Metagenome / Metatranscriptome Family F079280

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F079280
Family Type	Metagenome / Metatranscriptome
Number of Sequences	116
Average Sequence Length	45 residues
Representative Sequence	KTKAKGGGLKLCNLGPNLRQALEIARLLPIFETCPTETAAVASF
Number of Associated Samples	97
Number of Associated Scaffolds	116

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.86 %
% of genes near scaffold ends (potentially truncated)	98.28 %
% of genes from short scaffolds (< 2000 bps)	87.07 %
Associated GOLD sequencing projects	92
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.38

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (87.931 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (26.724 % of family members)
Environment Ontology (ENVO)	Unclassified (36.207 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (58.621 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Fibrous	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 34.72% β-sheet: 0.00% Coil/Unstructured: 65.28%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.38
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.38
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 116 Family Scaffolds
PF14279	HNH_5	3.45
PF03544	TonB_C	2.59
PF13751	DDE_Tnp_1_6	1.72
PF08974	DUF1877	1.72
PF05163	DinB	1.72
PF02371	Transposase_20	1.72
PF07045	DUF1330	1.72
PF07885	Ion_trans_2	1.72
PF01226	Form_Nir_trans	1.72
PF05598	DUF772	1.72
PF13432	TPR_16	1.72
PF04337	DUF480	0.86
PF00561	Abhydrolase_1	0.86
PF01850	PIN	0.86
PF01408	GFO_IDH_MocA	0.86
PF05228	CHASE4	0.86
PF02656	DUF202	0.86
PF02321	OEP	0.86
PF00821	PEPCK_GTP	0.86
PF01872	RibD_C	0.86
PF00069	Pkinase	0.86
PF12704	MacB_PCD	0.86
PF02687	FtsX	0.86
PF07883	Cupin_2	0.86
PF13505	OMP_b-brl	0.86
PF05973	Gp49	0.86
PF00198	2-oxoacid_dh	0.86
PF00903	Glyoxalase	0.86
PF04365	BrnT_toxin	0.86
PF02604	PhdYeFM_antitox	0.86
PF13426	PAS_9	0.86
PF03461	TRCF	0.86
PF00491	Arginase	0.86
PF05035	DGOK	0.86
PF02472	ExbD	0.86
PF00155	Aminotran_1_2	0.86
PF04191	PEMT	0.86
PF04542	Sigma70_r2	0.86
PF13646	HEAT_2	0.86
PF01966	HD	0.86
PF08818	DUF1801	0.86
PF07238	PilZ	0.86
PF13518	HTH_28	0.86
PF00117	GATase	0.86

COG ID	Name	Functional Category	% Frequency in 116 Family Scaffolds
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	3.45
COG0810	Periplasmic protein TonB, links inner and outer membranes	Cell wall/membrane/envelope biogenesis [M]	2.59
COG2318	Bacillithiol/mycothiol S-transferase BstA/DinB, DinB/YfiT family (unrelated to E. coli DinB)	Secondary metabolites biosynthesis, transport and catabolism [Q]	1.72
COG5470	Uncharacterized conserved protein, DUF1330 family	Function unknown [S]	1.72
COG3547	Transposase	Mobilome: prophages, transposons [X]	1.72
COG1197	Transcription-repair coupling factor (superfamily II helicase)	Transcription [K]	1.72
COG2116	Formate/nitrite transporter FocA, FNT family	Inorganic ion transport and metabolism [P]	1.72
COG1538	Outer membrane protein TolC	Cell wall/membrane/envelope biogenesis [M]	1.72
COG4430	Uncharacterized conserved protein YdeI, YjbR/CyaY-like superfamily, DUF1801 family	Function unknown [S]	0.86
COG3322	Extracellular (periplasmic) sensor domain CHASE (specificity unknown)	Signal transduction mechanisms [T]	0.86
COG3657	Putative component of the toxin-antitoxin plasmid stabilization module	Defense mechanisms [V]	0.86
COG3734	2-keto-3-deoxy-galactonokinase	Carbohydrate transport and metabolism [G]	0.86
COG4118	Antitoxin component of toxin-antitoxin stability system, DNA-binding transcriptional repressor	Defense mechanisms [V]	0.86
COG2161	Antitoxin component YafN of the YafNO toxin-antitoxin module, PHD/YefM family	Defense mechanisms [V]	0.86
COG4679	Phage-related protein gp49, toxin component of the Tad-Ata toxin-antitoxin system	Defense mechanisms [V]	0.86
COG4941	Predicted RNA polymerase sigma factor, contains C-terminal TPR domain	Transcription [K]	0.86
COG5646	Iron-binding protein Fra/YdhG, frataxin family (Fe-S cluster biosynthesis)	Posttranslational modification, protein turnover, chaperones [O]	0.86
COG5649	Uncharacterized conserved protein, DUF1801 domain	Function unknown [S]	0.86
COG3132	Uncharacterized conserved protein YceH, UPF0502 family	Function unknown [S]	0.86
COG2929	Ribonuclease BrnT, toxin component of the BrnT-BrnA toxin-antitoxin system	Defense mechanisms [V]	0.86
COG0010	Arginase/agmatinase family enzyme	Amino acid transport and metabolism [E]	0.86
COG2149	Uncharacterized membrane protein YidH, DUF202 family	Function unknown [S]	0.86
COG1985	Pyrimidine reductase, riboflavin biosynthesis	Coenzyme transport and metabolism [H]	0.86
COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	Transcription [K]	0.86
COG1274	Phosphoenolpyruvate carboxykinase, GTP-dependent	Energy production and conversion [C]	0.86
COG1191	DNA-directed RNA polymerase specialized sigma subunit	Transcription [K]	0.86
COG0848	Biopolymer transport protein ExbD	Intracellular trafficking, secretion, and vesicular transport [U]	0.86
COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	Transcription [K]	0.86
COG0508	Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component	Energy production and conversion [C]	0.86
COG0262	Dihydrofolate reductase	Coenzyme transport and metabolism [H]	0.86

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	87.93 %
Unclassified	root	N/A	12.07 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	87.93 %
Unclassified	root	N/A	12.07 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	87.93 %
Unclassified	root	N/A	12.07 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	50.86 %
Unclassified	root	N/A	12.07 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → environmental samples	1.72 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.72 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	0.86 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	29.31 %
Unclassified	root	N/A	12.07 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	4.31 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	1.72 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.86 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.86 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	29.31 %
Unclassified	root	N/A	12.07 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	4.31 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	1.72 %
candidate division KSB1	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division KSB1	0.86 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.86 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	29.31 %
Unclassified	root	N/A	12.07 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	4.31 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	1.72 %
unclassified candidate division KSB1	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division KSB1 → unclassified candidate division KSB1	0.86 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.86 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	29.31 %
Unclassified	root	N/A	12.07 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	1.72 %
Granulicella	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella	0.86 %
Acidipila	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidipila	0.86 %
candidate division KSB1 bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division KSB1 → unclassified candidate division KSB1 → candidate division KSB1 bacterium	0.86 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.86 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	29.31 %
Unclassified	root	N/A	12.07 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	1.72 %
unclassified Granulicella	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → unclassified Granulicella	0.86 %
unclassified Acidipila	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidipila → unclassified Acidipila	0.86 %
candidate division KSB1 bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division KSB1 → unclassified candidate division KSB1 → candidate division KSB1 bacterium	0.86 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.86 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	29.31 %
Unclassified	root	N/A	12.07 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	1.72 %
Granulicella sp. L60	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → unclassified Granulicella → Granulicella sp. L60	0.86 %
Acidipila sp.	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidipila → unclassified Acidipila → Acidipila sp.	0.86 %
candidate division KSB1 bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division KSB1 → unclassified candidate division KSB1 → candidate division KSB1 bacterium	0.86 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.86 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300004631\|Ga0058899_10114857	All Organisms → cellular organisms → Bacteria	1743	Open in IMG/M
3300005175\|Ga0066673_10591083	All Organisms → cellular organisms → Bacteria	647	Open in IMG/M
3300005542\|Ga0070732_10576337	All Organisms → cellular organisms → Bacteria	683	Open in IMG/M
3300005555\|Ga0066692_10798282	Not Available	581	Open in IMG/M
3300005556\|Ga0066707_10017640	All Organisms → cellular organisms → Bacteria	3712	Open in IMG/M
3300005575\|Ga0066702_10447954	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	790	Open in IMG/M
3300005576\|Ga0066708_10294485	All Organisms → cellular organisms → Bacteria	1038	Open in IMG/M
3300005598\|Ga0066706_10130942	All Organisms → cellular organisms → Bacteria	1864	Open in IMG/M
3300005602\|Ga0070762_10333217	All Organisms → cellular organisms → Bacteria	964	Open in IMG/M
3300006032\|Ga0066696_10117620	All Organisms → cellular organisms → Bacteria → Proteobacteria	1621	Open in IMG/M
3300006046\|Ga0066652_100687974	All Organisms → cellular organisms → Bacteria	972	Open in IMG/M
3300006163\|Ga0070715_10065275	All Organisms → cellular organisms → Bacteria	1610	Open in IMG/M
3300006791\|Ga0066653_10502951	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	614	Open in IMG/M
3300006914\|Ga0075436_100378471	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division KSB1 → unclassified candidate division KSB1 → candidate division KSB1 bacterium	1023	Open in IMG/M
3300006954\|Ga0079219_10510626	All Organisms → cellular organisms → Bacteria → Acidobacteria	845	Open in IMG/M
3300009089\|Ga0099828_10118436	All Organisms → cellular organisms → Bacteria	2311	Open in IMG/M
3300009089\|Ga0099828_10224924	Not Available	1678	Open in IMG/M
3300010046\|Ga0126384_11702489	All Organisms → cellular organisms → Bacteria	596	Open in IMG/M
3300010301\|Ga0134070_10321345	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	594	Open in IMG/M
3300010320\|Ga0134109_10104599	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	988	Open in IMG/M
3300010321\|Ga0134067_10469050	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	516	Open in IMG/M
3300010358\|Ga0126370_10036702	All Organisms → cellular organisms → Bacteria	3008	Open in IMG/M
3300010359\|Ga0126376_10352514	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1305	Open in IMG/M
3300010361\|Ga0126378_13030624	All Organisms → cellular organisms → Bacteria	535	Open in IMG/M
3300010376\|Ga0126381_104757813	All Organisms → cellular organisms → Bacteria	522	Open in IMG/M
3300010398\|Ga0126383_10089717	All Organisms → cellular organisms → Bacteria → Acidobacteria	2712	Open in IMG/M
3300011269\|Ga0137392_10141545	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1935	Open in IMG/M
3300011269\|Ga0137392_10153144	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1862	Open in IMG/M
3300011270\|Ga0137391_10382542	All Organisms → cellular organisms → Bacteria	1205	Open in IMG/M
3300012096\|Ga0137389_10200187	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1662	Open in IMG/M
3300012096\|Ga0137389_10239021	All Organisms → cellular organisms → Bacteria	1523	Open in IMG/M
3300012096\|Ga0137389_10463883	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1085	Open in IMG/M
3300012096\|Ga0137389_10574101	All Organisms → cellular organisms → Bacteria → Acidobacteria	969	Open in IMG/M
3300012363\|Ga0137390_10432860	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1292	Open in IMG/M
3300012363\|Ga0137390_11232025	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	695	Open in IMG/M
3300012918\|Ga0137396_11006632	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	603	Open in IMG/M
3300012925\|Ga0137419_11296566	All Organisms → cellular organisms → Bacteria	612	Open in IMG/M
3300012929\|Ga0137404_10070575	All Organisms → cellular organisms → Bacteria	2742	Open in IMG/M
3300012930\|Ga0137407_11983290	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → unclassified Granulicella → Granulicella sp. L60	555	Open in IMG/M
3300014150\|Ga0134081_10271491	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	600	Open in IMG/M
3300015264\|Ga0137403_11364078	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	556	Open in IMG/M
3300016319\|Ga0182033_11138984	All Organisms → cellular organisms → Bacteria → Acidobacteria	698	Open in IMG/M
3300016387\|Ga0182040_10918329	All Organisms → cellular organisms → Bacteria → Acidobacteria	727	Open in IMG/M
3300016422\|Ga0182039_10748533	All Organisms → cellular organisms → Bacteria → Acidobacteria	864	Open in IMG/M
3300016445\|Ga0182038_11741143	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	562	Open in IMG/M
3300017823\|Ga0187818_10071456	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1495	Open in IMG/M
3300017924\|Ga0187820_1223030	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	596	Open in IMG/M
3300017955\|Ga0187817_10039771	All Organisms → cellular organisms → Bacteria	2874	Open in IMG/M
3300018085\|Ga0187772_10222944	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1273	Open in IMG/M
3300019278\|Ga0187800_1554547	Not Available	608	Open in IMG/M
3300020579\|Ga0210407_10349606	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1156	Open in IMG/M
3300020579\|Ga0210407_11004198	Not Available	636	Open in IMG/M
3300020580\|Ga0210403_10114018	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2196	Open in IMG/M
3300020581\|Ga0210399_10801578	All Organisms → cellular organisms → Bacteria → Acidobacteria	769	Open in IMG/M
3300021088\|Ga0210404_10644740	Not Available	603	Open in IMG/M
3300021168\|Ga0210406_10166753	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	1842	Open in IMG/M
3300021170\|Ga0210400_10554950	Not Available	947	Open in IMG/M
3300021170\|Ga0210400_10984344	Not Available	686	Open in IMG/M
3300021178\|Ga0210408_10500429	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidipila → unclassified Acidipila → Acidipila sp.	966	Open in IMG/M
3300021180\|Ga0210396_11046732	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	689	Open in IMG/M
3300021401\|Ga0210393_10693427	All Organisms → cellular organisms → Bacteria	830	Open in IMG/M
3300021405\|Ga0210387_10337221	All Organisms → cellular organisms → Bacteria → Acidobacteria	1330	Open in IMG/M
3300021405\|Ga0210387_10381780	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1247	Open in IMG/M
3300021432\|Ga0210384_11500330	Not Available	579	Open in IMG/M
3300021475\|Ga0210392_10243379	Not Available	1271	Open in IMG/M
3300021475\|Ga0210392_10304131	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1143	Open in IMG/M
3300021478\|Ga0210402_10019941	All Organisms → cellular organisms → Bacteria	5747	Open in IMG/M
3300021478\|Ga0210402_10153326	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2100	Open in IMG/M
3300021478\|Ga0210402_10170046	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1993	Open in IMG/M
3300021478\|Ga0210402_10247801	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	1644	Open in IMG/M
3300021479\|Ga0210410_10280776	All Organisms → cellular organisms → Bacteria	1494	Open in IMG/M
3300024330\|Ga0137417_1299684	All Organisms → cellular organisms → Bacteria	1131	Open in IMG/M
3300025916\|Ga0207663_11064006	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	650	Open in IMG/M
3300025922\|Ga0207646_10323299	All Organisms → cellular organisms → Bacteria → Acidobacteria	1394	Open in IMG/M
3300026340\|Ga0257162_1029600	Not Available	672	Open in IMG/M
3300026475\|Ga0257147_1042831	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	667	Open in IMG/M
3300026530\|Ga0209807_1068837	All Organisms → cellular organisms → Bacteria	1590	Open in IMG/M
3300026552\|Ga0209577_10647528	All Organisms → cellular organisms → Bacteria	611	Open in IMG/M
3300026555\|Ga0179593_1038846	All Organisms → cellular organisms → Bacteria	5314	Open in IMG/M
3300026557\|Ga0179587_11089218	All Organisms → cellular organisms → Bacteria	526	Open in IMG/M
3300026862\|Ga0207724_1018553	All Organisms → cellular organisms → Bacteria	608	Open in IMG/M
3300026869\|Ga0207821_1026925	All Organisms → cellular organisms → Bacteria	558	Open in IMG/M
3300027376\|Ga0209004_1077177	Not Available	564	Open in IMG/M
3300027516\|Ga0207761_1104219	All Organisms → cellular organisms → Bacteria	552	Open in IMG/M
3300027748\|Ga0209689_1063636	All Organisms → cellular organisms → Bacteria	2010	Open in IMG/M
3300027812\|Ga0209656_10058068	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2154	Open in IMG/M
3300027842\|Ga0209580_10423224	All Organisms → cellular organisms → Bacteria	664	Open in IMG/M
3300027857\|Ga0209166_10464796	Not Available	652	Open in IMG/M
3300027862\|Ga0209701_10010665	All Organisms → cellular organisms → Bacteria → Acidobacteria	5999	Open in IMG/M
3300027862\|Ga0209701_10050323	All Organisms → cellular organisms → Bacteria → Acidobacteria	2675	Open in IMG/M
3300029636\|Ga0222749_10169752	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1074	Open in IMG/M
3300031543\|Ga0318516_10375187	All Organisms → cellular organisms → Bacteria → Acidobacteria	820	Open in IMG/M
3300031564\|Ga0318573_10819839	All Organisms → cellular organisms → Bacteria → Acidobacteria	500	Open in IMG/M
3300031573\|Ga0310915_10382439	All Organisms → cellular organisms → Bacteria → Acidobacteria	999	Open in IMG/M
3300031715\|Ga0307476_10500370	All Organisms → cellular organisms → Bacteria	900	Open in IMG/M
3300031718\|Ga0307474_10315925	All Organisms → cellular organisms → Bacteria → Acidobacteria	1205	Open in IMG/M
3300031720\|Ga0307469_10196253	All Organisms → cellular organisms → Bacteria	1571	Open in IMG/M
3300031754\|Ga0307475_10483726	Not Available	994	Open in IMG/M
3300031754\|Ga0307475_11021107	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	649	Open in IMG/M
3300031763\|Ga0318537_10348949	All Organisms → cellular organisms → Bacteria	546	Open in IMG/M
3300031820\|Ga0307473_10946506	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	625	Open in IMG/M
3300031823\|Ga0307478_10029804	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3925	Open in IMG/M
3300031823\|Ga0307478_10411086	All Organisms → cellular organisms → Bacteria	1121	Open in IMG/M
3300031879\|Ga0306919_10844760	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	703	Open in IMG/M
3300031880\|Ga0318544_10177123	All Organisms → cellular organisms → Bacteria → Acidobacteria	821	Open in IMG/M
3300031890\|Ga0306925_11005277	All Organisms → cellular organisms → Bacteria	850	Open in IMG/M
3300031890\|Ga0306925_11106288	All Organisms → cellular organisms → Bacteria → Acidobacteria	800	Open in IMG/M
3300031942\|Ga0310916_11390810	All Organisms → cellular organisms → Bacteria → Acidobacteria	575	Open in IMG/M
3300031954\|Ga0306926_12344326	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	590	Open in IMG/M
3300031962\|Ga0307479_10372383	Not Available	1412	Open in IMG/M
3300031962\|Ga0307479_11438779	All Organisms → cellular organisms → Bacteria	647	Open in IMG/M
3300032076\|Ga0306924_12454880	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	524	Open in IMG/M
3300032180\|Ga0307471_100447621	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1430	Open in IMG/M
3300032180\|Ga0307471_101089331	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	965	Open in IMG/M
3300032783\|Ga0335079_10726421	All Organisms → cellular organisms → Bacteria → Acidobacteria	1035	Open in IMG/M
3300033289\|Ga0310914_10608571	All Organisms → cellular organisms → Bacteria → Acidobacteria	985	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.14%
Host-Associated	Host-Associated	0.86%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	95.69%
Aquatic	Environmental → Aquatic	3.45%
Plants	Host-Associated → Plants	0.86%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	95.69%
Freshwater	Environmental → Aquatic → Freshwater	3.45%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.86%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	84.48%
Loam	Environmental → Terrestrial → Soil → Loam	8.62%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	3.45%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	2.59%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.86%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	44.83%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	29.31%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	9.48%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	5.17%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	2.59%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	2.59%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.59%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	0.86%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.86%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.86%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.86%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	26.72%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	18.10%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	10.34%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	9.48%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	7.76%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	5.17%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	3.45%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	2.59%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	2.59%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	2.59%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.59%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	1.72%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.86%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.86%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.86%
Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland	0.86%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.86%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.86%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.86%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.86%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300004631	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF234 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005175	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122	Environmental	Open in IMG/M
3300005542	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1	Environmental	Open in IMG/M
3300005555	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141	Environmental	Open in IMG/M
3300005556	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156	Environmental	Open in IMG/M
3300005575	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151	Environmental	Open in IMG/M
3300005576	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157	Environmental	Open in IMG/M
3300005598	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300006032	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145	Environmental	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006791	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102	Environmental	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010301	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09082015	Environmental	Open in IMG/M
3300010320	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_11112015	Environmental	Open in IMG/M
3300010321	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09212015	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300014150	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300017823	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_3	Environmental	Open in IMG/M
3300017924	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_5	Environmental	Open in IMG/M
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental	Open in IMG/M
3300018085	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300019278	Metatranscriptome of tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_20_MT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021475	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300024330	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026340	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-04-A	Environmental	Open in IMG/M
3300026475	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-12-A	Environmental	Open in IMG/M
3300026530	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154 (SPAdes)	Environmental	Open in IMG/M
3300026552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109 (SPAdes)	Environmental	Open in IMG/M
3300026555	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300026862	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 31 (SPAdes)	Environmental	Open in IMG/M
3300026869	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 53 (SPAdes)	Environmental	Open in IMG/M
3300027376	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_RefH0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027516	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 34 (SPAdes)	Environmental	Open in IMG/M
3300027748	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149 (SPAdes)	Environmental	Open in IMG/M
3300027812	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027842	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027857	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027862	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300029636	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031763	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f29	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031880	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f25	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032783	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0058899_101148572	3300004631	Forest Soil	KAKGGSLKLCHLRPKLREALEMARLLTIFETCPSETAAVASF*
Ga0066673_105910832	3300005175	Soil	LIEMHRKTKAKGGGLKLCHLRPNLKQALEMARLLPIFETCPSETAAVASF*
Ga0070732_105763373	3300005542	Surface Soil	KLCHLRPNLTRALEMARLLPIFETCPTETAAVASF*
Ga0066692_107982821	3300005555	Soil	IEMHRKTKAKGGGLKLCHLRPKLRQALEMARLLPIYETAPSETAAVASF*
Ga0066707_100176405	3300005556	Soil	EMHRKTKAKGGGLKLCHLRPNLKQALEMARLLPIFETCPSETAAVASF*
Ga0066702_104479542	3300005575	Soil	GLKLCHLRPNLKQALEMARLLPIFETCPSETAAVASF*
Ga0066708_102944851	3300005576	Soil	KTKAKGGGLKLCNLGPNLRQALEIARLLPIFETCPTETAAVASF*
Ga0066706_101309422	3300005598	Soil	GGLKLCHLRPNLKQALEMARLLPIFETCPSETAAVASF*
Ga0070762_103332173	3300005602	Soil	MHRKTKAKGGGIKLCNLGPNLRQALEIARLLPIFETCPTEAAAVASF*
Ga0066696_101176203	3300006032	Soil	GLGALIEMHRKTKAKGGGLKLCHLRPNLKQALEMARLLPIFETCPSETAAVASF*
Ga0066652_1006879741	3300006046	Soil	IEMHRKTKAKGGGLKLCHLRPNLKQALEMARLLPIFETCPSETAAVASF*
Ga0070715_100652752	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	GALIEMHRKTKAKGGGLKLCNLGPNLRQALDTARLLPIFETCPTETAAVASF*
Ga0066653_105029511	3300006791	Soil	GGGLKLCHLRPNLKQALEMARLLPIFETCPSETAAVASF*
Ga0075436_1003784712	3300006914	Populus Rhizosphere	ANGARLKLSNLGPKFKQALEVARLLPIFETCPTEAAALADF*
Ga0079219_105106261	3300006954	Agricultural Soil	KTKAKGGRLMLAHLGPKLRQALEIARLLTMFETYASEADAVASAEA*
Ga0099828_101184361	3300009089	Vadose Zone Soil	KGGSLKLCNLRPNLRQALEMARLLPIFETCPSETVAVASF*
Ga0099828_102249241	3300009089	Vadose Zone Soil	LIEMHRKTKAKGGSLKLCHLRPNLRQALEMARLLPIFETCPSETAAVASF*
Ga0126384_117024891	3300010046	Tropical Forest Soil	IEAHRQTKAKGGHLKLSNLGPNFRRALDLARLLPIFDTSSTETAAVSSF*
Ga0134070_103213451	3300010301	Grasslands Soil	KGGGLKLCHLRPNLKQALEMARLLPIFETCPSETAAVASF*
Ga0134109_101045991	3300010320	Grasslands Soil	GALIEAHRKTKAQGGRLKLSNLGPNFKQALELARLLTIFDTCPTEAAAVAGF*
Ga0134067_104690501	3300010321	Grasslands Soil	KAKGGGLKLCHLRPNLKQALEMARLLPIFETCPSETAAVASF*
Ga0126370_100367021	3300010358	Tropical Forest Soil	LIEMHRKTAAKGGRLVLSNLGPNLKRALEIARLLPIFETCPTEAAAVAVF*
Ga0126376_103525141	3300010359	Tropical Forest Soil	EAHRKTKAKGGRLKLSNIGPNFKQALEVARLLTIFETCPTEASAIAGF*
Ga0126378_130306242	3300010361	Tropical Forest Soil	GRLKLSNLGPNFKQALELARLLTIFETCPTEAAAVAGF*
Ga0126381_1047578132	3300010376	Tropical Forest Soil	AKGGRLMLTNLRPNFRQALEMAKLLPIFETSPTEAAAVAAF*
Ga0126383_100897171	3300010398	Tropical Forest Soil	KTKAKGGRLKLSNIGPNFKQALEVARLLTIFETCPTEAAAVAGF*
Ga0137392_101415451	3300011269	Vadose Zone Soil	ALIEMHRKTKAKGGSLKLCNLRPNLRQALEMARLLPIFETSPSESVAVASF*
Ga0137392_101531441	3300011269	Vadose Zone Soil	LIEMHRKTKAKGGSLKLCHLRPNLKQALEMARLLPIFETCPSETAAVASF*
Ga0137391_103825423	3300011270	Vadose Zone Soil	LIEMQRKTKAKGGSLKLCHLRPNLTRALEMARLLPIFETCPTETAAVASF*
Ga0137389_102001871	3300012096	Vadose Zone Soil	TKAKGGSLKLCHLRPNLRQALEMARLLPIFETCPSESVAVASF*
Ga0137389_102390214	3300012096	Vadose Zone Soil	RKTKAKGGSLKLCNLRPNLRQALEMARLLPIFETSPSETAAVASF*
Ga0137389_104638831	3300012096	Vadose Zone Soil	ALIEMHRKTKAKGGSLKLCHLRPNLRQALEMARLLPIFETSPSESVAVASF*
Ga0137389_105741012	3300012096	Vadose Zone Soil	ALIEMHRKTKAKGGSLKLCHLRPNLRQALEMARLLPIFETCPTETAAVASF*
Ga0137390_104328601	3300012363	Vadose Zone Soil	MQRKTKAKGGSLKLCHLRPNLTRALEMARLLPIFETCPTETAAVASF*
Ga0137390_112320251	3300012363	Vadose Zone Soil	RKTKAKGGSLKLCHLRPNLTRALEMARLLPIFETCPTETAAVASF*
Ga0137396_110066321	3300012918	Vadose Zone Soil	ALIEMHRKTKAKGGSLKLCHLRPNLRQALEMARLLPIFETCPSETAAVASF*
Ga0137419_112965661	3300012925	Vadose Zone Soil	MQQKTKAKSGSLKLCNLRPNLRQALEMARLLPIFETCPTETAAVASF*
Ga0137404_100705753	3300012929	Vadose Zone Soil	EIHRKTNAKGGRLVLANLGPKLRQALEMARLLPIFETHATETDAVGSF*
Ga0137407_119832901	3300012930	Vadose Zone Soil	GLKLCNLRPNLRQALEIARLLPIFETCPNETAAVASF*
Ga0134081_102714911	3300014150	Grasslands Soil	HRKTKAQGGRLKLSNLGPNFKQALELARLLTIFDTCPTEAAAVAGF*
Ga0137403_113640782	3300015264	Vadose Zone Soil	QRKTKAKGGRLTLAHLGPKLKQALEMARLLPIFETFATESDAVGSF*
Ga0182033_111389842	3300016319	Soil	LVLSNLGPNLKRALEIARLLPIFETCPTEAAAVAVF
Ga0182040_109183291	3300016387	Soil	MHRKTAAKGGRLVLSNLGPNLKRALEIARLLPIFETCPTEAAAVAVF
Ga0182039_107485331	3300016422	Soil	IEMHRKTAAKGGRLVLSNLGPNLKRALEIARLLPIFETCTTEAAAMAAF
Ga0182038_117411431	3300016445	Soil	KTKAKGGRLMLSNLRPNFKHALEIARLLPIFETCPTEAAAVDSF
Ga0187818_100714561	3300017823	Freshwater Sediment	LIEMHRKTKAKGGGLKLCNLGPNLRQALEIARLLPIFETCPTETAAVASF
Ga0187820_12230301	3300017924	Freshwater Sediment	SHRKTKAKGGRLLLANLGPKLKQALEIARLLPIFETCATEADALASF
Ga0187817_100397715	3300017955	Freshwater Sediment	LIESHRKTKAKGGRLLLTNLGPKLKQALELAGLLPLFETCATEADAVASF
Ga0187772_102229441	3300018085	Tropical Peatland	TTKEKGGRLALCCLGRNFRQALEYAKLLPIFETFPNQDAAVQSFGA
Ga0187800_15545471	3300019278	Peatland	RKTKAKGGRLMLSNLRPNLKHALEMSRLLPIFETSPTEDAAVASF
Ga0210407_103496061	3300020579	Soil	GGGLKLCNLGPNLRQALEIARLLPIFETCPTETVAVASF
Ga0210407_110041981	3300020579	Soil	KTKAKGGVLKLCNLGPNLRQALEIARLLPIFETCPTETAAVASF
Ga0210403_101140181	3300020580	Soil	HRTTKAKGGRLVLAHLGPKLRQALEIARLLTLFETFATEADAVASF
Ga0210399_108015781	3300020581	Soil	ALIEMHRKTKAKGGGLKLCNLGPNLRQALEIARLLPIFETCASETAAVASF
Ga0210404_106447401	3300021088	Soil	IEMQRKTKAKGGGLKLCHLGPNLRQALEMARLLPIFETCPTETAAVASF
Ga0210406_101667531	3300021168	Soil	THRKTKATGGRLALAHLGPKLKQALEIARLLTLFETFATEADAVASF
Ga0210400_105549501	3300021170	Soil	AKGGRLVLAHLGPKLRQALEIARLLTIFETFAIEADAVASF
Ga0210400_109843442	3300021170	Soil	AKGGRLTLCNLGPKFKQALQVVRLMDMFETFPTEAAAVESLGS
Ga0210408_105004292	3300021178	Soil	KGGRLMLTNLGPKLRQALELAGLLTIFETCATEADAVARF
Ga0210396_110467322	3300021180	Soil	IEMHRKTKAKGGNLKLCNLRPNLRQALEIARLLPIFETCPTETAAVASF
Ga0210393_106934271	3300021401	Soil	RLLPTTRGPKLRQALEIARLLTLFETFATEADAVASF
Ga0210387_103372211	3300021405	Soil	KLCNLGPNLRRALEMARLLPIFETCSSETAAVDSF
Ga0210387_103817801	3300021405	Soil	ETQRKTKATGGRLALAHLGPKLKQALEIARLLTLFETFATEAEAVASF
Ga0210384_115003301	3300021432	Soil	GRLMLTNLGPQLRQALEIAGLLTIFETCATEADGVARF
Ga0210392_102433791	3300021475	Soil	RLALAHLGPKLKQALEIARLLTLFETFATEADAVASF
Ga0210392_103041311	3300021475	Soil	TGGRLALAHLGPKLKQALEIARLLTLFETFATEADAVASF
Ga0210402_100199411	3300021478	Soil	LLTNLGPKLRQALEIARLLTLFETFATEAEGVASF
Ga0210402_101533261	3300021478	Soil	LIEMHRKTKAKGGALKLCHLGPNLRQALEMARLLPIFETCPTETAAVASF
Ga0210402_101700461	3300021478	Soil	LIETHRKTKATGGRLALAHLGPKLKQALEIARLLTLFETFATEADAVASF
Ga0210402_102478011	3300021478	Soil	ALIETHRKTKATGGRLALAHLGPKLKQALEIARLLTLFETFATEADAVASF
Ga0210410_102807762	3300021479	Soil	HRKTKAKGGRLVLCSLGPKLRQALEIARLQPMFEISSTEAAAIASF
Ga0137417_12996843	3300024330	Vadose Zone Soil	AKGGSLKLCHLRPNLTRALEMARLLPIFETCPTETAAVASF
Ga0207663_110640061	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	TKANGARLKLSNLGPKFKQALEVARLLPIFETCPTESAAIASF
Ga0207646_103232992	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	LIEMHRKTKAKGGGLKLCNLGPNLRRALEIARLLPIFETCPTETAAVASF
Ga0257162_10296001	3300026340	Soil	TTKAKGGRLTLCNLGPKFKQALQVVRLIDMFETFPTEAAAVESLGL
Ga0257147_10428311	3300026475	Soil	KIKAKGGRLMLANLGPKLRQALEIARLLPIFETYVTEAEAVASF
Ga0209807_10688372	3300026530	Soil	EMHRKTKAKGGGLKLCHLRPNLKQALEMARLLPIFETCPSETAAVASF
Ga0209577_106475281	3300026552	Soil	RKTKAKGGGLKLCHLGPKLRQALEMARLLPIFETCPSETAAVASF
Ga0179593_10388466	3300026555	Vadose Zone Soil	MQQKTKAKSGSLKLCNLRPNLRQALEMARLLPIFETCPTETAAVASF
Ga0179587_110892181	3300026557	Vadose Zone Soil	QRKTKAKGGRLTLAHLGPKLKQALEMARLLPIFETFATETDAVGSF
Ga0207724_10185531	3300026862	Tropical Forest Soil	LIETHRKTKAKGGRFLLCHMGPKLTKALELARLMPIFETSPNEAAAVASL
Ga0207821_10269251	3300026869	Tropical Forest Soil	QERALIETHRKTKAKGGRFLLCHMGPKLTKALELARLMPIFETSPNEAAAVASL
Ga0209004_10771772	3300027376	Forest Soil	RKAKAKGGHMKLTNLGPKLKQALEISRLLPLFETCATEAAAIASF
Ga0207761_11042192	3300027516	Tropical Forest Soil	GKLKLCNLRPNLKQALEIARLLPIFDTCPTESDAMSSF
Ga0209689_10636361	3300027748	Soil	TKAKGGGLKLCHLRPNLKQALEMARLLPIFETCPSETAAVASF
Ga0209656_100580683	3300027812	Bog Forest Soil	LGALIEMHRKTKAKEGGGLKLCNLGPNLRQALEIARLLPIFETCPTETAAVASF
Ga0209580_104232242	3300027842	Surface Soil	MSAGLGALIEMQRKTKAKGGSLKHCHLRPNLLRALEMARLLPIFETCPTETAAVASF
Ga0209166_104647961	3300027857	Surface Soil	GRLMLANLGPKLRQALEMARLLPIFETYATETEAVASF
Ga0209701_100106651	3300027862	Vadose Zone Soil	AKGGGLKLCNLGPNLRQALEIARLLPIFETCPTETAAVASF
Ga0209701_100503231	3300027862	Vadose Zone Soil	AKGGGLKLCNLGPNLRQALEIARLLPIFETCPTETAAIASF
Ga0222749_101697522	3300029636	Soil	GGLKLCNLGPNLRQALEIARLMPIFDTSPTETAAVASF
Ga0318516_103751871	3300031543	Soil	GGRLVLSNLGPNLKRALEIARLLPIFETCPTEAAAVAVF
Ga0318573_108198392	3300031564	Soil	HRKTAAKGGRLVLSNLGPNLKRALEIARLLPIFETCPTEAAAVAVF
Ga0310915_103824393	3300031573	Soil	MHRKTAAKGGRLVLSNLGPNLKRALEIARLLPIFETCTTEAAAMAAF
Ga0307476_105003701	3300031715	Hardwood Forest Soil	LGALIELHRKTKAKGGGFKLCNLGPNLRQALEIARLLPIFETCPTETAALASF
Ga0307474_103159251	3300031718	Hardwood Forest Soil	KAKGGGIKLCNLGPNLKRALEMARLMPIFETCSSETAAVASF
Ga0307469_101962533	3300031720	Hardwood Forest Soil	KAKSGRLILTHLGPKLRQALELAGLLTIFETHATEADALARF
Ga0307475_104837262	3300031754	Hardwood Forest Soil	MQRKTKAKGGGLKLCNLGPNLRQALEMARLLPIFETCATETAAVASF
Ga0307475_110211071	3300031754	Hardwood Forest Soil	LGALIEMHRKTKAKGGGLKLCNLGPNLRQALDTARLLPIFETCPTETAAVARS
Ga0318537_103489492	3300031763	Soil	IEAHRKTKAQGGRLKLSNIGPNFKQALEVARLLTIFETCPTEAAAVAGF
Ga0307473_109465062	3300031820	Hardwood Forest Soil	LGALIEMHRKTKAKGGGLKLCHLRPNLRQALEMARLLPIFETCPSETAAVASF
Ga0307478_100298041	3300031823	Hardwood Forest Soil	GALIEMQRKTKAKGGSLKLCHLRPNLTRALEMARLLPIFETCATETAAVASF
Ga0307478_104110862	3300031823	Hardwood Forest Soil	EMHRKTKAQGAGLKLCNLGPNLRNALEIARLLPIFETFPTETVAIASF
Ga0306919_108447601	3300031879	Soil	GLGALIEAHRITKAKRGRLKLCDLGPQFRQALELARLLPIFETFPTEAAAVESPWS
Ga0318544_101771231	3300031880	Soil	IEMHRKTAAKGGRLVLSNLGPNLKRALEIARLLPIFETCPTEAAAVAVF
Ga0306925_110052771	3300031890	Soil	LLCHLGPKLKQALELARLLPLFETSPTEEAAMASF
Ga0306925_111062881	3300031890	Soil	LGALIEMHRKTAAKGGRLVLSNLGPNLKRALEIARLLPIFETCTTEAAAMAAF
Ga0310916_113908101	3300031942	Soil	LVLSNLGPNLKRALEIAQLLPIFETCPTEAAAVAVF
Ga0306926_123443261	3300031954	Soil	KLCDLGPQFRQALELARLLPIFETFPTEAAAVESPWS
Ga0307479_103723831	3300031962	Hardwood Forest Soil	GTLIEMQRKTKAKSGSLKLCHLRPNLKQALEMARLLPLFETCPSETAAVASF
Ga0307479_114387792	3300031962	Hardwood Forest Soil	TKAKGGGLKLCNLGPNLRQALEIARLLPIFETCPTETVAVASF
Ga0306924_124548801	3300032076	Soil	GALIEAHRTTKANGGRLALCSLGPNFRQALEFARLLPIFEIFPNEAAAVRSFES
Ga0307471_1004476212	3300032180	Hardwood Forest Soil	GGRLMLTNLGPKLRQALEIARLLTIFETFATEADAVASL
Ga0307471_1010893312	3300032180	Hardwood Forest Soil	EMQRKTKAKGGSLKLCHLRPNLTRALEMARLLPIFDTCPTETAAVASF
Ga0335079_107264211	3300032783	Soil	GGRLMLTNLRPNLRKALELSRLLPIFETSPTEDAAVASF
Ga0310914_106085711	3300033289	Soil	GALIEMHRKTAAKGGRLVLSNLGPNLKRALEIARLLPIFETCPTEAAAVAVF

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F079280

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences