Metagenome / Metatranscriptome Family F079641

Overview

Basic Information

• Family ID: F079641
• Family Type: Metagenome / Metatranscriptome
• Number of Sequences: 115
• Average Sequence Length: 63 residues
• Representative Sequence: GMFRATRELREAVKEAKRDNPGYNAVSVWSEMKDNHSVATVTLVKDNDWKTAVIDLTVYKPLIKE
• Number of Associated Samples: 91
• Number of Associated Scaffolds: 115

Quality Assessment

• Transcriptomic Evidence: Yes
• Most common taxonomic group: Bacteria
• % of genes with valid RBS motifs: 1.77 %
• % of genes near scaffold ends (potentially truncated): 95.65 %
• % of genes from short scaffolds (< 2000 bps): 92.17 %
• Associated GOLD sequencing projects: 84
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.70

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Bacteria (97.391 % of family members)
• NCBI Taxonomy ID: 2
• Taxonomy: All Organisms → cellular organisms → Bacteria

Most Common Ecosystem

• GOLD Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (41.739 % of family members)
• Environment Ontology (ENVO): Unclassified (48.696 % of family members)
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline) (53.913 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Globular
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 21.51%
  β-sheet: 30.11%
  Coil/Unstructured: 48.39%

Predicted 3D Structure

Structural matches with SCOPe domains

SCOP family	SCOP domain	Representative PDB	TM-score
d.17.2.1: Amine oxidase N-terminal region	d2oqea2	2oqe	0.75244
d.17.1.6: PepSY-like	d2gu3a2	2gu3	0.74976
d.17.4.0: automated matches	d4jf8a_	4jf8	0.73145
d.17.2.1: Amine oxidase N-terminal region	d1oaca2	1oac	0.72764
d.17.2.1: Amine oxidase N-terminal region	d1w7ca2	1w7c	0.71579

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 115 Family Scaffolds
PF13442	Cytochrome_CBB3	85.22
PF13360	PQQ_2	5.22
PF13570	PQQ_3	0.87
PF06283	ThuA	0.87
PF01618	MotA_ExbB	0.87

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 115 Family Scaffolds
COG4813	Trehalose utilization protein	Carbohydrate transport and metabolism [G]	0.87

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	97.39 %
Unclassified	root	N/A	2.61 %

Level 2

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	97.39 %
Unclassified	root	N/A	2.61 %

Level 3

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	97.39 %
Unclassified	root	N/A	2.61 %

Level 4

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	93.91 %
Unclassified	root	N/A	2.61 %

Level 5

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	92.17 %
Unclassified	root	N/A	2.61 %

Level 6

Name	Rank	Taxonomy	Distribution
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	55.65 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	30.43 %
Unclassified	root	N/A	2.61 %

Level 7

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	55.65 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	15.65 %
Unclassified	root	N/A	2.61 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	0.87 %

Level 8

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	55.65 %
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	15.65 %
Unclassified	root	N/A	2.61 %
Chelativorans	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Chelativorans	0.87 %

Level 9

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	55.65 %
unclassified Rhodoplanes	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes	15.65 %
Unclassified	root	N/A	2.61 %
unclassified Chelativorans	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Chelativorans → unclassified Chelativorans	0.87 %

Level 10

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	55.65 %
Rhodoplanes sp. Z2-YC6860	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	15.65 %
Unclassified	root	N/A	2.61 %
Chelativorans sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Chelativorans → unclassified Chelativorans → Chelativorans sp.	0.87 %

Associated Scaffolds

Scaffold	Taxonomy	Length
2170459013|GO6OHWN02FMU9K	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	516
3300002245|JGIcombinedJ26739_101483505	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	573
3300005171|Ga0066677_10243925	All Organisms → cellular organisms → Bacteria → Proteobacteria	1018
3300005434|Ga0070709_11242254	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	600
3300005437|Ga0070710_11137109	All Organisms → cellular organisms → Bacteria → Proteobacteria	575
3300005445|Ga0070708_100756444	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	914
3300005557|Ga0066704_11024733	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	509
3300005764|Ga0066903_100896348	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Chelativorans → unclassified Chelativorans → Chelativorans sp.	1604
3300006047|Ga0075024_100720180	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	550
3300007258|Ga0099793_10369168	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	703
3300009137|Ga0066709_101471779	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	985
3300009137|Ga0066709_101754009	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	875
3300009143|Ga0099792_10142975	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1310
3300009162|Ga0075423_10602315	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1158
3300010048|Ga0126373_12041604	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	636
3300010360|Ga0126372_10208823	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	1634
3300010361|Ga0126378_10531175	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	1291
3300010361|Ga0126378_12761960	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	561
3300010366|Ga0126379_10466350	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1328
3300010366|Ga0126379_11046714	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	921
3300010376|Ga0126381_101122187	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	1136
3300010376|Ga0126381_102212134	Not Available	791
3300012169|Ga0153990_1093278	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	675
3300012362|Ga0137361_10405747	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1252
3300012971|Ga0126369_12441062	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	608
3300016319|Ga0182033_10375630	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1195
3300016319|Ga0182033_11742923	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	565
3300016341|Ga0182035_11423193	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	623
3300016371|Ga0182034_10437972	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1080
3300016387|Ga0182040_10104130	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1933
3300016387|Ga0182040_10915732	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	728
3300016387|Ga0182040_11152250	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	651
3300016404|Ga0182037_11722670	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	559
3300016422|Ga0182039_10235244	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1483
3300016422|Ga0182039_12202313	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	508
3300016445|Ga0182038_11443021	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	617
3300017970|Ga0187783_10732036	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	714
3300018468|Ga0066662_12732590	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	523
3300020579|Ga0210407_10256990	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1361
3300020581|Ga0210399_11320993	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	567
3300021403|Ga0210397_10734413	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	760
3300021405|Ga0210387_10612702	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	967
3300021420|Ga0210394_11784701	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	513
3300021474|Ga0210390_10488471	All Organisms → cellular organisms → Bacteria	1038
3300021560|Ga0126371_11027950	All Organisms → cellular organisms → Bacteria	965
3300021560|Ga0126371_11030339	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	964
3300021560|Ga0126371_11880016	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	718
3300022507|Ga0222729_1017384	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	821
3300022508|Ga0222728_1124288	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	508
3300022527|Ga0242664_1103806	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	587
3300022527|Ga0242664_1151801	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	512
3300022528|Ga0242669_1012736	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1112
3300022532|Ga0242655_10103183	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	786
3300022533|Ga0242662_10217872	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	607
3300022712|Ga0242653_1071681	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	596
3300025898|Ga0207692_10836714	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	603
3300025929|Ga0207664_10789680	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	854
3300027583|Ga0209527_1092576	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	679
3300027727|Ga0209328_10167114	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	667
3300027915|Ga0209069_10893439	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	538
3300030730|Ga0307482_1283596	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	529
3300030862|Ga0265753_1076144	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	642
3300031057|Ga0170834_108574166	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	593
3300031090|Ga0265760_10357581	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	523
3300031090|Ga0265760_10376763	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	510
3300031545|Ga0318541_10118456	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1436
3300031573|Ga0310915_10042013	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2914
3300031573|Ga0310915_10045777	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2805
3300031573|Ga0310915_10563618	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	808
3300031668|Ga0318542_10626065	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	562
3300031679|Ga0318561_10326858	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	840
3300031681|Ga0318572_10883984	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	531
3300031713|Ga0318496_10536003	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	647
3300031713|Ga0318496_10792244	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	522
3300031719|Ga0306917_11064574	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	630
3300031736|Ga0318501_10290555	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	871
3300031736|Ga0318501_10849348	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	507
3300031747|Ga0318502_10550341	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	693
3300031754|Ga0307475_10363041	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1164
3300031768|Ga0318509_10546733	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	646
3300031768|Ga0318509_10547820	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	645
3300031778|Ga0318498_10504468	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	533
3300031781|Ga0318547_10637097	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	662
3300031797|Ga0318550_10500141	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	586
3300031846|Ga0318512_10210413	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	953
3300031859|Ga0318527_10289880	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	697
3300031890|Ga0306925_10221388	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2041
3300031896|Ga0318551_10384014	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	797
3300031910|Ga0306923_12296263	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	538
3300031912|Ga0306921_10003702	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	15531
3300031912|Ga0306921_10102148	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3324
3300031912|Ga0306921_11779652	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	663
3300031941|Ga0310912_10945567	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	662
3300031945|Ga0310913_10677989	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	729
3300031954|Ga0306926_10262445	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2140
3300031954|Ga0306926_11703360	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	719
3300031962|Ga0307479_11084558	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	767
3300031962|Ga0307479_11420640	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	652
3300031981|Ga0318531_10501304	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	550
3300032001|Ga0306922_10162610	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2390
3300032010|Ga0318569_10598949	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	513
3300032043|Ga0318556_10474996	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	654
3300032051|Ga0318532_10113267	All Organisms → cellular organisms → Bacteria	959
3300032060|Ga0318505_10098728	All Organisms → cellular organisms → Bacteria	1320
3300032076|Ga0306924_11044944	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	894
3300032076|Ga0306924_12130618	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	574
3300032091|Ga0318577_10379293	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	676
3300032091|Ga0318577_10480382	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	593
3300032094|Ga0318540_10233956	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	887
3300032261|Ga0306920_104381980	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	506
3300033289|Ga0310914_10369019	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1298
3300033289|Ga0310914_10624764	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	970
3300033290|Ga0318519_10645328	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	645

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Environmental	Environmental	98.26%
Host-Associated	Host-Associated	1.74%

Class

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	96.52%
Aquatic	Environmental → Aquatic	1.74%
Plants	Host-Associated → Plants	0.87%
Fungi	Host-Associated → Fungi	0.87%

Category

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	96.52%
Sediment	Environmental → Aquatic → Sediment	1.74%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.87%
Mycelium	Host-Associated → Fungi → Mycelium	0.87%

Type

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	86.96%
Loam	Environmental → Terrestrial → Soil → Loam	8.70%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.74%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.87%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.87%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified	0.87%

Subtype

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	66.09%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	16.52%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	4.35%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.35%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	3.48%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.74%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.87%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.87%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.87%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified	0.87%

Habitat

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	41.74%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	20.00%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	10.43%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	3.48%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.48%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.61%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	2.61%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.61%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	2.61%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.74%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.87%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.87%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	0.87%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.87%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.87%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.87%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.87%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.87%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.87%
Attine Ant Fungus Gardens	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens	0.87%

Associated Samples

Taxon OID	Sample Name	Habitat Type
2170459013	Grass soil microbial communities from Rothamsted Park, UK - July 2010 direct MP BIO 1O1 lysis soil at the rocks surface 0-21cm	Environmental
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental
3300005171	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126	Environmental
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental
3300005557	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153	Environmental
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental
3300006047	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013	Environmental
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental
3300012169	Attine ant fungus gardens microbial communities from North Carolina, USA - TSNC074 MetaG	Host-Associated
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental
3300017970	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MG	Environmental
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental
3300022507	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-27-M (Metagenome Metatranscriptome)	Environmental
3300022508	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-19-M (Metagenome Metatranscriptome)	Environmental
3300022527	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-4-O (Metagenome Metatranscriptome) (v2)	Environmental
3300022528	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O (Metagenome Metatranscriptome) (v2)	Environmental
3300022532	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-4-M (Metagenome Metatranscriptome) (v2)	Environmental
3300022533	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-7-M (Metagenome Metatranscriptome) (v2)	Environmental
3300022712	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-32-M (Metagenome Metatranscriptome) (v2)	Environmental
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental
3300027583	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M2 (SPAdes)	Environmental
3300027727	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M1 (SPAdes)	Environmental
3300027915	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013 (SPAdes)	Environmental
3300030730	Metatranscriptome of hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05 (Metagenome Metatranscriptome)	Environmental
3300030862	Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSE5 (Metagenome Metatranscriptome)	Environmental
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental
3300031090	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI1 (Metagenome Metatranscriptome)	Environmental
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental
3300031713	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22	Environmental
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental
3300031778	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f24	Environmental
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental
3300031797	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f23	Environmental
3300031846	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f19	Environmental
3300031859	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f25	Environmental
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental
3300031896	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19	Environmental
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental
3300031981	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f25	Environmental
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental
3300032010	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f22	Environmental
3300032043	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f24	Environmental
3300032051	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f26	Environmental
3300032060	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f18	Environmental
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental
3300032091	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f25	Environmental
3300032094	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f25	Environmental
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
N57_04167640	2170459013	Grass Soil	LAAAKKQADALFRATRELREAVKEAKRDNPGYQAVSVWSEMKDGHSIATVTLVKDNDWKTVVNDLTVYRTLIKEQP
JGIcombinedJ26739_1014835051	3300002245	Forest Soil	LREAVKEAKRDNPGYQAVSVWSEMKDGHSIATVTLVKDNDWKTVVNDLTVYRTLIKEQP*
Ga0066677_102439251	3300005171	Soil	RATREIREAVKEAKHDNPGYVAVSVWPEMKDGHSLANVTLVKDNDWKTAVVDLTVYRALIKD*
Ga0070709_112422541	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	KEAKHDNPSYLAVSVWPEMKDGHSLANVMLVKDNDWKTAVVDLTVYKTLIKE*
Ga0070710_111371091	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	ATRELREAVKEAKHDNPGYLAVSVWPEMKDSHSLATVTLVKDNDWKTAVIDLTVYKTLIKD*
Ga0070708_1007564441	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	KKQNDGLFRATRELREAVKEAKRDNPGYLAVSVWSEMKDSHSIATVMLVKDNDWKTVVNDLTVYRTLIKE*
Ga0066704_110247331	3300005557	Soil	DGLFRATRELREAVKEAKRDNPGYQAVSVWSEMKGGHSIATVTLVKDNDWKTVVNDLTVYRTLIKEQP*
Ga0066903_1008963481	3300005764	Tropical Forest Soil	NDGLFRATRELREAVKEAKRNNPGYNAVNVWSEMKDDHSVATVTLVKDNDWKTAVVDLTVYRPLIKE*
Ga0075024_1007201801	3300006047	Watersheds	LVEAKKQSDGLFRATRELREAVKEAKQNNPGYNAVNVWSEMKDNHSVATVTLVKDNDWKTAVVDLTVYRPLIKE*
Ga0099793_103691681	3300007258	Vadose Zone Soil	RATRELREAVKEAKSDNPGYSAVSVWSEMKDDHSIASVLLVKDNDWKTAVIDLTVYRKLIKD*
Ga0066709_1014717791	3300009137	Grasslands Soil	KRDNPGYLAVGVWPEMKDNRSLATVTLVKDNEWKTQVIDLTVYRTLIKE*
Ga0066709_1017540092	3300009137	Grasslands Soil	TAAKRQNDSLFRATRELREAVKEAKRDNPGYLAVSVWSEMKDSQSIATVMLVKDNDWKTVVNDLTVWRTLIKE*
Ga0099792_101429753	3300009143	Vadose Zone Soil	RELREAVKEAKRDNPGYQAVSVWSEMKDGHSIATVTLVKDNDWKTVVNDLTVYRTLIKEQP*
Ga0075423_106023151	3300009162	Populus Rhizosphere	VKEAKQDNPGYLAVSVWPEMKEAHSLATVLLVKDNDWKTVVIDLTVYKTLIKE*
Ga0126373_120416042	3300010048	Tropical Forest Soil	LTEAKKQSDGMSRATRELREAVREAKHDNPGYLAVSAWPEMKDGHSMATVLLVKDSDWKTVVVDLTVYKALIKD*
Ga0126372_102088231	3300010360	Tropical Forest Soil	AKHDNPGYLAVSVWPEMKGGHSLANVLLFKDNDWKTVVIDLTVYKTLLKD*
Ga0126378_105311751	3300010361	Tropical Forest Soil	TRELREAVKEAKRDNPGYQAVSVWSEMKGGHSIATVTLVKDNDWKTVVNDLTVYRTLIKEQP*
Ga0126378_127619601	3300010361	Tropical Forest Soil	KQNDGMFRATRELREAVKEAKHDNPGYNAVSVSSEMKDNHSVATVLLVKDNDWKTAVIDLTVYKTLIKD*
Ga0126379_104663503	3300010366	Tropical Forest Soil	RATRELREAVREAKRDNPGYLAVSVWSDMKDSHSIATVTLVKDNDWKTVVNDLTVYRTLIKEQP*
Ga0126379_110467143	3300010366	Tropical Forest Soil	GDMFRATRELREAVKEAKHDNPGYLAVSVWPEMKEGHSLANVLLFKDNDWKTVVIDLTVYKTLLKD*
Ga0134125_128148291	3300010371	Terrestrial Soil	DNPGYVAVSVWPEMKDGHSMVNVMLVKDNDWKTAVVDLTVYKTLIKE*
Ga0126381_1011221873	3300010376	Tropical Forest Soil	AAKKQADGLFRATRELREAVKEAKRDNPGYQAVSVWSEMQDSHSIATVTLVKDNDWKTVVNDLTVYRTLIKEQP*
Ga0126381_1022121342	3300010376	Tropical Forest Soil	AAKKQADGLFRATRELREAVKEAKRDNPGYQAVSVWSEMQGSHSIATVTLVKDNDWKTVVNDLTVYRTLIKEQP*
Ga0153990_10932782	3300012169	Attine Ant Fungus Gardens	GGDVLAAAKKQADGLFRATRELREAVKEAKRDNPGYQAVSVWSELKDGHSIATVTLVKDNDWKTVVNDLTVYRTLIKEQP*
Ga0137361_104057471	3300012362	Vadose Zone Soil	KNQNDGMFRATRELIEAVKEAKHDNPGYSAVSVWPEMKEGHSLATVTLVKGQDWKTSVIDLTVYKALLKN*
Ga0126369_124410621	3300012971	Tropical Forest Soil	KKQSDGMFRATRELREAVKEAKRDNPGYSAVSVSSEMKDDHSIATVLLVKDNDWKTAVIDLTVYKTLIKD*
Ga0182033_103756304	3300016319	Soil	ATRELREAVKEAKRNNPGYNAVSVWSEMKDNHSMATVTLVKDNDWKTAVVDLTVYRPLIK
Ga0182033_117429231	3300016319	Soil	EAVREAKHDNPGYNAVSVWSEMKDNHSVATVMLVKDNDWKTAVIDLTVYKPLLKQ
Ga0182035_114231932	3300016341	Soil	ATRELREAVKEAKRDNPGYLAVSVWPDTKDGHSVATVMLVKDNDWKSAVIDLTVYKPLIK
Ga0182034_104379723	3300016371	Soil	FRATRELREAVKEAKRDNPGYLAVSVWSDMKDSHSLATVTLVKGNDWKTAVIDLTVYKALIKE
Ga0182040_101041301	3300016387	Soil	AAKQQSGDMFRATRELREAVKEAKHDNPGYLAVSVWPEMKEGHSLANVLLFKDNEWRTVVIDLTVYKTLLKD
Ga0182040_109157322	3300016387	Soil	ATRELREAVKEAKHDNPGYNAVSVSSEMKDNHSVATVLLVKDNDWKTAVIDLTVYKTLIK
Ga0182040_111522501	3300016387	Soil	GDDLTAAKRQNDSLFRATRELREAVKEAKRDNPGYLAVSVWSEMKDSHSIATVTLVKDNDWKTVVNDLTVYRTLIKEQP
Ga0182037_117226701	3300016404	Soil	DGMFRATRELREAVKEAKRDNPGYNAVSVWSEMKDNHSVATVTLVKDNDWKIAVIDLTVYKPLIKE
Ga0182039_102352443	3300016422	Soil	GMFRATRELREAVKEAKRDNPGYNAVSVWSEMKDNHSVATVTLVKDNDWKTAVIDLTVYKPLIKE
Ga0182039_122023132	3300016422	Soil	TGGDRLMEAKKQSDGLFRATRELREAVKEAKRNNPGYNAVNVWSEMKDDHSVATVTLIKDNDWKTAVVDLTVYRPLIKE
Ga0182038_114430213	3300016445	Soil	REAVKEAKHENPGYNAVSVSSEMKDNHSVATVLLVKDNDWKTAVIDLTVYKTLIKD
Ga0187783_107320362	3300017970	Tropical Peatland	GGDDLTVAKKQNDGLFRATRELREAVKEAKRDNPGYLAVSVWPEMKDGHSIATVTLVKDNDWKTATIDLTVYRTLIKD
Ga0066662_127325901	3300018468	Grasslands Soil	RELREAVKEAKHDNPGYMAVSVWPEMKDNHSLANVLLVKDNDWKTTVVDLTVYKPLIKE
Ga0210407_102569903	3300020579	Soil	FRATRELREAVKEAKHDNPGYLAVSVSPEMKDGHSLASVMLVKGNDWKTALIDLTVYKVLIKE
Ga0210399_113209931	3300020581	Soil	DDLTDAKKQNDGMFRATRELREAVKEAKHDNPGYLAVSVWPEMKDSHSLATVTLIKDNDWKTAVIDLTVYKTLIKD
Ga0210396_110994752	3300021180	Soil	DNPGYLAVSVSPEMKDGHSLANVMLVKDNDWKTAVIDLTVYRALIKE
Ga0210397_107344132	3300021403	Soil	EAVKEAKHDNPGYLAVSVWPEMKDGHSLANVQLVKDNDWKTAVIDLTVYRALIKE
Ga0210387_106127023	3300021405	Soil	EAKRDNPGYQAVSVWSEMKDGHSIATVTLVKDNDWKTVVNDLTVYRTLIKEQP
Ga0210394_117847012	3300021420	Soil	FRATRELREAVKEAKHDNPGYLAVSVWPEMKDSHSLATVTLIKDNDWKTAVIDLTVYKTLIKD
Ga0210390_104884711	3300021474	Soil	FRATREIREAVKEAKHDNPGYMAVSVWPEMKDGHSLANVMLVKDNDWKTAVIDLTVYRALIKD
Ga0126371_110279503	3300021560	Tropical Forest Soil	MFRATRELREAVKEAKRDNPGYSAVSVSSEMKDNHSVATVLLVKDNDWKTAVVDLTVYKTLIKD
Ga0126371_110303391	3300021560	Tropical Forest Soil	KKQNAGMFRATRELREAVKEAKRDNPGYLAVSVWSDMKDSHSLATVTLVKDNDWKSAVIDLTVYKTLIKE
Ga0126371_118800162	3300021560	Tropical Forest Soil	VREAKRDNPGYLAVSVWSEMKDNHSLATVLLVKDNDWKTVVNDLTVYRTLIKEQP
Ga0222729_10173842	3300022507	Soil	MFRATREIREAVKEAKHDNPGYMAVSVWPEMKDGHSLANVMLVKDNDWKTAVIDLTVYRALIKD
Ga0222728_11242882	3300022508	Soil	EIREAVKEAKHDNPGYLAVSVWPEMKDGHSMANVQLVKDNDWKTAVVDLTVYRALIKE
Ga0242664_11038062	3300022527	Soil	REAVKEAKQNNPGYNAVNVWSEMKDNHSVATVTLVKDNDWKTAVVDLTVYRPLIKE
Ga0242664_11518012	3300022527	Soil	ELREAVKEAKHDNPGYLAVSVWPEMKDSHSLATVTLIKDNDWKTAVIDLTVYKTLIKD
Ga0242669_10127361	3300022528	Soil	AKKQSDGLFRATREIREAVKEAKHDNPGYLAVSVWPEMKDGHSMANVMLVKDNDWKTAVVDLTVYKALIKD
Ga0242655_101031831	3300022532	Soil	VKEAKHDNPGYLAVSVWPEMKDGHSMANVQLVKDNDWKTAVVDLTVYRALIKE
Ga0242662_102178721	3300022533	Soil	KEAKRDNPGYLAVSVWPEMKDGHSLANVMLVKDNDWKTAVIDLTVYKTLIKE
Ga0242653_10716811	3300022712	Soil	VKEAKRDNPGYSAVSVWSEMKDSHSVATVTLVKDNDWKTAVIDLTVYKPLIKE
Ga0207692_108367142	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	FTDAKKQNDGMFRATRELREAVKEAKHDNPGYLAVSVWPEMKDSHSLATVTLVKDNDWKTAVIDLTVYKTLIKD
Ga0207664_107896801	3300025929	Agricultural Soil	KKQYDGLFRATREIREAVKEAKHDNPGYVAVSVWPEMKDGHSMVNVMLVKDNDWKTAVVDLTVYKTLIKE
Ga0209527_10925762	3300027583	Forest Soil	KHDNPGYMAVSVWPEMKDGHSLANVMLVKDNDWKTAVIDLTVYRALIKD
Ga0209328_101671142	3300027727	Forest Soil	KEAKQDNPGYLAVSVWPEMKDGHSLANVLLVKDNDWKTAVIDLTVYRKLIKD
Ga0209069_108934392	3300027915	Watersheds	KKQRDGLFRATRELREAVKEAKQNNPGYNAVNVWSEMKDNHSVATVTLVKDNDWKTAVVDLTVYRPLIKE
Ga0307482_12835962	3300030730	Hardwood Forest Soil	EAKRDNPGYSAVSVWSEMKDNHSMATVLLIKDNDWKAAVVDLTVYKTLIKD
Ga0265753_10761442	3300030862	Soil	VEAKKQSDGLFRATRELREAVKEAKRNNPGYNAVNVWSEMKDDHSVATVTLVKDNDWKTAVVDLTVYRSLIKE
Ga0170834_1085741662	3300031057	Forest Soil	LREAVKEAKQNNPGYNAVNVWSEMKDNHSVATVTLVKDNDWKTAVVDLTVYRPLIKE
Ga0265760_103575812	3300031090	Soil	ELREAVKEAKRNNPGYNAVNVWSEMKDNHSVATVTLVKDNDWKTAVVDLTVYRPLVKE
Ga0265760_103767631	3300031090	Soil	REAVKEAKRDNPGYLAVSVSPEMKDGHSLANVMLVKDNDWKTAVIDLTVYRTLIKE
Ga0318541_101184564	3300031545	Soil	HDNPGYNAVSVWSEMKDNHSVATVTLVKNSDWKTAVIDLTVYKPLLKQ
Ga0310915_100420134	3300031573	Soil	ELREAVKEAKRDNPGYLAVSVWPDTKDGHSVATVMLVKDNDWKSAVIDLTVYKPLIKE
Ga0310915_100457771	3300031573	Soil	FRATRELREAVKEAKADNPGYNAVSVWSEMKDNHSVATVLLVKDNDWKTTVIDLTVYRKLIKD
Ga0310915_105636182	3300031573	Soil	TEAKRDNPGYSAVSVWSEMKDTHSVATVTLVKENDWKAAVIDLTVYKPLIKE
Ga0318542_106260651	3300031668	Soil	TRELREAVKEAKRDNPGYSAVSVWSEMKDTHSVATVTLVKENDWKTAVIDLTVYKPLIKE
Ga0318561_103268583	3300031679	Soil	LREAVREAKHDNPGYNAVSVWSDMKDNHSLATVTLVKDSDWKIAVIDLTVYRPLLKQ
Ga0318572_108839841	3300031681	Soil	EAVKEAKRDNPGYLAVSVWSEMKDNHSIATVTLVKDNDWKTVVNDLTVYRTLIKEQP
Ga0318496_105360031	3300031713	Soil	LTAAKKQNDGLFRATRELREAVKEAKRDNPGYLAVSVWPDTKDGHSVATVMLVKDNDWKSAVIDLTVYKPLIK
Ga0318496_107922442	3300031713	Soil	DMFRATRELREAVKEAKHDNPGYLAVSVWPEMKEGHSLANVLLFKDNEWRTVVIDLTVYKTLLKD
Ga0306917_110645742	3300031719	Soil	SDGLFRATRELREAVKEAKRDNPGYLAVSVWSEMKDNHSIATVTLVKDNDWKTVVNDLTVYRTLIKEQP
Ga0318501_102905553	3300031736	Soil	LKKQNDGMFRATRELREAVREAKHDNPGYNAVSVWSDMKDNHSLATVTLVKDSDWKIAVIDLTVYRPLLKQ
Ga0318501_108493481	3300031736	Soil	GMFCATRELREAVKEAKRDNPGYSAVSVWSEMKDNHSVATVTLVKGNDWKTAVIDLTVYKPLIKE
Ga0318502_105503412	3300031747	Soil	AKKQNDGMFRATRELREAVKEAKRDNPGYNAVSVWSEMKDNHSVATVTLVKDNDWKIAVIDLTVYKPLIKE
Ga0307475_103630413	3300031754	Hardwood Forest Soil	KQNDGLFRATREIREAVKEAKHDNPGYVAVSVWPEMKDGHSLANVLLVKDNDWKTAVIDLTVYRTLIKD
Ga0318509_105467332	3300031768	Soil	LREAVKEAKRDNPGYLAVSVWSEMKDNHSIATVTLVKDNDWKTVVNDLTVYRTLIKEQP
Ga0318509_105478201	3300031768	Soil	DDLTEAKKQNDGMFRATRELREAVKEAKRDNPGYSAVSVWSEMKDNHSVATVTLVKGNDWKTAVIDLTVYKPLIKE
Ga0318498_105044681	3300031778	Soil	NDGMFRATRELREAVKEAKRDNPGYSAVSVWSEMKDNHSVATVTLVKGNDWKTAVIDLTVYKPLIKE
Ga0318547_106370971	3300031781	Soil	DDLTAAKKQSDGLFRATRELREAVKEAKRDNPGYLAVSVWSDMKDSHSIATVTLVKDNDWKTVVNDLTVYRTLIKEQP
Ga0318550_105001412	3300031797	Soil	HDNPGYNAVSVWSDMKDNHSLATVTLVKDSDWKIAVIDLTVYRSLLKQ
Ga0318512_102104133	3300031846	Soil	AKHDNPGYLAVSVWPEMKEGHSLANVLLFKDNEWRTVVIDLTVYKTLLKD
Ga0318527_102898802	3300031859	Soil	VKEAKHDNPGYNAVSVWPEMKDAHSLATVTLVKDNDWKTVVIDLTVYKTLIKE
Ga0306925_102213881	3300031890	Soil	ELREAVREAKHDNPGYNAVSVWSDMKDNHSLATVTLVKDSDWKIAVIDLTVYRPLLKQ
Ga0318551_103840142	3300031896	Soil	ATRELREAVKEAKRDNPGYLAVSVWSDMKDSHSVATVTLVKDNDWKTVVNDLTVYRTLIKEEP
Ga0306923_122962632	3300031910	Soil	LREAVKEAKRDNPGYLAVSVSSEMKEGHSLATVTLVKDNDWKSAVIDLTVYKTLIKE
Ga0306921_100037021	3300031912	Soil	VKEAKRDNPGYSAVSVWSEMKDNHSVATVTLVKGNDWKTAVIDLTVYKPLIKE
Ga0306921_101021481	3300031912	Soil	KQNDGMFRATRELREAVKEAKRDNPGYSAVSVWSEMKDNHSVATVMLVKENDWKTAVIDLTVYKPLIKE
Ga0306921_117796522	3300031912	Soil	DAMFRATRELREAVREAKHDNPGYNAVSVWSEMKDNHSLATVTLVKDNDWKTAVIDLTVYKPLLKQ
Ga0310912_109455671	3300031941	Soil	RATRELREAVKEAKRDNPGYSAVSVWSEMKDTHSVATVTLVKENDWKTAVIDLTVYKPLIKE
Ga0310913_106779891	3300031945	Soil	GGDDLAEAKKQNDGMFRATRELREAVREAKHDNPGYNAVSVWSDMKDNHSLATVTLVKDSDWKIAVIDLTVYRSLLKQ
Ga0306926_102624451	3300031954	Soil	ELREAVKEAKRDNPGYSAVSVSSEMKDNHSVATVLLVKDNDWKTAVVDLTVYKSLIKD
Ga0306926_117033602	3300031954	Soil	LREAVKEAKRDNPGDLAVSVWSDMKDSHSVATVTLVKDNDWKTVVNDLTVYRTLIKEEP
Ga0307479_110845582	3300031962	Hardwood Forest Soil	SKKQSDGLFRATREIREAVKEAKHDNPGYLAVSVWPEMKDGHSMANVQLVKDNDWKTAVVDLTVYRALIKE
Ga0307479_114206401	3300031962	Hardwood Forest Soil	REAVKEAKHDNPGYLAVSVSPEMKDGHSLASVMLVKGNDWKTALIDLTVYKVLIKE
Ga0318531_105013041	3300031981	Soil	DDLTAAKKQSDGLFRATRELREAVKEAKRDNPGYLAVSVWSDMKDSHSVATVTLVKDNDWKTVVNDLTVYRTLIKEEP
Ga0306922_101626103	3300032001	Soil	AKRDNPGYSAVSVWSEMKDSHSVATVTLVKDNDWKTAVIDLTVYKPLIKE
Ga0318569_105989492	3300032010	Soil	RELREAVKEAKRDNPGYSAVSVWSEMKDNHSVATVMLVKENDWKTAVIDLTVYKPLIKE
Ga0318556_104749961	3300032043	Soil	ATRELREAVKEAKRDNPGYNAVSVWSEMKDNHSVATVTLVKDNDWKIAVIDLTVYKPLIK
Ga0318532_101132671	3300032051	Soil	AVREAKHDNPGYNAVSVWSDMKDNHSLATVTLVKDSDWKIAVIDLTVYRPLLKQ
Ga0318505_100987283	3300032060	Soil	LTAAKKQNDGLFRATRELREAVKEAKRDNPGYLAVSVWPDTKDGHSVATVMLVKDNDWKSAVIDLTVYKPLIKE
Ga0306924_110449441	3300032076	Soil	KEAKQDNPGYLAVSVWPEMKDAHSLATVLLVRGNDWKTVVIDLTVYKTLLKE
Ga0306924_121306181	3300032076	Soil	FRATREIREAVKEAKHDNPGYLAVSVWPELKGGHSLANVMLVKENDWKTAVVDLTVYKPLIKD
Ga0318577_103792932	3300032091	Soil	LREAVREAKRDNPGYLAVSVWSEMKDSHSIATVTLVKDNDWKTVVNDLTVYRTLIKEQP
Ga0318577_104803821	3300032091	Soil	AAKKQSDGLFRATRELREAVKEAKRDNPGYLAVSVWSEMKDNHSIATVTLVKDNDWKTVVNDLTVYRTLIKEQP
Ga0318540_102339562	3300032094	Soil	EAVKEAKRDNPGYVAVSVWSEMKDSHSIATVTLVKDNDWKTVANDLTVYRTLIKEQP
Ga0306920_1043819801	3300032261	Soil	AKNQSDSLFRATRELREAVKEAKRDNPGYLAVSVSSEMKEGHSLATVTLVKDNDWKSAVIDLTVYKTLIKE
Ga0310914_103690193	3300033289	Soil	SLFRATRELREAVKEAKRDNPGYLAVSVWSEMKDSHSIATVTLVKDNDWKTVVNDLTVYRTLIKEQP
Ga0310914_106247643	3300033289	Soil	DDLTEAKKQNDGMFRATRELREAVKEAKRDNPGYSAVSVWSEMKDSHSVATVTLVKDNDWKTAVIDLTVYKPLIKE
Ga0318519_106453282	3300033290	Soil	GMFRATRELREAVREAKHDNPGYNAVSVWSEMKDNHSVATVTLVKDSDWKIAVIDLTVYRPLLKQ