Metagenome / Metatranscriptome Family F079245

Basic Information
Family ID	F079245
Family Type	Metagenome / Metatranscriptome
Number of Sequences	116
Average Sequence Length	45 residues
Representative Sequence	MIPLFIALAVACVAFWRVAVKILAAVALFLLVSGVVMVIQDMHHIR
Number of Associated Samples	99
Number of Associated Scaffolds	116

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	78.76 %
% of genes near scaffold ends (potentially truncated)	25.00 %
% of genes from short scaffolds (< 2000 bps)	84.48 %
Associated GOLD sequencing projects	93
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.53

Most Common Taxonomy
Group	Bacteria (55.172 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (18.965 % of family members)
Environment Ontology (ENVO)	Unclassified (17.241 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (56.897 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 59.46% β-sheet: 0.00% Coil/Unstructured: 40.54%
Feature Viewer

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Pfam ID	Name	% Frequency in 116 Family Scaffolds
PF01381	HTH_3	16.38
PF13087	AAA_12	10.34
PF05988	DUF899	6.90
PF00005	ABC_tran	3.45
PF00483	NTP_transferase	2.59
PF01588	tRNA_bind	1.72
PF02583	Trns_repr_metal	1.72
PF07969	Amidohydro_3	1.72
PF01047	MarR	1.72
PF13732	DUF4162	0.86
PF02577	BFN_dom	0.86
PF08840	BAAT_C	0.86
PF00498	FHA	0.86
PF03176	MMPL	0.86
PF14436	EndoU_bacteria	0.86
PF13604	AAA_30	0.86
PF02371	Transposase_20	0.86
PF02163	Peptidase_M50	0.86
PF00892	EamA	0.86
PF12802	MarR_2	0.86
PF00072	Response_reg	0.86

COG ID	Name	Functional Category	% Frequency in 116 Family Scaffolds
COG4312	Predicted dithiol-disulfide oxidoreductase, DUF899 family	General function prediction only [R]	6.90
COG0073	tRNA-binding EMAP/Myf domain	Translation, ribosomal structure and biogenesis [J]	1.72
COG1937	DNA-binding transcriptional regulator, FrmR family	Transcription [K]	1.72
COG2517	Predicted RNA-binding protein, contains C-terminal EMAP domain	General function prediction only [R]	1.72
COG1033	Predicted exporter protein, RND superfamily	General function prediction only [R]	0.86
COG1259	Bifunctional DNase/RNase	General function prediction only [R]	0.86
COG2409	Predicted lipid transporter YdfJ, MMPL/SSD domain, RND superfamily	General function prediction only [R]	0.86
COG3547	Transposase	Mobilome: prophages, transposons [X]	0.86

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	55.17 %
Unclassified	root	N/A	44.83 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	55.17 %
Unclassified	root	N/A	44.83 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	55.17 %
Unclassified	root	N/A	44.83 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	47.41 %
Unclassified	root	N/A	44.83 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.83 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	43.97 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.83 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	35.34 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.83 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	13.79 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	9.48 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	5.17 %
Catenulisporales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales	0.86 %
Propionibacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	0.86 %
Micromonosporales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales	0.86 %
Oxalobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae	0.86 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.83 %
Mycobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	12.07 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	9.48 %
Treboniaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae	2.59 %
Streptosporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	1.72 %
Massilia group	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Massilia group	0.86 %
unclassified Propionibacteriales	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → unclassified Propionibacteriales	0.86 %
unclassified Streptosporangiales	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → unclassified Streptosporangiales	0.86 %
Catenulisporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales → Catenulisporaceae	0.86 %
Nocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae	0.86 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	0.86 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.83 %
Mycobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	12.07 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	9.48 %
Trebonia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia	2.59 %
Streptosporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	1.72 %
Propionibacteriales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → unclassified Propionibacteriales → Propionibacteriales bacterium	0.86 %
Streptosporangiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → unclassified Streptosporangiales → Streptosporangiales bacterium	0.86 %
Pseudoduganella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Massilia group → Pseudoduganella	0.86 %
Catenulispora	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales → Catenulisporaceae → Catenulispora	0.86 %
Actinoplanes	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Actinoplanes	0.86 %
Nocardia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia	0.86 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.83 %
Mycobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	12.07 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	9.48 %
Trebonia kvetii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	2.59 %
Streptosporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	1.72 %
unclassified Nocardia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia → unclassified Nocardia	0.86 %
Pseudoduganella lurida	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Massilia group → Pseudoduganella → Pseudoduganella lurida	0.86 %
Actinoplanes subtropicus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Actinoplanes → Actinoplanes subtropicus	0.86 %
unclassified Catenulispora	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales → Catenulisporaceae → Catenulispora → unclassified Catenulispora	0.86 %
Propionibacteriales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → unclassified Propionibacteriales → Propionibacteriales bacterium	0.86 %
Streptosporangiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → unclassified Streptosporangiales → Streptosporangiales bacterium	0.86 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.83 %
Mycobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	12.07 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	9.48 %
Trebonia kvetii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	2.59 %
Streptosporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	1.72 %
Catenulispora sp. 13_1_20CM_3_70_7	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales → Catenulisporaceae → Catenulispora → unclassified Catenulispora → Catenulispora sp. 13_1_20CM_3_70_7	0.86 %
Nocardia sp. DSM 111727	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia → unclassified Nocardia → Nocardia sp. DSM 111727	0.86 %
Pseudoduganella lurida	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Massilia group → Pseudoduganella → Pseudoduganella lurida	0.86 %
Actinoplanes subtropicus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Actinoplanes → Actinoplanes subtropicus	0.86 %
Propionibacteriales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → unclassified Propionibacteriales → Propionibacteriales bacterium	0.86 %
Streptosporangiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → unclassified Streptosporangiales → Streptosporangiales bacterium	0.86 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.86 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001356\|JGI12269J14319_10054737	All Organisms → cellular organisms → Bacteria	2333	Open in IMG/M
3300001593\|JGI12635J15846_10486088	Not Available	730	Open in IMG/M
3300004080\|Ga0062385_10378664	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	839	Open in IMG/M
3300004082\|Ga0062384_101027383	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	591	Open in IMG/M
3300005175\|Ga0066673_10186430	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	1176	Open in IMG/M
3300005332\|Ga0066388_100695495	Not Available	1624	Open in IMG/M
3300005434\|Ga0070709_11221367	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	604	Open in IMG/M
3300005435\|Ga0070714_100698369	All Organisms → cellular organisms → Bacteria → Terrabacteria group	979	Open in IMG/M
3300005437\|Ga0070710_11341609	Not Available	533	Open in IMG/M
3300005712\|Ga0070764_10018357	All Organisms → cellular organisms → Bacteria	3473	Open in IMG/M
3300005995\|Ga0066790_10005792	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	5496	Open in IMG/M
3300006163\|Ga0070715_10939380	Not Available	535	Open in IMG/M
3300007788\|Ga0099795_10334349	Not Available	674	Open in IMG/M
3300009038\|Ga0099829_11780348	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	504	Open in IMG/M
3300009088\|Ga0099830_10309606	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	1262	Open in IMG/M
3300009089\|Ga0099828_10145424	All Organisms → cellular organisms → Bacteria	2090	Open in IMG/M
3300009090\|Ga0099827_10047747	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	3205	Open in IMG/M
3300009525\|Ga0116220_10403999	All Organisms → cellular organisms → Bacteria	611	Open in IMG/M
3300009698\|Ga0116216_10817375	Not Available	558	Open in IMG/M
3300009700\|Ga0116217_10084552	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2196	Open in IMG/M
3300010154\|Ga0127503_10244644	Not Available	561	Open in IMG/M
3300010343\|Ga0074044_10021534	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	4650	Open in IMG/M
3300010880\|Ga0126350_11536443	Not Available	989	Open in IMG/M
3300011120\|Ga0150983_11451134	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	1171	Open in IMG/M
3300012189\|Ga0137388_11050065	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	751	Open in IMG/M
3300012198\|Ga0137364_10676259	Not Available	779	Open in IMG/M
3300012198\|Ga0137364_11355362	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	528	Open in IMG/M
3300012199\|Ga0137383_10746021	Not Available	715	Open in IMG/M
3300012201\|Ga0137365_10417766	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	989	Open in IMG/M
3300012208\|Ga0137376_11315373	Not Available	613	Open in IMG/M
3300012363\|Ga0137390_11285648	Not Available	677	Open in IMG/M
3300012957\|Ga0164303_10251063	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Actinoplanes → Actinoplanes subtropicus	1014	Open in IMG/M
3300012960\|Ga0164301_10167035	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	1366	Open in IMG/M
3300012972\|Ga0134077_10414052	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	584	Open in IMG/M
3300012985\|Ga0164308_11580647	Not Available	605	Open in IMG/M
3300012989\|Ga0164305_10176716	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1477	Open in IMG/M
3300014166\|Ga0134079_10463087	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	604	Open in IMG/M
3300014493\|Ga0182016_10604998	Not Available	623	Open in IMG/M
3300014838\|Ga0182030_10088620	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4387	Open in IMG/M
3300014838\|Ga0182030_11105845	Not Available	686	Open in IMG/M
3300017821\|Ga0187812_1093320	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales → Catenulisporaceae → Catenulispora → unclassified Catenulispora → Catenulispora sp. 13_1_20CM_3_70_7	987	Open in IMG/M
3300017928\|Ga0187806_1273800	Not Available	589	Open in IMG/M
3300017946\|Ga0187879_10083462	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	1843	Open in IMG/M
3300017947\|Ga0187785_10276185	Not Available	763	Open in IMG/M
3300017948\|Ga0187847_10285444	Not Available	901	Open in IMG/M
3300017959\|Ga0187779_10143240	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	1469	Open in IMG/M
3300017972\|Ga0187781_10317631	All Organisms → cellular organisms → Bacteria	1106	Open in IMG/M
3300017972\|Ga0187781_10750177	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	707	Open in IMG/M
3300018046\|Ga0187851_10188984	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1229	Open in IMG/M
3300019787\|Ga0182031_1386266	Not Available	1445	Open in IMG/M
3300019887\|Ga0193729_1223305	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	623	Open in IMG/M
3300020581\|Ga0210399_10079393	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	2664	Open in IMG/M
3300020581\|Ga0210399_10153288	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → unclassified Propionibacteriales → Propionibacteriales bacterium	1906	Open in IMG/M
3300020582\|Ga0210395_11084191	All Organisms → cellular organisms → Bacteria	591	Open in IMG/M
3300020582\|Ga0210395_11314766	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	529	Open in IMG/M
3300020582\|Ga0210395_11396232	Not Available	511	Open in IMG/M
3300021170\|Ga0210400_11485471	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	538	Open in IMG/M
3300021171\|Ga0210405_10680611	Not Available	796	Open in IMG/M
3300021180\|Ga0210396_10419067	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → unclassified Streptosporangiales → Streptosporangiales bacterium	1176	Open in IMG/M
3300021181\|Ga0210388_11251355	Not Available	628	Open in IMG/M
3300021402\|Ga0210385_10133193	Not Available	1764	Open in IMG/M
3300021402\|Ga0210385_11061041	Not Available	622	Open in IMG/M
3300021406\|Ga0210386_10086277	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	2552	Open in IMG/M
3300021406\|Ga0210386_10614595	All Organisms → cellular organisms → Bacteria → Terrabacteria group	938	Open in IMG/M
3300021406\|Ga0210386_10670273	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	894	Open in IMG/M
3300021479\|Ga0210410_11256716	Not Available	632	Open in IMG/M
3300022724\|Ga0242665_10030017	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	1330	Open in IMG/M
3300025625\|Ga0208219_1017581	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2156	Open in IMG/M
3300025634\|Ga0208589_1141235	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	551	Open in IMG/M
3300025906\|Ga0207699_10189992	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	1385	Open in IMG/M
3300025929\|Ga0207664_10437471	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1166	Open in IMG/M
3300026294\|Ga0209839_10004872	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	6242	Open in IMG/M
3300026494\|Ga0257159_1060402	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	648	Open in IMG/M
3300026551\|Ga0209648_10020092	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	5841	Open in IMG/M
3300027165\|Ga0208608_112355	Not Available	564	Open in IMG/M
3300027570\|Ga0208043_1115121	Not Available	719	Open in IMG/M
3300027882\|Ga0209590_10256563	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	1116	Open in IMG/M
3300027884\|Ga0209275_10140136	All Organisms → cellular organisms → Bacteria	1274	Open in IMG/M
3300027903\|Ga0209488_11013215	Not Available	574	Open in IMG/M
3300028773\|Ga0302234_10212106	Not Available	836	Open in IMG/M
3300028775\|Ga0302231_10371670	Not Available	601	Open in IMG/M
3300028863\|Ga0302218_10172783	Not Available	687	Open in IMG/M
3300028877\|Ga0302235_10383213	Not Available	603	Open in IMG/M
3300028877\|Ga0302235_10476468	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	531	Open in IMG/M
3300028879\|Ga0302229_10174064	Not Available	991	Open in IMG/M
3300029943\|Ga0311340_10428361	Not Available	1206	Open in IMG/M
3300029943\|Ga0311340_10490494	Not Available	1101	Open in IMG/M
3300029999\|Ga0311339_11165454	Not Available	708	Open in IMG/M
3300030053\|Ga0302177_10018967	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4423	Open in IMG/M
3300030399\|Ga0311353_10596094	Not Available	966	Open in IMG/M
3300030399\|Ga0311353_10787210	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	813	Open in IMG/M
3300030490\|Ga0302184_10109761	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1237	Open in IMG/M
3300030524\|Ga0311357_10232062	Not Available	1791	Open in IMG/M
3300030578\|Ga0210275_10283864	Not Available	570	Open in IMG/M
3300030618\|Ga0311354_11078214	Not Available	735	Open in IMG/M
3300030626\|Ga0210291_10711703	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	520	Open in IMG/M
3300030740\|Ga0265460_11299280	Not Available	707	Open in IMG/M
3300031040\|Ga0265754_1009987	Not Available	739	Open in IMG/M
3300031231\|Ga0170824_115231989	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	807	Open in IMG/M
3300031234\|Ga0302325_10368968	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Massilia group → Pseudoduganella → Pseudoduganella lurida	2264	Open in IMG/M
3300031234\|Ga0302325_10920865	Not Available	1209	Open in IMG/M
3300031446\|Ga0170820_14415118	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	679	Open in IMG/M
3300031546\|Ga0318538_10598928	Not Available	598	Open in IMG/M
3300031708\|Ga0310686_109519185	Not Available	549	Open in IMG/M
3300031708\|Ga0310686_115741829	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1921	Open in IMG/M
3300032089\|Ga0318525_10139693	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia → unclassified Nocardia → Nocardia sp. DSM 111727	1242	Open in IMG/M
3300032160\|Ga0311301_10617170	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1556	Open in IMG/M
3300032205\|Ga0307472_101081988	All Organisms → cellular organisms → Bacteria → Terrabacteria group	757	Open in IMG/M
3300032756\|Ga0315742_11264262	Not Available	765	Open in IMG/M
3300032756\|Ga0315742_11891246	Not Available	660	Open in IMG/M
3300032828\|Ga0335080_11453198	All Organisms → cellular organisms → Bacteria	680	Open in IMG/M
3300032893\|Ga0335069_11876372	Not Available	634	Open in IMG/M
3300034163\|Ga0370515_0213661	Not Available	820	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	93.10%
Aquatic	Environmental → Aquatic	6.90%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	77.59%
Peat	Environmental → Terrestrial → Peat	15.52%
Freshwater	Environmental → Aquatic → Freshwater	6.90%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	52.59%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	15.52%
Loam	Environmental → Terrestrial → Soil → Loam	12.93%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	12.07%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	6.03%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.86%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	26.72%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	23.28%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	15.52%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	6.90%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.90%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	5.17%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	5.17%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	4.31%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	1.72%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	1.72%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.86%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.86%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.86%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	18.97%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	15.52%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	12.07%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	6.90%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	5.17%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	3.45%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	3.45%
Bog	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog	3.45%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.45%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	3.45%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	2.59%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	2.59%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	1.72%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	1.72%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.72%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	1.72%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	1.72%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	1.72%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	1.72%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.86%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.86%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.86%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	0.86%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	0.86%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.86%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.86%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	0.86%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001356	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007	Environmental	Open in IMG/M
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300004080	Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300004082	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3	Environmental	Open in IMG/M
3300005175	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005712	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4	Environmental	Open in IMG/M
3300005995	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-050	Environmental	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300007788	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009525	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_7_NC metaG	Environmental	Open in IMG/M
3300009698	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG	Environmental	Open in IMG/M
3300009700	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG	Environmental	Open in IMG/M
3300010154	Soil microbial communities from Willow Creek, Wisconsin, USA - WC-WI-TBF metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010343	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1	Environmental	Open in IMG/M
3300010880	Boreal forest soil eukaryotic communities from Alaska, USA - C5-1 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012972	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300014166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09182015	Environmental	Open in IMG/M
3300014493	Permafrost microbial communities from Stordalen Mire, Sweden - 712S2M metaG	Environmental	Open in IMG/M
3300014838	Permafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300017821	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_2	Environmental	Open in IMG/M
3300017928	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_1	Environmental	Open in IMG/M
3300017946	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_10	Environmental	Open in IMG/M
3300017947	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0815_BV2_4_20_MG	Environmental	Open in IMG/M
3300017948	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_10	Environmental	Open in IMG/M
3300017959	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_10_MG	Environmental	Open in IMG/M
3300017972	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300018046	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_10	Environmental	Open in IMG/M
3300019787	Permafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (PacBio error correction)	Environmental	Open in IMG/M
3300019887	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c2	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021402	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300022724	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-17-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300025625	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 53-2 shallow-072012 (SPAdes)	Environmental	Open in IMG/M
3300025634	Arctic peat soil from Barrow, Alaska - NGEE Surface sample F53-2 shallow-092012 (SPAdes)	Environmental	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300026294	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-050 (SPAdes)	Environmental	Open in IMG/M
3300026494	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-07-A	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300027165	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF035 (SPAdes)	Environmental	Open in IMG/M
3300027570	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_9_AC metaG (SPAdes)	Environmental	Open in IMG/M
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027884	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300028773	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N3_2	Environmental	Open in IMG/M
3300028775	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N2_2	Environmental	Open in IMG/M
3300028863	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E1_1	Environmental	Open in IMG/M
3300028877	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N3_3	Environmental	Open in IMG/M
3300028879	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N1_3	Environmental	Open in IMG/M
3300029943	I_Palsa_N3 coassembly	Environmental	Open in IMG/M
3300029999	I_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030053	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E1_2	Environmental	Open in IMG/M
3300030399	II_Palsa_E2 coassembly	Environmental	Open in IMG/M
3300030490	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_N3_3	Environmental	Open in IMG/M
3300030503	III_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030524	II_Palsa_N3 coassembly	Environmental	Open in IMG/M
3300030578	Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO105-VCO054SO (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030618	II_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030626	Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO410-VDE110SO (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030740	Forest Soil Metatranscriptomes Boreal Montmorency Forest, Quebec, Canada ARE Co-assembly	Environmental	Open in IMG/M
3300031040	Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSE6 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031234	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2	Environmental	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300032089	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f23	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032756	Forest Soil Metatranscriptomics Site 2 Humus Litter Mineral Combined Assembly	Environmental	Open in IMG/M
3300032828	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4	Environmental	Open in IMG/M
3300032893	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1	Environmental	Open in IMG/M
3300034163	Peat soil microbial communities from wetlands in Alaska, United States - Goldstream_04D_14	Environmental	Open in IMG/M

Geographical Distribution

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Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.53
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.53
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F079245

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12269J14319_100547372	3300001356	Peatlands Soil	MLPFFIALAVASVAFWRAALKILVAVAVFLVVAGVVMVIQDLHHLR*
JGI12635J15846_104860882	3300001593	Forest Soil	MIPLYIALAVACVAFWKVAWKILAAAALFLFVSGVIMVIQDLHHLR*
Ga0062385_103786642	3300004080	Bog Forest Soil	MLPFFIALAVASLAFWRVALKIMVIVAIFLIVSGVVLIIQDLHHLR*
Ga0062384_1010273831	3300004082	Bog Forest Soil	MIPFFIALAFACVAFWRVTIKLMAIVALFLLVSGVVMIVQHMHHLR*
Ga0066673_101864302	3300005175	Soil	MTPFFIALAVASVAFWRAAIKILAAVALFLLASGVVTVVHYMHQLR*
Ga0066388_1006954952	3300005332	Tropical Forest Soil	MMPFIIALAIACIAFWRAALKILVIVLLFLLASGVVMVIQDMHHVVK*
Ga0070709_112213671	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MTPFFIALAVASVAFWRAAIKILAAVALFLLASGVVTVVHYMHLLG*
Ga0070714_1000444815	3300005435	Agricultural Soil	MILFLIALAVACAAFWKVALRILAAVVIFLVISGAIMVIQDLHHMR*
Ga0070714_1006983692	3300005435	Agricultural Soil	MIPFFIALAVASVAFWRAAIKILAAATLFLLASGVVMVVQYMHHLR*
Ga0070710_113416092	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MMPLIIALAIACVAFWRAALRILVIVMLFLLASGVVMVIQDMHH
Ga0070764_100183571	3300005712	Soil	MIPLFIALAVACLAFWKVAVKILAAVALFLIVSGVVMVIQDMQHIK*
Ga0066790_100057923	3300005995	Soil	MIALFIAIAVACVAFWRVAAKILAAVALFLLVSGVVMVIQDLHHMR*
Ga0070715_109393801	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	MIPFFIALAVASVAFWRAAIKILAAAALFLLASGVV
Ga0099795_103343492	3300007788	Vadose Zone Soil	MLSFYIALAVACVAFWRVAWKLLAAVAIFLLVSGVVMVIQDLHHIR*
Ga0099829_117803481	3300009038	Vadose Zone Soil	FIALAVACVVFWRVAWKLLVVVALFLLVSGVVMFIQDLHHLR*
Ga0099830_103096062	3300009088	Vadose Zone Soil	MLSFFIALAVACVVFWRVAWKLLVVVALFLLVSGVVMFIQDLHHLR*
Ga0099828_101454242	3300009089	Vadose Zone Soil	LSFFIALAVASVVFWRVAWKLLVVVALFLLVSGVVMFIQDLHHLR*
Ga0099827_100477472	3300009090	Vadose Zone Soil	MISFFIALAVACVVFWRVAWKILVIVALFLLVSGVVMFIQDLHHLR*
Ga0116220_104039991	3300009525	Peatlands Soil	ALAVASLAFWRVALKIMVIVAIFLIVSGVVLIIQDLHHLR*
Ga0116216_108173752	3300009698	Peatlands Soil	VASLAFWRVALKIMVIVAIFLIVSGVVLIIQDLHHLR*
Ga0116217_100845523	3300009700	Peatlands Soil	VAFWRVALKILVAVAIFLVVTGVVMVIQDLHHLK*
Ga0127503_102446442	3300010154	Soil	MTPFFIALAIASVAFWRAAIKILAAVALFLLASGVVTVVHYMHHLG*
Ga0074044_100215341	3300010343	Bog Forest Soil	MIPLLIATAVACWAFWRVAWKILALAAIVMFVSGLVMIVQDLHHIIR*
Ga0126350_115364432	3300010880	Boreal Forest Soil	MIPFFIAIIVACVAFWKVAAKLLVAVALFLLVSGIVMVVQDLHHIAR*
Ga0150983_114511342	3300011120	Forest Soil	MIPLFIALAVACVAFWRVAIKILAAAALFLVVSGIVLVVQDMHHLR*
Ga0137388_110500651	3300012189	Vadose Zone Soil	MISFFIALAVACVVFWRVAWKLLVVVALFLLVSGVVMFIQDLHHLR*
Ga0137364_106762591	3300012198	Vadose Zone Soil	MTPFFIALAVASVAFWRAAIKILAAAALFLLASGVITVVHYMHHIR*
Ga0137364_113553622	3300012198	Vadose Zone Soil	VAFWRAAIKILAAVALFLLASGVVTVVHYMHQLR*
Ga0137383_107460212	3300012199	Vadose Zone Soil	MTPFFIALAVASVAFWRAAIKILAAVALFLLASGVVTVVQYMHHLR*
Ga0137365_104177662	3300012201	Vadose Zone Soil	VAFWRAAIKILAAVALFLLASGVVTVVQYMHHLR*
Ga0137376_113153732	3300012208	Vadose Zone Soil	MTPFFIALAVASVAFWRAAIKILAAVALFLLASGVVTVV
Ga0137390_112856481	3300012363	Vadose Zone Soil	DAHGPVRNRMLSFYIALAVACVAFWRVAWKLLAAVAIFLLVSGVVMVIQDLHHIR*
Ga0164303_102510632	3300012957	Soil	GNRMIPFFIALAVASVAFWRAAIKILAAATLFLLASGVVMVVQYMHHLR*
Ga0164301_101670352	3300012960	Soil	MTPFFIALAVASVAFWRAAIKILAAVALFLLASGVVTVVHYMHHLG*
Ga0134077_104140521	3300012972	Grasslands Soil	AVASVAFWRAAIKILAAVALFLLASGVVTVVHYMHHIR*
Ga0164308_115806472	3300012985	Soil	MIPFFIALAVASVAFWRAAIKILAAVALFLLASGVVTVVHYMHHLG*
Ga0164305_101767162	3300012989	Soil	MIPFFIALAVASVAFWRAAIKILAAAALFLLASGVVMVVQYMHHLR*
Ga0134079_104630872	3300014166	Grasslands Soil	MIPFFIALAVASVAFWRAAIKILAAAALFLLASGVITVVHYMHHIR*
Ga0182016_106049982	3300014493	Bog	MIPLFIALAVACIAFWKVAVKLLAALAIFLVVSGVVMVIQDMHHIR*
Ga0182030_100886207	3300014838	Bog	MIPLFIALAVACVAFWRVAAKILAAIALFLLVSGIVMVIQDMHHIR*
Ga0182030_111058451	3300014838	Bog	MIPLFIALAVACIAFWKVAVKLLAALAIFLVVSGVVMVIQDMHH
Ga0187812_10933202	3300017821	Freshwater Sediment	MLPFFIALAVASMAFWRVALKVLVAVAVFLIVSGVVMVIQDLHHLK
Ga0187806_12738001	3300017928	Freshwater Sediment	MLPFFIALAVASMAFWRVALKVLVAVAVFLIVSGVVMVIQD
Ga0187879_100834621	3300017946	Peatland	MIPLFIALAVACVAFWKVAVKILAAVALFLLVSGVVMVIQDMHHLR
Ga0187785_102761851	3300017947	Tropical Peatland	MIPFFIALAVASVAFWRAAIKILAAAALFLIAAGVVMVVQYMHHLR
Ga0187847_102854442	3300017948	Peatland	MIPLYIALAVACVAFWKVAAKILAAVALFLLVSGLVMVIQDMHHLR
Ga0187779_101432402	3300017959	Tropical Peatland	MIPLLIGLFIACVAFWKVAWKILAAVALFLLVTGAVMVIQDLHHVVR
Ga0187781_103176312	3300017972	Tropical Peatland	MLALFFALAVACLAFWRAALKILAAVALFLLVSGIVMVIQDMHHIR
Ga0187781_107501772	3300017972	Tropical Peatland	MIPLLVALFIACMAFWKVAWKILAAVALFLLVSGAVMVIQDLHHVVR
Ga0187851_101889841	3300018046	Peatland	MIPLFIALAVACVAFWKVAVKVLAAVALFLLVSGVVMVIQDMHHIR
Ga0182031_13862662	3300019787	Bog	MIPLFIALAVACVAFWKVAVKLLAAVALFLLVSGVVMVIQDMHHIR
Ga0193729_12233052	3300019887	Soil	MTPFFIALAVASVAFWRAAIKILAAVALFLLASGVVTVVHYMHHLR
Ga0210399_100793932	3300020581	Soil	MTPFFIALAIASVAFWRAAIKILAAVALFLLASGVVTVVHYMHHLG
Ga0210399_101532883	3300020581	Soil	MLPFYIALAIACVAFWRVALKILVAVAIFLVVSGVIMVIQDLHHLR
Ga0210395_110841912	3300020582	Soil	MIPFFIALAVACVAFWRVAIKLLAIVALFLLVTGVVMVVQDMHHLR
Ga0210395_113147662	3300020582	Soil	MTPFFIALAIASVAFWRAAIKILAAVALFLLASGVVTVVHYMHQLR
Ga0210395_113962321	3300020582	Soil	LAVACLAFWKVAVKVLAAVALFLIVSGVVMVIQDMQHIK
Ga0210400_114854711	3300021170	Soil	TPFFIALAVASVAFWRAAIKILAAVALFLLASGVVTVVHYMHQLR
Ga0210405_106806111	3300021171	Soil	MLPLYIALAIACAAFWRVALKILVAVAIFLIVSGVVMVIQDLHHLR
Ga0210396_104190673	3300021180	Soil	MLPFYIALAIACAAFWRVALKILVAVAIFLIVSGVVMVIQDLHHLR
Ga0210388_112513551	3300021181	Soil	MIPLFIALAVACLAFWKVAVKVLAAVALFLIVSGVVMVIQDMQHIK
Ga0210385_101331932	3300021402	Soil	MIPFFIALAVACVAFWRVAIKLIAIVALFLLVSGVVMVVQDMHHLR
Ga0210385_110610412	3300021402	Soil	MIPFFIALAVACIAFWRVAIKILVAVAIFLLVSGVVMVIQDLHHIR
Ga0210386_100862773	3300021406	Soil	MLPLYIALAIACAAFWRVALKILVAVAIFLVVSGVVMVIQDLHHLR
Ga0210386_106145951	3300021406	Soil	MIPFFIALAVACVAFWRVAIKLMMIVALFLLVSGVVMVVQDMHHFR
Ga0210386_106702732	3300021406	Soil	MIPFYIAIAVACVAFWKVAAKLLMAVALFLLVSGIVMVINDLHHIAH
Ga0210410_112567161	3300021479	Soil	MTPFFIALAIASVAFWRAAIKILAAVALFLLASGVVT
Ga0242665_100300172	3300022724	Soil	MTPFIIALAVASVAFWRAAIKILAAVALFLLASGVVTVVHYMHQLR
Ga0208219_10175813	3300025625	Arctic Peat Soil	MIPFYIAIIVACVAFWKVAAKLLVAVALFLLVSGVVMVIQDLHHIAH
Ga0208589_11412351	3300025634	Arctic Peat Soil	MLPLLIAIAVACIAFWKVAWKLLAIAVIFMLVMGVVMVVQYLHHMGMIR
Ga0207699_101899921	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	MIPFFIALAVASVAFWRAAIKILAAVALFLLASGVVTVVHYMHQLR
Ga0207664_100744133	3300025929	Agricultural Soil	MILFLIALAVACAAFWKVALRILAAVVIFLVISGAIMVIQDLHHMR
Ga0207664_104374712	3300025929	Agricultural Soil	PFSIALAVASVAFWRAAIKILAAVALFLLASGVVTVVHYMHQLR
Ga0209839_100048728	3300026294	Soil	MIALFIAIAVACVAFWRVAAKILAAVALFLLVSGVVMVIQDLHHMR
Ga0257159_10604021	3300026494	Soil	TPFFIALAVASVAFWRAAIKILAAVALFLIASGVVTVVHYMHHLG
Ga0209648_100200925	3300026551	Grasslands Soil	MLSFYIALAVACVAFWRVAWKLLAAVAIFLLVSGVVMVIQDLHHIK
Ga0208608_1123551	3300027165	Forest Soil	MIPLFIALAVACLAFWKVAWKILVAVALFLIASGVVMVIQDMQHIK
Ga0208043_11151211	3300027570	Peatlands Soil	MLPFFIALAVASVAFWRAALKILVAVAVFLVVAGVVMVIQDLHHLR
Ga0209590_102565632	3300027882	Vadose Zone Soil	MISFFIALAVACVVFWRVAWKILVIVALFLLVSGVVMFIQDLHHLR
Ga0209275_101401362	3300027884	Soil	MTPFFIALAVASLAFWRAAIKILAVVALFLLASGVVTVVHYMHHLG
Ga0209488_110132152	3300027903	Vadose Zone Soil	MLSFYIALAVACVAFWRVAWKLLAAVAIFLLVSGVVMVIQDLHHIR
Ga0302234_102121061	3300028773	Palsa	MIPLFIALAVACLAFWKVAVKILAAVALFLIVSGVVMVIQDMQHIK
Ga0302231_103716701	3300028775	Palsa	LFIALAVACVAFWKVAAKILAAVALFLLVSGVVMVIQDMHHLR
Ga0302218_101727831	3300028863	Palsa	MIPLFIALAVACVAFWKVAAKILAAVALFLLVSGVVMVIQDM
Ga0302235_103832131	3300028877	Palsa	MIPFYIAIIVACVAFWKVAAKLLVAVALFLLVSGIVMVINDLHHIAH
Ga0302235_104764682	3300028877	Palsa	MIPLFIALAVACVAFWKVAVKLLAAVALFLLVSGVVMVIQDMHHLR
Ga0302229_101740642	3300028879	Palsa	MIPFYIAIIVACVAFWKVAAKLLVAVALFLLVSGIVMVLNDLHHLAH
Ga0311340_104283612	3300029943	Palsa	MIPLYIALAVACVAFWKVAAKILAAVALFLVVSGVVMVIQDMHHIR
Ga0311340_104904942	3300029943	Palsa	MIPLFIALAVACVAFWRVAVKILAAVALFLLVSGVVMVIQDMHHIR
Ga0311339_111654541	3300029999	Palsa	PAVPRRLPGLVRSPMIPFYIAIIVACVAFWKVAAKLLVAVALFLLVSGIVMVLNDLHHLA
Ga0302177_100189675	3300030053	Palsa	MIPLFIALAVACVAFWKVAAKILAAVALFLLVSGVVMVIQDMHHLR
Ga0311353_105960942	3300030399	Palsa	PLFIALAVACLAFWKVAVKILAAVALFLIVSGVVMVIQDMQHIK
Ga0311353_107872102	3300030399	Palsa	MIPLYIALVVACVAFWKVAAKILAAVALFLFVSGVIMVIQDMHHLR
Ga0302184_101097611	3300030490	Palsa	MIPLFIALAVACVAFRKVAVKLLAAVALFLLVSGVVMVIQDMHHLR
Ga0311370_107427502	3300030503	Palsa	MSPFLIALAVACVAFWKVALKILGIVVIFLIITGTIMVIQDLHHAR
Ga0311357_102320621	3300030524	Palsa	AVACVAFWKVAVKILAAVALFLLVSGIVMVIQDMHHIR
Ga0210275_102838641	3300030578	Soil	MLPLFIALAVACVAFWRVAIKILAAAALFLIVSGVVLVVQDMHHLR
Ga0311354_110782141	3300030618	Palsa	ALAVACVAFWRVAVKILAAVALFLLVSGVVMVIQDMHHIR
Ga0210291_107117031	3300030626	Soil	MLPLFIALAVACVAFWKVAAKLLAAVALFLLVSGIVMVIHDLHNIAH
Ga0265460_112992801	3300030740	Soil	MLPLFIALAVACVAFWRVAIKILAAAALFLIVSGAVLVVQDMHHLR
Ga0265754_10099872	3300031040	Soil	MIPFFIALAVASVAFWRAAIKILAAVALFLLVSGVVMVVQYMHHLR
Ga0170824_1152319891	3300031231	Forest Soil	MTPFFIALAVASVAFWRAAIKILAAVALFLLASGVVTVVHYMHHLG
Ga0302325_103689681	3300031234	Palsa	MIPFLIALAVACVAFWKVALKILGIVVIFLIITGTIMVIQDLHHAR
Ga0302325_109208652	3300031234	Palsa	MIPLYIALAVACVAFWKVAAKILAAVALFLIVSGVVMVIQDMHHLR
Ga0170820_144151181	3300031446	Forest Soil	MTPFFIALAVASVAFWRAAIKILAVVALFLLASGVVTVVHYMHHLG
Ga0318538_105989281	3300031546	Soil	MIPFFIALAVASVAFWRAAIKILAAAALFLIAAGVVMVVQY
Ga0310686_1095191851	3300031708	Soil	RMIPFFIALAVGCVAFWRVAIKLMAVVALFLLVSGAVVVVQYMHHLR
Ga0310686_1157418292	3300031708	Soil	MIPLFIALAVACLAFWKVAVKILAAVALFLIVSGVVLVIQDMQHIK
Ga0318525_101396932	3300032089	Soil	MIPLLIGLFIACVAFWKVAWKILAAVALFLLVSGAVLVIQDLHHVVR
Ga0311301_106171702	3300032160	Peatlands Soil	MLPFFIALAVASLAFWRVALKIMVIVAIFLIVSGVVLIIQDLHHLR
Ga0307472_1010819881	3300032205	Hardwood Forest Soil	IPFFIALAVASVAFWRAAIKILAAAALFLLASGVVMVVQYMHHLR
Ga0315742_112642622	3300032756	Forest Soil	MIPFFIAIAVACVAFWRVAAKLLVAVALFLLVSGIVMVIQDLHHIK
Ga0315742_118912462	3300032756	Forest Soil	MIPLLIAFAVACWAFWRVAWKILAFAAIVMFVSGLVMVVQDLHHVIR
Ga0335080_114531982	3300032828	Soil	MIPLLIGLFIACVAFWKVAWKILAAVALFLLVSGAVMVIQDLHHVVR
Ga0335069_118763721	3300032893	Soil	MIPFFIALAVASVAFWRAAIKIMAAAALFLIAAGVVMVVQYMHHIR
Ga0370515_0213661_453_593	3300034163	Untreated Peat Soil	MIPLFIALAVACVAFWRVAVKILAAVALFLLVSGVVLVIQDMHHIR

Hidden Markov Model


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