Metagenome / Metatranscriptome Family F079255

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F079255
Family Type	Metagenome / Metatranscriptome
Number of Sequences	116
Average Sequence Length	48 residues
Representative Sequence	PARYMRWSLPSLRRFMDKRPDLRVTLQGLVNRDLAGKLERLLS
Number of Associated Samples	101
Number of Associated Scaffolds	116

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.88 %
% of genes near scaffold ends (potentially truncated)	93.97 %
% of genes from short scaffolds (< 2000 bps)	91.38 %
Associated GOLD sequencing projects	97
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.42

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (62.931 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere (13.793 % of family members)
Environment Ontology (ENVO)	Unclassified (24.138 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (37.931 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 46.48% β-sheet: 0.00% Coil/Unstructured: 53.52%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.42
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.42
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 116 Family Scaffolds
PF00206	Lyase_1	23.28
PF00881	Nitroreductase	5.17
PF01663	Phosphodiest	3.45
PF01872	RibD_C	2.59
PF02518	HATPase_c	2.59
PF02515	CoA_transf_3	2.59
PF07690	MFS_1	1.72
PF03200	Glyco_hydro_63	1.72
PF12833	HTH_18	1.72
PF01547	SBP_bac_1	1.72
PF04831	Popeye	1.72
PF00496	SBP_bac_5	1.72
PF07885	Ion_trans_2	0.86
PF02653	BPD_transp_2	0.86
PF01699	Na_Ca_ex	0.86
PF13229	Beta_helix	0.86
PF00296	Bac_luciferase	0.86
PF03916	NrfD	0.86
PF01590	GAF	0.86
PF01042	Ribonuc_L-PSP	0.86
PF10415	FumaraseC_C	0.86
PF00196	GerE	0.86
PF02604	PhdYeFM_antitox	0.86
PF00072	Response_reg	0.86

COG ID	Name	Functional Category	% Frequency in 116 Family Scaffolds
COG0262	Dihydrofolate reductase	Coenzyme transport and metabolism [H]	2.59
COG1804	Crotonobetainyl-CoA:carnitine CoA-transferase CaiB and related acyl-CoA transferases	Lipid transport and metabolism [I]	2.59
COG1985	Pyrimidine reductase, riboflavin biosynthesis	Coenzyme transport and metabolism [H]	2.59
COG0251	Enamine deaminase RidA/Endoribonuclease Rid7C, YjgF/YER057c/UK114 family	Defense mechanisms [V]	0.86
COG0387	Cation (Ca2+/Na+/K+)/H+ antiporter ChaA	Inorganic ion transport and metabolism [P]	0.86
COG0530	Ca2+/Na+ antiporter	Inorganic ion transport and metabolism [P]	0.86
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	0.86
COG2161	Antitoxin component YafN of the YafNO toxin-antitoxin module, PHD/YefM family	Defense mechanisms [V]	0.86
COG4118	Antitoxin component of toxin-antitoxin stability system, DNA-binding transcriptional repressor	Defense mechanisms [V]	0.86

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	64.66 %
Unclassified	root	N/A	35.34 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	64.66 %
Unclassified	root	N/A	35.34 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	62.93 %
Unclassified	root	N/A	35.34 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	1.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.34 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	17.24 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	17.24 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	5.17 %
Sar	clade	All Organisms → cellular organisms → Eukaryota → Sar	1.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.34 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	17.24 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	4.31 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	3.45 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2.59 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1.72 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1.72 %
Alveolata	clade	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata	1.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.34 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	13.79 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	4.31 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	3.45 %
Dinophyceae	class	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	1.72 %
Betaproteobacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Betaproteobacteria incertae sedis	1.72 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	0.86 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.86 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.34 %
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	13.79 %
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	4.31 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	3.45 %
Candidatus Accumulibacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Betaproteobacteria incertae sedis → Candidatus Accumulibacter	1.72 %
Suessiales	order	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales	1.72 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	0.86 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	0.86 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.34 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	13.79 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	4.31 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	3.45 %
unclassified Candidatus Accumulibacter	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Betaproteobacteria incertae sedis → Candidatus Accumulibacter → unclassified Candidatus Accumulibacter	1.72 %
Symbiodiniaceae	family	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae	1.72 %
Solirubrobacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae	0.86 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.86 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.34 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	13.79 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	4.31 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	3.45 %
Candidatus Accumulibacter sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Betaproteobacteria incertae sedis → Candidatus Accumulibacter → unclassified Candidatus Accumulibacter → Candidatus Accumulibacter sp.	1.72 %
Symbiodinium	genus	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium	1.72 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → environmental samples	0.86 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.86 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.34 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	13.79 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	4.31 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	3.45 %
Candidatus Accumulibacter sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Betaproteobacteria incertae sedis → Candidatus Accumulibacter → unclassified Candidatus Accumulibacter → Candidatus Accumulibacter sp.	1.72 %
Symbiodinium	genus	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium	1.72 %
uncultured Solirubrobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → environmental samples → uncultured Solirubrobacteraceae bacterium	0.86 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.86 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.86 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000955\|JGI1027J12803_105995840	All Organisms → cellular organisms → Bacteria	1145	Open in IMG/M
3300000956\|JGI10216J12902_119420442	Not Available	698	Open in IMG/M
3300003993\|Ga0055468_10311126	All Organisms → cellular organisms → Bacteria	504	Open in IMG/M
3300005093\|Ga0062594_102887865	Not Available	535	Open in IMG/M
3300005294\|Ga0065705_11054190	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	513	Open in IMG/M
3300005338\|Ga0068868_100559868	All Organisms → cellular organisms → Bacteria	1008	Open in IMG/M
3300005345\|Ga0070692_10857170	All Organisms → cellular organisms → Bacteria	625	Open in IMG/M
3300005518\|Ga0070699_101007041	All Organisms → cellular organisms → Bacteria	764	Open in IMG/M
3300005553\|Ga0066695_10022508	All Organisms → cellular organisms → Bacteria → Proteobacteria	3544	Open in IMG/M
3300005553\|Ga0066695_10079046	All Organisms → cellular organisms → Bacteria	1996	Open in IMG/M
3300005764\|Ga0066903_104173282	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	773	Open in IMG/M
3300005764\|Ga0066903_105596735	All Organisms → cellular organisms → Bacteria	661	Open in IMG/M
3300005764\|Ga0066903_106514943	All Organisms → cellular organisms → Bacteria	608	Open in IMG/M
3300006034\|Ga0066656_10971532	All Organisms → cellular organisms → Bacteria → Proteobacteria	545	Open in IMG/M
3300006163\|Ga0070715_10591786	Not Available	649	Open in IMG/M
3300006804\|Ga0079221_10533005	All Organisms → cellular organisms → Bacteria	772	Open in IMG/M
3300006845\|Ga0075421_100984459	All Organisms → cellular organisms → Bacteria	956	Open in IMG/M
3300006846\|Ga0075430_100554524	All Organisms → cellular organisms → Bacteria	948	Open in IMG/M
3300006847\|Ga0075431_100176118	All Organisms → cellular organisms → Bacteria	2197	Open in IMG/M
3300006852\|Ga0075433_10577825	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	987	Open in IMG/M
3300006852\|Ga0075433_10785537	All Organisms → cellular organisms → Bacteria	832	Open in IMG/M
3300006871\|Ga0075434_101588383	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	663	Open in IMG/M
3300006903\|Ga0075426_10060697	All Organisms → cellular organisms → Bacteria	2701	Open in IMG/M
3300006904\|Ga0075424_100323922	All Organisms → cellular organisms → Bacteria	1641	Open in IMG/M
3300007076\|Ga0075435_100174328	All Organisms → cellular organisms → Bacteria	1815	Open in IMG/M
3300009012\|Ga0066710_102356306	Not Available	773	Open in IMG/M
3300009094\|Ga0111539_12789184	All Organisms → cellular organisms → Bacteria → Proteobacteria	566	Open in IMG/M
3300009100\|Ga0075418_10898921	Not Available	957	Open in IMG/M
3300009147\|Ga0114129_12262653	Not Available	653	Open in IMG/M
3300009157\|Ga0105092_10113877	Not Available	1490	Open in IMG/M
3300009162\|Ga0075423_12009447	Not Available	626	Open in IMG/M
3300009162\|Ga0075423_12708603	All Organisms → cellular organisms → Bacteria → Proteobacteria	543	Open in IMG/M
3300009609\|Ga0105347_1092347	All Organisms → cellular organisms → Bacteria → Proteobacteria	1133	Open in IMG/M
3300009789\|Ga0126307_11472029	Not Available	552	Open in IMG/M
3300010043\|Ga0126380_10295878	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	1149	Open in IMG/M
3300010043\|Ga0126380_11180061	Not Available	658	Open in IMG/M
3300010046\|Ga0126384_11572246	Not Available	618	Open in IMG/M
3300010047\|Ga0126382_11934473	Not Available	559	Open in IMG/M
3300010166\|Ga0126306_11176171	All Organisms → cellular organisms → Bacteria	630	Open in IMG/M
3300010359\|Ga0126376_10210180	All Organisms → cellular organisms → Bacteria	1621	Open in IMG/M
3300010359\|Ga0126376_13230526	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	504	Open in IMG/M
3300010360\|Ga0126372_12195863	Not Available	601	Open in IMG/M
3300010362\|Ga0126377_11743694	All Organisms → cellular organisms → Bacteria	698	Open in IMG/M
3300011107\|Ga0151490_1073407	Not Available	509	Open in IMG/M
3300011445\|Ga0137427_10277102	Not Available	703	Open in IMG/M
3300012198\|Ga0137364_10452141	Not Available	964	Open in IMG/M
3300012206\|Ga0137380_10446804	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Betaproteobacteria incertae sedis → Candidatus Accumulibacter → unclassified Candidatus Accumulibacter → Candidatus Accumulibacter sp.	1144	Open in IMG/M
3300012208\|Ga0137376_10116369	All Organisms → cellular organisms → Bacteria	2278	Open in IMG/M
3300012209\|Ga0137379_10588456	Not Available	1020	Open in IMG/M
3300012285\|Ga0137370_10698983	Not Available	630	Open in IMG/M
3300012354\|Ga0137366_10869093	Not Available	637	Open in IMG/M
3300012501\|Ga0157351_1052036	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	542	Open in IMG/M
3300012922\|Ga0137394_10858814	All Organisms → cellular organisms → Bacteria → Proteobacteria	759	Open in IMG/M
3300012923\|Ga0137359_10442925	Not Available	1150	Open in IMG/M
3300012929\|Ga0137404_10951323	Not Available	785	Open in IMG/M
3300012971\|Ga0126369_10610038	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → environmental samples → uncultured Solirubrobacteraceae bacterium	1162	Open in IMG/M
3300012985\|Ga0164308_11911931	Not Available	553	Open in IMG/M
3300015052\|Ga0137411_1317788	All Organisms → cellular organisms → Bacteria	5294	Open in IMG/M
3300015371\|Ga0132258_11549989	All Organisms → cellular organisms → Bacteria	1673	Open in IMG/M
3300015371\|Ga0132258_13738024	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1038	Open in IMG/M
3300015374\|Ga0132255_105162389	Not Available	553	Open in IMG/M
3300016270\|Ga0182036_10099339	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	1975	Open in IMG/M
3300016357\|Ga0182032_11466419	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	592	Open in IMG/M
3300016387\|Ga0182040_11860151	Not Available	516	Open in IMG/M
3300016422\|Ga0182039_12249443	Not Available	503	Open in IMG/M
3300018060\|Ga0187765_11334406	Not Available	509	Open in IMG/M
3300025908\|Ga0207643_10930451	All Organisms → cellular organisms → Bacteria → Proteobacteria	563	Open in IMG/M
3300025931\|Ga0207644_11761844	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	518	Open in IMG/M
3300025935\|Ga0207709_10819703	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	752	Open in IMG/M
3300025935\|Ga0207709_11661293	Not Available	531	Open in IMG/M
3300025961\|Ga0207712_11347518	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	638	Open in IMG/M
3300026089\|Ga0207648_10890448	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	831	Open in IMG/M
3300026089\|Ga0207648_11322180	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	677	Open in IMG/M
3300026324\|Ga0209470_1014190	All Organisms → cellular organisms → Bacteria	4574	Open in IMG/M
3300026342\|Ga0209057_1100341	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium	1165	Open in IMG/M
3300026343\|Ga0209159_1268360	Not Available	519	Open in IMG/M
3300026537\|Ga0209157_1090542	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium	1477	Open in IMG/M
3300027907\|Ga0207428_10610969	Not Available	785	Open in IMG/M
3300027909\|Ga0209382_12222737	All Organisms → cellular organisms → Bacteria → Proteobacteria	518	Open in IMG/M
3300028592\|Ga0247822_11939139	Not Available	505	Open in IMG/M
3300028597\|Ga0247820_10714624	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	699	Open in IMG/M
3300028809\|Ga0247824_10742434	All Organisms → cellular organisms → Bacteria	602	Open in IMG/M
3300031226\|Ga0307497_10135731	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1005	Open in IMG/M
3300031538\|Ga0310888_10171169	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1174	Open in IMG/M
3300031547\|Ga0310887_10261540	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	970	Open in IMG/M
3300031679\|Ga0318561_10534988	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	645	Open in IMG/M
3300031740\|Ga0307468_100446980	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1005	Open in IMG/M
3300031740\|Ga0307468_100954187	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	749	Open in IMG/M
3300031740\|Ga0307468_101191856	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	686	Open in IMG/M
3300031744\|Ga0306918_10108471	All Organisms → cellular organisms → Bacteria	1990	Open in IMG/M
3300031747\|Ga0318502_10361272	Not Available	860	Open in IMG/M
3300031754\|Ga0307475_11248065	Not Available	577	Open in IMG/M
3300031765\|Ga0318554_10383272	All Organisms → cellular organisms → Bacteria	798	Open in IMG/M
3300031765\|Ga0318554_10843949	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	512	Open in IMG/M
3300031769\|Ga0318526_10036444	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	1823	Open in IMG/M
3300031771\|Ga0318546_10490066	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	862	Open in IMG/M
3300031778\|Ga0318498_10054457	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	1780	Open in IMG/M
3300031792\|Ga0318529_10545898	Not Available	538	Open in IMG/M
3300031793\|Ga0318548_10564024	Not Available	555	Open in IMG/M
3300031797\|Ga0318550_10537172	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	563	Open in IMG/M
3300031858\|Ga0310892_10315382	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	991	Open in IMG/M
3300031880\|Ga0318544_10195464	Not Available	780	Open in IMG/M
3300031892\|Ga0310893_10157171	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	888	Open in IMG/M
3300031893\|Ga0318536_10403088	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	691	Open in IMG/M
3300031911\|Ga0307412_10650501	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Betaproteobacteria incertae sedis → Candidatus Accumulibacter → unclassified Candidatus Accumulibacter → Candidatus Accumulibacter sp.	899	Open in IMG/M
3300031941\|Ga0310912_10085733	Not Available	2295	Open in IMG/M
3300031946\|Ga0310910_10714910	All Organisms → cellular organisms → Bacteria	791	Open in IMG/M
3300032009\|Ga0318563_10337209	Not Available	816	Open in IMG/M
3300032066\|Ga0318514_10599166	Not Available	587	Open in IMG/M
3300032075\|Ga0310890_11039908	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	660	Open in IMG/M
3300032075\|Ga0310890_11234274	All Organisms → cellular organisms → Bacteria → Proteobacteria	610	Open in IMG/M
3300032180\|Ga0307471_101533752	Not Available	824	Open in IMG/M
3300032180\|Ga0307471_101637193	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	799	Open in IMG/M
3300032205\|Ga0307472_100029502	All Organisms → cellular organisms → Bacteria → Proteobacteria	3156	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	74.14%
Host-Associated	Host-Associated	25.86%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	70.69%
Plants	Host-Associated → Plants	25.86%
Aquatic	Environmental → Aquatic	3.45%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	70.69%
Rhizosphere	Host-Associated → Plants → Rhizosphere	18.10%
Rhizoplane	Host-Associated → Plants → Rhizoplane	7.76%
Sediment	Environmental → Aquatic → Sediment	1.72%
Freshwater	Environmental → Aquatic → Freshwater	0.86%
Marine	Environmental → Aquatic → Marine	0.86%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	64.66%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	17.24%
Loam	Environmental → Terrestrial → Soil → Loam	5.17%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	5.17%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.59%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.72%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.86%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.86%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.86%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.86%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	24.14%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	22.41%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	17.24%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	8.62%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	7.76%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	5.17%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	2.59%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.59%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.59%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.72%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.72%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.86%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	0.86%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.86%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.86%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	13.79%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	13.79%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	8.62%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	7.76%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	7.76%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	7.76%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	6.03%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	5.17%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	4.31%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	2.59%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.59%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	2.59%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	1.72%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.72%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	1.72%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.72%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	0.86%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	0.86%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.86%
Unplanted Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Unplanted Soil	0.86%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.86%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.86%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.86%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.86%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.86%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.86%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.86%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.86%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300003993	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailC_D2	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005345	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005553	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006034	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105	Environmental	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006846	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009157	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm March2015	Environmental	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009609	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT890	Environmental	Open in IMG/M
3300009789	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010166	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot27	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300011107	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHAC (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300011445	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT700_2	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012285	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaG	Environmental	Open in IMG/M
3300012354	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG	Environmental	Open in IMG/M
3300012501	Unplanted soil (control) microbial communities from North Carolina - M.Soil.4.yng.170610	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300015052	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300018060	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_10_MG	Environmental	Open in IMG/M
3300025908	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025935	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025938	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025942	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025961	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026089	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026324	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125 (SPAdes)	Environmental	Open in IMG/M
3300026342	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146 (SPAdes)	Environmental	Open in IMG/M
3300026343	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144 (SPAdes)	Environmental	Open in IMG/M
3300026537	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135 (SPAdes)	Environmental	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028592	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Cellulose_Day30	Environmental	Open in IMG/M
3300028597	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glucose_Day14	Environmental	Open in IMG/M
3300028809	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_PalmiticAcid_Day48	Environmental	Open in IMG/M
3300031226	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_S	Environmental	Open in IMG/M
3300031538	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D1	Environmental	Open in IMG/M
3300031547	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D4	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031765	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22	Environmental	Open in IMG/M
3300031769	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f24	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031778	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f24	Environmental	Open in IMG/M
3300031792	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f23	Environmental	Open in IMG/M
3300031793	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f21	Environmental	Open in IMG/M
3300031797	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f23	Environmental	Open in IMG/M
3300031858	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D2	Environmental	Open in IMG/M
3300031880	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f25	Environmental	Open in IMG/M
3300031892	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D2	Environmental	Open in IMG/M
3300031893	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f28	Environmental	Open in IMG/M
3300031911	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1	Host-Associated	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300032009	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f19	Environmental	Open in IMG/M
3300032066	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18	Environmental	Open in IMG/M
3300032075	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI1027J12803_1059958403	3300000955	Soil	PVEVTFTEPTRYMRWSLPSLRRFIDKRPDLRVALQALVNRDLAGKLEKLL
JGI10216J12902_1194204421	3300000956	Soil	TEPARYMRWSLPSLRRFMDTRPDLRVTLQGLVSRDLAEKLNLVVKET*
Ga0055468_103111262	3300003993	Natural And Restored Wetlands	VEVTFTEPARYMRWSLPSLRSFMDKRPELRITLQGLVNRDLAGKLEQLVVREHNGGRGSA
Ga0062594_1028878651	3300005093	Soil	RYMSWPLSSLRAFVDKRPEMRVTLQGMVSRDLAGKLERLLS*
Ga0065705_110541902	3300005294	Switchgrass Rhizosphere	PSPVEMTFAEPARYMRWSLPSLRKFIDSRPDLRVILQGLVNRDLAQKLETVLS*
Ga0068868_1005598682	3300005338	Miscanthus Rhizosphere	FTEPARYMRWSLPSLRKFMDTRPDLRVTLQGLVNRDLAEKLNLVMKET*
Ga0070692_108571701	3300005345	Corn, Switchgrass And Miscanthus Rhizosphere	FTEPARYMRWSLPSLRRFMDSRPDLRVALQGLVNRDLAEKLNLVMKET*
Ga0070699_1010070413	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	TGEPSPVEVTFTEPARYMRWSLPSLRRFMDKRPDLRVTLQGLVNRDLAGKLERLLS*
Ga0066695_100225084	3300005553	Soil	GEPSPVEVTFAEPARYMRWSLPSLRSFMDKRPDLRVTLQGLVNRDLAGKLERLMS*
Ga0066695_100790461	3300005553	Soil	LTGDPSPVDATFTGTARYMSWPLQSIRTFLDRRPDLRVTLQGLVNRELAGKLERVSSMLAGDTRA*
Ga0066903_1041732821	3300005764	Tropical Forest Soil	ARYMCWPLASLRRFIDKRPDLRVALQQLVNRDLVSKLGTLVPP*
Ga0066903_1055967351	3300005764	Tropical Forest Soil	WPLHNIRSFLDRRPELRVNLQGLVNRDLAGKLEGLVSA*
Ga0066903_1065149431	3300005764	Tropical Forest Soil	IEPARYMRWSLPDLRSFMDKRPDLRVTLQQHVNRDLAGKLEKLLTAR*
Ga0066656_109715321	3300006034	Soil	SLPSLRRFMDKRPDLRVTLQSLVNRDLAGKLERLLS*
Ga0070715_105917862	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	SPVEVTFTEPARYMRWSLPSLRSFMDKRPDLRVTLQRLVNRDLAGKLERLLS*
Ga0079221_105330052	3300006804	Agricultural Soil	TPSPVEIVFTEPARYMRWSLANLRSFMDKRPDLRVTLQGLVNRALAGKLEKLLSAS*
Ga0075421_1009844592	3300006845	Populus Rhizosphere	TRYMRWSLPSLRRFMDKRPDLRVTLQSLVNRDLAGKLERLLS*
Ga0075430_1005545241	3300006846	Populus Rhizosphere	PVEVTFTEPARYMRWSLPSLRSFMDRRPELRITLQGLVNRDLAGKLERVLP*
Ga0075431_1001761184	3300006847	Populus Rhizosphere	SSLRAFVDKRPEMRVTLQGMVSRDLAGKLERLLS*
Ga0075433_105778251	3300006852	Populus Rhizosphere	PAHYMRWSLPSLRRFMDKRPDLRGALQAMVNRDLAGKVGALLSP*
Ga0075433_107855372	3300006852	Populus Rhizosphere	RWSLPNLRRFIDKRPDLRVTLQGLVNRDLAAKLEALLSS*
Ga0075434_1015883831	3300006871	Populus Rhizosphere	PSLLAFMDRRPDLRVALQSLVSHDLTRKIDRLLAER*
Ga0075426_100606974	3300006903	Populus Rhizosphere	ALAADPSPVEMTFAEPARYMRWSLPSLRKFIDGRPDLRVILQGLVNRDLAQKLETVLS*
Ga0075424_1003239222	3300006904	Populus Rhizosphere	RYMCWPLHELRSFLDRRPDLRVTLQGLVNHDLARKLEALLGPSAR*
Ga0075435_1001743284	3300007076	Populus Rhizosphere	EIVFTEPARYMRWSLANLRSFMDKRPDLRVTLQGLVNRDLAGKLEKLLSAS*
Ga0066710_1023563062	3300009012	Grasslands Soil	LALTGEPSPVEVTFTEPTRYMRWSLPSLRRFMDKRPDLRVTLQSLVNRDLAGKLERLLS
Ga0111539_127891841	3300009094	Populus Rhizosphere	VTFTEPARYMRWSLPSLRRFMDTRPDLRVTLQGLVNRDLAEKLNLVVKET*
Ga0075418_108989211	3300009100	Populus Rhizosphere	GEPSPVEVTFTEPTRYMRWSLPSLRRFMDKRPDLRVTLQSLVNRDLAGKLERLLS*
Ga0114129_122626532	3300009147	Populus Rhizosphere	YMRWSLPSLRSFMDRRPELRITLQGLVNRDLAGKLERVLP*
Ga0105092_101138771	3300009157	Freshwater Sediment	NIRSFLDKRPELRITLQSLVNRDLAEKLEGVLSK*
Ga0075423_120094471	3300009162	Populus Rhizosphere	PSPVEVTFTEPARYMRWSLPSLRRFMDTRPDLRATLQGLVNRDLAGKLERLLS*
Ga0075423_127086032	3300009162	Populus Rhizosphere	LALTGEPSPVEVTFTEPARYMRWSLPSLRRFMDTRPDLRVTLQGLVNRDLAEKLNFVVKET*
Ga0105347_10923473	3300009609	Soil	TEPARYMRWSLPSLRSFMDKRPELRVALQGLVNRDLAGKLERVLS*
Ga0126307_114720292	3300009789	Serpentine Soil	TGEPSPVQVTFTEPARYMRWSLPSLRRFMDTRPDLRVTLQGLVNRDLAGKLERLLS*
Ga0126380_102958782	3300010043	Tropical Forest Soil	YMRWSVPSLRRFMDKRPDLRVALQGLVNHDLAGKVGQLLAR*
Ga0126380_111800612	3300010043	Tropical Forest Soil	MRWSLPDLKTFMDNRPELRVTLQQLVNRELAVKVEKLLSAR*
Ga0126384_115722462	3300010046	Tropical Forest Soil	PSPVDVTFTEPGRYISWPLASLHRFIDTRPDLRVTLQGLVSRDLAGKVERLLS*
Ga0126382_119344732	3300010047	Tropical Forest Soil	TFTEPSRYMSWPLSSLRTFVDKRPDLRVTLQGLVNRDLVTKLERLLS*
Ga0126306_111761711	3300010166	Serpentine Soil	PSPVEVTFTEPARYMRWSLPSLRRFMDKRPDLRVTLQGLVNRDLAGKLERVLA*
Ga0126376_102101803	3300010359	Tropical Forest Soil	ASLRRFIDKRPDLRVALQQLVNRDLVTKLGTLMPP*
Ga0126376_132305261	3300010359	Tropical Forest Soil	ALTGDPSPVEITFAEPARYMRWPLASLRRFIDKRPDLRVALQQLVNRDLVTKLGTLVPP*
Ga0126372_121958631	3300010360	Tropical Forest Soil	TGRARYICWPLSGIRAFLDKRPELRVTLQGLVNRDLAGKVERLLSV*
Ga0126377_117436941	3300010362	Tropical Forest Soil	SLRTFMDKKPDLRIALQGLVSRDLSGKLERLLPQ*
Ga0151490_10734071	3300011107	Soil	GPSPVDATFVNSGRYMSWPIANLRTFLDKRPELRTAIQGLISRDLARKIERLASRQINAS
Ga0137427_102771021	3300011445	Soil	VTFTEPARYMRWSLPSLRSFMDKRPELRVTLQGLVNRDLAGKLERVLS*
Ga0137364_104521412	3300012198	Vadose Zone Soil	VEVTFAEPARYMRWSLPSLRRFMDTRPDLRVTLQGLVNRDLAGKLERLLS*
Ga0137380_104468041	3300012206	Vadose Zone Soil	PSPVEVTFTEPARYMRWSLPSLRTFMDTRPDLRVTLQGLVNRDLAGKLERLLS*
Ga0137376_101163694	3300012208	Vadose Zone Soil	VEVIFAEFARYMRWSLPSLRRFIDKRPDLRVTLQGLVNRDLAGKLERLMS*
Ga0137379_105884562	3300012209	Vadose Zone Soil	VTFTEPARYMRWSLPSLRRFMDTRPDLRVTLQGLVNRDLAGKLERLMS*
Ga0137370_106989832	3300012285	Vadose Zone Soil	YMRWSLPSLRRFMDTRPDLRVTLQGLVNRDLAGKLERLLS*
Ga0137366_108690931	3300012354	Vadose Zone Soil	TRYMRWSLPSLRRFMDKRPDLRVTLRGLVNRDLAGKLERLLS*
Ga0157351_10520362	3300012501	Unplanted Soil	EPARYMRWSLPSLRKFIDGRPDLRVILQGLVNRDLAQKLETVLS*
Ga0137394_108588143	3300012922	Vadose Zone Soil	SLPSLRRFMDKRPDLRVALQALVNRDLAGKLGALLSP*
Ga0137359_104429251	3300012923	Vadose Zone Soil	SLPSLRRFMDTRPDLRVTLQGLVNRDLAGKLERLMS*
Ga0137404_109513232	3300012929	Vadose Zone Soil	SPVEVTFTEPARYMRWSLPSLRRFMDTRPDLRVTLQGLVNRDLAEKLNLVVKET*
Ga0126369_106100381	3300012971	Tropical Forest Soil	EPARYMRWSLPSLRRFVDNRPDLRVTLQGLMNRDLARKLETVLS*
Ga0164308_119119312	3300012985	Soil	MVSPVEVTFTEPARYMRWSLPSLRSFMDKRPDLRVTLQRLVNRDLAGKLERLLS*
Ga0137411_13177881	3300015052	Vadose Zone Soil	MRWSLPNLRSFMDKRPDLRVTLQSLVNRDLAGKLEKVLSA*
Ga0132258_115499893	3300015371	Arabidopsis Rhizosphere	MRWSVADLRTFMDKRPDLRVTLQQHVNRDLADKLEKLLSAS*
Ga0132258_137380241	3300015371	Arabidopsis Rhizosphere	TFAEPARYMRWSLPSLRKFIDSRPDLRVTLQGLVNRDLAGKLDTVLS*
Ga0132255_1051623892	3300015374	Arabidopsis Rhizosphere	EIVFAEPARYMRWSLPDLRVFMDKRPELRVTLQQLVNRDLAGKLEKVLSAS*
Ga0182036_100993391	3300016270	Soil	ARYISWPVESLRTFADKRPDLRVTLQALVSRDLARKVEELMS
Ga0182032_114664192	3300016357	Soil	TGSRSPVEATFTGSARYMSWPVESLRTFIDKRPDLRVALQGLVSRDLAGKVERLLVP
Ga0182040_118601512	3300016387	Soil	RWSLGNLRALLDRRPELRATLQGLVNRDLAVKLEELLSKE
Ga0182039_122494431	3300016422	Soil	SARYMSWPVASLRTFIDRRPDLRVALQGLVNRDLAWKLEQLIVP
Ga0187765_113344061	3300018060	Tropical Peatland	TGSARYISWPVASLRTFIDKRPDLRVALQGLVNRDLAWKLERLIIP
Ga0207643_109304511	3300025908	Miscanthus Rhizosphere	ALTGEPSPVEVTFTEPARYMRWSLPSLRRFMDSRPDLRVALQGLVNRDLAEKLNLVMKET
Ga0207644_117618441	3300025931	Switchgrass Rhizosphere	NALALAADPSPVEMTFAEPARYMRWSLPSLRKFIDGRPDLRVILQGLVNRDLAQKLETVL
Ga0207709_108197032	3300025935	Miscanthus Rhizosphere	TEPARYMSWPLPSLRTFMDKRPDLRVALQALVSRDLAGKVERLLPQSGSEGR
Ga0207709_116612931	3300025935	Miscanthus Rhizosphere	LQSLRSFIDRRPELRGTLQSLVNRDLATKLGHALSTG
Ga0207704_118658542	3300025938	Miscanthus Rhizosphere	TGRYMCWPLQSLRSFIDRRPELRGTLQSLVNRDLATKLGHALSTG
Ga0207689_109422302	3300025942	Miscanthus Rhizosphere	AGRYMCWPLQSLRSFIDRRPELRGTLQSLVNRDLASKLGQVLSTG
Ga0207712_113475181	3300025961	Switchgrass Rhizosphere	RYMSWPLPSLRTFMDKRPDLRVALQALVSRDLAGKVERLLPQSGSEGR
Ga0207648_108904481	3300026089	Miscanthus Rhizosphere	LTGAPSPVEATFTEPARYMSWPLPSLRAFMDKRPDLRVALQALVSRDLAVKVEGLLPQ
Ga0207648_113221801	3300026089	Miscanthus Rhizosphere	SLPDLRAFIDKRPELRVTLQQHVNRDLVGKLEKMLSAS
Ga0209470_10141905	3300026324	Soil	ALALTGEPSPVEVTFAEPARYMRWSLPSLRSFMDKRPDLRVTLQGLVNRDLAGKLERLMS
Ga0209057_11003411	3300026342	Soil	GEPSPVEVTFAEPARYMRWSLPSLRRFMDKRPDLRVTLQGLVNRDLAGKLERLMS
Ga0209159_12683602	3300026343	Soil	ALALTGEPSPVEVTFTEPTRYMRWSLPSLRRFMDKRPDLRVTLQGLVNRDLAGKLERLLS
Ga0209157_10905423	3300026537	Soil	TALALTGDPSPIDITFIEPAHYMRWSLPSLRRFMDKRPDLRVTLQGLVNRDLAGKLERLM
Ga0207428_106109692	3300027907	Populus Rhizosphere	SPVEVTFTEPARYMRWSLPSLRRFMDTRPDLRVTLQGLVNRDLAGKLERLLS
Ga0209382_122227372	3300027909	Populus Rhizosphere	PVEVTFTEPARYMRWSLPSLRSFMDRRPELRITLQGLVNRDLAGKLERVLS
Ga0247822_119391391	3300028592	Soil	RYMRWSVPNLRSFMDKRPDLRVTLQHLVNRDLAGKLEKLLSP
Ga0247820_107146242	3300028597	Soil	SLPDLRTFMDKRPELRVTLQQLVNRDLAGKLEKVLSPS
Ga0247824_107424341	3300028809	Soil	GEPSPVEVTFTEPARYMRWSLPSLRSFMDKRPELRITLQGLVNRDLAGKLERVLP
Ga0307497_101357313	3300031226	Soil	ARYMSWPLQSLRAFMDKRPDLRVALQALVSRDLAGKVERLLPQSGSEGR
Ga0310888_101711691	3300031538	Soil	ARYMRLSLPDLRTFMDRRPELRVTLQHLVNRDLAGKLEKVLSPS
Ga0310887_102615403	3300031547	Soil	LGSLRTFIDKRPDLRIALQGLVSRDLAGKLERLLPQ
Ga0318561_105349881	3300031679	Soil	LALTGSPSPVEATFTGSARYMSWPVPSLRTFIDKRPDLRVALQALFSRDLAEKIERLIAP
Ga0307468_1004469801	3300031740	Hardwood Forest Soil	ILTFTEPARYMRWPLPSLRRFMDKRPDLRVTLQGLVNRDLAGKVERLLS
Ga0307468_1009541871	3300031740	Hardwood Forest Soil	TGAPSPVEATFTEPARYMSWPLQSLRAFMDKRPDLRVALQALVSRDLAGKVERLLPQSGSEGR
Ga0307468_1011918563	3300031740	Hardwood Forest Soil	LASLRTFMDKRPDLRIALQGLVSRDLAGKVERLLPQ
Ga0306918_101084712	3300031744	Soil	RYMSWPVASLRTFIDRRPDLRVALQGLVNRDLAWKLERLMVP
Ga0318502_103612721	3300031747	Soil	YISWPVESLRTFADKRPDLRVTLQALVSRDLARKVEELMS
Ga0307475_112480651	3300031754	Hardwood Forest Soil	PARYMRWSLPSLRRFMDKRPDLRVTLQGLVNRDLAGKLERLLS
Ga0318554_103832721	3300031765	Soil	SWPVASLRTFIDRRPDLRVALQGLVNRDLAWKLERLMVP
Ga0318554_108439492	3300031765	Soil	EATFTGSARYMSWPVESLRTFIDKRPDLRVALQGLVSRDLAGKVERLLVP
Ga0318526_100364441	3300031769	Soil	TEAARYISWPVESLRTFADKRPDLRVTLQALVSRDLARKVEELMS
Ga0318546_104900662	3300031771	Soil	ARYMSWPVESLRTFIDKRPDLRVALQGLVSRDLAGKVERLLVP
Ga0318498_100544571	3300031778	Soil	SWPVESLRTFADKRPDLRVTLQALVSRDLARKVEELMS
Ga0318529_105458982	3300031792	Soil	YMSWPVPSLRTFIDKRPDLRVALQALFSRDLAEKIERLIAP
Ga0318548_105640241	3300031793	Soil	DATFTEAARYISWPVESLRTFADKRPDLRVTLQALVSRDLARKVEELMS
Ga0318550_105371722	3300031797	Soil	ARYMRWALPSLRKFIDSRPDLRVTLQGLVNHDLARKLETVLS
Ga0310892_103153823	3300031858	Soil	VPSLRTFMDKRPDLRVALQALVSRDLAGKVEQLLPQSGSERR
Ga0318544_101954642	3300031880	Soil	SLALTGAQSPVDATFTEAARYISWPVESLRTFADKRPDLRVTLQALVSRDLARKVEELMS
Ga0310893_101571711	3300031892	Soil	YMAWPLASLRTFMDKRPDLRIALQGLVSRDLAGKLERLLPQ
Ga0318536_104030881	3300031893	Soil	VEATFAGSARYMSWPVASLRTFIDRRPDLRVALQGLVNRDLAWKLEQLIVP
Ga0307412_106505011	3300031911	Rhizosphere	PSPVEVTFTEPARYMRWSLPSLRRFMDTRPDLRVTLQGLVNRDLARKLERALS
Ga0310912_100857331	3300031941	Soil	VEATFTGSARYMSWPVASLRTFIDRRPDLRVALQGLVNRDLAWKLERLMVP
Ga0310910_107149101	3300031946	Soil	MSWPVASLRTFIDRRPDLRVALQGLVNRDLAWKLERLMVP
Ga0318563_103372092	3300032009	Soil	AQSPVDATFTEPARYISWPVESLRTFADKRPDLRVTLQALVSRDLARKVEELMS
Ga0318514_105991661	3300032066	Soil	QSPVDATFTEPARYISWPVESLRTFADKRPDLRVTLQALVSRDLARKVEELMS
Ga0310890_110399081	3300032075	Soil	ATFTQPARYMAWPLASLRTFMDKRPDLRIVLQGLVSRDLAGKLERLLPQ
Ga0310890_112342743	3300032075	Soil	TGEPSPVEVTFTEPARYMRWSLPSLRKFMDTRPDLRVTLQGLVNRDLAEKLHRLVKQT
Ga0307471_1015337523	3300032180	Hardwood Forest Soil	DMALTGRARYMRWSLPSLRTFMDKRPDLRTTLQGLVNRDLAGKVEGLLT
Ga0307471_1016371931	3300032180	Hardwood Forest Soil	PVDMALTGPARYMRWSLPSLRTFMDKRPDLRTTLQGLVNRDLAGKVEGLLT
Ga0307472_1000295021	3300032205	Hardwood Forest Soil	RWSLPSLRRFMDTRPDLRVTLQGLVNRDLAGKLERLLS

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F079255

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences