Metagenome Family F079239

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F079239
Family Type	Metagenome
Number of Sequences	116
Average Sequence Length	90 residues
Representative Sequence	MPKSTAPKRRRSPPKISALEKTALRIMRKLYEATGGQPQRWESLDNLGAVKADAAGVAYAVERDWLIISGGFHSVSLTEAGRRRVK
Number of Associated Samples	81
Number of Associated Scaffolds	116

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	25.86 %
% of genes near scaffold ends (potentially truncated)	47.41 %
% of genes from short scaffolds (< 2000 bps)	84.48 %
Associated GOLD sequencing projects	72
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.34

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (56.034 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (21.552 % of family members)
Environment Ontology (ENVO)	Unclassified (32.759 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (52.586 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 35.09% β-sheet: 7.02% Coil/Unstructured: 57.89%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.34
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.34
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 116 Family Scaffolds
PF00565	SNase	6.03
PF00486	Trans_reg_C	5.17
PF05494	MlaC	4.31
PF08241	Methyltransf_11	2.59
PF00072	Response_reg	1.72
PF00561	Abhydrolase_1	0.86
PF13817	DDE_Tnp_IS66_C	0.86
PF13683	rve_3	0.86
PF05717	TnpB_IS66	0.86
PF13560	HTH_31	0.86
PF02586	SRAP	0.86
PF05050	Methyltransf_21	0.86
PF00196	GerE	0.86
PF12860	PAS_7	0.86
PF00011	HSP20	0.86
PF01381	HTH_3	0.86
PF00248	Aldo_ket_red	0.86
PF01925	TauE	0.86

COG ID	Name	Functional Category	% Frequency in 116 Family Scaffolds
COG2854	Periplasmic subunit MlaC of the ABC-type intermembrane phospholipid transporter Mla	Cell wall/membrane/envelope biogenesis [M]	4.31
COG0071	Small heat shock protein IbpA, HSP20 family	Posttranslational modification, protein turnover, chaperones [O]	0.86
COG0730	Sulfite exporter TauE/SafE/YfcA and related permeases, UPF0721 family	Inorganic ion transport and metabolism [P]	0.86
COG2135	ssDNA abasic site-binding protein YedK/HMCES, SRAP family	Replication, recombination and repair [L]	0.86
COG3436	Transposase	Mobilome: prophages, transposons [X]	0.86

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.03 %
All Organisms	root	All Organisms	43.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.03 %
cellular organisms	root	All Organisms → cellular organisms	43.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.03 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	43.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.03 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	37.07 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	0.86 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.03 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	28.45 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.86 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.86 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.03 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	9.48 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2.59 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.86 %
Patescibacteria group	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group	0.86 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.03 %
unclassified Rhodospirillales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales	7.76 %
Reyranellaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Reyranellaceae	1.72 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.86 %
Parcubacteria group	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group	0.86 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.03 %
Rhodospirillales bacterium URHD0017	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017	7.76 %
Reyranella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Reyranellaceae → Reyranella	1.72 %
unclassified Parcubacteria group	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → unclassified Parcubacteria group	0.86 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.86 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.03 %
Rhodospirillales bacterium URHD0017	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017	7.76 %
Reyranella soli	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Reyranellaceae → Reyranella → Reyranella soli	1.72 %
Parcubacteria group bacterium GW2011_GWA2_47_8	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → unclassified Parcubacteria group → Parcubacteria group bacterium GW2011_GWA2_47_8	0.86 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.86 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.86 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001661\|JGI12053J15887_10010370	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	5085	Open in IMG/M
3300001661\|JGI12053J15887_10011398	All Organisms → cellular organisms → Bacteria	4876	Open in IMG/M
3300001661\|JGI12053J15887_10100174	All Organisms → cellular organisms → Bacteria → Proteobacteria	1571	Open in IMG/M
3300005445\|Ga0070708_100587439	Not Available	1050	Open in IMG/M
3300005445\|Ga0070708_100717368	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017	941	Open in IMG/M
3300005610\|Ga0070763_10019955	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2941	Open in IMG/M
3300005610\|Ga0070763_10047953	All Organisms → cellular organisms → Bacteria → Proteobacteria	2021	Open in IMG/M
3300005610\|Ga0070763_10264760	Not Available	936	Open in IMG/M
3300005712\|Ga0070764_10786046	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017	591	Open in IMG/M
3300005921\|Ga0070766_10083347	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1865	Open in IMG/M
3300005952\|Ga0080026_10240165	Not Available	545	Open in IMG/M
3300005995\|Ga0066790_10133578	Not Available	1064	Open in IMG/M
3300006050\|Ga0075028_100077617	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1654	Open in IMG/M
3300006050\|Ga0075028_100102217	All Organisms → cellular organisms → Bacteria → Proteobacteria	1464	Open in IMG/M
3300006050\|Ga0075028_100509263	Not Available	704	Open in IMG/M
3300006057\|Ga0075026_100862054	Not Available	554	Open in IMG/M
3300006163\|Ga0070715_11084013	Not Available	503	Open in IMG/M
3300006176\|Ga0070765_100387347	Not Available	1303	Open in IMG/M
3300006176\|Ga0070765_100598525	All Organisms → cellular organisms → Bacteria	1039	Open in IMG/M
3300006176\|Ga0070765_100850026	Not Available	862	Open in IMG/M
3300007265\|Ga0099794_10119656	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Reyranellaceae → Reyranella → Reyranella soli	1324	Open in IMG/M
3300009088\|Ga0099830_11388943	Not Available	584	Open in IMG/M
3300009089\|Ga0099828_10522707	Not Available	1070	Open in IMG/M
3300009143\|Ga0099792_10230809	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1068	Open in IMG/M
3300009650\|Ga0105857_1135628	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	681	Open in IMG/M
3300009650\|Ga0105857_1226831	Not Available	551	Open in IMG/M
3300009660\|Ga0105854_1159470	Not Available	732	Open in IMG/M
3300009660\|Ga0105854_1360982	Not Available	521	Open in IMG/M
3300010159\|Ga0099796_10495851	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	547	Open in IMG/M
3300011270\|Ga0137391_10066840	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3083	Open in IMG/M
3300011271\|Ga0137393_11348530	Not Available	602	Open in IMG/M
3300012096\|Ga0137389_11755071	Not Available	516	Open in IMG/M
3300012203\|Ga0137399_10823461	Not Available	782	Open in IMG/M
3300012205\|Ga0137362_11455620	Not Available	571	Open in IMG/M
3300012209\|Ga0137379_11599912	Not Available	550	Open in IMG/M
3300012363\|Ga0137390_10136809	All Organisms → cellular organisms → Bacteria → Proteobacteria	2430	Open in IMG/M
3300012363\|Ga0137390_11369523	Not Available	652	Open in IMG/M
3300012683\|Ga0137398_10737124	Not Available	686	Open in IMG/M
3300012924\|Ga0137413_10030739	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2944	Open in IMG/M
3300012925\|Ga0137419_10919027	Not Available	721	Open in IMG/M
3300012944\|Ga0137410_10428886	Not Available	1070	Open in IMG/M
3300012944\|Ga0137410_10644740	Not Available	879	Open in IMG/M
3300015241\|Ga0137418_10209933	All Organisms → cellular organisms → Bacteria → Proteobacteria	1677	Open in IMG/M
3300015242\|Ga0137412_10128976	Not Available	2047	Open in IMG/M
3300019877\|Ga0193722_1146912	Not Available	517	Open in IMG/M
3300019882\|Ga0193713_1092461	Not Available	846	Open in IMG/M
3300019887\|Ga0193729_1111146	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Reyranellaceae → Reyranella → Reyranella soli	1031	Open in IMG/M
3300019887\|Ga0193729_1260514	Not Available	541	Open in IMG/M
3300019889\|Ga0193743_1207024	Not Available	617	Open in IMG/M
3300020021\|Ga0193726_1080869	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1498	Open in IMG/M
3300020021\|Ga0193726_1166924	Not Available	948	Open in IMG/M
3300020034\|Ga0193753_10191381	Not Available	945	Open in IMG/M
3300020034\|Ga0193753_10194063	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017	936	Open in IMG/M
3300020034\|Ga0193753_10238434	Not Available	814	Open in IMG/M
3300020034\|Ga0193753_10343136	Not Available	623	Open in IMG/M
3300020061\|Ga0193716_1051167	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1925	Open in IMG/M
3300020199\|Ga0179592_10096964	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1354	Open in IMG/M
3300020579\|Ga0210407_10003666	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	12362	Open in IMG/M
3300020581\|Ga0210399_10491935	Not Available	1020	Open in IMG/M
3300020582\|Ga0210395_10777179	Not Available	715	Open in IMG/M
3300020582\|Ga0210395_11101910	Not Available	586	Open in IMG/M
3300020583\|Ga0210401_10704711	Not Available	870	Open in IMG/M
3300021086\|Ga0179596_10708923	Not Available	509	Open in IMG/M
3300021088\|Ga0210404_10900221	Not Available	506	Open in IMG/M
3300021178\|Ga0210408_10152272	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017	1832	Open in IMG/M
3300021180\|Ga0210396_11437252	All Organisms → cellular organisms → Bacteria → Proteobacteria	569	Open in IMG/M
3300021401\|Ga0210393_11405153	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	557	Open in IMG/M
3300021402\|Ga0210385_11302103	Not Available	557	Open in IMG/M
3300021404\|Ga0210389_10008462	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	7955	Open in IMG/M
3300021404\|Ga0210389_10199890	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1559	Open in IMG/M
3300021404\|Ga0210389_11466363	Not Available	519	Open in IMG/M
3300021407\|Ga0210383_11137454	Not Available	658	Open in IMG/M
3300021420\|Ga0210394_11737833	Not Available	521	Open in IMG/M
3300021478\|Ga0210402_10372940	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1324	Open in IMG/M
3300021478\|Ga0210402_10416168	Not Available	1248	Open in IMG/M
3300021478\|Ga0210402_10737158	Not Available	909	Open in IMG/M
3300021478\|Ga0210402_10739442	All Organisms → cellular organisms → Bacteria	908	Open in IMG/M
3300021478\|Ga0210402_10799792	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	868	Open in IMG/M
3300021559\|Ga0210409_10124770	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2366	Open in IMG/M
3300022756\|Ga0222622_10039602	Not Available	2585	Open in IMG/M
3300022756\|Ga0222622_10871736	Not Available	659	Open in IMG/M
3300025910\|Ga0207684_10507064	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1034	Open in IMG/M
3300025922\|Ga0207646_10357406	Not Available	1320	Open in IMG/M
3300026481\|Ga0257155_1069739	Not Available	565	Open in IMG/M
3300026551\|Ga0209648_10078981	All Organisms → cellular organisms → Bacteria → Proteobacteria	2751	Open in IMG/M
3300026551\|Ga0209648_10202451	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1514	Open in IMG/M
3300026557\|Ga0179587_10148574	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017	1459	Open in IMG/M
3300026557\|Ga0179587_10155801	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1426	Open in IMG/M
3300027164\|Ga0208994_1057377	Not Available	583	Open in IMG/M
3300027480\|Ga0208993_1037978	Not Available	861	Open in IMG/M
3300027546\|Ga0208984_1010626	All Organisms → cellular organisms → Bacteria	1755	Open in IMG/M
3300027633\|Ga0208988_1040766	Not Available	1193	Open in IMG/M
3300027633\|Ga0208988_1071556	Not Available	873	Open in IMG/M
3300027669\|Ga0208981_1008794	All Organisms → cellular organisms → Bacteria	2554	Open in IMG/M
3300027681\|Ga0208991_1043818	Not Available	1352	Open in IMG/M
3300027738\|Ga0208989_10007472	All Organisms → cellular organisms → Bacteria → Proteobacteria	3708	Open in IMG/M
3300027738\|Ga0208989_10060654	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017	1303	Open in IMG/M
3300027855\|Ga0209693_10441267	Not Available	626	Open in IMG/M
3300027855\|Ga0209693_10543887	Not Available	552	Open in IMG/M
3300027879\|Ga0209169_10184203	Not Available	1090	Open in IMG/M
3300027889\|Ga0209380_10180801	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017	1236	Open in IMG/M
3300027889\|Ga0209380_10778738	Not Available	544	Open in IMG/M
3300027894\|Ga0209068_10339390	All Organisms → cellular organisms → Bacteria	849	Open in IMG/M
3300027903\|Ga0209488_10190274	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017	1547	Open in IMG/M
3300027908\|Ga0209006_10099767	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2575	Open in IMG/M
3300028047\|Ga0209526_10212410	All Organisms → cellular organisms → Bacteria → Proteobacteria	1336	Open in IMG/M
3300028768\|Ga0307280_10284624	Not Available	600	Open in IMG/M
3300028819\|Ga0307296_10459667	Not Available	696	Open in IMG/M
3300028906\|Ga0308309_10026395	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3913	Open in IMG/M
3300028906\|Ga0308309_10034044	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017	3527	Open in IMG/M
3300031057\|Ga0170834_108555097	Not Available	571	Open in IMG/M
3300031446\|Ga0170820_13742751	Not Available	518	Open in IMG/M
3300031474\|Ga0170818_101915979	Not Available	544	Open in IMG/M
3300031474\|Ga0170818_109848364	Not Available	504	Open in IMG/M
3300031474\|Ga0170818_113886424	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → unclassified Parcubacteria group → Parcubacteria group bacterium GW2011_GWA2_47_8	1074	Open in IMG/M
3300032174\|Ga0307470_10708742	Not Available	768	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	93.97%
Aquatic	Environmental → Aquatic	6.03%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	93.97%
Sediment	Environmental → Aquatic → Sediment	6.03%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	59.48%
Loam	Environmental → Terrestrial → Soil → Loam	29.31%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	6.03%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	5.17%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	33.62%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	25.00%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	24.14%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	6.03%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	5.17%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.31%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.72%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	21.55%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	18.97%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	12.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	12.07%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	12.07%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	4.31%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	4.31%
Permafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost Soil	4.31%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.31%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.72%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.72%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.86%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	0.86%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001661	Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300005712	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300005952	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 1 DNA2013-045	Environmental	Open in IMG/M
3300005995	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-050	Environmental	Open in IMG/M
3300006050	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014	Environmental	Open in IMG/M
3300006057	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2012	Environmental	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300007265	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300009650	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil DNA_2013-061	Environmental	Open in IMG/M
3300009660	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil DNA_2013-058	Environmental	Open in IMG/M
3300010159	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300015241	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015242	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300019877	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2m1	Environmental	Open in IMG/M
3300019882	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H3a2	Environmental	Open in IMG/M
3300019887	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c2	Environmental	Open in IMG/M
3300019889	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2c2	Environmental	Open in IMG/M
3300020021	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c1	Environmental	Open in IMG/M
3300020034	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1c2	Environmental	Open in IMG/M
3300020061	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2c1	Environmental	Open in IMG/M
3300020199	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021086	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021402	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026481	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-19-A	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027164	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_O3 (SPAdes)	Environmental	Open in IMG/M
3300027480	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM2_M3 (SPAdes)	Environmental	Open in IMG/M
3300027546	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M3 (SPAdes)	Environmental	Open in IMG/M
3300027633	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_M1 (SPAdes)	Environmental	Open in IMG/M
3300027669	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM1_M1 (SPAdes)	Environmental	Open in IMG/M
3300027681	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M2 (SPAdes)	Environmental	Open in IMG/M
3300027738	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M1 (SPAdes)	Environmental	Open in IMG/M
3300027855	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3 (SPAdes)	Environmental	Open in IMG/M
3300027879	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4 (SPAdes)	Environmental	Open in IMG/M
3300027889	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)	Environmental	Open in IMG/M
3300027894	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012 (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300028768	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_119	Environmental	Open in IMG/M
3300028819	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_153	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12053J15887_100103703	3300001661	Forest Soil	MPKTRDYVECRMKTASPKRRPSRRSPPKISPLEKSAVRIMRKLHEATGGQPQRWETLGNLGAVKSDAAAIAYAVERAWLLISGGLHSLSLTEDGRQRLK*
JGI12053J15887_100113987	3300001661	Forest Soil	MPKSTPKRRSAPKISAVEKTAVRIMRKLHEATGGRPQRWESLDNLGAGNGDAAGIAYGVERRWLRISGRAHSVSLTAPHAGPKLSS*
JGI12053J15887_101001743	3300001661	Forest Soil	RSRRSPPKISAVEKTAVRIMRKLYEATGGQTQRWESLGNLGAVKADAVGIAYAVEMDWLIISGGRTRCASLRPAAA*
Ga0070708_1005874392	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MPKSTAPKRRPAKISAVEKTAVRLMRKLYEATGGQPQRWESLGNLGAVRADAAGIAYAAERDWLIISGGLPSLSLTEAGRQRLK*
Ga0070708_1007173681	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	VTAEDASRPIVSRRSCRTSRRNPPKISAVEKTAVRIIRKLYEATGGQPQRWESLGNLGVVKADAVGIAYAIERDWLIISGGFHSVSLTDAGRRRVK*
Ga0070763_100199551	3300005610	Soil	PMPKSTAPKRRRSPPKISAVETTAVRIMRKVDEATGGQPQRWESLDNLAAAKADAAGIAYAVERNWLIISGGLHSVSLTEAGRQRLKAR*
Ga0070763_100479533	3300005610	Soil	MANMPRATRTKRASQIKKHRRPSPRSAPKTSAVEKTAVRISGKFYEATGGRPQRWESLGNLGVVNADAAGIAYAIERDWLVVSGGLHSVSLTEDGRRRVK*
Ga0070763_102647601	3300005610	Soil	EADCTPMANMPRATRTKRASQIKKRRRPSPRSAPKTSAVEKTAVRIMRKLHEATGGQPQRWEALGNLDAVKADAAGIAYAVERNWLIISGGLHSVTLTEDGRRRVK*
Ga0070764_107860462	3300005712	Soil	PMPKSTAPKRRSPPKISAVETTAVRIMRKLYDATGGRPQRWESLDNLAAAKADAAGIAYAVERNWLIISGGLHSVSLTEAGRQRLKAR*
Ga0070766_100833473	3300005921	Soil	GGRRSLILARQIWIVQAKKTASPNRRRSPPKISAVEKTAVRIMGKLYEATGNQPQRWESLGNLGAVKADAAGIAYAVEKDWRIISGGLHSVSLTEDGRRRVKSR*
Ga0080026_102401652	3300005952	Permafrost Soil	MASETMPKPTAPKRRRSPTRVSTVEKTAVRIMRKLYEATGGQPQRWESLDNLGVVKADAAGIAYAVERDWLIISGGLHSVSLTEAGRQRLKAR*
Ga0066790_101335782	3300005995	Soil	MPKSTAPKRRRSPPKISTLENAALRIMRKLYEATGGQPQRWESLDNLGVVKADATGIAYAIERDWLIISGGLHLLSLTEAGRRRVK*
Ga0075028_1000776171	3300006050	Watersheds	ISAVEKTAVRIMRKLYAATGGQPQRWESLGNLGAVKADAAGIAYAVERDWLIISGGLHSVSLTEAGRALGYRRTGQDSIL*
Ga0075028_1001022171	3300006050	Watersheds	GYVECRMKTASPKRRRRQRSPPEISAVEKTAVRIMRKLYEATGGQPQRWESLGNLGAVQADAAAIAYAVEQGWLVISGGFHSLSLTEDGRQRLK*
Ga0075028_1005092632	3300006050	Watersheds	MPKSTVPKRRNPPKTSALEEAAVRIMRKLHEATGGQPQRWESLGNLGAVKADAAGIAYAVERNWLIISGGLHSVSLTEDGRHRVAT*
Ga0075026_1008620541	3300006057	Watersheds	MPKSTAPKRRRTPPKISALEKSALRIMRNLYEATGGKPQRWESLDNLGAVKADAAGIAYAIERDWLTISGGSLHSVSLTEEGRRRLKAR*
Ga0070715_110840131	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	GVAPKLRQRPPKISAVEKATVRIMRKVYEATGGQPQRWESLGNLGAVKADAAGIAYAVERGWLRISGGLHSVSLTADGRQRLK*
Ga0070765_1003873473	3300006176	Soil	MPKSTAPKRRSSRRSPPKIGGLEKAAVRIMRKLYEATGGQPQRWESLGNLGVVKADAAAIAYAIERDWLIISGGLHSVTLTEAGSAG*
Ga0070765_1005985253	3300006176	Soil	PVLRPTSVSSAASWLHEADCTPMANMPRATRTKRASQIKKRRRPSPRSAPKTSAVEKTAVRIMRKLHEATGGQPQRWEALGNLDAVKADAAGIAYAVERNWLIISGGLHSVTLTEDGRRRVK*
Ga0070765_1008500262	3300006176	Soil	ANMPRATRTKRASQIKKHRRPSPRSAPKTSAVEKTAVRISGKFYEATGGRPQRWESLGNLGVVNADAAGIAYAIERDWLVVSGGLHSVSLTEDGRRRVK*
Ga0099794_101196563	3300007265	Vadose Zone Soil	MKTASPKRRASRRSPPKISAVEKTAVRIMRKLYEATGGQPQRWESLGNLGAVKADAAGIGYAVERDCLIISGGLHSVSLTEAGRRRLAADRSRP*
Ga0099830_113889431	3300009088	Vadose Zone Soil	MPKSTAPKHRTSRRSPPKISAVEKTAVRIIRKLYEATGGQPQRWESLGNLGAGKADAAGIAYAVERDWLVISGGLHSLSLTEAGRQRLKAR*
Ga0099828_105227072	3300009089	Vadose Zone Soil	MKTASPKRRRSRRNPPKISAVEKTAVRIMRKLYEATGGQPQRWESLGNLGATKADAAGIAYAVERDWLIISGGLHSVSLTEARPPAVEVAASP*
Ga0099792_102308091	3300009143	Vadose Zone Soil	KRRRSRRSPPKISALEKTAVRIMRKLYEATGGQPQRWESLGNLGTVASDAASIAYAVERGWLIISGGLHSVSLTEAGRRRVKARWP*
Ga0105857_11356282	3300009650	Permafrost Soil	MPKSTAPKRRSSRRSPPKISALEKAAVRIMRELYEATGGQPQRWESLGNLGAAKSDAAAITYAVERGWLLISGGLHSVSLTEAGRRRVESR*
Ga0105857_12268311	3300009650	Permafrost Soil	MPKSTAPKRRRSPPKISTLENAALRIMRKLYEATGGQPQRWESLDNLGVVKADAAGIAYAIERDWLIISDGLHSVSLTEARSAPGGITLDNAENIQGRE*
Ga0105854_11594701	3300009660	Permafrost Soil	PRYVCTRIANMPKSTAPKRRRRLPEISAVEKTALRIMRKLHEATGGKPQRWESLGNLGALASDAAGIAYAVERDWLIISGGLHSVSLTEAGRRRLKVR*
Ga0105854_13609821	3300009660	Permafrost Soil	KTRGYVECRMKTASPKRRSSRRRPPKISAVEKAAVRIMRKLYEATGGQPQRWESLGNLGAAKSDAAAITYAVERGWLLISGGLHSVSLTEAGRQRLKGR*
Ga0099796_104958511	3300010159	Vadose Zone Soil	RSAPKISAIEKTAVRIMRQLYEAPGGQPQRWESLGNLGTVASDAAGIAYAVEMEWLIISGGLHSVSLTEAGRRRLK*
Ga0137391_100668401	3300011270	Vadose Zone Soil	PPKISAVEKTAVRIMRKLYEATGGQPQRWESLGNLGTVASDAAGIAYAVERDWLIISGGLHSVSLTKAGRRRVKARWP*
Ga0137393_113485301	3300011271	Vadose Zone Soil	MVVSPKRRRSRRSPPKISAVAKTAVRIMRKLYEATGGKPQRWESLGNLGAVASDAAGIAYAIERDWLIISGGLHSVSLTEDGRRRLKSR*
Ga0137389_117550711	3300012096	Vadose Zone Soil	MPKSTAPKRRPSPPKIGALEKSAVRIMRKLHEATGGQPQRWEPLGNLGTVEADAAGIAYAVERDWLMISSGAHSVSLTEAGHQRLK*
Ga0137399_108234611	3300012203	Vadose Zone Soil	MKTASPKRRRSRRSPPKISAIEKTAIRIMRKLYEATGGQPQRWESLGNLGTVASDAAGIAYAVERGWLIISGGLHSVSLTEAGRRL
Ga0137362_114556201	3300012205	Vadose Zone Soil	MVVSPKRRRSQRSPPKISAVEKTAVRIMRKLYEATGGQPQRWESLGNLGAVKADAVGIAYAVEMDWLIISAGFHSVSLTEAGRRRLGIALAKWKPEQAQ*
Ga0137379_115999121	3300012209	Vadose Zone Soil	RSPPKISALEKLAVRIMRNLYEATGGKPQRWESLDNLGAVKADAAGIAYAIERDWLIISGSSLHSVSLTEAGRRRVKSR*
Ga0137390_101368091	3300012363	Vadose Zone Soil	MKTASPKRRRSRRSPPKISALEKAAVRIMRKLYEATGGQPQRWESLGNLGAVKSDAGGIAYAVEMDWLIISGGFHSVSLTDAGRRRVKQPPRGGNAQLPER*
Ga0137390_113695232	3300012363	Vadose Zone Soil	MKTASPKRRRSPPKISAVEKTAVRIMRKLYEATGGQPQRWGSLGNLGTVEADAAGVAYAVERNWLIISGGLH*
Ga0137398_107371241	3300012683	Vadose Zone Soil	MKTASPKRRASRRSPPKISAVEKTAVRIMRKLYEATGGQPQRWESLGNLGAVKADAVGIAYAVEMDWLLISDGFHSVNLTDAGRRRLESR*
Ga0137413_100307395	3300012924	Vadose Zone Soil	MVVSPKRRRRPPRISAVEKTVVRIMRKLYEATGGQPQRWESLGNLGTVASDAAGIAYAVERDWRIISGGLHSVSLTEAGRRRVKARWP*
Ga0137419_109190273	3300012925	Vadose Zone Soil	CAFSLKAPMPKSTPKRRSAPKISAVEKTAVRIMRKLHEATGGRPQRWESLDNLGAGKGDAAGIAYGVERRWLRISGGAHSVSLTAPHAGPKLSS*
Ga0137410_104288862	3300012944	Vadose Zone Soil	GSAWPSLYAARLYPESLMPKSTAPKRRRSPPKISAVETRALRIMRILYEATGGRAQRWESLGNLGAVKADAPGIAYAVERGWLRISGGLHSLSLTEDGRQRLE*
Ga0137410_106447403	3300012944	Vadose Zone Soil	MPKSTAPKRRRSPPKISALEKTALRIMRKLYEATGGQPQRWESLDNLGAVKADAAGVAYAVERDWLIISGGFHSVSLTEAGRRRVK*
Ga0137418_102099333	3300015241	Vadose Zone Soil	MKTASPKRRRSRRSPPRISAIEKTAIRIMRKLYEATGGQPQRWESLGNLGTVASDAAGIAYAVERGWLIISGGLHSVSLTEAGRRRLAT*
Ga0137412_101289763	3300015242	Vadose Zone Soil	MPKSTAPKRRRSPAKISALEKSAVRIMRKLYEATGGLPQRWESLGNLGAVKSDAPGIAYAVERGWLRISGGLHSLGLTEGGRQRLK*
Ga0193722_11469121	3300019877	Soil	APMPRATLTKRASQIEKQGRRSSRRSALKISALEKTAVRIMRKFYEATGGQPQRWKSLGNLGAVKADASGIAYAVEQDWLPISGGLHSVSLTEDGRRRLE
Ga0193713_10924613	3300019882	Soil	MPKSTVPKRRRSPPKISAVEKTAVRIMLKLYEATSGQPQRWESLGNLGTVTADAAGIAYAVEKGWLTISGGLHSVSLTEAGRQRLK
Ga0193729_11111461	3300019887	Soil	LSQDENCFTEAPKKPKSAKISAVEKTVVRIMRKLYEATGGQPQRWESLGNLGVVKADAVGIAYAVEMDWLIISGRFHSVSLTEAGR
Ga0193729_12605141	3300019887	Soil	MKRTHPKVVVEKAAVRIKRKLHEATGGRPQRWESLGNLGAVKADAAGIGYAVERGWLRISGGLHSLSLTADGRQRLK
Ga0193743_12070241	3300019889	Soil	SMPKSIPKSRKSRRSPPKISAVEKIAVCIMRKLYEATGGQPQQWGSLGNLGAANADAANNAYSVERDWLIVSGGRTR
Ga0193726_10808694	3300020021	Soil	MPKSTPKRRSSRRSPPKIGALEKAAVRIMRKLYEATGGQSQRWESLDNLGAGIGDAAGIAYGVERGWLRISGGAHSVSLTEAGRQRLK
Ga0193726_11669242	3300020021	Soil	MPKSTAPKRSRRRPPKIGALEKAAIRIMRKLYEATGGRPQRWESLDNLGAVKADAAGIAYAIERDWLIVISGSLHSVSLTEAGRRRVKATKLKLKDAKNRSKRA
Ga0193753_101913812	3300020034	Soil	MPKSTAPKRSRRSTPKISAVEKAAVRIMRKLHEATGGRPQRWESLGDLGAVEADAAGIAYAVEQGWLKISGGLHSLSLTDAGRQRLK
Ga0193753_101940633	3300020034	Soil	MPRATQTKGSRRSPPKISAVEKTAVRIMRKLHEATGGQPQRWESLGNLGTVAADVVGIAYAVEREWLIISGGLHSVSLTEAGRRRLK
Ga0193753_102384341	3300020034	Soil	RCAFSPKAPMPKSTPKRRSSRRSPPKIGALEKAAVRIMRKLYEATGGQSQRWESLDNLGAGIGDAAGIAYGVERGWLRISGGAHSVSLTEAGRQRLK
Ga0193753_103431361	3300020034	Soil	MSDVRLCYAFPPIAPTSKRTSPKSRRSPPKIGALEKAAIRIMRKLYEATGGRPQRWESLDNLGAVKADAAGIAYAIERDWLIIISGSLHSVSLTEVGRRRVKATKLKLKDAKNRSKRT
Ga0193716_10511674	3300020061	Soil	KRRSSRRSPPKIGALEKAAVRIMRKLYEATGGQSQRWESLDNLGAGIGDAAGIAYGVERGWLRISGGAHSVSLTEAGRQRLK
Ga0179592_100969641	3300020199	Vadose Zone Soil	VRQLGMVVSPKRRRRPPRISAVEKTAVRIMRKLYEATGGQPQRWESLGNLGTVASDAAGIAYTVERDWLIISGGLHSVSLTEAGRRRVKARWP
Ga0210407_1000366614	3300020579	Soil	MKTASPKRRSSRRSAPKISAVEKTAIRIMHKLYEATGGQQQRWEFLGNLGAIEADAAGIAYAIERNWLIISGGLRSLHAGAVH
Ga0210399_104919351	3300020581	Soil	GCRMKTASPKRRSRRSPPKISALEKSALRIMRKLYAATGGKPQRWESLDNLGAVKADAGGIAYAIERDWLIISSGSLHSVSLTETGRQRLKSR
Ga0210395_107771791	3300020582	Soil	TPKRRRTPPKISALEKAALRIMRNLYEATGGKPQRWESLDNLGAVKADAGGIAYAIERDWLIISGGSLHSVSLTEDGRRRLKAR
Ga0210395_111019101	3300020582	Soil	TPIANMRKSTAPKRRRSPLKISAVEKTAVRIMRKLYEATGGKPQRWESLDNLGAVKADAAGIAYAIERDWLIISGGSLHSVSLTEAGRQRLKAR
Ga0210401_107047111	3300020583	Soil	GRRRGRRSPPKTSALEKSAVRIMRKLYEATGGRPQRWESLGNLGVVASDAAGIAYAIDKDWLIISGGLHSVTLTEAGRQRLK
Ga0179596_107089231	3300021086	Vadose Zone Soil	MKTASPKRRRSPPKISAVEKTAVRIMRKLYEATGGQPQRWESLGNLGTVEADAAGVAYAVERNWLIISGGLH
Ga0210404_109002211	3300021088	Soil	AGYTRPRCSSSLIAPMPESTAPKRRRSRQSPPKISAVEKAAVRIMRKLYEATGGLPQRWESLGNLGVVASDAAGIAYAVKKGWLIISGGLHSVSLTEDGRQRLKSR
Ga0210408_101522725	3300021178	Soil	KRASQIKKRRRPSPRSAPKTSAVEKTAVRIMRKLHEATGGQPERWEALGNLDAVKADAAGIAYAVERNWLIISGGCTR
Ga0210396_114372521	3300021180	Soil	PKSTAPKRRRSRRSAPKISAYEKAAVRIMRKLYEATGGKPQRWESLGNLGATKADAAGIAYAIERDWLIIISGGLHSVSLTEDGRQRVK
Ga0210393_114051531	3300021401	Soil	HCRSLIAPMPKSTAPKRRSSRRSPPKIGGLEKAAVRIMRKLYEATGGQPERWESLDNLGAVKADAAAIAYAAERDWLVISGGAHSVRLTEDGRRRVK
Ga0210385_113021031	3300021402	Soil	MPKSTAPKRRSSRRSPPKIGGLEKAAVRIMRKLYEATGGQPQRWESLGNLGVVKADAAAIAYAIERDWLIISGGLHSVTLTEAGSAG
Ga0210389_100084622	3300021404	Soil	MPKNTAPKRRRTPPKISALEKSAVRIMRKLHEATGGKPQRWESLDNLGAVKADAAGIAYAIERDWLIISGGSLHSVSLTEAGRRRVK
Ga0210389_101998901	3300021404	Soil	IAPMPKSTAPKRRSSRRSPPKIGGLEKAAVRIMRKLYEATGGQPQRWESLGNLGVVKADAAAIAYAIERDWLIISGGLHSVTLTEAGSAG
Ga0210389_114663632	3300021404	Soil	CRMKTASPKRRKNRRSAPKISALEKSALRIMRKLYTATDGKPQRWESLDNLGAVKADAAGIAYAIERDWLVISGGSLHSVSLTEAGRQRWKSH
Ga0210383_111374541	3300021407	Soil	MPRAIRTKRSRRSPPKISALEKSALRIMRNLYEATGGKPQRWESLDNLGAVKADAAGIAYAIERDWLIISGGSLHSVSLTEDGRQRLKATKPKPQKN
Ga0210394_117378331	3300021420	Soil	RTPPKISALEMAALRIMRNLYEATGGKPQRWESLDNLGAVKADAAGIAYAIERDWLVISVGSLHSVSLTEAGRERLKAARAR
Ga0210402_103729401	3300021478	Soil	TPPKISALEKSALRFMRKLYEATGGQPQRWESLDNLSAVKADAAGIAYAIERDWLIISGGSLHSVSLTEDGRQRLKSR
Ga0210402_104161683	3300021478	Soil	MPKGTAPKRRRSPPKISAVEKAALRIMHNLYEATGSKPQREESLDNLGAVKTDAAGIAYAIERDWLIISGGSLHSVSLTDDGRRQLKSR
Ga0210402_107371582	3300021478	Soil	NTKRRAPKVSALERSAVRIMRKLYAATGGKPQRWESLDNLGAVKADAAGIAYAIERDWLIISGGSLHSVSLTEDGRQRLKATKPKPQKN
Ga0210402_107394421	3300021478	Soil	MKTASPKRRRIQRSPPKISAVEKMAVRIMRKLYEATGGKPQRWESLGNLGVVNADVAGIAYAVEKGRVIISGGLHSISLTEDGRQRVKVR
Ga0210402_107997923	3300021478	Soil	MPKNTAPKRRRTPPKISALEKSAVRIMRKLYEATGGNPLRWESLDNLGAVKADAAGIAYAIERDWLVISGGLHSVSLTEVGRQRLKLR
Ga0210409_101247701	3300021559	Soil	LPKTRGYVGCRMKTASPKRRSRRSPPKISALEKSALRIMHKLYAATGGKPQRWESLDNLGAVKADAAGIAYAIERDWLIISGGSLHSVSLTETGRQRLKSR
Ga0222622_100396026	3300022756	Groundwater Sediment	MKAASPKRRRSPPKISALEKAAIGIMRKVSEATGGQPQQWESLDNQGMVAADAAGIAYAVERGWLIISGGFHSVSLTEAGRQRLK
Ga0222622_108717362	3300022756	Groundwater Sediment	MPKNTAPKKSPKISALEKAAIRIMRKVYEATGGQPQRWESLGNLGTVAADAAGIAYAVERDWLIISGGFHSVSLTEAGRQRLE
Ga0207684_105070641	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	VTAEDASRPIVSRRSCRTSRRNSPKISAVEKTAVRIIRKLYEATGGQPQRWESLGNLGVVKADAVGIAYAIERDWLIISGGFHSVSLTDAGRRRVK
Ga0207646_103574063	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MPKSTAPKRRPAKISAVEKTAVRLMRKLYEATGGQPQRWESLGNLGAVRADAAGIAYAAERDWLIISGGLPSLSLTEAGRQRLK
Ga0257155_10697392	3300026481	Soil	MRPRYDCTPIANMPKRTAPKRRTSRRRPQKISAVEKTAVRIMRKLYEATGGQPQRWESLGNLGAGEADAAGIAYAVERGWLIISGGLHSVSLTEAGRRRVK
Ga0209648_100789813	3300026551	Grasslands Soil	MKTASPKRRRSRRSPPKISTVEKTAVRIMRKLYEATGGQPQRWESLGNLGAVKADAAGIAYAIERDWLIISGGLHSVSLTEAGRQRLKVR
Ga0209648_102024512	3300026551	Grasslands Soil	MKTASPKRRSSRRSAPKISAVEKTAIRIMRKLYEATGGQQQRWESLGNLRAIEADAAGIAYAIERNWFIISGGLRSLHAGAVH
Ga0179587_101485743	3300026557	Vadose Zone Soil	MPKSTAPKRRRSPPKISVVEKAAVRIMLKLYEATDGQPQRWESLGNLDAVKADAAGIVYAVERGWLRISGGSHSLSLTEAGRQRLK
Ga0179587_101558011	3300026557	Vadose Zone Soil	AVRQLGMVVSPKRRRRPPRISAVEKTAVRIMRKLYEATGGQPQRWESLGNLGTVASDAAGIAYAVERDWRIISGGLHSVSLTEAGRRRVKARWP
Ga0208994_10573772	3300027164	Forest Soil	MPKSTPKRRSAPKISAVEKTAVRIMRKLYEATGGQPQRWESLGNLGVVKADAAAIAYAIERDWLIISGGLHSASLTEAGRRRVKSR
Ga0208993_10379783	3300027480	Forest Soil	SLYAARLYPESLMPKSTAPKRRRSRRSPPKISAVEKTAVRIMRKFYEATGGKPQRWESLGNLGAVKADAAGIAYAIERDWLIISGGLHSVSLTEAGRRQVK
Ga0208984_10106262	3300027546	Forest Soil	MPKSTPKRRSAPKISAVEKTAVRIMRKLHEATGGRPRRWESLDNLGAGKGDAAGIAYAVERDWLIISGGLHSVSLTEDVQR
Ga0208988_10407662	3300027633	Forest Soil	MPKSTPKRRSAPKISAVEKTAVRIMRKLHEATGGRPQRWESLDNLGAGKGDAAGIAYGVERRWLRISGRAHSVSLTAPHAGPKLSS
Ga0208988_10715561	3300027633	Forest Soil	MPKSTLKSRKSRRSPPKISAVEKIAVCIMRKLYEATGGQPQQWGSLGNLGAANADAANNAYSVERDWLIVSGGRTR
Ga0208981_10087942	3300027669	Forest Soil	MPKSTPKRRSAPKISAVEKTAVRIMRKLHEATGGRPQRWESLDNLGAGNGDAAGIAYGVERRWLRISGGAHSVSLTAPHAGPKLSS
Ga0208991_10438184	3300027681	Forest Soil	PKSTAPKRRRSRRSPPKISAVEKTAVRIMRKFYEATGGKPQRWESLGNLGAVKADAAGIAYAIERDWLIISGGLHSVSLTEAGRRQVK
Ga0208989_100074724	3300027738	Forest Soil	MKTASPKRRRSRRSQPKISAVEKTTVRIMRKLFDATGGQPQRWESLGNLVAAKADAVGIAYAVEMDWLIISGGFRSLSLTEAGRRRVE
Ga0208989_100606541	3300027738	Forest Soil	MPKARGDVECRMKTASPKRRPSRRSPPKISPLEKSAVRIMRKLHEATGGQPQRWETLGNLGAVKSDAAAIAYAVERAWLLISGGLHSLSLTEDGRQRLK
Ga0209693_104412671	3300027855	Soil	KRRRSQRSPPKISALEKTAVRIMRKLYEATGGQPQRWESLDNLGAVKADAAGIAYAIERDWLIISGGLHSVSLTEAGRRRVKSR
Ga0209693_105438871	3300027855	Soil	RTKRASQIKKHRRPSPRSAPKTSAVEKTAVRISGKFYEATGGRPQRWESLGNLGVVNADAAGIAYAIERDWLVVSGGLHSVSLTEDGRRRVK
Ga0209169_101842032	3300027879	Soil	MPKSTAPKRRSPPKISAVETTAVRIMRKLYDATGGRPQRWESLDNLAAAKADAAGIAYAVERNWLIISGGLHSVSLTEAGRQRLKAR
Ga0209380_101808013	3300027889	Soil	PMPKSTTPKRRRSRRSPPKISALEKSAVRIMRKLYEATGGNPQRWESLDNLGAVASDAAGIAYAIERDWLIISGGLHSVSLTEAGRRRVKSR
Ga0209380_107787381	3300027889	Soil	KHRRPSPRSAPKTSAVEKTAVRISGKFYEATGGRPQRWESLGNLGVVNADAAGIAYAIERDWLVVSGGLHSVSLTEDGRRRVK
Ga0209068_103393901	3300027894	Watersheds	VRSIRVARLSPIAPMPKSTAPKRRRPPKISALEKAAARIMRKLYEATGGQPQRWESLDNLGVVKADATGIAYAIERDWLIISGGSLHSVSLTEAGLRRVKSR
Ga0209488_101902742	3300027903	Vadose Zone Soil	MPKSTAPKRRRSPPKISALEKTALRIMRKLYEATGGQPQRWESLDNLGAVKADAAGVAYAVERDWLIISGGFHSVSLTEAGRRRVK
Ga0209006_100997674	3300027908	Forest Soil	MPKSTAPKRRSSRRSPPKIGGLEKAAVRIMRKLYEATGGQPERWESLDNLGAVKADAAAIAYAAERDWLVISGGAHSVRLTEDGRRRVK
Ga0209526_102124101	3300028047	Forest Soil	ACSLIAPMPKSAAPKRRTSRRSPPKISAAEKTAVRIMLKLYEATGGQPQRWESLGNLGVVKSDAAAVAYTVERGWLIVEGNPPHSICLTDAGRTLVDHR
Ga0307280_102846241	3300028768	Soil	MSKSKAPKRRSSRRSPPKISALDKAAIRIMRKVYGATGGQPQRWESLGNLGAVKADAVGIAYAVEMDWLIISGGFHSVSLTEAGRRRVK
Ga0307296_104596671	3300028819	Soil	PASPKRRRKISAVEKTAVRIMRKLYEASGGQPQRWESLGNLGKVKADAAGIAYAVERDWLIISGGLHSVSLTEAGRRRLK
Ga0308309_100263957	3300028906	Soil	TPMANMPRATRTKRASQIKKHRRPSPRSAPKTSAVEKTAVRISGKFYEATGGRPQRWESLGNLGVVNADAAGIAYAIERDWLVVSGGLHSVSLTEDGRRRVK
Ga0308309_100340448	3300028906	Soil	MPKSTAPKRRSPPKISAVETTAVRIMRKVDEATGGQPQRWESLDNLAAAKADAAGIAYAVERNWLIISGGLHSVSLTEAGRQRLKAR
Ga0170834_1085550972	3300031057	Forest Soil	MPKSTAPKRRRSPPKLSALEKSALRIMRNRYAATGGKPQRWESLDNLGAVKDDAAGIAYAIERDWLIISGGSLHSVSLTEAGRRRVKSR
Ga0170820_137427511	3300031446	Forest Soil	KRRRPSPRSAPKISAVEKTAVRIVRKLYEATRGQPQRWESLGNLGVVASNAAGIAYAVERGWLIISGGLHSVSLTEAGRRRVK
Ga0170818_1019159791	3300031474	Forest Soil	MKTASPKRGSPPKISAVEKTAVRIMRKVYEATNGQPQRWESLGNLGVGKANAAAIAYAVERDWLIISGGWHSVSLTEAGRQRLRVVR
Ga0170818_1098483641	3300031474	Forest Soil	MTPPTLEIVLQGLHDLIAPMPRATLTKRASQIEKRGRPQQTTPPKGSALEKAALRIMRNLYEATGGKPQRWESLGNLGVVASDATGIAYAIESGWLTISGGLHSVSLTEDGRQRLKVR
Ga0170818_1138864241	3300031474	Forest Soil	RPPKISALEKAAVRIMRKVYGATGGQPQRWESLGNLGAAKADAGGIAYAVEREWLIISGGLHSVSLTEAGRQRLKSR
Ga0307470_107087423	3300032174	Hardwood Forest Soil	TCGYVDCRMKTASLKRRTSRRRPPKISAVEKTAIRIMRKLYEATGGQPQQWESLGNLGLVKADAAGIAYALERDWLIISGGLHSVSLTEAGRRRLK

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F079239

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences