Metagenome / Metatranscriptome Family F079296

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F079296
Family Type	Metagenome / Metatranscriptome
Number of Sequences	116
Average Sequence Length	79 residues
Representative Sequence	MIENNWWELYRAAVLEIDRSKLRDRVKAAEDAIRARASLGGQVSSEERISIQDAMAALLVLRRELGHSRVDNKHHHRDGQESR
Number of Associated Samples	73
Number of Associated Scaffolds	116

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	86.21 %
% of genes near scaffold ends (potentially truncated)	0.00 %
% of genes from short scaffolds (< 2000 bps)	73.28 %
Associated GOLD sequencing projects	63
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.65

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (61.207 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil (25.000 % of family members)
Environment Ontology (ENVO)	Unclassified (46.552 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (91.379 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 50.45% β-sheet: 0.00% Coil/Unstructured: 49.55%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.65
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.65
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 116 Family Scaffolds
PF12844	HTH_19	3.45
PF00072	Response_reg	2.59
PF13426	PAS_9	1.72
PF01381	HTH_3	1.72
PF01904	DUF72	1.72
PF00990	GGDEF	1.72
PF04014	MazE_antitoxin	1.72
PF13590	DUF4136	0.86
PF00884	Sulfatase	0.86
PF07335	Glyco_hydro_75	0.86
PF14534	DUF4440	0.86
PF07676	PD40	0.86
PF13738	Pyr_redox_3	0.86
PF00589	Phage_integrase	0.86
PF13401	AAA_22	0.86
PF08308	PEGA	0.86
PF12728	HTH_17	0.86
PF07238	PilZ	0.86
PF00989	PAS	0.86

COG ID	Name	Functional Category	% Frequency in 116 Family Scaffolds
COG1801	Sugar isomerase-related protein YecE, UPF0759/DUF72 family	General function prediction only [R]	1.72

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.21 %
All Organisms	root	All Organisms	38.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.21 %
cellular organisms	root	All Organisms → cellular organisms	38.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.21 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	38.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.21 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	21.55 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.86 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.21 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	12.07 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	3.45 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.86 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.21 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	12.07 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	3.45 %
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	0.86 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.21 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	12.07 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3.45 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.86 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.21 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	12.07 %
Acidipila	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidipila	0.86 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.86 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.21 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	12.07 %
unclassified Acidipila	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidipila → unclassified Acidipila	0.86 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.86 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.21 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	12.07 %
Acidipila sp.	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidipila → unclassified Acidipila → Acidipila sp.	0.86 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.86 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.86 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001082\|JGI12664J13189_1004176	Not Available	1178	Open in IMG/M
3300001131\|JGI12631J13338_1033608	Not Available	524	Open in IMG/M
3300001151\|JGI12713J13577_1000158	All Organisms → cellular organisms → Bacteria	8534	Open in IMG/M
3300001170\|JGI12704J13340_1000329	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	7767	Open in IMG/M
3300002245\|JGIcombinedJ26739_100005758	All Organisms → cellular organisms → Bacteria → Acidobacteria	9544	Open in IMG/M
3300003352\|JGI26345J50200_1030593	Not Available	586	Open in IMG/M
3300003370\|JGI26337J50220_1006754	Not Available	1356	Open in IMG/M
3300003370\|JGI26337J50220_1013129	Not Available	966	Open in IMG/M
3300003505\|JGIcombinedJ51221_10080401	Not Available	1281	Open in IMG/M
3300003505\|JGIcombinedJ51221_10257947	Not Available	709	Open in IMG/M
3300003505\|JGIcombinedJ51221_10463979	Not Available	511	Open in IMG/M
3300004080\|Ga0062385_10050002	Not Available	1803	Open in IMG/M
3300004080\|Ga0062385_10472462	Not Available	767	Open in IMG/M
3300004080\|Ga0062385_10651100	Not Available	673	Open in IMG/M
3300004082\|Ga0062384_100019622	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidipila → unclassified Acidipila → Acidipila sp.	2838	Open in IMG/M
3300004082\|Ga0062384_100109178	Not Available	1496	Open in IMG/M
3300004082\|Ga0062384_100195355	Not Available	1189	Open in IMG/M
3300004082\|Ga0062384_100364432	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	920	Open in IMG/M
3300004091\|Ga0062387_100015138	All Organisms → cellular organisms → Bacteria	3015	Open in IMG/M
3300004091\|Ga0062387_100307082	Not Available	1025	Open in IMG/M
3300004092\|Ga0062389_100068225	All Organisms → cellular organisms → Bacteria	2964	Open in IMG/M
3300004092\|Ga0062389_101768219	Not Available	798	Open in IMG/M
3300004635\|Ga0062388_101182162	Not Available	756	Open in IMG/M
3300005591\|Ga0070761_10001108	All Organisms → cellular organisms → Bacteria	16884	Open in IMG/M
3300005591\|Ga0070761_10503516	Not Available	747	Open in IMG/M
3300005602\|Ga0070762_10652463	Not Available	702	Open in IMG/M
3300014489\|Ga0182018_10240971	Not Available	998	Open in IMG/M
3300014501\|Ga0182024_10033023	All Organisms → cellular organisms → Bacteria → Acidobacteria	8793	Open in IMG/M
3300019165\|Ga0184589_118433	Not Available	693	Open in IMG/M
3300019185\|Ga0184587_112390	Not Available	703	Open in IMG/M
3300019188\|Ga0184599_116044	Not Available	563	Open in IMG/M
3300019194\|Ga0184586_141234	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	762	Open in IMG/M
3300020579\|Ga0210407_10388055	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1093	Open in IMG/M
3300020580\|Ga0210403_10022076	All Organisms → cellular organisms → Bacteria	5083	Open in IMG/M
3300020581\|Ga0210399_11090782	Not Available	639	Open in IMG/M
3300020582\|Ga0210395_10023623	All Organisms → cellular organisms → Bacteria	4520	Open in IMG/M
3300020582\|Ga0210395_10140125	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1801	Open in IMG/M
3300020583\|Ga0210401_10009729	All Organisms → cellular organisms → Bacteria	9441	Open in IMG/M
3300020583\|Ga0210401_11627501	Not Available	503	Open in IMG/M
3300021180\|Ga0210396_10674452	Not Available	894	Open in IMG/M
3300021180\|Ga0210396_10828695	Not Available	792	Open in IMG/M
3300021401\|Ga0210393_10040653	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	3650	Open in IMG/M
3300021403\|Ga0210397_11029552	Not Available	639	Open in IMG/M
3300021404\|Ga0210389_10543342	Not Available	914	Open in IMG/M
3300021406\|Ga0210386_10077621	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2686	Open in IMG/M
3300021433\|Ga0210391_10938840	Not Available	674	Open in IMG/M
3300022722\|Ga0242657_1065295	Not Available	832	Open in IMG/M
3300022731\|Ga0224563_1012034	Not Available	713	Open in IMG/M
3300023658\|Ga0184591_104155	Not Available	542	Open in IMG/M
3300024227\|Ga0228598_1018458	All Organisms → cellular organisms → Bacteria	1375	Open in IMG/M
3300024227\|Ga0228598_1134503	Not Available	504	Open in IMG/M
3300024271\|Ga0224564_1085061	Not Available	636	Open in IMG/M
3300026356\|Ga0257150_1041570	Not Available	673	Open in IMG/M
3300026467\|Ga0257154_1000073	All Organisms → cellular organisms → Bacteria → Acidobacteria	6484	Open in IMG/M
3300026467\|Ga0257154_1001714	All Organisms → cellular organisms → Bacteria → Acidobacteria	2555	Open in IMG/M
3300026467\|Ga0257154_1015172	Not Available	1089	Open in IMG/M
3300026467\|Ga0257154_1052083	Not Available	635	Open in IMG/M
3300026467\|Ga0257154_1052240	Not Available	634	Open in IMG/M
3300026467\|Ga0257154_1058227	Not Available	603	Open in IMG/M
3300027034\|Ga0209730_1003968	All Organisms → cellular organisms → Bacteria	1227	Open in IMG/M
3300027173\|Ga0208097_1041620	Not Available	534	Open in IMG/M
3300027334\|Ga0209529_1009159	Not Available	1624	Open in IMG/M
3300027432\|Ga0209421_1053395	Not Available	807	Open in IMG/M
3300027505\|Ga0209218_1004169	All Organisms → cellular organisms → Bacteria → Acidobacteria	2251	Open in IMG/M
3300027545\|Ga0209008_1125508	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	568	Open in IMG/M
3300027559\|Ga0209222_1004107	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3220	Open in IMG/M
3300027590\|Ga0209116_1000028	All Organisms → cellular organisms → Bacteria	21167	Open in IMG/M
3300027674\|Ga0209118_1122527	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	726	Open in IMG/M
3300027729\|Ga0209248_10095850	Not Available	896	Open in IMG/M
3300027737\|Ga0209038_10001523	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	6904	Open in IMG/M
3300027737\|Ga0209038_10062020	Not Available	1120	Open in IMG/M
3300027737\|Ga0209038_10135708	Not Available	745	Open in IMG/M
3300027767\|Ga0209655_10001302	All Organisms → cellular organisms → Bacteria	9283	Open in IMG/M
3300027767\|Ga0209655_10001907	All Organisms → cellular organisms → Bacteria	7538	Open in IMG/M
3300027767\|Ga0209655_10003401	All Organisms → cellular organisms → Bacteria	5589	Open in IMG/M
3300027767\|Ga0209655_10068897	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1177	Open in IMG/M
3300027767\|Ga0209655_10126278	Not Available	850	Open in IMG/M
3300027768\|Ga0209772_10115510	Not Available	831	Open in IMG/M
3300027783\|Ga0209448_10098511	Not Available	979	Open in IMG/M
3300027783\|Ga0209448_10187305	Not Available	688	Open in IMG/M
3300027795\|Ga0209139_10042421	Not Available	1604	Open in IMG/M
3300027829\|Ga0209773_10395890	Not Available	573	Open in IMG/M
3300027853\|Ga0209274_10001959	All Organisms → cellular organisms → Bacteria	10325	Open in IMG/M
3300027853\|Ga0209274_10002115	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	9922	Open in IMG/M
3300027853\|Ga0209274_10117895	All Organisms → cellular organisms → Bacteria	1320	Open in IMG/M
3300027853\|Ga0209274_10255772	Not Available	897	Open in IMG/M
3300027879\|Ga0209169_10346844	Not Available	781	Open in IMG/M
3300027884\|Ga0209275_10648399	Not Available	607	Open in IMG/M
3300028015\|Ga0265353_1012621	Not Available	780	Open in IMG/M
3300028037\|Ga0265349_1013948	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	711	Open in IMG/M
3300030760\|Ga0265762_1082735	Not Available	690	Open in IMG/M
3300030862\|Ga0265753_1008510	All Organisms → cellular organisms → Bacteria	1283	Open in IMG/M
3300031040\|Ga0265754_1023820	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	589	Open in IMG/M
3300031128\|Ga0170823_12406095	Not Available	1173	Open in IMG/M
3300031231\|Ga0170824_101250687	Not Available	2620	Open in IMG/M
3300031708\|Ga0310686_100418181	All Organisms → cellular organisms → Bacteria → Acidobacteria	2890	Open in IMG/M
3300031708\|Ga0310686_103121136	Not Available	2549	Open in IMG/M
3300031708\|Ga0310686_106570711	Not Available	524	Open in IMG/M
3300031708\|Ga0310686_108579609	All Organisms → cellular organisms → Bacteria	1612	Open in IMG/M
3300031708\|Ga0310686_110203287	All Organisms → cellular organisms → Bacteria	2719	Open in IMG/M
3300031708\|Ga0310686_110762706	All Organisms → cellular organisms → Bacteria → Acidobacteria	3364	Open in IMG/M
3300031708\|Ga0310686_118251789	Not Available	1151	Open in IMG/M
3300031866\|Ga0316049_106926	Not Available	774	Open in IMG/M
3300032028\|Ga0316052_109476	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	606	Open in IMG/M
3300032119\|Ga0316051_1002630	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1198	Open in IMG/M
3300032119\|Ga0316051_1011119	Not Available	747	Open in IMG/M
3300032120\|Ga0316053_109629	Not Available	665	Open in IMG/M
3300032515\|Ga0348332_11457179	Not Available	1106	Open in IMG/M
3300032515\|Ga0348332_11869130	Not Available	813	Open in IMG/M
3300032515\|Ga0348332_13332803	Not Available	911	Open in IMG/M
3300032515\|Ga0348332_13749145	Not Available	706	Open in IMG/M
3300032756\|Ga0315742_12477297	Not Available	591	Open in IMG/M
3300034163\|Ga0370515_0003094	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	8254	Open in IMG/M
3300034163\|Ga0370515_0021785	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2942	Open in IMG/M
3300034163\|Ga0370515_0063656	Not Available	1611	Open in IMG/M
3300034163\|Ga0370515_0086275	Not Available	1359	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	98.28%
Host-Associated	Host-Associated	1.72%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	73.28%
Aquatic	Environmental → Aquatic	25.00%
Plants	Host-Associated → Plants	1.72%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	69.83%
Freshwater	Environmental → Aquatic → Freshwater	25.00%
Plant Litter	Environmental → Terrestrial → Plant Litter	3.45%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.72%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	42.24%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	25.00%
Loam	Environmental → Terrestrial → Soil → Loam	22.41%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	5.17%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	3.45%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.72%

Habitat	Taxonomy	Distribution
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	25.00%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	22.41%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	21.55%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	20.69%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	3.45%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	3.45%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	1.72%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.72%

Habitat	Taxonomy	Distribution
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	25.00%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	20.69%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	18.97%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	14.66%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	7.76%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	3.45%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	3.45%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	2.59%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	1.72%
Palsa	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa	0.86%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	0.86%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001082	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O3	Environmental	Open in IMG/M
3300001131	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_O1	Environmental	Open in IMG/M
3300001151	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O3	Environmental	Open in IMG/M
3300001170	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_O2	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300003352	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM1	Environmental	Open in IMG/M
3300003370	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM2	Environmental	Open in IMG/M
3300003505	Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)	Environmental	Open in IMG/M
3300004080	Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300004082	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3	Environmental	Open in IMG/M
3300004091	Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004635	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300005591	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300014489	Permafrost microbial communities from Stordalen Mire, Sweden - 812P2M metaG	Environmental	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300019165	Soil microbial communities from Bohemian Forest, Czech Republic ? CSA1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019185	Soil microbial communities from Bohemian Forest, Czech Republic ? CSE2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019188	Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic ? CZE2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019194	Soil microbial communities from Bohemian Forest, Czech Republic ? CSE1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300022722	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-12-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022731	Soil microbial communities from Bohemian Forest, Czech Republic ? CSU4	Environmental	Open in IMG/M
3300023658	Soil microbial communities from Bohemian Forest, Czech Republic ? CSA3 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300024227	Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic - CZU4	Host-Associated	Open in IMG/M
3300024271	Soil microbial communities from Bohemian Forest, Czech Republic ? CSU5	Environmental	Open in IMG/M
3300026356	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-13-A	Environmental	Open in IMG/M
3300026467	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-16-A	Environmental	Open in IMG/M
3300027034	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_RefH0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027173	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF036 (SPAdes)	Environmental	Open in IMG/M
3300027334	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O2 (SPAdes)	Environmental	Open in IMG/M
3300027432	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_O2 (SPAdes)	Environmental	Open in IMG/M
3300027505	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_O3 (SPAdes)	Environmental	Open in IMG/M
3300027545	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O3 (SPAdes)	Environmental	Open in IMG/M
3300027559	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_O3 (SPAdes)	Environmental	Open in IMG/M
3300027590	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_O1 (SPAdes)	Environmental	Open in IMG/M
3300027674	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M1 (SPAdes)	Environmental	Open in IMG/M
3300027729	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027737	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027767	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027768	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027783	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027795	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027829	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027853	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1 (SPAdes)	Environmental	Open in IMG/M
3300027879	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4 (SPAdes)	Environmental	Open in IMG/M
3300027884	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes)	Environmental	Open in IMG/M
3300028015	Soil microbial communities from Maridalen valley, Oslo, Norway - NSE6	Environmental	Open in IMG/M
3300028037	Soil microbial communities from Maridalen valley, Oslo, Norway - NSE1	Environmental	Open in IMG/M
3300030760	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI4 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030862	Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSE5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031040	Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSE6 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031128	Oak Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031866	Metatranscriptome of soil microbial communities from Bohemian Forest, Czech Republic ? CSU5 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300032028	Metatranscriptome of soil microbial communities from Bohemian Forest, Czech Republic ? CSA5 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300032119	Metatranscriptome of soil microbial communities from Bohemian Forest, Czech Republic ? CSE5 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300032120	Metatranscriptome of spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic - CZA5 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300032515	FICUS49499 Metatranscriptome Czech Republic combined assembly (additional data)	Environmental	Open in IMG/M
3300032756	Forest Soil Metatranscriptomics Site 2 Humus Litter Mineral Combined Assembly	Environmental	Open in IMG/M
3300034163	Peat soil microbial communities from wetlands in Alaska, United States - Goldstream_04D_14	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12664J13189_10041762	3300001082	Forest Soil	MIENNWWALYRAAVLEIDRNKLRGRVIAAEDAIRVRASLGGQVSSEERISIQDAMGALLVLRRELGHSRVDNKFK*
JGI12631J13338_10336081	3300001131	Forest Soil	YRAAVLEIDRNKLRDRVMAAEDAIRARASLGGQVSSEERISIQDAMGALLVLRRELGHSQVDNERHH*
JGI12713J13577_100015812	3300001151	Forest Soil	MTENNWWELYRAAVLEIDRNKLRDRVMAAEDAIRARASLGGQVSSEERISIQDAMGALLVLRRELGHSQVDNERHH*
JGI12704J13340_10003297	3300001170	Forest Soil	VIENNWWGLYRAAVLEIDRNKLRDRVLVAEDAIRARASLGGLVSREERISLQDAMGALLVLRRELGHSRVDNKFK*
JGIcombinedJ26739_10000575810	3300002245	Forest Soil	VIENNWWXLYRAAVLEIDRNKLRDRVLAAEDAIRARASLGGLVSSEERISLQDAMGALLVLRRELGHSRVDNKFK*
JGI26345J50200_10305931	3300003352	Bog Forest Soil	MIENNWRQLYRAAVFEINRSKLLGRVKAAEDAIRARASLGGQVSSDERISIQDAMAALLVMRRELVQSPVAKIKHHQDA*
JGI26337J50220_10067541	3300003370	Bog Forest Soil	MFGNDWWQLYRTAVFEINRNKLLDRVKAAEDAIRARASLGGQVSSDERISIQDAMAALLVMRRDLAQSPVDKIKHRRNV*
JGI26337J50220_10131292	3300003370	Bog Forest Soil	MIENNWWELYRAAFLEIDRHKLRDRVMAAEDAIRVRASLVGQVSSEERIAIQDAMAALLVLRRDLGHSRVDNKRHRDGQESR*
JGIcombinedJ51221_100804014	3300003505	Forest Soil	MIGNNWWQLYRGAVFEINRSKVLDRVKAAEDAIRARVSLGGQVSNDERIWIQDAMAALLVLRRDLAPSSVDKIKQR*
JGIcombinedJ51221_102579472	3300003505	Forest Soil	MIENDWWELYRAAVLEIDRNKLRDRVIAAENAIRARASLGGLVSSEERLSIQDAMGALLVLRRELGHSRVDNKFK*
JGIcombinedJ51221_104639791	3300003505	Forest Soil	MIENNWWELYGAAVLEIDRNKLRDRVEAAEDAIRARASLGGLVSSEERISIQEAMAALLVLRRELGHSQVDNQRPHRDGQESR*
Ga0062385_100500024	3300004080	Bog Forest Soil	MSILLQESDMIENNWWELYRAAVLEIDRSKLRDRVKAAEDAIRARASLGGQVSSEERISIQDAMAALLVLRRELGHSRVDNKHHHSDGQESR*
Ga0062385_104724621	3300004080	Bog Forest Soil	MIENNWWELYRAAVLEIDRNKLRDRVRAAEDAIRARASLTGQVSSEERIAIHDAMGALLVLRRELG
Ga0062385_106511001	3300004080	Bog Forest Soil	MIENNSWELYRAAFLEIDRHKLRDRVMAAEDAIRVRASLVGQVSSEERIAIQDAMAALLVLR
Ga0062384_1000196225	3300004082	Bog Forest Soil	MIENNWWELYRAAVLEIDRNKLRDRVRAAEDAIRARASLTGQVSSEERIAIHDAMGALLVLRRELGHSRVDNKGHGDGVESR*
Ga0062384_1001091782	3300004082	Bog Forest Soil	MLENDWWQLYRAAVFEINRSKRLDRVKAAEDAIRARASLGEQVSNDERTSIQDAMAALLVLRRDLAQSSVDKIKQHRDA*
Ga0062384_1001953553	3300004082	Bog Forest Soil	VPNRDEAAKPAWWELYRAAVLEIDRNKLRDRVKAAEDAIRARASHGGQVSSEERISIQDAMAALLVLRRELGHSLVDIKHHHRDGQESR*
Ga0062384_1003644321	3300004082	Bog Forest Soil	MIETNWWELYRGAVLEIDRNKLRDRVMAAEDAIRARASLGGQVSSEERISIQDAMAALLVLRRELGHSRVDNARHHRDGQESR*
Ga0062387_1000151385	3300004091	Bog Forest Soil	MIEKNWWQLYRAAVFEIDRSKRLDRVKAAEDAIRSRASLVRKVSDEERIELQDAMAILLVMRRELAQSPVDKIQRPRVA*
Ga0062387_1003070821	3300004091	Bog Forest Soil	MIENNWWELYRAAVLEIDRSKLRDRVKAAEDAIRARASLGGQVSSEERISIQDAMAALLVLRRELGHSRVDNKHHHSDGQESR*
Ga0062389_1000682253	3300004092	Bog Forest Soil	MIENNWWELYRSAVLEIDRKKLRDRVVAAEDAIRARASLGGLVSSEERVSIQDAMAALLVLRRELGHSQVDNQRHHKDRQESR*
Ga0062389_1017682192	3300004092	Bog Forest Soil	MIENNWWNLYRAAVLEIDGNKLLNRVGVAEDAIRARASLDGQVSSEERISIQDAMAALLVMRRGLVQSPVDEMKHHRDVWGKK*
Ga0062388_1011821621	3300004635	Bog Forest Soil	IENNWWELYRAAVLEIDRNRLRDRVMAAEGAIRARASLGEQVSSEERISIEDAKGALLILRRELGHSRVDNERHS*
Ga0070761_1000110812	3300005591	Soil	MIENNWWELYRAAVLEIDRNKLRDRVKAAEDAIRARASPDGQISSEERIAIQDAMAALLVLRRELGHSRLDNKHHRDGHESR*
Ga0070761_105035162	3300005591	Soil	MIENNWWQRYRAAVFEVNRNKLLDRVEAAEDAIRVRASLGGEVSNEEQISIQDAMAALLVLRRDSAKSPVDKIRRHRDV*
Ga0070762_106524631	3300005602	Soil	MIGNNWWQLYRGAVFEINRSKVLDRVKAAEDVIRARVSLGGQVSNDERIWIQDAMAALLVLRRDLAPSSVDKIKQR*
Ga0182018_102409712	3300014489	Palsa	MIENNWWELYRAAVLEIDRNKLRGRVIAAEDAIRVRASLGGQVSSEERISIQDAMGALLVLRRELGHSRVDNEFK*
Ga0182024_100330235	3300014501	Permafrost	MAESESRDLYRFAVLETDRHKLPDRIKAAEDAIRIRASLDAQVSSDERMAIKDAMAALLAMRRDSLNATR*
Ga0184589_1184331	3300019165	Soil	MIENNWLTLYRTAVFEINRNKLLDRVKAAEDAIRARASLDGQVSSDERIAIQDAMAALLVMRRELAQSPVDKIKHHRDA
Ga0184587_1123901	3300019185	Soil	MIENNWWELYRAAVLEIDRNKLRDRVKAAEDAIRVRASLVGQVSSEERISIQDAMGALLVLRRELGHSRVDNKGHHRDGQESR
Ga0184599_1160441	3300019188	Soil	MIENNWWELYRAAVLEIDRSKLRDRVKAAEDAIRARASLGGQVSSEERISIQDAMAALLVLRRELGHSRVDNKHHHRDGQESR
Ga0184586_1412342	3300019194	Soil	MIENNWRHLYRAAVLEIDRNKLLNRVKAAEDAIRARASLDGRVSSEERIAIQDAMAALLVLRRELAQSPVDKIKRHGDGQESK
Ga0210407_103880551	3300020579	Soil	MIGNNWWQLYRGAVFEINRSKVLDRVKAAEDAIRARVSLGGQVSNDERIWIQDAMAALLVLRRDLAPSSVDKIKQR
Ga0210403_100220762	3300020580	Soil	MIENDWWELYRAAVLEIDRNKLRDRVIAAENAIRARASLGGLVSSEERLSIQDAMGALLVLRRELGHSRVDNKFK
Ga0210399_110907821	3300020581	Soil	MIENNWWELYRAAVLEIDRNKLRDRVAAAEDAIRARASLGAQVSSEERISIQEAMAALLVLRRELGHSRVDNKGHGDSQESR
Ga0210395_100236237	3300020582	Soil	MIENNWWELYGAAVLEIDRNKLRDRVEAAEDAIRARASLGGLVSSEERISIQEAMAALLVLRRELGHSQVDNQRPHRDGQESR
Ga0210395_101401254	3300020582	Soil	MIQNNWWELYRAAVLEIDRNKLRDRVVAAEDAIRARASLGGLVSSEEQVSIQDAMAALLVLRRELGHSLVDNQRHHKDDQESR
Ga0210401_1000972910	3300020583	Soil	MIENNWWQLYRAAVLEIDRNKLRDRVVAAEDAIRARASLGGQVSSEERISIKDAMGALLVLRRELGHSLVDIKHNHREGQESR
Ga0210401_116275012	3300020583	Soil	VGAIPAAVLEIDRNKLRDRVEAAEDAIRAHVSLGGLVSSEERISIQDATAALLVLRRGLRHSQVD
Ga0210396_106744521	3300021180	Soil	MIENNWWELYRAAVLEIDRNKLRDRVQAAEDAIRARASLGGLVPSEERISIQDAMAALLVLRRGLRHSQVDNQRPHREGQESR
Ga0210396_108286952	3300021180	Soil	MIDNNWWQLYRAAVFEMNRSKVLDRVKAAEDAIRARAALGVQVESDERISIQDAMAALLVLRREFGQTPADKIKHN
Ga0210393_100406532	3300021401	Soil	MIENNWWELYRAAVLEIDRNKLRDRVEAAEDAIRARASLGGLVSREERISIQDAMAALLVLRRGLRHSQIDNQRPHRDGQESR
Ga0210397_110295522	3300021403	Soil	MIENNWWELYRAAVLEIDRNKLRDRVEAAEDAIRARASLGGLVSSEERISIQEAMAALLVLRRELGHSQVDNQRPHRDGQESR
Ga0210389_105433421	3300021404	Soil	MIENNWWELYRAAVLEIDRNKLRDRVEAAEDAIRARASLGGLASREERISIQDAMAALLVLRRGLRHSQVDNQRPHRDGQESR
Ga0210386_100776213	3300021406	Soil	MIENNWWQLYRAAVLEIDRNNLRDRVTTAEDAIRVRASLVGQVSSEERIAIQDAMAALLVLRRELGHSRVDNKRHRDG
Ga0210391_109388401	3300021433	Soil	MIENNWWELYRAAVLEIDRNKLRDRVVAAEEAIRARASLGGLVSSEERISIADAMAALLVLRRELGHSQVDNQRH
Ga0242657_10652951	3300022722	Soil	LYRAAVLEIDRNKLRDRVIAAENAIRARASLGGLVSSEERLSIQDAMGALLVLRRELGHSRVDNKFK
Ga0224563_10120342	3300022731	Soil	MIENNWWQLYRAAVFEINRGKLLDRVKAAEDAIRARASLGGQVSSDERISIQDAMAALLVLRRDLAQSPAAKIKHHRDV
Ga0184591_1041551	3300023658	Soil	MIENNWLTLYRTAVFEINRNKLLDRVKAAEDAIRARASLDGQVSSDERIAIQDAMAALLVMRRELAQSPVDKIKHHR
Ga0228598_10184581	3300024227	Rhizosphere	CRAAVLEIDRNKLRDRVEVAEDAIPARASLDVQVSSEERIAIQDAMAALLVLRRELGHSRVDNKRHRDGQKLR
Ga0228598_11345031	3300024227	Rhizosphere	MIENNWLTLYRNAVLEINRNKLLDRVKAAEDAIRARASLGGQVSSEERISIQDAMAALLVLRRELGHSLVDIKHHHRDGQESR
Ga0224564_10850611	3300024271	Soil	EESDMIENNWWQLYRDAVFEINRGKVLDRVKAAEDAIRARASLDGRVSSEERIAIQDAMAALLVLRRELAQSPVDKIKRHGDGQESK
Ga0257150_10415702	3300026356	Soil	WELYRAAVLEIDRNKLRDRVLAAEDAIRARASLGGLVPSEERISLQDAMGALLVLRRELGHSRVDNKFK
Ga0257154_10000738	3300026467	Soil	MIENNWWELYRAAVLEIDRNKLRDRVMAAEDAIRARASLGGQVSSEERIAIQDAIGALLVVRRELGHSRVDNKRHHRDGQESR
Ga0257154_10017142	3300026467	Soil	MSANNWWELYRAAVLEIDRNKLRDRVMAAADTIRARASFGGQVSSNERISIQDAMGALLVLRPELGHSRVDNKFK
Ga0257154_10151721	3300026467	Soil	MIENNWWELYRAAVLEIDRNKLRDRVLAAEDAIRARASLGGLVPSEERISLQDAMGALLVLRRELGHSRVDNKFK
Ga0257154_10520833	3300026467	Soil	YRAAVLEIDRNKLRDRVVAAEDAIRARASLGGLVSSEERISIQDAMAALLVLRRELGHSQVDNQRHHREGQESR
Ga0257154_10522401	3300026467	Soil	MTENNWWELYRAAVLEIDRNKLRGRVAAAEDAIRSRESLGGQVSSEARISIQDAVGALLVLRRELGHSRVDNERHRRDGQESR
Ga0257154_10582272	3300026467	Soil	MIENNWWELYRAAVLEIDRNKLRARVMAAEDAIRARASLGGQVSSEERISIQDAMGALLVLRRELGHSLVDIRHHHRDGQESR
Ga0209730_10039682	3300027034	Forest Soil	MIENNWWELYRAAVLEIDRNKLRDRVEAAEDAIRARVSLGGLVSSEERISIQDATAALLVLRRGLRHSQVDNQRPHRDGQVSG
Ga0208097_10416201	3300027173	Forest Soil	WWELYRAAVLEIDRNKLRDRVIAAENAIRARASLGGLVSSEERLSIQDAMGALLVLRRELGHSRVDNKFK
Ga0209529_10091592	3300027334	Forest Soil	MTENNWWELYRAAVLEIDRNKLRDRVMAAEDAIRARASLGGQVSSEERISIQDAMGALLVLRRELGHSQVDNERHH
Ga0209421_10533951	3300027432	Forest Soil	MTENNWWELYRAAVLEIDRNKLRDRVLVAEDAIRARASLGGLVSREERISLQDAMGALLVLRRELGHSRVDNKFK
Ga0209218_10041694	3300027505	Forest Soil	VIENNWWDLYRAAVLEIDRNKLRDRVLAAEDAIRARASLGGLVSSEERISLQDAMGALLVLRRELGHSRVDNKFK
Ga0209008_11255081	3300027545	Forest Soil	MIENNWWQLYRAAVLEIDRTILLDRVEAAEDAMQARASLDGRLSSEERISIQDAMAALLVLRRQLAQSPVDKIKRHGAGQESK
Ga0209222_10041073	3300027559	Forest Soil	VIENNWWGLYRAAVLEIDRNKLRDRVLVAEDAIRARASLGGLVSREERISLQDAMGALLVLRRELGHSRVDNKFK
Ga0209116_100002816	3300027590	Forest Soil	MIENNWWALYRAAVLEIDRNKLRGRVIAAEDAIRVRASLGGQVSSEERISIQDAMGALLVLRRELGHSRVDNKFK
Ga0209118_11225272	3300027674	Forest Soil	MTENNWWELYRAAVLEIDRNKLRDRVMAAEDAIRARASLGGQVSSEERISIQDAMGALLVLRRELGHSRVDNKFK
Ga0209248_100958501	3300027729	Bog Forest Soil	MIENNWRQLYRAAVFEINRSKLLGRVKAAEDAIRARASLGGQVSSDERISIQDAMAALLVMRRDLAQSPVDKIKHRRNV
Ga0209038_100015235	3300027737	Bog Forest Soil	MIENNWRQLYRAAVFEINRSKLLGRVKAAEDAIRARASLGGQVSSDERISIQDAMAALLVMRRELVQSPVAKIKHHQDA
Ga0209038_100620203	3300027737	Bog Forest Soil	MIENNWWELYRAAVLEIDRSKLRDRVKAAEDAIRARASLGGQVSSEERISIQDAMAALLVLRRELGHSRVDNKHHHSDGQESR
Ga0209038_101357081	3300027737	Bog Forest Soil	MIENNWWELYRAAFLEIDRHKLRDRVMAAEDAIRVRASLVGQVSSEERIAIQDAMAALLVLRRDLG
Ga0209655_100013025	3300027767	Bog Forest Soil	MFGNDWWQLYRTAVFEINRNKLLDRVKAAEDAIRARASLGGQVSSDERISIQDAMAALLVMRRDLAQSPVDKIKHRRNV
Ga0209655_100019076	3300027767	Bog Forest Soil	MIENNWWELYRAAFLEIDRHKLRDRVMAAEDAIRVRASLVGQVSSEERIAIQDAMAALLVLRRDLGHSRVDNKRHRDGQESR
Ga0209655_1000340110	3300027767	Bog Forest Soil	VINNNWWELYRAAVSEINPSTLLHRIKAAEDAIRARTSLGRQVSSGEQNSMQDAMAVLLVLRRGLAQHPVEKVEHHRVS
Ga0209655_100688971	3300027767	Bog Forest Soil	MFENDWWKLYRAAVLEIDRNKLRDRVMAAEDAIRVRASLVGRVSSEERIAIQDAMAALLVLRRELGHSRVDNKRHRDGQESR
Ga0209655_101262782	3300027767	Bog Forest Soil	MIENNWWELYRAAVLEIDRNKLRDRVRAAEDAIRARASLTGQVSSEERIAIHDAMGALLVLRRELGHSRVDNKGHGDGVESR
Ga0209772_101155101	3300027768	Bog Forest Soil	GCMSILLQESDMIENNWWELYRAAVLEIDRSKLRDRVKAAEDAIRARASLGGQVSSEERISIQDAMAALLVLRRELGHSRVDNKHHHRDGQESR
Ga0209448_100985111	3300027783	Bog Forest Soil	MIEKNWWQLYRAAVFEIDRSKRLDRVKAAEDAIRSRASLVRKVSDEERIELQDAMAILLVMRRELAQSPVDKIQRPRVA
Ga0209448_101873051	3300027783	Bog Forest Soil	MLENDWWQLYRAAVFEINRSKRLDRVKAAEDAIRARASLGEQVSNDERTSIQDAMAALLVLRRDLAQSSVDKIKQHRDA
Ga0209139_100424212	3300027795	Bog Forest Soil	FFALRREAFTDQQGCMSILLQESDMIENNWWELYRAAVLEIDRSKLRDRVKAAEDAIRARASLGGQVSSEERISIQDAMAALLVLRRELGHSRVDNKHHHSDGQESR
Ga0209773_103958901	3300027829	Bog Forest Soil	MIENNWWELYRAAVLEIDRSKLRDRVKAAEDAIRARASLGGQVSSEERISIQDAMAALLVLRRELGHSRV
Ga0209274_100019593	3300027853	Soil	MIENNWWELYRAAVLEIDRNKLRDRVKAAEDAIRARASPDGQISSEERIAIQDAMAALLVLRRELGHSRLDNKHHRDGHESR
Ga0209274_100021158	3300027853	Soil	PIMIGSKWWELYRAAVFEINQSKPLNRLKAAEDAIRARPSLVKQVSSDEHISIYDAKAALLVLRRDLAQSPVHKIEHHQEVGGKK
Ga0209274_101178951	3300027853	Soil	SQEPDMIENNWWELYGAAVLEIDRNKLRDRVEAAEDAIRARASLGGLVSSEERISIQEAMAALLVLRRELGHSQVDNQRPHRDGQESR
Ga0209274_102557722	3300027853	Soil	MIENNWWQRYRAAVFEVNRNKLLDRVEAAEDAIRVRASLGGEVSNEEQISIQDAMAALLVLRRDSAKSPVDKIRRHRDV
Ga0209169_103468442	3300027879	Soil	MIENDWWELYRAAVLEIDRNKLRDRVIAAENAIRARASLGGLVSSEERLSIQDAMAALLVLRRGLRHSQIDNQRPHRDGQESR
Ga0209275_106483991	3300027884	Soil	MIGNNWWQLYRGAVFEINRSKVLDRVKAAEDVIRARVSLGGQVSNDERIWIQDAMAALLVLRRDLAPSSVDKIKQR
Ga0265353_10126211	3300028015	Soil	MIENNWLTLYRAAVLEIDRNKLRDRVTTAENAIRARALLDGQVSSDERTAIEDAMAALLVMRRELGHSRVDNKRHRDL
Ga0265349_10139481	3300028037	Soil	GGAVFEINRSKVLDRVKAAEDVIRARVSLGGQVSNDERIWIQDAMAALLVLRRDLAPSSVDKIKQR
Ga0265762_10827351	3300030760	Soil	VIENNWWDLYRAAVLEIDRNKLRDRVLAAEDAIRARASLGGLVSSEERISLQDAMGALLVLRRELGHS
Ga0265753_10085102	3300030862	Soil	MTENNCWMLYRATVLETDRNKRLDRVKAPEDGIRNRTSLDGPVSSEERISIQDTVAASLVLRKSWRDVLLRR
Ga0265754_10238202	3300031040	Soil	MIENNWLTLYRAAVLEIDRNKLRDRVTTAENAIRARALLDGQVSSDERTAIEDAMAALLVMRRELGHSRVDNKHHHSDGQESR
Ga0170823_124060951	3300031128	Forest Soil	QEFDMVENNWWQLYRAAVFEIDRNNLRDRVTAAEDAIRVRSSLVGQVSSEERIAIQDAMAALLVLRRELGNSRVDNKRHRDG
Ga0170824_1012506871	3300031231	Forest Soil	DMVENNWWQLYRAAVFEIDRNNLRDRVTAAEDAIRVRSSLVGQVSSEERIAIQDAMAALLVLRRELGNSRVDNKRHRDG
Ga0310686_1004181813	3300031708	Soil	MIENHWWQLYRAAIFEIDANKRLDRVRVAEDAIRSRASLGSQVSSEERIEIRDAMCALLALRREFAQHSLDKIKYHGNA
Ga0310686_1031211363	3300031708	Soil	MIENNWWEIYRAAVFEVDRNKLRDRVIAAEDAIRARASLGGQVSSEERISIQDAMGALLVLRRELGHSRVDNKFK
Ga0310686_1065707111	3300031708	Soil	MIENNWWELYRSAVLEIDRKKLRDRVVAAEDAIRVRASLGGLVSSEERVSIQDAMAALLVLRRELGHSQVDNQRHHKDRQESR
Ga0310686_1085796092	3300031708	Soil	MIENNWWKLCRAAVLEIDRNKLRDRVEVAEDAIPARASLDVQVSSEERIAIQDAMAALLVLRRELGHSRVDNKRHRDGQKLR
Ga0310686_1102032871	3300031708	Soil	MIGNNWWQLYRDAVFEINRGKVLDRVKAAEDAIRARASLGGQVSNDERISIQDAMAALLVLRRDLVQNPVANIKQR
Ga0310686_1107627064	3300031708	Soil	MIENNWWELYRAAVLEIDRNKLRDRVVAAEDAIRARASLGGQVCSDERISIQDAMGALLVLRRELGHSRVDNKGHHRDGQESR
Ga0310686_1182517891	3300031708	Soil	MFENDWWKLYRAAFLEIDRNKLRDRVMAAEDAIRVRASLVGQVSSEERIAIQDAMAALLVLRRDLGHSRVDNKRHRDGQESR
Ga0316049_1069261	3300031866	Soil	MIENNWRHLYRAAVLEIDRNKLLDRVKAAEDAIRARASLDGQVSSDERIAIQDAMAALLVMRRELAQSPVDKIKHHRDA
Ga0316052_1094761	3300032028	Soil	MIENNWRHLYRAAVLEIDRNKLRDRVEVAEDAIPARASLDVQVSSEERIAIQDAMAALLVLRRELGHSRVDNTRHHRDGQESR
Ga0316051_10026302	3300032119	Soil	MIENNWRHLYRAAVLEIDRNKLLNRVKAAEDAIRARASLDGRVSSEERIAIQDAMAALLVLRRGLAQSPVDKIKRHGDGQESK
Ga0316051_10111192	3300032119	Soil	MIEKNWWELYRAAVLEIDRNKLRDRVMAAEDAIRARASLGGQVSSEERISIQDAMGALLVLRRELGHSLADIKHHHRDGLESR
Ga0316053_1096292	3300032120	Soil	MIENNWWKLCRAAVLEIDRNKLRDRVEVAEDAIPARASLDVQVSSEERIAIQDAMAALLVLRRELGHSRVDNKRHRDGQELR
Ga0348332_114571793	3300032515	Plant Litter	MIENNWWELYRAAVLEIDRNELRDRVRAAEDAIGARASLAGQVSSEERIAIQGAMSALLVLRRELGHSRVDNKGHGDGQKSR
Ga0348332_118691301	3300032515	Plant Litter	MIENNWWELYRAAVLEIDRNKLRDRVMAAEAAIRARASLGGQVSSEERISIQDAMAALLVLRRELGHSLVDIKHHHRDGQESR
Ga0348332_133328032	3300032515	Plant Litter	MTENNWWELYRAAVLEIDRNKLRNRVIAAEDAIRARASLVGQVSSEERISIQDAMGALLVLRRELGHSRVDNKGHHRDGQESR
Ga0348332_137491451	3300032515	Plant Litter	MIENNWWQLYRDAVFEINRGKVLDRVKAAEDAIRARASLGGQVSNDERISIQDAMAALLVLRRDLVQNPVANIKQR
Ga0315742_124772971	3300032756	Forest Soil	MIENDWWELYRAAVLEIDRNKLRDRVMAAEDAIRARASLGGQVSSEERISIQDAMGALLVLRRELGHSQVDNERHH
Ga0370515_0003094_2181_2408	3300034163	Untreated Peat Soil	MIENNWWGLYRAAVLEIDRNKLRDRVLVAEDAIRARASLRGLVSREERISLQDAMGALLVLRRELGHSRVDNKFK
Ga0370515_0021785_777_1004	3300034163	Untreated Peat Soil	MIENNWWELYRAAVLEIDRNKLRDRVIAAEDAIRARASLGGRVSSEERISIQDAMGALLVLRRELGHSRVDNEFK
Ga0370515_0063656_528_779	3300034163	Untreated Peat Soil	MIENNWWKLNRAAVLEIDRNKFRDRVVAAEDTIRARASLCGLVSSEERISIQDAMAALLVLRRELGHSRVDNQRHHRDGKESR
Ga0370515_0086275_334_612	3300034163	Untreated Peat Soil	MSILLQESDMIENNWWELYRAAVLEIDRSKLRDRVKAAEDAIRARASLGGQVSSEERISIQDAMAALLVLRRELGHSRVDNKHHHRDGQESR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F079296

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences