Metagenome / Metatranscriptome Family F079303

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F079303
Family Type	Metagenome / Metatranscriptome
Number of Sequences	116
Average Sequence Length	59 residues
Representative Sequence	QVDFTIEDEGAFTTPWTASMIYLRDRGEWPEIACAENTFGFHYDQDAGIPTASKPDF
Number of Associated Samples	100
Number of Associated Scaffolds	116

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	98.28 %
% of genes from short scaffolds (< 2000 bps)	95.69 %
Associated GOLD sequencing projects	98
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.22

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (81.897 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (18.965 % of family members)
Environment Ontology (ENVO)	Unclassified (25.862 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (51.724 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 9.41% Coil/Unstructured: 90.59%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.22
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.22
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 116 Family Scaffolds
PF13442	Cytochrome_CBB3	5.17
PF01979	Amidohydro_1	3.45
PF13432	TPR_16	2.59
PF09423	PhoD	2.59
PF01436	NHL	1.72
PF00293	NUDIX	1.72
PF07394	DUF1501	0.86
PF03466	LysR_substrate	0.86
PF00171	Aldedh	0.86
PF12697	Abhydrolase_6	0.86
PF07883	Cupin_2	0.86
PF03972	MmgE_PrpD	0.86
PF02518	HATPase_c	0.86
PF00166	Cpn10	0.86
PF14347	DUF4399	0.86
PF12804	NTP_transf_3	0.86
PF07969	Amidohydro_3	0.86
PF00067	p450	0.86
PF05940	NnrS	0.86
PF00005	ABC_tran	0.86
PF00211	Guanylate_cyc	0.86
PF00034	Cytochrom_C	0.86
PF00583	Acetyltransf_1	0.86
PF01794	Ferric_reduct	0.86

COG ID	Name	Functional Category	% Frequency in 116 Family Scaffolds
COG0014	Gamma-glutamyl phosphate reductase	Amino acid transport and metabolism [E]	0.86
COG0234	Co-chaperonin GroES (HSP10)	Posttranslational modification, protein turnover, chaperones [O]	0.86
COG1012	Acyl-CoA reductase or other NAD-dependent aldehyde dehydrogenase	Lipid transport and metabolism [I]	0.86
COG2079	2-methylcitrate dehydratase PrpD	Carbohydrate transport and metabolism [G]	0.86
COG2114	Adenylate cyclase, class 3	Signal transduction mechanisms [T]	0.86
COG2124	Cytochrome P450	Defense mechanisms [V]	0.86
COG3213	Nitric oxide response protein NnrS	Signal transduction mechanisms [T]	0.86
COG4230	Delta 1-pyrroline-5-carboxylate dehydrogenase	Amino acid transport and metabolism [E]	0.86

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	81.90 %
Unclassified	root	N/A	18.10 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	81.90 %
Unclassified	root	N/A	18.10 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	81.90 %
Unclassified	root	N/A	18.10 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	31.90 %
Unclassified	root	N/A	18.10 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	10.34 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → environmental samples	2.59 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	29.31 %
Unclassified	root	N/A	18.10 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	8.62 %
uncultured bacterium 12AC_lac13	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium 12AC_lac13	2.59 %

Name	Rank	Taxonomy	Distribution
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	22.41 %
Unclassified	root	N/A	18.10 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	8.62 %
Sphingomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales	3.45 %
uncultured bacterium 12AC_lac13	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium 12AC_lac13	2.59 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	18.10 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	8.62 %
unclassified Hyphomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales	6.03 %
uncultured bacterium 12AC_lac13	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium 12AC_lac13	2.59 %
Sphingomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	1.72 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	18.10 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	8.62 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	6.03 %
uncultured bacterium 12AC_lac13	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium 12AC_lac13	2.59 %
Novosphingobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Novosphingobium	1.72 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	18.10 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	8.62 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	6.03 %
uncultured bacterium 12AC_lac13	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium 12AC_lac13	2.59 %
unclassified Novosphingobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Novosphingobium → unclassified Novosphingobium	1.72 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	18.10 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	8.62 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	6.03 %
uncultured bacterium 12AC_lac13	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium 12AC_lac13	2.59 %
Novosphingobium sp. Rr 2-17	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Novosphingobium → unclassified Novosphingobium → Novosphingobium sp. Rr 2-17	1.72 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.86 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001661\|JGI12053J15887_10018093	All Organisms → cellular organisms → Bacteria	3925	Open in IMG/M
3300002245\|JGIcombinedJ26739_101103962	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	680	Open in IMG/M
3300002917\|JGI25616J43925_10136364	Not Available	989	Open in IMG/M
3300004081\|Ga0063454_100965073	All Organisms → cellular organisms → Bacteria	681	Open in IMG/M
3300004082\|Ga0062384_100849344	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	642	Open in IMG/M
3300004153\|Ga0063455_101126748	All Organisms → cellular organisms → Bacteria	582	Open in IMG/M
3300005332\|Ga0066388_105387202	All Organisms → cellular organisms → Bacteria	649	Open in IMG/M
3300005365\|Ga0070688_101298246	All Organisms → cellular organisms → Bacteria	587	Open in IMG/M
3300005439\|Ga0070711_100472796	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1029	Open in IMG/M
3300005451\|Ga0066681_10495435	All Organisms → cellular organisms → Bacteria	753	Open in IMG/M
3300005561\|Ga0066699_10748856	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Novosphingobium → unclassified Novosphingobium → Novosphingobium sp. Rr 2-17	692	Open in IMG/M
3300005764\|Ga0066903_100158956	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Novosphingobium → unclassified Novosphingobium → Novosphingobium sp. Rr 2-17	3270	Open in IMG/M
3300005764\|Ga0066903_104221749	Not Available	769	Open in IMG/M
3300005921\|Ga0070766_10980124	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	581	Open in IMG/M
3300009012\|Ga0066710_101205491	All Organisms → cellular organisms → Bacteria	1173	Open in IMG/M
3300009038\|Ga0099829_10165041	Not Available	1776	Open in IMG/M
3300009090\|Ga0099827_11364772	All Organisms → cellular organisms → Bacteria	617	Open in IMG/M
3300009148\|Ga0105243_12400866	Not Available	566	Open in IMG/M
3300009792\|Ga0126374_11666403	All Organisms → cellular organisms → Bacteria	529	Open in IMG/M
3300009826\|Ga0123355_10547608	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1401	Open in IMG/M
3300010043\|Ga0126380_10927234	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	726	Open in IMG/M
3300010047\|Ga0126382_10295768	All Organisms → cellular organisms → Bacteria	1213	Open in IMG/M
3300010343\|Ga0074044_11080600	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	526	Open in IMG/M
3300010358\|Ga0126370_10317922	All Organisms → cellular organisms → Bacteria	1243	Open in IMG/M
3300010358\|Ga0126370_11223505	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	700	Open in IMG/M
3300010360\|Ga0126372_10755719	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	957	Open in IMG/M
3300010361\|Ga0126378_12090287	All Organisms → cellular organisms → Bacteria	646	Open in IMG/M
3300010362\|Ga0126377_13084540	Not Available	538	Open in IMG/M
3300010362\|Ga0126377_13617158	Not Available	500	Open in IMG/M
3300010366\|Ga0126379_10618139	All Organisms → cellular organisms → Bacteria	1171	Open in IMG/M
3300010366\|Ga0126379_12910910	All Organisms → cellular organisms → Bacteria	573	Open in IMG/M
3300010376\|Ga0126381_104526820	Not Available	536	Open in IMG/M
3300010398\|Ga0126383_10175005	All Organisms → cellular organisms → Bacteria → Proteobacteria	2032	Open in IMG/M
3300010398\|Ga0126383_13497321	All Organisms → cellular organisms → Bacteria	513	Open in IMG/M
3300011271\|Ga0137393_10881406	Not Available	764	Open in IMG/M
3300012200\|Ga0137382_10665862	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	745	Open in IMG/M
3300012200\|Ga0137382_11240959	All Organisms → cellular organisms → Bacteria	528	Open in IMG/M
3300012202\|Ga0137363_10956661	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	727	Open in IMG/M
3300012205\|Ga0137362_10192182	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1756	Open in IMG/M
3300012210\|Ga0137378_11143791	All Organisms → cellular organisms → Bacteria	693	Open in IMG/M
3300012212\|Ga0150985_119197586	All Organisms → cellular organisms → Bacteria	2128	Open in IMG/M
3300012361\|Ga0137360_11142015	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	673	Open in IMG/M
3300012362\|Ga0137361_10723210	All Organisms → cellular organisms → Bacteria	909	Open in IMG/M
3300012362\|Ga0137361_11415097	Not Available	618	Open in IMG/M
3300012362\|Ga0137361_11686026	All Organisms → cellular organisms → Bacteria	554	Open in IMG/M
3300012917\|Ga0137395_11075193	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	572	Open in IMG/M
3300012917\|Ga0137395_11106431	All Organisms → cellular organisms → Bacteria	561	Open in IMG/M
3300012925\|Ga0137419_10663168	All Organisms → cellular organisms → Bacteria → Proteobacteria	843	Open in IMG/M
3300012925\|Ga0137419_11020737	All Organisms → cellular organisms → Bacteria	686	Open in IMG/M
3300012929\|Ga0137404_12084411	All Organisms → cellular organisms → Bacteria	530	Open in IMG/M
3300012930\|Ga0137407_10524543	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1108	Open in IMG/M
3300012930\|Ga0137407_12060508	All Organisms → cellular organisms → Bacteria	545	Open in IMG/M
3300012957\|Ga0164303_10505325	All Organisms → cellular organisms → Bacteria	775	Open in IMG/M
3300014164\|Ga0181532_10537012	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	638	Open in IMG/M
3300016270\|Ga0182036_11121735	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	652	Open in IMG/M
3300016387\|Ga0182040_10346014	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1151	Open in IMG/M
3300016404\|Ga0182037_11018128	Not Available	722	Open in IMG/M
3300016404\|Ga0182037_11322040	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	636	Open in IMG/M
3300016445\|Ga0182038_10542857	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	997	Open in IMG/M
3300017970\|Ga0187783_11264104	Not Available	532	Open in IMG/M
3300018090\|Ga0187770_11494222	Not Available	550	Open in IMG/M
3300018482\|Ga0066669_10982949	All Organisms → cellular organisms → Bacteria	761	Open in IMG/M
3300020582\|Ga0210395_11448621	Not Available	500	Open in IMG/M
3300021086\|Ga0179596_10075936	All Organisms → cellular organisms → Bacteria	1471	Open in IMG/M
3300021171\|Ga0210405_11293635	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	536	Open in IMG/M
3300021432\|Ga0210384_10759722	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	866	Open in IMG/M
3300021475\|Ga0210392_10781111	All Organisms → cellular organisms → Bacteria	713	Open in IMG/M
3300021476\|Ga0187846_10407640	Not Available	558	Open in IMG/M
3300022756\|Ga0222622_10090796	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales	1853	Open in IMG/M
3300026319\|Ga0209647_1083861	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1565	Open in IMG/M
3300026355\|Ga0257149_1002731	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1949	Open in IMG/M
3300026446\|Ga0257178_1024879	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	727	Open in IMG/M
3300026475\|Ga0257147_1072517	All Organisms → cellular organisms → Bacteria	528	Open in IMG/M
3300026481\|Ga0257155_1039242	Not Available	722	Open in IMG/M
3300026481\|Ga0257155_1058529	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	609	Open in IMG/M
3300026496\|Ga0257157_1059391	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	648	Open in IMG/M
3300026551\|Ga0209648_10262502	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1269	Open in IMG/M
3300027660\|Ga0209736_1075603	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	931	Open in IMG/M
3300027678\|Ga0209011_1047516	All Organisms → cellular organisms → Bacteria → Acidobacteria	1319	Open in IMG/M
3300027738\|Ga0208989_10092431	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium 12AC_lac13	1031	Open in IMG/M
3300027843\|Ga0209798_10415182	All Organisms → cellular organisms → Bacteria	627	Open in IMG/M
3300027867\|Ga0209167_10308353	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium 12AC_lac13	857	Open in IMG/M
3300027874\|Ga0209465_10537027	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	582	Open in IMG/M
3300027900\|Ga0209253_10951552	All Organisms → cellular organisms → Bacteria	598	Open in IMG/M
3300027907\|Ga0207428_10421551	All Organisms → cellular organisms → Bacteria	975	Open in IMG/M
3300027911\|Ga0209698_10519402	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium 12AC_lac13	921	Open in IMG/M
3300027911\|Ga0209698_10567819	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	874	Open in IMG/M
3300027915\|Ga0209069_10740769	All Organisms → cellular organisms → Bacteria → Proteobacteria	581	Open in IMG/M
3300028877\|Ga0302235_10320286	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	669	Open in IMG/M
3300031058\|Ga0308189_10209296	All Organisms → cellular organisms → Bacteria	712	Open in IMG/M
3300031099\|Ga0308181_1118923	All Organisms → cellular organisms → Bacteria	590	Open in IMG/M
3300031114\|Ga0308187_10305199	All Organisms → cellular organisms → Bacteria → Acidobacteria	598	Open in IMG/M
3300031123\|Ga0308195_1032736	All Organisms → cellular organisms → Bacteria	692	Open in IMG/M
3300031124\|Ga0308151_1021247	All Organisms → cellular organisms → Bacteria	672	Open in IMG/M
3300031226\|Ga0307497_10527388	All Organisms → cellular organisms → Bacteria	587	Open in IMG/M
3300031421\|Ga0308194_10130767	All Organisms → cellular organisms → Bacteria	755	Open in IMG/M
3300031546\|Ga0318538_10088400	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1584	Open in IMG/M
3300031561\|Ga0318528_10254699	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	942	Open in IMG/M
3300031680\|Ga0318574_10251199	All Organisms → cellular organisms → Bacteria	1023	Open in IMG/M
3300031680\|Ga0318574_10424092	Not Available	778	Open in IMG/M
3300031726\|Ga0302321_103125832	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	540	Open in IMG/M
3300031736\|Ga0318501_10835487	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	511	Open in IMG/M
3300031751\|Ga0318494_10801586	Not Available	552	Open in IMG/M
3300031768\|Ga0318509_10385244	All Organisms → cellular organisms → Bacteria	784	Open in IMG/M
3300031833\|Ga0310917_10294492	All Organisms → cellular organisms → Bacteria	1097	Open in IMG/M
3300031890\|Ga0306925_11112487	Not Available	798	Open in IMG/M
3300031896\|Ga0318551_10865352	Not Available	527	Open in IMG/M
3300031897\|Ga0318520_10162544	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1301	Open in IMG/M
3300031910\|Ga0306923_10968336	Not Available	927	Open in IMG/M
3300031910\|Ga0306923_11404228	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	735	Open in IMG/M
3300031947\|Ga0310909_10683252	All Organisms → cellular organisms → Bacteria	854	Open in IMG/M
3300031954\|Ga0306926_11514857	Not Available	773	Open in IMG/M
3300032076\|Ga0306924_10239860	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2082	Open in IMG/M
3300032180\|Ga0307471_100260550	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales	1794	Open in IMG/M
3300032205\|Ga0307472_101750486	All Organisms → cellular organisms → Bacteria	616	Open in IMG/M
3300033290\|Ga0318519_11043454	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	509	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	96.55%
Host-Associated	Host-Associated	3.45%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	89.66%
Aquatic	Environmental → Aquatic	6.90%
Plants	Host-Associated → Plants	2.59%
Arthropoda	Host-Associated → Arthropoda	0.86%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	87.07%
Freshwater	Environmental → Aquatic → Freshwater	3.45%
Sediment	Environmental → Aquatic → Sediment	3.45%
Peat	Environmental → Terrestrial → Peat	1.72%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.72%
Cave	Environmental → Terrestrial → Cave	0.86%
Digestive System	Host-Associated → Arthropoda → Digestive System	0.86%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.86%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	72.41%
Loam	Environmental → Terrestrial → Soil → Loam	12.07%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.45%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	2.59%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	2.59%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	1.72%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.72%
Lentic	Environmental → Aquatic → Freshwater → Lentic	0.86%
Unclassified	Environmental → Terrestrial → Cave → Unclassified	0.86%
Gut	Host-Associated → Arthropoda → Digestive System → Gut	0.86%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.86%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	37.07%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	29.31%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	8.62%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	6.03%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.45%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	2.59%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	1.72%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.72%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.72%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	1.72%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.72%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment	0.86%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.86%
Unclassified	Environmental → Terrestrial → Cave → Unclassified → Unclassified	0.86%
Unclassified	Host-Associated → Arthropoda → Digestive System → Gut → Unclassified	0.86%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.86%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	18.97%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	17.24%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	12.07%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	8.62%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	6.90%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	4.31%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	4.31%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	3.45%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	2.59%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.72%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.72%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	1.72%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.72%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment	0.86%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.86%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	0.86%
Wetland Sediment	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Wetland Sediment	0.86%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.86%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.86%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	0.86%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.86%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.86%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.86%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	0.86%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	0.86%
Biofilm	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Biofilm	0.86%
Termite Gut	Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut	0.86%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.86%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.86%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.86%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001661	Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300002917	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_100cm	Environmental	Open in IMG/M
3300004081	Grasslands soil microbial communities from Hopland, California, USA - 2 (version 2)	Environmental	Open in IMG/M
3300004082	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3	Environmental	Open in IMG/M
3300004153	Grasslands soil microbial communities from Hopland, California, USA (version 2)	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005365	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005451	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130	Environmental	Open in IMG/M
3300005561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300009826	Embiratermes neotenicus P1 segment gut microbial communities from Petit-Saut dam, French Guiana - Emb289 P1	Host-Associated	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010343	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300014164	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_30_metaG	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300017970	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300018090	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300021086	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021475	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O	Environmental	Open in IMG/M
3300021476	Biofilm microbial communities from the roof of an iron ore cave, State of Minas Gerais, Brazil - TC_06 Biofilm (v2)	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300026319	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cm (SPAdes)	Environmental	Open in IMG/M
3300026355	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-02-A	Environmental	Open in IMG/M
3300026446	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-11-B	Environmental	Open in IMG/M
3300026475	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-12-A	Environmental	Open in IMG/M
3300026481	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-19-A	Environmental	Open in IMG/M
3300026496	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-69-A	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300027660	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M3 (SPAdes)	Environmental	Open in IMG/M
3300027678	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_M3 (SPAdes)	Environmental	Open in IMG/M
3300027738	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M1 (SPAdes)	Environmental	Open in IMG/M
3300027843	Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T4Bare3Fresh (SPAdes)	Environmental	Open in IMG/M
3300027867	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027874	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027900	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - BRP12 BR (SPAdes)	Environmental	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027911	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes)	Environmental	Open in IMG/M
3300027915	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013 (SPAdes)	Environmental	Open in IMG/M
3300028877	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N3_3	Environmental	Open in IMG/M
3300031058	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_184 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031099	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_152 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031114	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_182 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031123	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_196 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031124	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_140 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031226	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_S	Environmental	Open in IMG/M
3300031421	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_195 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031726	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_1	Environmental	Open in IMG/M
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental	Open in IMG/M
3300031751	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031896	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12053J15887_100180931	3300001661	Forest Soil	PYNPNYDDKYLKVDFTIEDPGTFTTPWNAVMIYLRDREAFPEIVCAEGRMGFHNDEGGQIPTAAKPEF*
JGIcombinedJ26739_1011039622	3300002245	Forest Soil	WRPGGPVNPDYKDKFLQVRFTIEDPGAFTTPWTASMVYLRDRLEWQEIACAENTLGFHHDKDADVPHADKTDF*
JGI25616J43925_101363642	3300002917	Grasslands Soil	FTTPWTATMIYLRDRLEWPEVVCAENPFGFHSDKDLGIPRADKADF*
Ga0063454_1009650732	3300004081	Soil	PAGRINPGNYKDKYLQVDFTIEDEGTFTTPWTASMIYLRDRAEWPEIACAENRLGFHNDQDGGFPTASKPDF*
Ga0062384_1008493442	3300004082	Bog Forest Soil	AFTTPWTATIIYLRDRLEWPEIACAENTLGFHHNKDADVPSANKPDF*
Ga0063455_1011267482	3300004153	Soil	QVDFTIEDEGTFTTPWTASMIYLRDRAEWPEIACAENRLGFHNDQDGGFPTASKPDF*
Ga0066388_1053872022	3300005332	Tropical Forest Soil	IKPDTYKDKYLQVDFTIEDEGTFTTTWTASMIYLRDRAEWPEIACAENRLGFHNDQDGGFPTASKPDF*
Ga0070688_1012982462	3300005365	Switchgrass Rhizosphere	LQVDFTIEDEGAFTTPWTASMIYLRDRGEWPEIACAENRLGFHNDQDGGFPTASKPDF*
Ga0070711_1004727962	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	PAGPVNPDYKDKYLQVHFTIEDPGAFTTPWTATIIYLRDHLEWPEIACAENTLGFHHDKDADVPHADKPDF*
Ga0066681_104954352	3300005451	Soil	FTTPWTAIMIYLREHGAFPESACAEGRLGFHNDQNAQIPTAFKPDF*
Ga0066699_107488562	3300005561	Soil	GGPVDPAYSDKYLKIEFTIEDAGAFTAPWTATMVYLRNRRVEWPETVCAENPFGFYHDKEAGVPRADKPDF*
Ga0066903_1001589565	3300005764	Tropical Forest Soil	PGAFTTPWTASMIYLRDRDEWPEIACAENRLGFHHNEQASIPTADKPDF*
Ga0066903_1042217492	3300005764	Tropical Forest Soil	HFTIQDEGAFTTPWTATMIYLRDRGEWPEVDCAENRFGFEHEADVPKAGKPDF*
Ga0070766_109801242	3300005921	Soil	VRFTIEDPGAFTTPWTASMVYLRDRLEWQEIACAENTLGFHHDKDADIPHADRPDF*
Ga0066710_1012054911	3300009012	Grasslands Soil	QVDFTIEDEGAFTTPWTASMIYLRDRGEWPEIACAENTFGFHYDQDAGIPTASKPDF
Ga0099829_101650413	3300009038	Vadose Zone Soil	AGTFTTPWTASVIYARDRLEWSEVSCAENPAGFHGDKDIGVPHAVKADF*
Ga0099827_113647722	3300009090	Vadose Zone Soil	AFTTPWTASMIYLRDRGEWPEIACAENRFGFHYDQDAGIPTASKPDF*
Ga0105243_124008661	3300009148	Miscanthus Rhizosphere	GKFLKVDLTIEDEGTFTTPWTASVVYLKSNAEWPEVACAENPAGFYSDKEAGVPTAAKPDF*
Ga0126374_116664031	3300009792	Tropical Forest Soil	FTTPWTASMIYLRDRAEWPEIACAENRLGFHNDQDGGFPTANKPDF*
Ga0123355_105476081	3300009826	Termite Gut	NDKYLHVHFTVEDPGTFTAPWTASMVYQRDRLDWPETICAENRFGFEHEAEVPRATKADF
Ga0126380_109272342	3300010043	Tropical Forest Soil	WTASVIYARDRLEWPEVSCAENPAGFPGDKDIGRLPVAAKPDF*
Ga0126382_102957681	3300010047	Tropical Forest Soil	LQVDFMIEDEGTFTSPWTASMIYLRDRGEWPEVACAENRLGFHNDQDGGFPTANKPDF*
Ga0074044_110806002	3300010343	Bog Forest Soil	TIEDQGAFTTPWTATIIYLRDRLEWPEIACAENTLGFHHNKDADVPSANKPDF*
Ga0126370_103179224	3300010358	Tropical Forest Soil	FTIEDEGTFTTPWTASMIYLRDRAEWPEIACAENRLGFHNDQDGGFPTANKPDF*
Ga0126370_112235051	3300010358	Tropical Forest Soil	KYLQVDFTIEDAGAFTTPWQASVIYLRDRLEWPEVSCAENPAGFHSDKDIGVPRAEKPDF
Ga0126372_107557191	3300010360	Tropical Forest Soil	AFTTPWTASVLYVRDRLEWPEVVCAENTFSFHGEKDLGVPLASKPDF*
Ga0126378_120902872	3300010361	Tropical Forest Soil	TIEDPGAYTTPWTADMIYLRDRLEWPEQACAENTFGFHHDRDAHLPSAERPDF*
Ga0126377_130845402	3300010362	Tropical Forest Soil	GPVNTGNYKDKYLQIDFTIEDEGAFTTRWTASMIYLRDRGEWPEIACAENRLGFHHNEQASIPTADKPDF*
Ga0126377_136171581	3300010362	Tropical Forest Soil	YADKYLQVDFIIEDEGTFTTPWTASVIYARDRGEWPEISCAENPAGFHNDKEIGIPHADKADF*
Ga0126379_106181391	3300010366	Tropical Forest Soil	TIEDAGAFTTPWTASIVYLRDRDEWPEISCAETTMGFHYIKDGGIPTASKPDF*
Ga0126379_129109102	3300010366	Tropical Forest Soil	YLQVDFTIEDAGAFTTPWTASIVYLRDRDEWPEVSCAETTLGFHYIKDGGIPTASKPDF*
Ga0126381_1045268201	3300010376	Tropical Forest Soil	EDEGAFTTPWTASVIYLRDRLEWPEVSCAENPAGFHHDQDADIPRADKPDF*
Ga0126383_101750053	3300010398	Tropical Forest Soil	PLNPEYADKYLQVDFTVEDEGAFTTPWTASVIYLRDRLEWPEVSCAENPAGFHHDQDADIPRADKPDF*
Ga0126383_134973212	3300010398	Tropical Forest Soil	VDFTIEDEGTFTTPWTASMIYLRDRAEWPEIACAENRLGFHNDQDGGFPTANKPDF*
Ga0137393_108814061	3300011271	Vadose Zone Soil	KYLQVDFTVEDAGTFTTPWTASVIYARDRLEWSEVSCAENPAGFHGDKDIGLPVAAKPDF
Ga0137382_106658622	3300012200	Vadose Zone Soil	VMIYLRDREAFPEIVCAEGRLGFHNDEGGQIPTAAKPEF*
Ga0137382_112409591	3300012200	Vadose Zone Soil	VDFTIEDPGTFTTPWTAIMIYLRDRAAFPEQACAEGRMGFHNDEGAQIPTAAKPDF*
Ga0137363_109566612	3300012202	Vadose Zone Soil	EGTFTTPWTASVIYARDRLEWPEISCAENPAGFHNDKDIGIPHADKADF*
Ga0137362_101921823	3300012205	Vadose Zone Soil	WRPAGPFAPNYADKYLQVDFTIEDAGTFTTPWTASVIYARDRLEWSEVSCAENPAGFHGDKDVGLPVAAKPDF*
Ga0137378_111437911	3300012210	Vadose Zone Soil	YADKYLRVDFTIEDPGTFTTPWTAIMIYLRDRAAFPEQACAEGRMGFHNDEGAQIPTAAKPDF*
Ga0150985_1191975861	3300012212	Avena Fatua Rhizosphere	RPAGPYRQDYKDKYLQIDFTIDDPGTFTTPWSATMIYLRDRNEWPEAACAEAPFGFHHSSDAVLPQAEKPDF*
Ga0137360_111420152	3300012361	Vadose Zone Soil	EDAGTFTTPWTASVIYARDRLEWPEISCAENPAGFHNDKDVGIPHADKADF*
Ga0137361_107232102	3300012362	Vadose Zone Soil	AFTQPWTAHMIYLRDRGEWPEVACAENTFGFHVDQNVGIPTAKRTDF*
Ga0137361_114150972	3300012362	Vadose Zone Soil	AGTFTTPWTASVIYARDRLEWPEISCAENPAGFHNDKDIGIPHADKADF*
Ga0137361_116860261	3300012362	Vadose Zone Soil	NYKDKYLQVDFTIEDEGTFTTPWTASMIYLRDRGEWPEVACAENRLGFHNDQDGGFPTASKPDF*
Ga0137395_110751931	3300012917	Vadose Zone Soil	FTIEDEGAFTTPWTATMVYLRDRLEWPEVSCAENPSGFYHDPEAGVPRADKPDF*
Ga0137395_111064312	3300012917	Vadose Zone Soil	GPYNPNYKDKYLQVDLTVEDEGTFTTPWTASMIYLRDRGEWPEVACAENRLGFHNDQDGGFPTASKPDF*
Ga0137419_106631681	3300012925	Vadose Zone Soil	VNPNYKDKYLRIQFTIEDEGAFTTPWTASMVYLRDRLEWPEVVCAENPSGFYHDKDVGVPQAAKPDF*
Ga0137419_110207371	3300012925	Vadose Zone Soil	GAFTRPWTAHMIYLRDRGEWPEVACAENTFGFHVDQNVGIPTAKRPDF*
Ga0137404_120844111	3300012929	Vadose Zone Soil	YKDKYLQVDFTIEDEGTFTTPWTASMIYLRDRGEWPEIACAENRLGFHNDQDGGFPTASKPDF*
Ga0137407_105245431	3300012930	Vadose Zone Soil	RPAGPMAVSPDYKDKYLQIHFTIRDEGAFTTPWTASVLYVRDRLEWPEVVCAENTFSFHGEKDLGVPLASKPDF*
Ga0137407_120605081	3300012930	Vadose Zone Soil	GGAVNPNYKDKYLQVDFTIEDEGAFTTPWTASMIYLRDRGEWPEIACAENRFGFHYDQDAGIPTASKPDF*
Ga0164303_105053251	3300012957	Soil	TIEDEGAFTTSVTASMIYLRDRGEWPEIACAENRLGFHNDQDGGFPTASKPDF*
Ga0181532_105370122	3300014164	Bog	GGPISADYNDKYLQVHFTIEDEGAFTTPWTATVVYVRDRLEWPEVACAENTFGFHSDKDLGIPTAAKADF*
Ga0182036_111217352	3300016270	Soil	EGAFTTPWTASVIYLRDRLEWPEVVCAENTFGFHADKELGVPHADKPDF
Ga0182040_103460143	3300016387	Soil	EDPGAYTTPWSADMIYLRDRLEWPEQACAENTFGFHHDRDAHLPSAERPDF
Ga0182037_110181281	3300016404	Soil	PDYKDKYLQVHFTIEDPGAFTTPWTATIIYLRDRLEWPEIACAENTLGFHHDKDADVPHADKPDF
Ga0182037_113220401	3300016404	Soil	PVDANYKDKFLRIQFTIEDEGAFTTPWTASIVYVRDYLEWPEVACAENPSGFYHDKDAGVPRADKPDF
Ga0182038_105428571	3300016445	Soil	PAGPPRANYDDKYLLVHFTIEDPGAYTTPWSADMIYLRDRLEWPEQACAENTFGFHHDRDAHLPSAERPDF
Ga0187783_112641042	3300017970	Tropical Peatland	TTPWTASVIYARDRLEWSEVSCAENPAGFHADKDIGVPVAAKPDF
Ga0187770_114942222	3300018090	Tropical Peatland	RPAGPFAPNYADKYLQVDFTIDDAGTFTTPWTASVIYARDRLEWSEVSCAENPAGFHSDKDIGVPIAAKPDF
Ga0066669_109829491	3300018482	Grasslands Soil	LVLSVCLTSHNYCDKSLLLDCTIEVPGTITHPWTAHMIYLRDLVELPEVIFAENTFGFHYNQEVGFPTAKKPDF
Ga0210395_114486211	3300020582	Soil	GPVNPDYKDKYLQVHFTIEDPGAFMTPWTATIIYLRDRLEWPEIACAENPLGFHHDKDADIPHADRPDF
Ga0179596_100759361	3300021086	Vadose Zone Soil	PNYEDKYLQIDFTIEDPGAFTQPWTAHMIYLRDRGEWPEVACAENTFGFHVDQNVGIPTAKRTDF
Ga0210405_112936352	3300021171	Soil	IEDQGAFTTPWTASMIYLRDRLEWPEVACAENTFGFHHSKDAGVPRADAPDF
Ga0210384_107597222	3300021432	Soil	HFTVEDAGAFTTPWTASMVYLRDHLEWPEIACAENTFGFHDKDADVPRSDKPDF
Ga0210392_107811112	3300021475	Soil	TVEDEGAFTTPWTATVIYLRDRGEWPEVACAENPAGFHHDKDADIPMAAKPDF
Ga0187846_104076401	3300021476	Biofilm	DKYLQVDLTVADEGAFTTPWTASVIYVRDYLEWPEVSCAENPAGFHSDKDIGVPHATKAD
Ga0222622_100907961	3300022756	Groundwater Sediment	NPNYKDKYLQVDFTIEDEGTFTTPWTASMIYLRDRGEWPEIACAENRFGFHYDQDAGIPTASKPDF
Ga0209647_10838611	3300026319	Grasslands Soil	DKYLQVHFTIEDDGAFTTPWTTTVIYLRDRLEWPEVVCAENTFGFHSDKEIGVPHAERPD
Ga0257149_10027313	3300026355	Soil	FTVEDAGTFTTPWTASVIYARDRLEWSEVSCAENPAGFHGDKDIGLPVAAKPDF
Ga0257178_10248792	3300026446	Soil	VDFMIEDEGTFTTPWTASVIYARDRLEWPEISCAENPAGFHNDKDIGIPHADKADF
Ga0257147_10725172	3300026475	Soil	AKENWRPAGRINPGNYKDKYLQVDFTIEDESTFTTPWTASMIYLRDRGEWPEIACAENRLGFHNDQDGGFPTASKPDF
Ga0257155_10392421	3300026481	Soil	NPNYDDKYLQVHFTIEDEGTFTTPWTATVIYLRDRLEWPEIVCAENTFGFHSDKEIGVPRADKSDF
Ga0257155_10585292	3300026481	Soil	PWTASVIYARDRLEWSEVSCAENPAGFHSDKDIGVPHAVKADF
Ga0257157_10593912	3300026496	Soil	RPMSLSPWTASVIYARDRLEWSEVSCAENPAGFHGDKDIGLPVAAKPDF
Ga0209648_102625021	3300026551	Grasslands Soil	KGALAPRRTLRPNYADKYLQVDFTIEDEGTFTTPWTASVIYARDRLEWPEISCAENPAGFHNDKDVGIPHADKADF
Ga0209736_10756031	3300027660	Forest Soil	DVKENWRAQPAPNYRGKYLQLQFTIDDQGAFTTPWTATMVYLRDRLEWPEIACAENTFGFHHNKDADVPSADKPDF
Ga0209011_10475162	3300027678	Forest Soil	LFSIEDEGAFTTPWTAIMIYLRDRGEFPEAACAENTFSFHNNQDADFPHADKPDF
Ga0208989_100924311	3300027738	Forest Soil	WRPAGPPNPNYKDKYLQIDFTIEDPGAFTRPWTAHMIYLRDRGEWPEVACAENTFGFHVDQNVGIPTAKKADF
Ga0209798_104151822	3300027843	Wetland Sediment	GPYNPNYKDKYLQVDFTIEDDGAFTTPWTATMIYLRDRGEWPEVACAESRLGFHYNQDGGIPTANKPEF
Ga0209167_103083531	3300027867	Surface Soil	GARENWRPGGPVNPNYKDKYLQVRFTIEDAGAFTTPWTASMVYLRDRLEWPEIACAENTFGFHHGADADVPQAERPDF
Ga0209465_105370271	3300027874	Tropical Forest Soil	RAAKENWRPAGPINPDYNDKYLQVHFTIEDEGAFTTPWTATVIYIRDRLEWPEVVCAENTFGFHSDKELGVPHADKPDF
Ga0209253_109515521	3300027900	Freshwater Lake Sediment	QFTIEDEGAYTSPWTASMVYVRDRLEWPEQVCAENPFGFYHDKEAGVPQADKPDF
Ga0207428_104215511	3300027907	Populus Rhizosphere	FTIEDEGAFTTPWTASMIYLRDRGEWPEIACAENRLGFHNDQDGGFPNASKPDF
Ga0209698_105194022	3300027911	Watersheds	DKYLKVQFSIEDEGAFTTPWTASMVYLRDRLEWPEVACAENPFGFYQDKEAGVPRADRPD
Ga0209698_105678192	3300027911	Watersheds	PGGPVNPNYKDKYLQVDFTIEDAGAFTTPWTATMVYLRDRLEWPEVACAENTFGFHHSKDADVPRADKPDF
Ga0209069_107407691	3300027915	Watersheds	DKYLRVHFTIEDEGAYTTPWTATMIYLRDYLNWPEIACAENTFGFHASRGAEIPHADKPD
Ga0302235_103202862	3300028877	Palsa	PNYKDKYLQVDFTVEDKGAFTTPWTASIVYLRDRLEWPEIACAENPAGFHHDRDADVPSADRPDF
Ga0308189_102092961	3300031058	Soil	EGTFTTPWTASMIYLRDRAEWPEVACAENRLGFHNDQDGGFPTASKPDF
Ga0308181_11189231	3300031099	Soil	LQVDFTIEDEGTFTTPWTASMIYLRDRGEWPEIACAENRLGFHNDQDGGFPTASKPDF
Ga0308187_103051991	3300031114	Soil	VHFTIEDQGAFTTPWTATMIYLRDRGEWPESACAEGRFGFHNTAGADLPQAAKADF
Ga0308195_10327362	3300031123	Soil	GTFTTPWTASMIYLRDRGEWPEVACAENRLGFHNDQDGGFPTASKPDF
Ga0308151_10212471	3300031124	Soil	GAFTTPWTASMIYLRDRGEWPEIACAENRLGFHYDQDAGIPTANKPDF
Ga0307497_105273881	3300031226	Soil	FTTPWTASMIYLRDRGEWPEIACAENRFGFHYDQAAGIPTASKPDF
Ga0308194_101307671	3300031421	Soil	RPAGPINPGNYQDKYLQVDFTIEDEGTFTTPWTASMIYLRDRAEWPEIACAENRLGFHNDQDGGFPTASKQDF
Ga0318538_100884003	3300031546	Soil	TIEDPGAYTTPWTADMIYLRDRLEWPEQACAENTFGFHHDRDAHLPSAERPDF
Ga0318528_102546992	3300031561	Soil	GGPFAPNYADKYLQVDFTVEDEGTFTTPWTASTIYARDRGEWPEISCAENPAGFHTDKDIGIPHADKADF
Ga0318574_102511992	3300031680	Soil	HFTIEDPGAYTTPWSADMIYLRDRLEWPEQACAENTFGFHHDRDAHLPSAERPDF
Ga0318574_104240921	3300031680	Soil	KDKYLQVHFTIEDEGAFTTPWTATIIYLRDRLEWPEIACAENTLGFHHDKDADVPHADKPDF
Ga0302321_1031258322	3300031726	Fen	MGTRRKRELARPAPNYGGKYLQLQFTVEDEGAFTTPWTATIVYLRDRLEWPEIACAENTLGFHHDKDADVPSADKPDF
Ga0318501_108354871	3300031736	Soil	YLLVHFTIEDPGAYTTPWSADMIYLRDRLEWPEQACAENTFGFHHDRDAHLPSAERPDF
Ga0318494_108015862	3300031751	Soil	HFTIEDPGAYTTPWTADMIYLRDRLEWPEQACAENTFGFHHDRDAHLPSAERPDF
Ga0318509_103852442	3300031768	Soil	EDPGAYTTPWTADMIYLRDRLEWPEQACAENTFGFHHDRDAHLPSAERPDF
Ga0310917_102944921	3300031833	Soil	YLLVHFTIEDPGAYTTPWTADMIYLRDRLEWPEQACAENTFGFHHDLDAHLPSAERPDF
Ga0306925_111124871	3300031890	Soil	GGPANTSNYNDKYLQVHFTIQDEGAFTTPWTATMIYLRDRGEWPEVDCAENRFGFEHEADVPKAGKADF
Ga0318551_108653521	3300031896	Soil	YKDKYLKVEFKIEDEGAFTTPWTATMVYLRDRLEWPEEACAENPSGFYKDKDAGIPRALKPDF
Ga0318520_101625443	3300031897	Soil	PGAYTTPWTADMIYLRDRLEWPEQACAENTFGFHHDRDAHLPSAERPDF
Ga0306923_109683362	3300031910	Soil	KVEFKIEDEGAFTTPWTATMVYLRDRLEWPEEACAENPSGFYKDKDAGIPRALKPDF
Ga0306923_114042281	3300031910	Soil	PDYKDKYLQVHFTIEDEGAFTTPWTATIIYLRDRLEWPEIACAENTLGFHHDKDADVPHADKPDF
Ga0310909_106832521	3300031947	Soil	AYTTPWTADMIYLRDRLEWPEQACAENTFGFHHDRDAHLPSAERPDF
Ga0306926_115148572	3300031954	Soil	YLKVEFKIEDEGAFTTPWTATMVYLRDRLEWPEEACAENPSGFYKDKDAGIPRALKPDF
Ga0306924_102398601	3300032076	Soil	DLGAYTTPWTADMIYLRDRLEWPEQACAENTFGFHHDLDAHLPSAERPDF
Ga0307471_1002605501	3300032180	Hardwood Forest Soil	AFTTPWTASMIYLRDRGEWPEIACAENRLGFHHNEQASIPTADKPDF
Ga0307472_1017504861	3300032205	Hardwood Forest Soil	KYLQVDFTIEDEGTFTTPWTASMIYLRDRGEWPEIACAENRLGFHNDPDGGFPTASKPDF
Ga0318519_110434542	3300033290	Soil	DKYLQVHVTIEDEGAFTTPWTATIIYLRDRLEWPEIACAENTLGFHHDKDADVPHADKPD

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F079303

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences