Metagenome Family F079730

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F079730
Family Type	Metagenome
Number of Sequences	115
Average Sequence Length	53 residues
Representative Sequence	VGPIRIDFGYQLNRPSFVIPIPCPSNATNCQVGSLGQQSTRLPGFQIFFNLGSSF
Number of Associated Samples	97
Number of Associated Scaffolds	115

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.87 %
% of genes near scaffold ends (potentially truncated)	99.13 %
% of genes from short scaffolds (< 2000 bps)	89.57 %
Associated GOLD sequencing projects	89
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.24

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (100.000 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (40.000 % of family members)
Environment Ontology (ENVO)	Unclassified (35.652 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (43.478 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Fibrous	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 15.66% Coil/Unstructured: 84.34%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.24
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.24
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 115 Family Scaffolds
PF04357	TamB	1.74
PF09832	DUF2059	0.87
PF01103	Omp85	0.87
PF13601	HTH_34	0.87

COG ID	Name	Functional Category	% Frequency in 115 Family Scaffolds
COG2911	Phospholipid transport to the outer membrane protein TamB	Cell wall/membrane/envelope biogenesis [M]	1.74

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	40.87 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.87 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	32.17 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	2.61 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.87 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Candidatus Acidoferrales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales	27.83 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	4.35 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.61 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.87 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Candidatus Acidoferrum	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum	27.83 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	4.35 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.61 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.87 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Candidatus Acidoferrum panamensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	27.83 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.61 %
unclassified Acidobacteriaceae	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae	0.87 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.87 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Candidatus Acidoferrum panamensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	27.83 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.61 %
Acidobacteriaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium	0.87 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.87 %
Unclassified	root	N/A	0.00 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001661\|JGI12053J15887_10164878	All Organisms → cellular organisms → Bacteria	1153	Open in IMG/M
3300002917\|JGI25616J43925_10102186	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium	1182	Open in IMG/M
3300004267\|Ga0066396_10075703	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	585	Open in IMG/M
3300005166\|Ga0066674_10010223	All Organisms → cellular organisms → Bacteria	3859	Open in IMG/M
3300005467\|Ga0070706_100417140	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1249	Open in IMG/M
3300005536\|Ga0070697_101996745	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	519	Open in IMG/M
3300005555\|Ga0066692_10863221	All Organisms → cellular organisms → Bacteria	555	Open in IMG/M
3300005558\|Ga0066698_10179552	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1442	Open in IMG/M
3300005559\|Ga0066700_10000781	All Organisms → cellular organisms → Bacteria	12343	Open in IMG/M
3300005576\|Ga0066708_10015387	All Organisms → cellular organisms → Bacteria	3764	Open in IMG/M
3300005598\|Ga0066706_10830608	All Organisms → cellular organisms → Bacteria	726	Open in IMG/M
3300006852\|Ga0075433_10732664	All Organisms → cellular organisms → Bacteria	865	Open in IMG/M
3300006954\|Ga0079219_11231187	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	651	Open in IMG/M
3300007255\|Ga0099791_10201226	All Organisms → cellular organisms → Bacteria	939	Open in IMG/M
3300007258\|Ga0099793_10131289	All Organisms → cellular organisms → Bacteria	1178	Open in IMG/M
3300007258\|Ga0099793_10273849	All Organisms → cellular organisms → Bacteria	817	Open in IMG/M
3300007258\|Ga0099793_10314780	All Organisms → cellular organisms → Bacteria	762	Open in IMG/M
3300009038\|Ga0099829_10782173	All Organisms → cellular organisms → Bacteria	793	Open in IMG/M
3300009088\|Ga0099830_10902707	All Organisms → cellular organisms → Bacteria	731	Open in IMG/M
3300009090\|Ga0099827_10308665	All Organisms → cellular organisms → Bacteria	1339	Open in IMG/M
3300009522\|Ga0116218_1488726	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	549	Open in IMG/M
3300010320\|Ga0134109_10023319	All Organisms → cellular organisms → Bacteria	1918	Open in IMG/M
3300010358\|Ga0126370_12122525	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	552	Open in IMG/M
3300010360\|Ga0126372_13330104	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	500	Open in IMG/M
3300010361\|Ga0126378_10881380	All Organisms → cellular organisms → Bacteria	1002	Open in IMG/M
3300010361\|Ga0126378_12197521	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	630	Open in IMG/M
3300010366\|Ga0126379_12449611	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	621	Open in IMG/M
3300011270\|Ga0137391_10677815	All Organisms → cellular organisms → Bacteria	858	Open in IMG/M
3300011270\|Ga0137391_10827668	All Organisms → cellular organisms → Bacteria	761	Open in IMG/M
3300011271\|Ga0137393_10024930	All Organisms → cellular organisms → Bacteria → Acidobacteria	4440	Open in IMG/M
3300012096\|Ga0137389_10789654	All Organisms → cellular organisms → Bacteria	815	Open in IMG/M
3300012189\|Ga0137388_10313719	All Organisms → cellular organisms → Bacteria → Acidobacteria	1440	Open in IMG/M
3300012189\|Ga0137388_10393421	All Organisms → cellular organisms → Bacteria	1282	Open in IMG/M
3300012199\|Ga0137383_10741387	All Organisms → cellular organisms → Bacteria	717	Open in IMG/M
3300012202\|Ga0137363_10829057	All Organisms → cellular organisms → Bacteria	785	Open in IMG/M
3300012202\|Ga0137363_11169543	All Organisms → cellular organisms → Bacteria	654	Open in IMG/M
3300012203\|Ga0137399_10541676	All Organisms → cellular organisms → Bacteria	977	Open in IMG/M
3300012205\|Ga0137362_10024805	All Organisms → cellular organisms → Bacteria	4681	Open in IMG/M
3300012205\|Ga0137362_10430416	All Organisms → cellular organisms → Bacteria	1142	Open in IMG/M
3300012205\|Ga0137362_11648055	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	528	Open in IMG/M
3300012210\|Ga0137378_11491531	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	587	Open in IMG/M
3300012351\|Ga0137386_10504637	All Organisms → cellular organisms → Bacteria	871	Open in IMG/M
3300012361\|Ga0137360_10117987	All Organisms → cellular organisms → Bacteria	2059	Open in IMG/M
3300012582\|Ga0137358_10149039	All Organisms → cellular organisms → Bacteria	1593	Open in IMG/M
3300012582\|Ga0137358_10391654	All Organisms → cellular organisms → Bacteria	940	Open in IMG/M
3300012582\|Ga0137358_10941418	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	563	Open in IMG/M
3300012918\|Ga0137396_10900198	All Organisms → cellular organisms → Bacteria	648	Open in IMG/M
3300012924\|Ga0137413_10257994	All Organisms → cellular organisms → Bacteria	1200	Open in IMG/M
3300012925\|Ga0137419_11097412	All Organisms → cellular organisms → Bacteria	663	Open in IMG/M
3300012927\|Ga0137416_11043940	All Organisms → cellular organisms → Bacteria	731	Open in IMG/M
3300012930\|Ga0137407_10459361	All Organisms → cellular organisms → Bacteria → Acidobacteria	1185	Open in IMG/M
3300012971\|Ga0126369_10443530	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1345	Open in IMG/M
3300012971\|Ga0126369_11071733	All Organisms → cellular organisms → Bacteria	895	Open in IMG/M
3300012975\|Ga0134110_10116702	All Organisms → cellular organisms → Bacteria	1087	Open in IMG/M
3300014150\|Ga0134081_10110127	All Organisms → cellular organisms → Bacteria	874	Open in IMG/M
3300015051\|Ga0137414_1146605	All Organisms → cellular organisms → Bacteria	1770	Open in IMG/M
3300015052\|Ga0137411_1049293	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	566	Open in IMG/M
3300015054\|Ga0137420_1210409	All Organisms → cellular organisms → Bacteria	1703	Open in IMG/M
3300015054\|Ga0137420_1331806	All Organisms → cellular organisms → Bacteria	789	Open in IMG/M
3300015054\|Ga0137420_1351036	All Organisms → cellular organisms → Bacteria	848	Open in IMG/M
3300015054\|Ga0137420_1460146	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2429	Open in IMG/M
3300015241\|Ga0137418_11230438	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	525	Open in IMG/M
3300016270\|Ga0182036_11784569	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	520	Open in IMG/M
3300016294\|Ga0182041_12150265	All Organisms → cellular organisms → Bacteria	521	Open in IMG/M
3300017928\|Ga0187806_1274595	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	588	Open in IMG/M
3300017943\|Ga0187819_10236603	All Organisms → cellular organisms → Bacteria	1071	Open in IMG/M
3300017955\|Ga0187817_10924689	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	558	Open in IMG/M
3300017973\|Ga0187780_11059549	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	592	Open in IMG/M
3300018085\|Ga0187772_10178550	All Organisms → cellular organisms → Bacteria	1418	Open in IMG/M
3300020199\|Ga0179592_10170875	All Organisms → cellular organisms → Bacteria	991	Open in IMG/M
3300020581\|Ga0210399_11254940	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	586	Open in IMG/M
3300021086\|Ga0179596_10227362	All Organisms → cellular organisms → Bacteria	915	Open in IMG/M
3300021086\|Ga0179596_10524236	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	601	Open in IMG/M
3300021088\|Ga0210404_10165736	All Organisms → cellular organisms → Bacteria	1167	Open in IMG/M
3300021420\|Ga0210394_10656039	All Organisms → cellular organisms → Bacteria	921	Open in IMG/M
3300021475\|Ga0210392_11219979	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	563	Open in IMG/M
3300021479\|Ga0210410_11609208	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	543	Open in IMG/M
3300021559\|Ga0210409_10759548	All Organisms → cellular organisms → Bacteria	841	Open in IMG/M
3300024179\|Ga0247695_1054791	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	584	Open in IMG/M
3300025916\|Ga0207663_10055359	All Organisms → cellular organisms → Bacteria	2489	Open in IMG/M
3300026307\|Ga0209469_1073541	All Organisms → cellular organisms → Bacteria	1035	Open in IMG/M
3300026328\|Ga0209802_1027799	All Organisms → cellular organisms → Bacteria	3009	Open in IMG/M
3300026333\|Ga0209158_1209283	All Organisms → cellular organisms → Bacteria	678	Open in IMG/M
3300026360\|Ga0257173_1002700	All Organisms → cellular organisms → Bacteria → Acidobacteria	1628	Open in IMG/M
3300026542\|Ga0209805_1068561	All Organisms → cellular organisms → Bacteria	1730	Open in IMG/M
3300026547\|Ga0209156_10503262	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	501	Open in IMG/M
3300026548\|Ga0209161_10338108	All Organisms → cellular organisms → Bacteria	683	Open in IMG/M
3300026551\|Ga0209648_10644246	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	580	Open in IMG/M
3300027061\|Ga0209729_1044598	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	562	Open in IMG/M
3300027610\|Ga0209528_1038245	All Organisms → cellular organisms → Bacteria	1061	Open in IMG/M
3300027643\|Ga0209076_1108763	All Organisms → cellular organisms → Bacteria	785	Open in IMG/M
3300027655\|Ga0209388_1038374	All Organisms → cellular organisms → Bacteria	1379	Open in IMG/M
3300027681\|Ga0208991_1146388	All Organisms → cellular organisms → Bacteria	699	Open in IMG/M
3300027875\|Ga0209283_10104446	All Organisms → cellular organisms → Bacteria → Acidobacteria	1856	Open in IMG/M
3300027875\|Ga0209283_10374871	All Organisms → cellular organisms → Bacteria	930	Open in IMG/M
3300027903\|Ga0209488_10096721	All Organisms → cellular organisms → Bacteria → Acidobacteria	2210	Open in IMG/M
3300031231\|Ga0170824_108995301	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	575	Open in IMG/M
3300031543\|Ga0318516_10539609	All Organisms → cellular organisms → Bacteria	668	Open in IMG/M
3300031572\|Ga0318515_10137060	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1300	Open in IMG/M
3300031740\|Ga0307468_100318612	All Organisms → cellular organisms → Bacteria	1140	Open in IMG/M
3300031753\|Ga0307477_10971758	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	558	Open in IMG/M
3300031763\|Ga0318537_10028679	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	1972	Open in IMG/M
3300031823\|Ga0307478_11584693	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	541	Open in IMG/M
3300031896\|Ga0318551_10077618	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	1733	Open in IMG/M
3300031941\|Ga0310912_11411143	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	526	Open in IMG/M
3300031946\|Ga0310910_11296657	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	563	Open in IMG/M
3300031954\|Ga0306926_10125211	All Organisms → cellular organisms → Bacteria → Acidobacteria	3171	Open in IMG/M
3300031954\|Ga0306926_10641513	All Organisms → cellular organisms → Bacteria	1293	Open in IMG/M
3300031962\|Ga0307479_11075655	All Organisms → cellular organisms → Bacteria	771	Open in IMG/M
3300031962\|Ga0307479_11271822	All Organisms → cellular organisms → Bacteria	697	Open in IMG/M
3300032009\|Ga0318563_10174690	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1156	Open in IMG/M
3300032064\|Ga0318510_10027368	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	1878	Open in IMG/M
3300032180\|Ga0307471_101075700	All Organisms → cellular organisms → Bacteria	970	Open in IMG/M
3300032261\|Ga0306920_101247140	All Organisms → cellular organisms → Bacteria	1072	Open in IMG/M
3300033158\|Ga0335077_10018836	All Organisms → cellular organisms → Bacteria → Proteobacteria	8643	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.13%
Host-Associated	Host-Associated	0.87%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	96.52%
Aquatic	Environmental → Aquatic	2.61%
Plants	Host-Associated → Plants	0.87%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	96.52%
Freshwater	Environmental → Aquatic → Freshwater	2.61%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.87%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	86.96%
Loam	Environmental → Terrestrial → Soil → Loam	6.96%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	2.61%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	2.61%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.87%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	49.57%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	24.35%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	12.17%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	4.35%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	2.61%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	2.61%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.61%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.87%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.87%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	40.00%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	13.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	10.43%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	6.09%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	5.22%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	4.35%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	3.48%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	2.61%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	2.61%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.61%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.74%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	1.74%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	0.87%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.87%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.87%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.87%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.87%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.87%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001661	Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)	Environmental	Open in IMG/M
3300002917	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_100cm	Environmental	Open in IMG/M
3300004267	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 6 MoBio	Environmental	Open in IMG/M
3300005166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005555	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141	Environmental	Open in IMG/M
3300005558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147	Environmental	Open in IMG/M
3300005559	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149	Environmental	Open in IMG/M
3300005576	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157	Environmental	Open in IMG/M
3300005598	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155	Environmental	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009522	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_5_LS metaG	Environmental	Open in IMG/M
3300010320	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_11112015	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012351	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012975	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_11112015	Environmental	Open in IMG/M
3300014150	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300015051	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300015052	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300015054	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300015241	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300017928	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_1	Environmental	Open in IMG/M
3300017943	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4	Environmental	Open in IMG/M
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental	Open in IMG/M
3300017973	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_20_MG	Environmental	Open in IMG/M
3300018085	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300020199	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300021086	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021475	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300024179	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK36	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300026307	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123 (SPAdes)	Environmental	Open in IMG/M
3300026328	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129 (SPAdes)	Environmental	Open in IMG/M
3300026333	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140 (SPAdes)	Environmental	Open in IMG/M
3300026360	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-19-B	Environmental	Open in IMG/M
3300026542	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148 (SPAdes)	Environmental	Open in IMG/M
3300026547	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124 (SPAdes)	Environmental	Open in IMG/M
3300026548	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155 (SPAdes)	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300027061	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM1H0_M3 (SPAdes)	Environmental	Open in IMG/M
3300027610	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M3 (SPAdes)	Environmental	Open in IMG/M
3300027643	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3 (SPAdes)	Environmental	Open in IMG/M
3300027655	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1 (SPAdes)	Environmental	Open in IMG/M
3300027681	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M2 (SPAdes)	Environmental	Open in IMG/M
3300027875	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031572	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031763	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f29	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300031896	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032009	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f19	Environmental	Open in IMG/M
3300032064	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f17	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033158	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12053J15887_101648781	3300001661	Forest Soil	KTPVGPIRIDLGYQLNRPSFVIPIPCPSNAPTCLVGSLGQQSTRLPGFQIFFNLGTSF*
JGI25616J43925_101021863	3300002917	Grasslands Soil	VGPIRIDFGYQLNRPSFVIPIPCPSNATNCQVGSLGQQSTRLPGFQIFFNLGSSF*
Ga0066396_100757031	3300004267	Tropical Forest Soil	VGPIRVDLGYALNRPSFVIPIPCPNGTTPTTCPTGSLGFQSTRLPGFQVFFSLGSSF*
Ga0066674_100102233	3300005166	Soil	RIDLGYQLNRPSFIVPIPCPSNATDCKSGSLGQMSTRLSGFQIFFNLGSTF*
Ga0070706_1004171401	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	RVDLGYQVNRPFFVIPIPCPSGSTSATCTTGSLGFQSTQLPRLQVFFSLGSSF*
Ga0070697_1019967451	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	VGPIRVDLGYQLNRPPFVIPVPCPRNTPTCQLGSLGQQGTRLPGFQIFFNLGSSF*
Ga0066692_108632211	3300005555	Soil	PCPSNDKTCQIGSLGQQGTRLPGFQIFFNLGSTF*
Ga0066698_101795521	3300005558	Soil	RIDFGYQLNRPSFVIPIPCPSNATTCQIGSLGQQGIRLPGFQIFFNLGSTF*
Ga0066700_1000078112	3300005559	Soil	VGPIRIDLGYQLNRPSFIVPIPCPSNATDCKSGSLGQMSTRLSGFQIFFNLGSTF*
Ga0066708_100153871	3300005576	Soil	IDLGYQLNRPSFIVPIPCPSNATDCKSGSLGQMSTRLSGFQIFFNLGSTF*
Ga0066706_108306081	3300005598	Soil	TPVGPIRVDLGYQVNRPFFVIPIPCPSGSTSATCTTGSLGFQSTQLPRLQVFFSLGSSF*
Ga0075433_107326642	3300006852	Populus Rhizosphere	YATPVGPIRVDLGYALNRPSFVIPIPCPSGTTPATCPTGSLGFQSTRLPAFQVFFSLGSSF*
Ga0079219_112311871	3300006954	Agricultural Soil	IRIDLGYQLNRPLFIVPIPCPSNTPTCVTGSLGQKSTRLPGFQIFFNLGSTF*
Ga0099791_102012263	3300007255	Vadose Zone Soil	FVIPIPCPSNCNNFKVGSLGQQSTRLPGFQIFFNLGTSF*
Ga0099793_101312893	3300007258	Vadose Zone Soil	YKTPVGPIRIDLGYQLNRPSFVIPIPCPSNCNNFKVGSLGQQSTRLPGFQIFFNLGTSF*
Ga0099793_102738492	3300007258	Vadose Zone Soil	IPIPCPRNTPTCQLGSLGQQGTRLPGFQIFFNLGSSF*
Ga0099793_103147802	3300007258	Vadose Zone Soil	RVDFGYQLNRPSFVIPIPCPSNDKNCQVGSLGQQGTRLPGFQIFFNLGASF*
Ga0099829_107821732	3300009038	Vadose Zone Soil	DFGYQLNRPQFVLPIPCASNALKCTVGSLGQQSTQLPGFQFFFNLGSSF*
Ga0099830_109027072	3300009088	Vadose Zone Soil	SFVIPIPCPSNDKNCQVGSLGQQSTRLPGFQIFFNLGASF*
Ga0099827_103086651	3300009090	Vadose Zone Soil	IRVDFGYQLNRPWFVIPIQCPSNDTKCQVGSLGQQSTRLPGFQIFFNLGASF*
Ga0116218_14887262	3300009522	Peatlands Soil	RIDLGYQINRPNFVIPIPCPSSATTCQVGSLGYEGTRLPGFQIFFNLGSSF*
Ga0134109_100233193	3300010320	Grasslands Soil	GYQLNRPSFIVPIPCPSNATDCKSGSLGQMSTRLSGFQIFFNLGSTF*
Ga0126370_121225252	3300010358	Tropical Forest Soil	ARYATPVGPIRVDLGYQLNRAYFVIPIACPSGTTPTTCPTGSLGFHSTRLPAFQIFFTLGSSF*
Ga0126372_133301041	3300010360	Tropical Forest Soil	PIRIDLGYQLNRPTFVIPIPCPANAPASQCQVGSLGQKGARLPGFQIFFNLGSSF*
Ga0126378_108813801	3300010361	Tropical Forest Soil	RYKTPVGPIRIDLGYQLNRPLFIVPIPCPPNTSSCVPGSLGQQSTRLPGFQIFFNLGSSF
Ga0126378_121975211	3300010361	Tropical Forest Soil	RTPVGPIRIDLGYQLNRPLFIIPIPCPANTPSCTVGSLGQQRTRLPGFQIFFNLGSTF*
Ga0126379_124496111	3300010366	Tropical Forest Soil	LNRPTFVIPIPCPGNTATTTPPTCTVGSLGQKGTRLPGFQIFFNLGASF*
Ga0137391_106778152	3300011270	Vadose Zone Soil	RIDFGYQLNRPLFVIPIPCPRGATACQVGSLGQQSTRLPGFQIFFNLGSTF*
Ga0137391_108276681	3300011270	Vadose Zone Soil	YQLNRPSFVIPIPCPSNATNCQVGSLGQQGARLSGFQIFFNLGSTF*
Ga0137393_100249303	3300011271	Vadose Zone Soil	VGPIRIDLGYQLNRPSFVIPIPCPSNNQTCQVGSLGQQSTRLPGFQIFFNLGSSF*
Ga0137389_107896541	3300012096	Vadose Zone Soil	LGVRYKTPVGPIRIDFGYQLNRPSFVIPIPCPSNCKTFKVGSLGQQGTRLPGFQIFFNLGSSF*
Ga0137388_103137193	3300012189	Vadose Zone Soil	GYQLNRPSFVIPIPCPSSVKTCQVGSLGQQGTRLPGFQIFFNLGSTF*
Ga0137388_103934211	3300012189	Vadose Zone Soil	GPIRVDFGYQLKRPSFVIPIPCPRNTPSCQIGSLGYQGTRLPGFQIFFNLGSSF*
Ga0137383_107413872	3300012199	Vadose Zone Soil	DLGYQMNRPFFVIPIPCPSGTTTSTCPTGSLGFQSTQLPRLQVFFSLGSSF*
Ga0137363_108290572	3300012202	Vadose Zone Soil	GYQLNRPLFVIPIPCQANCTNFKVGSLGQQSTRLPGFQIFFNLGSSF*
Ga0137363_111695431	3300012202	Vadose Zone Soil	LFVIPIPCQANCTNFKVGSLGQESTRLPGFQIFFNLGSSF*
Ga0137399_105416761	3300012203	Vadose Zone Soil	NRPSFVIPIPCPSNDKNCQVGSLGQQSTRLPGFQIFFNLGASF*
Ga0137362_100248051	3300012205	Vadose Zone Soil	LFVIPIPCQANCTNFKVGSLGQQSTRLPGFQIFFNLGSSF*
Ga0137362_104304161	3300012205	Vadose Zone Soil	RIDFGYQLNRPLFVIPIPCQANCTNFKVGSLGQQSTRLPGFQIFFNLGSSF*
Ga0137362_116480551	3300012205	Vadose Zone Soil	IRVDLGYQMNRPFFVIPIPCPSGATTTTCPTGSLGFQSTQLPRLQVFFSLGSSF*
Ga0137378_114915312	3300012210	Vadose Zone Soil	YKTPVGPIRVDFGYQLNRPSFVIPIQCPSNATNCQVGSLGQHSTRLPGFQIFFNLGASF*
Ga0137386_105046373	3300012351	Vadose Zone Soil	NRPSFIVPIPCPSNATDCKSGSLGQMSTRLSGFQIFFNLGSTF*
Ga0137360_101179871	3300012361	Vadose Zone Soil	FGYQLNRPLFVIPIPCPSGATNCLVGSLGQQSTRLPGFQIFFNLGSSF*
Ga0137358_101490391	3300012582	Vadose Zone Soil	VGPIRVDFGYQLNRPSFVIPIPCPSNATSCQVGSLGQQSTRLPGFQIFFNLGASF*
Ga0137358_103916543	3300012582	Vadose Zone Soil	RIDLGYQLNRPSFVIPIPCPSNCNKFKVGSLGQQSTRLPGFQIFFNLGTSF*
Ga0137358_109414183	3300012582	Vadose Zone Soil	VRYKTPVGPIRVDFGYQLNRPSFVIPIPCPSNATTCQIGSLGQQATRLPGFQIFFNLGSTF*
Ga0137396_109001982	3300012918	Vadose Zone Soil	PIRVDLGYQMNRPFFVIPIPCPSGTTTSTCPTGSLGFQSKQLTRLQVFFSLGSSF*
Ga0137413_102579941	3300012924	Vadose Zone Soil	IRVDLGYQMNRPFFVIPIPCPSGTTTTTCPTGSLGYQSTQLPRLQVFFSLGSSF*
Ga0137419_110974121	3300012925	Vadose Zone Soil	VGPIRIDFGYQLNRPSFVIPISCPSNAPTCKTGSLGQQGTRLPGFQIFFNLGSTF*
Ga0137416_110439402	3300012927	Vadose Zone Soil	KTPVGPIRIDFGYQLNRPSFVIPIPCPNNSPNCVIGSLGQKGTQLPGFQIFFNLGSSF*
Ga0137407_104593611	3300012930	Vadose Zone Soil	YKTPVGPIRIDFGYQLNRPSFVIPIPCPSGNTTCQLGSLGQQGTRLPGFQIFFNLGASF*
Ga0126369_104435303	3300012971	Tropical Forest Soil	YEMNRPFFVIPIPCPSGTNSTTCPQGSLGFQATRLPRLQVFFSLGSSF*
Ga0126369_110717331	3300012971	Tropical Forest Soil	QLNRPTFVIPIPCPSNTPTCQVGSLGQKGTRLPGFQIFFNLGSSF*
Ga0134110_101167023	3300012975	Grasslands Soil	RIDLGYQLNRPLFIVPIPCPSNTPSCVAGSLGQRSTRLPWFQIFFNLGSTF*
Ga0134081_101101271	3300014150	Grasslands Soil	TPVGPIRVDFGYQLNRPSFVIPIQCPSNATKCQVGSLGEQSTRLPGFQIFFNLGASF*
Ga0137414_11466053	3300015051	Vadose Zone Soil	PIRIDLGYQLNRPSFVIPIQCPSNTTSTTCPVGSLGQQGTRLPGFQIFFNLGSSF*
Ga0137411_10492931	3300015052	Vadose Zone Soil	ATPVGPVRVDLGYQMNRPFFFVIPIPCPSNTTTATCAQGSLGFQATRLPRLQVFFSLGSSF*
Ga0137420_12104091	3300015054	Vadose Zone Soil	IPIPCPSNCNNFKVGSLGQQSTRLPGFQIFFNLGTSF*
Ga0137420_13318061	3300015054	Vadose Zone Soil	FRARGNCNNFKVGSLGQQSTRLPGFQIFFNLGTSF*
Ga0137420_13510361	3300015054	Vadose Zone Soil	NRPSFVIPIPPIPCPSGNTTCQLGSLGQQGTRLPGFQIFFNLGSSF*
Ga0137420_14601462	3300015054	Vadose Zone Soil	VGPIRIDFGYQLNRPLFVIPIPCQANCTNFKVGSLGQQSTRLPGFQIFFNLGSSF*
Ga0137418_112304381	3300015241	Vadose Zone Soil	VIPIPCPSNSQTCQVGSLGQQSTRLPGFQIFFNLGSSF*
Ga0182036_117845691	3300016270	Soil	YKTPVGPIRIDLGYQLNRPLFIVPVPCPSNAPTSGPNQCQIGSLGQMSTRLSGFQIFFNLGSTF
Ga0182041_121502652	3300016294	Soil	YFSNSIGFGVRYATPVGPIRVDLGYQMNRAYFVVPIPCPSGTTTTTCPTGSLGFESGQLPRLQVFFSLGPPF
Ga0187806_12745951	3300017928	Freshwater Sediment	PVGPIRIDLGYQLNRPQFVIPVPCPGNEPTCVLGSLGQQGARLPGFQIFFNLGPSF
Ga0187819_102366033	3300017943	Freshwater Sediment	YKTPVGPIRIDLGYQLNRPQFVIPIPCPSNEPTCVVGSLGQQGARLPGFQIFFNLGASF
Ga0187817_109246891	3300017955	Freshwater Sediment	LGYQLNRPQFVIPVPCPGNEPTCVLGSLGQQGARLPGFQIFFNLGPSF
Ga0187780_110595492	3300017973	Tropical Peatland	PIRIDLGYQLNRPSFVIPIPCPSNAPTCVAGSLGQQGTRLPGFQIFFNLGSTF
Ga0187772_101785501	3300018085	Tropical Peatland	NRPTFVIPIPCPSGSTTCTIGSLGQQGTRLPGFQIFFNLGSSF
Ga0179592_101708751	3300020199	Vadose Zone Soil	VYLGYQLNRPSFVIPIPCPRNTPSCQFGSLGQQGTRLPGFQIFFNLGSSF
Ga0210399_112549402	3300020581	Soil	VIPIPCPNNTSKCVTGSLGYEGTRLGGFQIFFNLGSSF
Ga0179596_102273623	3300021086	Vadose Zone Soil	IPIPCPSNDKNCQVGSLGQQGTRLPGFQIFFNLGASF
Ga0179596_105242362	3300021086	Vadose Zone Soil	GPIRIDLGYQLNRPSFVIPIPCPSNNQTCQVGSLGQQSTRLPGFQIFFNLGSSF
Ga0210404_101657361	3300021088	Soil	VGPIRIDLGYQLNRPSFVIPIPCPSNCNNFKVGSLGQQSTRLPGFQIFFNLGASF
Ga0210394_106560391	3300021420	Soil	VRYKTPVGPIRIDLGYMINRPSFVIPIPCPNNTSKCVTGSLGYEGTRLGGFQIFFNLGSS
Ga0210392_112199792	3300021475	Soil	KTPVGPIRIDLGYQINRPVFVIPIPCPGNAPTCITGSLGQQGTRLSGFQIFFNLGSTF
Ga0210410_116092081	3300021479	Soil	VRYKTPVGPIRIDLGYQLNRPLFVIPIPCPSNCNNFKVGSLGQQSTRLPGFQIFFNLGAS
Ga0210409_107595482	3300021559	Soil	YQLNRPSFVIPIPCPRNTPTCQLGSLGQQGTRLPGFQIFFNLGSSF
Ga0247695_10547911	3300024179	Soil	TGVRYATPVGPVRVDLGYQLNRPFFVIPIPCPSGTTTTTCPAGSLGFQATRLPRLQVFFSLGSSF
Ga0207663_100553591	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	VGPIRVDLGYQLNRPNFVIPIPCPNGTTPTTCPTGSLGFTSTRLPALQVFFSLGSSF
Ga0209469_10735411	3300026307	Soil	IRIDLGYQLNRPSFIVPIPCPSNATDCKSGSLGQMSTRLSGFQIFFNLGSTF
Ga0209802_10277991	3300026328	Soil	GPIRIDFGYQLNRPLFVIPIPCPSGAANCQVGSLGQQSTRLPGFQIFFNLGSSF
Ga0209158_12092832	3300026333	Soil	VGPIRIDFGYQLNRPSFVIPIPCPSNSTNCVIGSLGQKGTQLPGFQIFFNLGSSF
Ga0257173_10027001	3300026360	Soil	SFVIPIPCPRNTPTCQLGSLGQQGTRLPGFQIFFNLGSSF
Ga0209805_10685613	3300026542	Soil	RIDLGYQLNRPLFIVPIPCPSNTSGCTPGSLGQMSTRLPGFQVFFNLGSTF
Ga0209156_105032621	3300026547	Soil	TPVGPIRIDLGYQLNRPLFIVPIPCPSNTPSCVAGSLGQRSTRLPWFQIFFNLGSTF
Ga0209161_103381081	3300026548	Soil	PIRVDLGYQVNRPFFVIPIPCPSGSTSATCTTGSLGFQSTQLPRLQVFFSLGSSF
Ga0209648_106442461	3300026551	Grasslands Soil	PIRIDLGYQLNRPLFIVPIPCPPNTPSCVPGSLGQMSTRLSGFQIFFNLGSTF
Ga0209729_10445981	3300027061	Forest Soil	RYKTPVGPIRIDLGYQLNRPSFVIPIPCPSNSTNQTCPVGSLGQQGTRLPGFQIFFNLGASF
Ga0209528_10382451	3300027610	Forest Soil	RYKTPVGPIRVDFGYQLNRPSFVIPIPCPSNDKNCQVGSLGQQGTRLPGFQIFFNLGASF
Ga0209076_11087632	3300027643	Vadose Zone Soil	YKTPVGPIRVDFGYQLNRPSFVIPIPCPSNDKNCQVGSLGQQGTRLPGFQIFFNLGASF
Ga0209388_10383743	3300027655	Vadose Zone Soil	YKTPVGPIRIDFGYQLNRPLFVIPIPCQANCTNFKVGSLGQQSTRLPGFQIFFNLGSSF
Ga0208991_11463881	3300027681	Forest Soil	FGYQLNRPSFVIPIPCPSSATNCQVGSLGQQSTRLPGFQIFFNLGSSF
Ga0209283_101044461	3300027875	Vadose Zone Soil	PIRIDFGYQLNRPSFVIPIPCPSNCKTFKVGSLGQQGTRLPGFQIFFNLGSSF
Ga0209283_103748713	3300027875	Vadose Zone Soil	VGPIRIDFGYQLNRPLFVIPIPCPSNCKNFKVGSLGQQSTRLPGFQIFFNLGSSF
Ga0209488_100967213	3300027903	Vadose Zone Soil	RPSFVIPIPCPSNSQTCQVGSLGQQSTRLPGFQIFFNLGSSF
Ga0170824_1089953011	3300031231	Forest Soil	TPVGPIRVDLGYQMNRPFFVIPIPCPSGTTTTTCPTGSLGFQSTQLPRLQVFFSLGSSF
Ga0318516_105396091	3300031543	Soil	RYATPVGPIRVDLGYQVNRPYFVVPIPCPNGTTTNTCPTGSLGFEPGRLPRLQVFFSLGPPF
Ga0318515_101370601	3300031572	Soil	LGYQLNRPLFIVPIPCPANAPTSGSNQCAIGSLGQMSTRLSGFQIFFSLGPSF
Ga0307468_1003186121	3300031740	Hardwood Forest Soil	TPVGPIRVDLGYALNRPNFVIPIACPSGSTPTSCPTGSLGFQSTRLPALQVFFSLGSSF
Ga0307477_109717582	3300031753	Hardwood Forest Soil	VGPIRIDLGYQLNRPLFVIPVPCPANAPTCAVGSLGQMSARLPGFQIFFNLGSSF
Ga0318537_100286791	3300031763	Soil	KTPVGPIRIDLGYQLNRPLFIVPIPCPANAPTSGSNQCAIGSLGQMSTRLSGFQIFFSLGPSF
Ga0307478_115846932	3300031823	Hardwood Forest Soil	SFAIPIPCPSNAANCQIGSLGQQGTRLPGFQIFFNLGSSF
Ga0318551_100776183	3300031896	Soil	VGPIRIDLGYQLNRPLFIVPIPCPANAPTSGSNQCAIGSLGQMSTRLSGFQIFFSLGPSF
Ga0310912_114111432	3300031941	Soil	IGFGVRYATPVGPIRVDLGYQMNRAYFVVPIPCPSGTTTTTCPTGSLGFESGQLPRLQVFFSLGPPF
Ga0310910_112966571	3300031946	Soil	YATPVGPIRVDLGYQVNRPYFVVPIPCPNGTTTNTCPTGSLGFEPGRLPRLQVFFSLGPP
Ga0306926_101252113	3300031954	Soil	RYATPVGPIRVDLGYQMNRAYFVVPIPCPSGTTTTTCPTGSLGFESGQLPRLQVFFSLGPPF
Ga0306926_106415131	3300031954	Soil	GYEINRPFFVIPLACPSGSTTTTCPPGSLGFQATRLPRLQVFFSLGSSF
Ga0307479_110756552	3300031962	Hardwood Forest Soil	NRPLFIVPIPCPSNATGCVSGSLGQMSTRLSGFQIFFNLGSTF
Ga0307479_112718221	3300031962	Hardwood Forest Soil	LGVRYKTPVGPIRVDFGYQLNRPSFVIPIPCPSNDKNCQDGSLGQQGTRLPGFQIFFNLGASF
Ga0318563_101746903	3300032009	Soil	PIRIDLGYQLNRPLFIVPIPCPANAPTSGSNQCAIGSLGQMSTRLSGFQIFFSLGPSF
Ga0318510_100273681	3300032064	Soil	DLGYQLNRPLFIVPIPCPANAPTSGSNQCAIGSLGQMSTRLSGFQIFFSLGPSF
Ga0307471_1010757003	3300032180	Hardwood Forest Soil	PVGPIRIDLGYQLNRPSFVIQIPCPSGNTTCQVGSLGQQGTRLPGFQIFFNLGASF
Ga0306920_1012471403	3300032261	Soil	YKTPVGPIRIDFGYQLNRPLFIVPIPCPSNTPTCVAGSLGQKSTRLTGFQVFFNLGSTF
Ga0335077_100188361	3300033158	Soil	LGVRYATPVGPIRVDVGYQINRPYIVVPIPCPSFTPNCTPGSLGYRSTQLPRLQVFFNLGSTF

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F079730

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences