300011429\|Ga0137455_1087159	All Organisms → cellular organisms → Bacteria → Proteobacteria	907	Open in IMG/M
3300011429\|Ga0137455_1241635	Not Available	533	Open in IMG/M
3300011430\|Ga0137423_1036231	All Organisms → cellular organisms → Bacteria → Proteobacteria	1495	Open in IMG/M
3300011435\|Ga0137426_1011988	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	2015	Open in IMG/M
3300011441\|Ga0137452_1043710	All Organisms → cellular organisms → Bacteria	1414	Open in IMG/M
3300011443\|Ga0137457_1328230	Not Available	522	Open in IMG/M
3300011444\|Ga0137463_1003324	All Organisms → cellular organisms → Bacteria → Proteobacteria	5287	Open in IMG/M
3300012041\|Ga0137430_1008543	All Organisms → cellular organisms → Bacteria → Proteobacteria	2571	Open in IMG/M
3300012096\|Ga0137389_10717436	Not Available	859	Open in IMG/M
3300012142\|Ga0137343_1001816	All Organisms → cellular organisms → Bacteria → Proteobacteria	2431	Open in IMG/M
3300012172\|Ga0137320_1090767	Not Available	653	Open in IMG/M
3300012175\|Ga0137321_1071199	Not Available	771	Open in IMG/M
3300012211\|Ga0137377_10921892	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	805	Open in IMG/M
3300012231\|Ga0137465_1008094	All Organisms → cellular organisms → Bacteria → Proteobacteria	3003	Open in IMG/M
3300012231\|Ga0137465_1021513	All Organisms → cellular organisms → Bacteria → Proteobacteria	1882	Open in IMG/M
3300012232\|Ga0137435_1223751	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	574	Open in IMG/M
3300012668\|Ga0157216_10154991	All Organisms → cellular organisms → Bacteria	1102	Open in IMG/M
3300012922\|Ga0137394_11057198	Not Available	673	Open in IMG/M
3300012922\|Ga0137394_11366834	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	570	Open in IMG/M
3300013308\|Ga0157375_13640821	Not Available	512	Open in IMG/M
3300014864\|Ga0180068_1009689	All Organisms → cellular organisms → Bacteria	1373	Open in IMG/M
3300014876\|Ga0180064_1079380	All Organisms → cellular organisms → Bacteria → Proteobacteria	682	Open in IMG/M
3300015164\|Ga0167652_1037685	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	938	Open in IMG/M
3300015245\|Ga0137409_10929221	Not Available	706	Open in IMG/M
3300015256\|Ga0180073_1086341	Not Available	670	Open in IMG/M
3300018079\|Ga0184627_10040150	All Organisms → cellular organisms → Bacteria → Proteobacteria	2394	Open in IMG/M
3300018079\|Ga0184627_10056684	All Organisms → cellular organisms → Bacteria → Proteobacteria	2032	Open in IMG/M
3300018083\|Ga0184628_10052504	Not Available	2059	Open in IMG/M
3300018084\|Ga0184629_10049957	All Organisms → cellular organisms → Bacteria → Proteobacteria	1903	Open in IMG/M
3300018482\|Ga0066669_10530485	All Organisms → cellular organisms → Bacteria	1023	Open in IMG/M
3300019257\|Ga0180115_1286868	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae → Polyangiaceae → Sorangium → Sorangium cellulosum	561	Open in IMG/M
3300019356\|Ga0173481_10379721	All Organisms → cellular organisms → Bacteria	684	Open in IMG/M
3300019362\|Ga0173479_10602839	All Organisms → cellular organisms → Bacteria	575	Open in IMG/M
3300021081\|Ga0210379_10030823	All Organisms → cellular organisms → Bacteria → Proteobacteria	2075	Open in IMG/M
3300025922\|Ga0207646_10312251	Not Available	1420	Open in IMG/M
3300026297\|Ga0209237_1068711	Not Available	1678	Open in IMG/M
3300026319\|Ga0209647_1000086	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	75316	Open in IMG/M
3300026320\|Ga0209131_1073108	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1867	Open in IMG/M
3300026320\|Ga0209131_1225627	Not Available	818	Open in IMG/M
3300027513\|Ga0208685_1004660	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	3815	Open in IMG/M
3300027533\|Ga0208185_1165657	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	506	Open in IMG/M
3300027573\|Ga0208454_1036101	All Organisms → cellular organisms → Bacteria → Proteobacteria	1155	Open in IMG/M
3300031226\|Ga0307497_10027111	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Gallionellaceae	1833	Open in IMG/M
3300031576\|Ga0247727_10039389	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	6150	Open in IMG/M
3300031740\|Ga0307468_100685971	Not Available	853	Open in IMG/M
3300031740\|Ga0307468_100735532	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	831	Open in IMG/M
3300031892\|Ga0310893_10580238	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Halomonadaceae → Halomonas → Halomonas olivaria	511	Open in IMG/M
3300034113\|Ga0364937_139555	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → unclassified Burkholderiales → Burkholderiales bacterium PBB5	519	Open in IMG/M
3300034354\|Ga0364943_0339571	Not Available	573	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	87.83%
Host-Associated	Host-Associated	12.17%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	51.30%
Aquatic	Environmental → Aquatic	36.52%
Plants	Host-Associated → Plants	12.17%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	48.70%
Sediment	Environmental → Aquatic → Sediment	33.91%
Rhizosphere	Host-Associated → Plants → Rhizosphere	12.17%
Freshwater	Environmental → Aquatic → Freshwater	2.61%
Floodplain	Environmental → Terrestrial → Floodplain	1.74%
Cave	Environmental → Terrestrial → Cave	0.87%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	40.87%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	33.91%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	11.30%
Loam	Environmental → Terrestrial → Soil → Loam	7.83%
Sediment	Environmental → Aquatic → Freshwater → Sediment	1.74%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	1.74%
Lake	Environmental → Aquatic → Freshwater → Lake	0.87%
Unclassified	Environmental → Terrestrial → Cave → Unclassified	0.87%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.87%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	33.91%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	19.13%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	13.91%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	11.30%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	7.83%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	5.22%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	1.74%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	1.74%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	1.74%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	0.87%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.87%
Unclassified	Environmental → Terrestrial → Cave → Unclassified → Unclassified	0.87%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.87%

Habitat	Taxonomy	Distribution
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	30.43%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	10.43%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	8.70%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	8.70%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	7.83%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	6.09%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	5.22%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	3.48%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	3.48%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.61%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	1.74%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	1.74%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.74%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	1.74%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Sediment	0.87%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.87%
Biofilm	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Biofilm	0.87%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.87%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.87%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.87%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.87%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000953	Soil microbial communities from Great Prairies - Kansas Corn soil	Environmental	Open in IMG/M
3300002562	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cm	Environmental	Open in IMG/M
3300002906	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cm	Environmental	Open in IMG/M
3300002908	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cm	Environmental	Open in IMG/M
3300002912	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_40cm	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005176	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128	Environmental	Open in IMG/M
3300005177	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139	Environmental	Open in IMG/M
3300005178	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137	Environmental	Open in IMG/M
3300005353	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG	Host-Associated	Open in IMG/M
3300005438	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG	Environmental	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005450	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131	Environmental	Open in IMG/M
3300005451	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005554	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110	Environmental	Open in IMG/M
3300005558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147	Environmental	Open in IMG/M
3300005576	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157	Environmental	Open in IMG/M
3300005598	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155	Environmental	Open in IMG/M
3300006031	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Angelo_100	Environmental	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009597	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT299	Environmental	Open in IMG/M
3300009609	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT890	Environmental	Open in IMG/M
3300009610	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT700	Environmental	Open in IMG/M
3300009678	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT100	Environmental	Open in IMG/M
3300010391	Freshwater sediment microbial communities from Lake Superior, USA - Station SU-17. Combined Assembly of Gp0155404, Gp0155335, Gp0155336, Gp0155336, Gp0155403, Gp0155406	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300011399	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT842_2	Environmental	Open in IMG/M
3300011403	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT166_2	Environmental	Open in IMG/M
3300011405	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT400_2	Environmental	Open in IMG/M
3300011414	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT266_2	Environmental	Open in IMG/M
3300011420	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT199_2	Environmental	Open in IMG/M
3300011424	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT200_2	Environmental	Open in IMG/M
3300011425	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT244_2	Environmental	Open in IMG/M
3300011429	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT600_2	Environmental	Open in IMG/M
3300011430	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT600_2	Environmental	Open in IMG/M
3300011435	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT660_2	Environmental	Open in IMG/M
3300011441	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT513_2	Environmental	Open in IMG/M
3300011443	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT630_2	Environmental	Open in IMG/M
3300011444	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT800_2	Environmental	Open in IMG/M
3300012041	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT754_2	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012142	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT499_2	Environmental	Open in IMG/M
3300012172	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT366_2	Environmental	Open in IMG/M
3300012175	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT399_2	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012231	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT828_2	Environmental	Open in IMG/M
3300012232	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT100_2	Environmental	Open in IMG/M
3300012668	Arctic soils microbial communities. Combined Assembly of 23 SPs	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014864	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT231A'_16_10D	Environmental	Open in IMG/M
3300014876	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT200_16_10D	Environmental	Open in IMG/M
3300015164	Arctic soil microbial communities from a glacier forefield, Storglaci?ren, Tarfala, Sweden (Sample st-4b, rock/ice/stream interface)	Environmental	Open in IMG/M
3300015245	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015256	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT333_16_10D	Environmental	Open in IMG/M
3300018079	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_127_b1	Environmental	Open in IMG/M
3300018083	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5_b1	Environmental	Open in IMG/M
3300018084	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32_b1	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300019257	Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLT660_16_1Ra (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019356	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)	Environmental	Open in IMG/M
3300019362	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S104-311B-1 (version 2)	Environmental	Open in IMG/M
3300021081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32_coex redo	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026297	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_40cm (SPAdes)	Environmental	Open in IMG/M
3300026319	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cm (SPAdes)	Environmental	Open in IMG/M
3300026320	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm (SPAdes)	Environmental	Open in IMG/M
3300027513	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT890 (SPAdes)	Environmental	Open in IMG/M
3300027533	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT700 (SPAdes)	Environmental	Open in IMG/M
3300027573	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT100 (SPAdes)	Environmental	Open in IMG/M
3300031226	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_S	Environmental	Open in IMG/M
3300031576	Biofilm microbial communities from Wishing Well Cave, Virginia, United States - WW16-25	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031892	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D2	Environmental	Open in IMG/M
3300034113	Sediment microbial communities from East River floodplain, Colorado, United States - 7_s17	Environmental	Open in IMG/M
3300034354	Sediment microbial communities from East River floodplain, Colorado, United States - 23_s17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI11615J12901_114358812	3300000953	Soil	MSDNVLYVIVGLVFYQAYVTVRVARSKSFTPAQKKRHFLFIWLVPFIGAAMALADLAAKDRS*
JGI25382J37095_100726513	3300002562	Grasslands Soil	RFVRRGKTRTLDCMSDVVLYVIGGLVLYQAYVTIRVVRSKSHTPSQKRRHFLFIWLVPFIGAAMALADLATKDRG*
JGI25614J43888_100032594	3300002906	Grasslands Soil	MSDIIVYGIGGLVLYQAYVTVRLVRSKSFTPEQKWRQALFVWLVPFIGAAATLALLATHKESR*
JGI25382J43887_100696041	3300002908	Grasslands Soil	MSDVVLYVIGGLVLYQAYVTIRVVRSKSHTPSQKRRHFLFIWLVPFIGAAMALADLATKDRG*
JGI25386J43895_101671161	3300002912	Grasslands Soil	TLDCMSDVVLYVIGGLVLYQAYVTIRVVRSKSHTPSQKRRHFLFIWLVPFIGAAMALADLATKDRG*
Ga0062593_1002751854	3300004114	Soil	MSDIVLYVIGGLVFYQAYVTVRVARSKSHTPAQKKRHFLFIWLVPFIGAAMALADLAAKDPS*
Ga0062593_1011293211	3300004114	Soil	MSDIVIYSIGGLVLYQAYATIRVVRHKPYDAQKKRNQLLIIWLVPFIGAAAALAGLAPGGEAAARSEKKNR*
Ga0062592_1024776081	3300004480	Soil	SDIVLYVIGGLVFYQAYVTVRVARSKSHTPAQKKRHFLFIWLVPFIGAAMALADLAAKDPS*
Ga0062592_1025072782	3300004480	Soil	MSDIVLYGLGGLVFYQAYATIRVVRHKSYAAEKKRHQLLIIWLVPFIGAAIALAGLATDTDTSARP*
Ga0062591_1015116871	3300004643	Soil	FVCMSDIVLYGLGGLVFYQAYATIRVVRHKSYAAEKKRHQLLIIWLVPFIGAAIALAGLATDTDTSARP*
Ga0062594_1009218712	3300005093	Soil	MSDTVLYVIVGLVFYQAYVTVRVARSKSHTPAQKKRHFLFIWLVPFIGAAMALADLAAKDRG*
Ga0066679_105636841	3300005176	Soil	MSDVVLYVIGGLVLYQAYVTIRVVRSKSHTPAQKRRHFLFIWLVPFIGAAMALADLATKDRG*
Ga0066690_105525212	3300005177	Soil	MSDVVLYVIGGLVLYQAYVTIRVVRSKSHTPAQKRRHFLFIWLVPFIGAAMALADLAAKDRG*
Ga0066688_107758381	3300005178	Soil	MSDVVLYVIGGLVLYQAYVTIRVARSKSHTPTQKRRHFLFIWLVPFIGAAMALADL
Ga0070669_1012527322	3300005353	Switchgrass Rhizosphere	PTSGCTRRPRAVRAGAGEPRSLDCMSDTVLYVIVGLVFYQAYVTVRVARSKSHTPAQKRRHFLFIWLIPFIGAAMALADVAAKDPS*
Ga0070701_102432181	3300005438	Corn, Switchgrass And Miscanthus Rhizosphere	MPDIVLYVIVGLVFYQAYVTVRVARSKSHTPAQKRRHFLFIWLIPFIGAAMALADVAAKDPS*
Ga0070705_1016315562	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	DRMSDTVIYVLGGMMFYQAYVTIRVARHKPYTAAQKRRQYLFIWLIPFVGAAIALAALATDNSAPPGPKNPV*
Ga0066682_106260652	3300005450	Soil	MSDVALYVIGGLVLYQAYVTIRVVRSKSHTPAQKRRHFLFIWLVPFIGAAMALADLAPKDRG*
Ga0066681_101387582	3300005451	Soil	MSDVALYVIGGLVLYQAYVTIRVVRSKSHTPAQKRRHFLFIWLVPFLGAAMALADLAAKDRG*
Ga0070706_1007407101	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MSSDIVIYGLGGLMFFQAYVTVRIVRKKSYTSAQKRRQLLFVWLFPFVGAAIALAALATDDKNPGRPG*
Ga0070698_1000292655	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MSDIVLYVIVGLVFYQAYVTVRVVRSKSHTPAQKKRHFLFIWLVPFIGAAMALADLAPKDPS*
Ga0070699_1015895242	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	SAQRAWPRTLDCMSDIVLYVIGGLVFYQAYVTVRVARSKSHTPAQKKRHFLFIWLVPFIGAAMALADLAAKDPS*
Ga0070696_1004155402	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	MPDIVLYVIVGLVFYQAYVTVRVARSKSHTPAQKKRHFLFIWLVPFIGAAMALADLAAKDPS*
Ga0070696_1005801964	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	MSDIVLYGLAGLMFYQAYVTIRVVRHKPYTSEKKRQQLLIIWLVPLLGAAMA
Ga0070704_1018983501	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	AVRAGAGEPRSLDCMSDTVLYVIVGLVFYQAYVTVRVARSKSHTPAQKKRHFLFIWLVPFIGAAMALADLAAKDRG*
Ga0066661_108049552	3300005554	Soil	MSDVVLYVIGGLVLYQAYVTIRVVRSKSHTPSQKRRHFLFIWLVPFIGAAMALADLASKDRG*
Ga0066698_107127182	3300005558	Soil	MSDVVLYVIGGLVLYQAYVTIRVVRSKSHTPAQKRRHFLFIWLVPFIGAAMALADLAPKDRG*
Ga0066708_103305931	3300005576	Soil	AAPQTSTLDCMSDVALYVIGGLVLYQAYVTIRVVRSKSHTPAQKRRHFLFIWLVPFLGAAMALADLAARDRG*
Ga0066706_103227091	3300005598	Soil	MSDVVLYVIGGLVLYQAYVTIRVVRSKSHTPSQKRRHFLFIWLVPFIGAAMALADLAPKDRG*
Ga0066651_101883842	3300006031	Soil	MSDVALYVIGGLVLYQAYVTIRVVRSKSHSPSQKRRHFLFIWLVPFIGAAMALADLAAKDRG*
Ga0066652_1002496613	3300006046	Soil	MRRGKARTVDCMSDIVLYVLGGLVFFQAYVTVRVARSKSHTPAQKKRHFLFIWLVPFIGAAMALADLAVKDPS*
Ga0075428_1025049752	3300006844	Populus Rhizosphere	MSDVALYVIGGLVFYQAYVTVRVARSKSHTPAQKKRHFLFIWLVPFIGAAMALADLAAKDPS*
Ga0075421_1006890011	3300006845	Populus Rhizosphere	MSDIIIYGLGGLIFYQAYVTIRVVRSKSFPSEKKWRQALFIWLVPFVGAAAT
Ga0075421_1013377141	3300006845	Populus Rhizosphere	QNSRYEKVNCMSDEILVYGLGGLLFYQTYVTIRVLRHKAYTPAQKRRQLLFIWLVPFIGAAIALAALATDGDTDSVPREPNDRG*
Ga0075433_104677493	3300006852	Populus Rhizosphere	MSDTVLYVLVGLIFYQAYVTVRVVRNKSIDAAQKRRHLLRIWLVPFVGAAMALAELERDK
Ga0075425_1030277332	3300006854	Populus Rhizosphere	MSDTVLYVLVGLIFYQAYVTVRVVRNKSIDAAQKRRHLLLIWLVPFIGAAMALAELERDK
Ga0099827_109166151	3300009090	Vadose Zone Soil	MSDVILYVIGGLVLYQAYVTIRVMRSKSHTPAQKRRHFLFIWLVPFMGAAMALADLAAKDRG*
Ga0075418_119866512	3300009100	Populus Rhizosphere	MSDVVLYVLVGLVFYQTYVSVRVARSKSHTPAQKKRHFLFIWLVPFIGAAMALADLAAKDRS*
Ga0075418_121983382	3300009100	Populus Rhizosphere	MSDLVLYTLMGLIFYQAYVTVRVVRHKPYTPEKKQQQLLLIWLVPLLGAAIALAGLATDKE*
Ga0066709_1013464723	3300009137	Grasslands Soil	MSTNFSDAVLYVIGGLVLYQAYVTIRVVRSKSHTPAQKRRHFLFIWLVPFIGAAMALADLATKDRG*
Ga0114129_107850802	3300009147	Populus Rhizosphere	MSDIVLYVIVGLVFYQAYVTVRVARSKSHTPAQKKRHFLFIWLVPFIGAALALADLAAKDPS*
Ga0111538_133273122	3300009156	Populus Rhizosphere	MSDEILVYGLGGLLFYQTYVTIRVLRHKAYTPAQKRRQLLFIWLVPFIGAAIALAALATDGDTDSVPREPNDRG*
Ga0075423_104925481	3300009162	Populus Rhizosphere	LVGLIFYQAYVTVRVVRNKSIDAAQKRRHLLRIWLVPFVGAAMALAELERDK*
Ga0105241_115914182	3300009174	Corn Rhizosphere	MSDTVLYVIVGLVFYQAYVTVRVARSKSFTPAQKKRHFLFIWLVPFIGAAMALADLAAK
Ga0105242_111338822	3300009176	Miscanthus Rhizosphere	MSDTVLYVIVGLVFYQAYVTVRVARSKSHTPAQKKRHFLFIWLVPFIGAAMVLADLAAKDRG*
Ga0105259_10047303	3300009597	Soil	MSDIALFGLGGLMFFQAYVTIRVVRHKHYTSEKKRQQLLIIWLVPFVGAAIALAGLDRD*
Ga0105259_10841212	3300009597	Soil	MSDVVLYVLGGLMFYQGYVTIRVARSKSHTPAQKRRHLLFIWLVPFIRAAMALADLAAKDRG*
Ga0105347_10071232	3300009609	Soil	MSDIVLYGLGGLMFFQAYVTIRVVRHKSYTSEKKRHQVLIIWLVPFIGAALALAGLDRD*
Ga0105340_10132754	3300009610	Soil	MSDEILIYGLGGLMFFQAYVTVRVVRHKPYTAAQKRRQLLFVWLIPFFGAAVALAALATNNNKDSAPHQPK*
Ga0105340_12807052	3300009610	Soil	MSDIVLYGLVGLMFYQAYVTIRVVRSKSYTPRQKWRQSLFIWLVPFFGAP*
Ga0105252_100343592	3300009678	Soil	MSDIDIVIYSLGGLMFFQAYVTIRVVRHKSYTSEKKRHQLLIIWLVPFVGAAIALAGLATDGET*
Ga0105252_101236942	3300009678	Soil	MSDEILIYGFGGLMFYQAYVTFRVLRHKSYTSAQKQRQLLFIWLVPFIGAAIALAALATDSSTDSVSHDRRR*
Ga0136847_131606832	3300010391	Freshwater Sediment	MSDNVLYGLVGLMFYQVYVTIRVVRSKSHTPRQKWRQSLFIWLVPFVGAAITLAALATDGQIPVRPGK*
Ga0134127_101879513	3300010399	Terrestrial Soil	MSDTVIYVLGGMMFYQAYVTIRVARHKPYTAAQKRRQYLFIWLIPFVGAAIALAALATDNSAPPGPKNPV*
Ga0134127_105859292	3300010399	Terrestrial Soil	MSDIVIYGLGGLMFFQAYVTIRVVRHKSFTSEKKRHQLLIIWLVPFIGAAIVLAGLDPD*
Ga0134122_100476003	3300010400	Terrestrial Soil	MSDAVLYVIVGLVFYQAYVTVRVARSKSFTPAQKKRHFLFIWLVPFIGAAMALADLAAKDRG*
Ga0134123_104659103	3300010403	Terrestrial Soil	MSDNVLYLIGGLVFFQAYVTVRVARSKSHAPAQKKRHFLFIWLVPFIGAAMALADLAVKDPDS*
Ga0137393_111476732	3300011271	Vadose Zone Soil	MSDVVLYVIGGLVLYQAYVTIRVVRSKSHTPAQKRRHLLFVWLVPFIGAAMALADLAAKDRG*
Ga0137466_10256691	3300011399	Soil	AYVTFRVLRHKSYTSAQEQRQLLFIWLVPFIGAAIALAALSTDSSTDSVSHDE*
Ga0137313_10435671	3300011403	Soil	MSDIALFGLGGLMFFQAYVTIRVVRHKPYTSEKKRQQLLIIWLVPFVGAAIALAGLDRD*
Ga0137340_10156261	3300011405	Soil	MSDIDIVIYSLGGLMFFQAYVTIRVVRHKPYTSEKKRQQLLIIWLVPFVGAAIALAGLDRD*
Ga0137442_10563221	3300011414	Soil	MSDVVLYVLAGLMFYQVYVTIRVARKKSLTPAQKRRHFLFIWLVPFIGAAMALADLAAKDRG*
Ga0137314_10725712	3300011420	Soil	MSDEILIYGFGGLMFYQAYVTFRVLRHKAYTSAQKQRQLLFIWLVPFIGAAIALAALATDGNTDSVSHDERR*
Ga0137314_10968841	3300011420	Soil	MSDIDIVIYSLGGLMFFQAYVTVRVVRHKSYTSEKKRQQLLITWLVPFVGAAMALAGIAADSEPPVRK*
Ga0137439_10874212	3300011424	Soil	MSDIIIYGLGGLMFYQAYVTIRVVRHKPYTSEKKRQQLLIIWLVPFVGAAIARTRA*
Ga0137441_10241592	3300011425	Soil	MSDEILIYGFGGLMFYQAYVTFRVLRHKAYTSAQKQRQLLFIWLVPFIGAAIALAALATDSSTDSVSHDGRR*
Ga0137455_10871592	3300011429	Soil	MSDEILIYGLGGLMFFQAYTTVRVVRHKPYTAAQKRRQLLFVWLIPFFGAAVALAALATDNNKDSAPHQPK*
Ga0137455_12416351	3300011429	Soil	DRMPDFVVYGLAGLMFYQAYVTIRVVRSKSHTSAQKRRHLLFIWLVPFVGAAMALADLATDKKDRV*
Ga0137423_10362311	3300011430	Soil	MSDVVLYVLGGLMFYQGYVTIRVARSKSHTPAQKRRHLLFIWLVPFIGAAMALADLAAKDRG*
Ga0137426_10119882	3300011435	Soil	MSDTDIVIYSLGGLMFFQAYVTIRVVRHKSYTSEKKRHQLLIIWLVPFVGAAIALAGLATDGET*
Ga0137452_10437103	3300011441	Soil	GGLMFYQVYVTVRVVRHKAYTSAQKRRQLLFIWLVPFVGAAIALAALATENNKDSAPHDGPR*
Ga0137457_13282301	3300011443	Soil	TLRMRRGKTRTLDCMSDIALFGLGGLMFFQAYVTIRVVRHKPYTSEKKRQQLLIIWLVPFVGAAIALAGLDRD*
Ga0137463_10033243	3300011444	Soil	MSDIAIYGLGGLMFFQAYVTIRVVRHKSYTSEKKRHQLLIIWLVPFVGAAIALSGLATDGETRD*
Ga0137430_10085433	3300012041	Soil	MSDEILIYGFGGLMFYQAYVTFRVLRHKAYTSAQKQRQLLFIWLVPFIGAAIALAALATDGSTDSVSHDGRR*
Ga0137389_107174362	3300012096	Vadose Zone Soil	QRAKTGTLDCMSDVVLYVIGGLVLYQAYVTIRVVRSKSHTPAQKRRHFLFIWLVPFMGAAMALADLAAKDRG*
Ga0137343_10018164	3300012142	Soil	MSDIALFGLGGLMFFQAYVTIRVVRHKSYTSEKKRQQLLIIWLVPFVGAAIALAGLDRD*
Ga0137320_10907671	3300012172	Soil	MSDEILIYGFGGLMFYQAYVTFRVLRHKAYTSAQKQHQLLFIWLVPFIGAAIA
Ga0137321_10711992	3300012175	Soil	MSDEILIYGFGGLMFYQAYVTFRVLRHKSYTSAQKQRQLLFIWLVPFIGAAIALAALATDSSTHSVSHDGRR*
Ga0137377_109218922	3300012211	Vadose Zone Soil	MSDVVLYVIGGLVLYQAYVTIRVVRSKSHTPAQKRRHFLFIWLVPFLGAAMALADLAAKDRG*
Ga0137465_10080941	3300012231	Soil	MSDIALFGLGGLMFFQAYVTIRVVRHKPYTSEKKRQQLLIIWLVPFVGAAIAL
Ga0137465_10215133	3300012231	Soil	MSDEILIYGLGGLMFYQAYVTVRVVRHKPYTAAQKRRQLLFVWLIPFFGAAVALAALATNNNKDSAPHQPK*
Ga0137435_12237511	3300012232	Soil	MSDIVLYGLAGLMFYQAYVTIRVVRHKPYTSEKKRQQLLIIWLVPFIGAALALAGLDRD*
Ga0157216_101549912	3300012668	Glacier Forefield Soil	MSDIVLYGLCGLMFYQAYVSVRVVRHKAYTPEKKRERLLIIWLVPLIGAAIALAGLTAEKETSE*
Ga0137394_110571982	3300012922	Vadose Zone Soil	MSDIVIYGLGGLMFFQAYVTIRVVRHKSYTSEKKRHQLLIIWLVPFIGAAIALAGLDRD*
Ga0137394_113668342	3300012922	Vadose Zone Soil	MSDTVIYGLGGLMFFQAYVTVRVVRKKSYTQAQRRRQLLFIWLVPFVGAAIALAALATE*
Ga0157375_136408211	3300013308	Miscanthus Rhizosphere	MSDTVLYVIVGLVFYQAYVTVRVARSKSHTPAQKKRHFLFIWLVPFIGAAMALADLAAKVRLRQL
Ga0180068_10096893	3300014864	Soil	MSDIALFGLGGLMFFQAYVTIRVVRHKPYTSEKKRHQLLIIWLVPFVGAAIALAGLDRD*
Ga0180064_10793802	3300014876	Soil	MSDILVYGFGGLLFFQVYVTIRVVRHKSYTSAQKRRQLLFVWLVPFVGAAIALAALATDK
Ga0167652_10376851	3300015164	Glacier Forefield Soil	MSDIVIFGLGGLMFYQAYVTIRVVRHKSYTSEKKRHQLLIIWLVPFVGAAIAL
Ga0137409_109292211	3300015245	Vadose Zone Soil	MSDVVIYGLGGLMFFQAYVTIRVVRHKSYTSEKKRHQLLIIWLVPFIGAAIALAGLDRD*
Ga0180073_10863412	3300015256	Soil	ATLRMRRGKTRTLDCMSDIALFGLGGLMFFQAYVTIRVVRHKPYTSEKKRQQLLIIWLVPFVGAAIALAGLDRD*
Ga0184627_100401504	3300018079	Groundwater Sediment	MRGGLTTYGFGGLLAFQTYVTVRVVLSKSYTRAEKWRQLLFVWLVPFVGAAIALSVLATNRKIPVRPDKDL
Ga0184627_100566843	3300018079	Groundwater Sediment	MSDIVIYGLGGLMFYQAYVTIRVVRSKSHTSAQKRRHLLFIWLVPFVGAAMALADLATDKKDRV
Ga0184628_100525042	3300018083	Groundwater Sediment	MSDTVIYGLGGLMFFQAYVTVRVMRKKSFTSAQKRRQLLFIWLVPFIGAAIALAALATDDKIPGGPR
Ga0184629_100499573	3300018084	Groundwater Sediment	MSENLIYGFAGLLFFQVYVTIRVVRHKSYTSAQKRRQLLYIWLVPFVGAAITLAVLATDRKIP
Ga0066669_105304851	3300018482	Grasslands Soil	MSDVVLYVIGGLVLYQAYVTIRVVRSKSHTPAQKRRHFLFIWLVPFIGAAMALADLATKDRG
Ga0180115_12868681	3300019257	Groundwater Sediment	MSDIVLYGLVGLMFYQVYVTVRLVRSKAFTPAQKRRQALFIWLVPFVGAAATLAALATD
Ga0173481_103797212	3300019356	Soil	MSDIVIYSIGGLVLYQAYATIRVVRHKPYDAQKKRNQLLIIWLVPVIGAAAALAGLAPGGEAAARSEKKNR
Ga0173479_106028391	3300019362	Soil	MSDIVLYVIGGLVFYQAYVTVRVARSKSHTPAQKKRHFLFIWLVPFIGAAMALADLAAKDPS
Ga0210379_100308232	3300021081	Groundwater Sediment	MSENLIYGFAGLLFFQVYVTIRVVRHKSYTSAQKQRLLLYIWLVPFVGAAITLAVLATDRKIP
Ga0207646_103122513	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MPDIVLYVIVGLVFYQAYVTVRVARSKSHTPAQKRRHFLFIWLIPFIGAAMALADVAAKDPS
Ga0209237_10687111	3300026297	Grasslands Soil	MSDVVLYVIGGLVLYQAYVTIRVVRSKSHTPSQKRRHFLFIWLVPFIGAAMALADLATKDRG
Ga0209647_100008663	3300026319	Grasslands Soil	MSDIIVYGIGGLVLYQAYVTVRLVRSKSFTPEQKWRQALFVWLVPFIGAAATLALLATHKESR
Ga0209131_10731081	3300026320	Grasslands Soil	MSDIVIYGLGGLMFYQAYVTVRVMRKKSYTSAQKRRQLLFIWLVPFIGAAMALAALTTDEKTPASPN
Ga0209131_12256271	3300026320	Grasslands Soil	MSDTVLYVIVGLMFFQAYVTVRVAQHKTMTSAQKRRHFLLIWLLPFIGAALALAELEQPK
Ga0208685_10046605	3300027513	Soil	MSDIVLYGLGGLMFFQAYVTIRVVRHKSYTSEKKRHQVLIIWLVPFIGAALALAGLDRD
Ga0208185_11656572	3300027533	Soil	MSDEILIYGLGGLMFFQAYVTVRVVRHKPYTAAQKRRQLLFVWLIPFFGAAVALAALATDNNKDSAPHQPK
Ga0208454_10361013	3300027573	Soil	MSDIDIVIYSLGGLMFFQAYVTIRVVRHKSYTSEKKRHQLLIIWLVPFVGAAIALAGLATDGET
Ga0307497_100271113	3300031226	Soil	MSEEILIYGVGGLMFYQAYVTFRVVRHKAYTPAQKQRQLLFIWLVPFIGAAIALAA
Ga0247727_100393894	3300031576	Biofilm	MSENLIYIFGGLLFYQAYVTIRVVRHKAYSSAQKRRQLLLIWLVPFIGAAIALAVLATDDKRPRTP
Ga0307468_1006859713	3300031740	Hardwood Forest Soil	MSDIVIYGIGGLVFYQAYATVRVVRHKSYAPEKKRQQLLIIWLVPFIGAAIALAGLSPEPHNRD
Ga0307468_1007355322	3300031740	Hardwood Forest Soil	MSDNVIYGLGGLVFFQAYVTVRIVRKKSYTAAQKRRQLLFVWLVPFIGAAIALAALATDDSNPGRPG
Ga0310893_105802382	3300031892	Soil	MPDIVLYVIVGLVFYQAYVTVRVARSKSHTPAQKRRHFLFIWLIPFIGAAMALADVAAK
Ga0364937_139555_249_428	3300034113	Sediment	MSDIALFGLGGLMFFQAYVTIRVVRHKPYTSEKKRQQLLIIWLVPFVGAAIALAGLDRD
Ga0364943_0339571_210_389	3300034354	Sediment	MSDIVIYGLGGLMFFQAYVTIRVVRHKSYTSEKKRHQLLIIWLVPFIGAALALAGLDRD

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F079752

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences