Metagenome / Metatranscriptome Family F079171

Overview

Basic Information

• Family ID: F079171
• Family Type: Metagenome / Metatranscriptome
• Number of Sequences: 116
• Average Sequence Length: 62 residues
• Representative Sequence: MAMQKITFSADADLLDRAEQIAKAKGTTLEEEVRQWLDDFGEGRWKLPPREPRKRKARKSVKD
• Number of Associated Samples: 101
• Number of Associated Scaffolds: 116

Quality Assessment

• Transcriptomic Evidence: Yes
• Most common taxonomic group: Bacteria
• % of genes with valid RBS motifs: 73.28 %
• % of genes near scaffold ends (potentially truncated): 18.10 %
• % of genes from short scaffolds (< 2000 bps): 78.45 %
• Associated GOLD sequencing projects: 92
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.39

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Bacteria (86.207 % of family members)
• NCBI Taxonomy ID: 2
• Taxonomy: All Organisms → cellular organisms → Bacteria

Most Common Ecosystem

• GOLD Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (24.138 % of family members)
• Environment Ontology (ENVO): Unclassified (25.000 % of family members)
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline) (37.069 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Globular
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 29.67%
  β-sheet: 0.00%
  Coil/Unstructured: 70.33%

Predicted 3D Structure

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 116 Family Scaffolds
PF07517	SecA_DEAD	41.38
PF00501	AMP-binding	37.07
PF00550	PP-binding	0.86
PF01339	CheB_methylest	0.86
PF02899	Phage_int_SAM_1	0.86
PF13854	Kelch_5	0.86
PF01058	Oxidored_q6	0.86
PF07394	DUF1501	0.86
PF01928	CYTH	0.86
PF12367	PFO_beta_C	0.86

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 116 Family Scaffolds
COG0653	Preprotein translocase subunit SecA (ATPase, RNA helicase)	Intracellular trafficking, secretion, and vesicular transport [U]	41.38
COG2201	Chemotaxis response regulator CheB, contains REC and protein-glutamate methylesterase domains	Signal transduction mechanisms [T]	1.72
COG0377	NADH:ubiquinone oxidoreductase 20 kD subunit (chain B) or related Fe-S oxidoreductase	Energy production and conversion [C]	0.86
COG1740	Ni,Fe-hydrogenase I small subunit	Energy production and conversion [C]	0.86
COG1941	Coenzyme F420-reducing hydrogenase, gamma subunit	Energy production and conversion [C]	0.86
COG3260	Ni,Fe-hydrogenase III small subunit	Energy production and conversion [C]	0.86
COG4973	Site-specific recombinase XerC	Replication, recombination and repair [L]	0.86
COG4974	Site-specific recombinase XerD	Replication, recombination and repair [L]	0.86

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	87.07 %
Unclassified	root	N/A	12.93 %

Level 2

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	87.07 %
Unclassified	root	N/A	12.93 %

Level 3

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	86.21 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	0.86 %
Unclassified	root	N/A	12.93 %

Level 4

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	51.72 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.86 %
Sar	clade	All Organisms → cellular organisms → Eukaryota → Sar	0.86 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	3.45 %
Unclassified	root	N/A	12.93 %

Level 5

Name	Rank	Taxonomy	Distribution
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	17.24 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.86 %
Alveolata	clade	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata	0.86 %
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	0.86 %
Cyanobacteria/Melainabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group	0.86 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1.72 %
Unclassified	root	N/A	12.93 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	13.79 %

Level 6

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	13.79 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	17.24 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.86 %
Coriobacteriia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Coriobacteriia	0.86 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	0.86 %
Dinophyceae	class	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	0.86 %
Negativicutes	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes	1.72 %
Unclassified	root	N/A	12.93 %

Level 7

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	13.79 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	17.24 %
Coriobacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Coriobacteriia → Coriobacteriales	0.86 %
Nostocales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales	0.86 %
Sphingobacteriia	class	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Sphingobacteriia	0.86 %
Suessiales	order	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales	0.86 %
Unclassified	root	N/A	12.93 %
Veillonellales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Veillonellales	1.72 %

Level 8

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	13.79 %
Candidatus Koribacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	12.07 %
Candidatus Sulfotelmatobacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter	0.86 %
Coriobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Coriobacteriia → Coriobacteriales → Coriobacteriaceae	0.86 %
Sphingobacteriales	order	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Sphingobacteriia → Sphingobacteriales	0.86 %
Symbiodiniaceae	family	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae	0.86 %
Tolypothrichaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Tolypothrichaceae	0.86 %
Unclassified	root	N/A	12.93 %
Veillonellaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Veillonellales → Veillonellaceae	1.72 %

Level 9

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	13.79 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	6.03 %
Candidatus Sulfotelmatobacter kueseliae	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter kueseliae	0.86 %
Collinsella	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Coriobacteriia → Coriobacteriales → Coriobacteriaceae → Collinsella	0.86 %
Megasphaera	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Veillonellales → Veillonellaceae → Megasphaera	1.72 %
Symbiodinium	genus	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium	0.86 %
Tolypothrix	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Tolypothrichaceae → Tolypothrix	0.86 %
Unclassified	root	N/A	12.93 %
unclassified Sphingobacteriales	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Sphingobacteriia → Sphingobacteriales → unclassified Sphingobacteriales	0.86 %

Level 10

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	13.79 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	6.03 %
Candidatus Sulfotelmatobacter kueseliae	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter kueseliae	0.86 %
Collinsella aerofaciens	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Coriobacteriia → Coriobacteriales → Coriobacteriaceae → Collinsella → Collinsella aerofaciens	0.86 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Veillonellales → Veillonellaceae → Megasphaera → environmental samples	1.72 %
Sphingobacteriales bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Sphingobacteriia → Sphingobacteriales → unclassified Sphingobacteriales → Sphingobacteriales bacterium	0.86 %
Symbiodinium microadriaticum	species	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → Symbiodinium microadriaticum	0.86 %
Tolypothrix campylonemoides	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Tolypothrichaceae → Tolypothrix → Tolypothrix campylonemoides	0.86 %
Unclassified	root	N/A	12.93 %

Level 11

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	13.79 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	6.03 %
Candidatus Sulfotelmatobacter kueseliae	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter kueseliae	0.86 %
Collinsella aerofaciens ATCC 25986	strain	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Coriobacteriia → Coriobacteriales → Coriobacteriaceae → Collinsella → Collinsella aerofaciens → Collinsella aerofaciens ATCC 25986	0.86 %
Megasphaera elsdenii CAG:570	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Veillonellales → Veillonellaceae → Megasphaera → environmental samples → Megasphaera elsdenii CAG:570	1.72 %
Sphingobacteriales bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Sphingobacteriia → Sphingobacteriales → unclassified Sphingobacteriales → Sphingobacteriales bacterium	0.86 %
Symbiodinium microadriaticum	species	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → Symbiodinium microadriaticum	0.86 %
Tolypothrix campylonemoides VB511288	strain	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Tolypothrichaceae → Tolypothrix → Tolypothrix campylonemoides → Tolypothrix campylonemoides VB511288	0.86 %
Unclassified	root	N/A	12.93 %

Associated Scaffolds

Scaffold	Taxonomy	Length
3300000567|JGI12270J11330_10003299	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	11622
3300001131|JGI12631J13338_1019676	All Organisms → cellular organisms → Bacteria → Acidobacteria	730
3300001593|JGI12635J15846_10009339	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	8329
3300001593|JGI12635J15846_10546544	All Organisms → cellular organisms → Bacteria	678
3300001593|JGI12635J15846_10546868	All Organisms → cellular organisms → Bacteria	678
3300003505|JGIcombinedJ51221_10337941	All Organisms → cellular organisms → Bacteria	612
3300004152|Ga0062386_101144813	All Organisms → cellular organisms → Bacteria	646
3300005176|Ga0066679_10534519	All Organisms → cellular organisms → Bacteria	764
3300005440|Ga0070705_101779582	All Organisms → cellular organisms → Bacteria	522
3300005445|Ga0070708_100037269	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	4241

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Environmental	Environmental	98.28%
Host-Associated	Host-Associated	1.72%

Class

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	19.83%
Plants	Host-Associated → Plants	1.72%
Terrestrial	Environmental → Terrestrial	78.45%

Category

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	17.24%
Peat	Environmental → Terrestrial → Peat	2.59%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.72%
Sediment	Environmental → Aquatic → Sediment	2.59%
Soil	Environmental → Terrestrial → Soil	75.86%

Type

Habitat	Taxonomy	Distribution
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.86%
Loam	Environmental → Terrestrial → Soil → Loam	20.69%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.72%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	49.14%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.59%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	2.59%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	16.38%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	6.03%

Subtype

Habitat	Taxonomy	Distribution
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.90%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	9.48%
Contaminated	Environmental → Aquatic → Freshwater → Groundwater → Contaminated	0.86%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	13.79%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	13.79%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	4.31%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	1.72%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	1.72%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	1.72%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	29.31%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	5.17%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	4.31%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.59%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	2.59%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.72%

Habitat

Habitat	Taxonomy	Distribution
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	1.72%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	2.59%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	1.72%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.86%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	6.90%
Fen	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen	0.86%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	12.93%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	1.72%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.72%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater → Contaminated → Groundwater	0.86%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	6.03%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	1.72%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	6.03%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	5.17%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	4.31%
Prmafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Prmafrost Soil	0.86%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	1.72%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	7.76%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.59%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	1.72%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.86%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.86%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	0.86%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.86%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	24.14%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	2.59%

Associated Samples

Taxon OID	Sample Name	Habitat Type
3300000567	Peat soil microbial communities from Weissenstadt, Germany - SII-2010	Environmental
3300001131	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_O1	Environmental
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental
3300003505	Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)	Environmental
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental
3300005176	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128	Environmental
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental
3300005446	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135	Environmental
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12270J11330_1000329911	3300000567	Peatlands Soil	MAMKKITFSADDDLLDRAEQIARAKGTTLEEEVRQWLNDFGEGRWKLPPREPKRRKVRKSAKG*
JGI12631J13338_10196762	3300001131	Forest Soil	MAMKKITFRADDELLDRAEQVARAKGTTLEEEVGQWLNDFGKGRWKLPPRESNRR*
JGI12635J15846_100093394	3300001593	Forest Soil	MQKITFSADADLLDRAEQIAKAKGTTLEEEVRQRLDDFGEGRWKLPPGEPRKRKARKSVKD*
JGI12635J15846_105465442	3300001593	Forest Soil	MVMKKITFSADADLLELADQIAKEKGTTLENEVRQWLNDLGAGRWKPTPGKPKKVKTLRSPKR*
JGI12635J15846_105468681	3300001593	Forest Soil	MAMQKITFSADADLLDRAEQIAKAKGTTLEEEVRLWLDAFGERRWKRPLREQRTRKARKSVKD*
JGIcombinedJ51221_103379412	3300003505	Forest Soil	MAMQKIYFSADADLLDRAEQIAKAKGTTLEEEVRQWLDDFGEGRGKLPPREPRKRK
Ga0062386_1011448132	3300004152	Bog Forest Soil	MAMKKVTFRADAEKLELARRIAEAKGTTLEEEVRKWLKDFGDGKWKLPNESGKARKSAKD
Ga0066679_105345192	3300005176	Soil	MAMQKITFSADADLLDRAEQIAKAKGTTLEEEVRQWLNDFGEGRWKLPPREPRKRKARKSVKD*
Ga0070705_1017795822	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	MKTRKHADLLWGAKAMAMKKITFNADARQLDLARRIAEDKGTTLEEEVRQWLNDLGEGRWKLTPKEPKAREGRKSVK*
Ga0070708_1000372692	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MAMKKITFNADARQLDLARRIAEDKGTTLEEEVRQWLNDLGEGRWKLTPKEPKARKGRKSVK*
Ga0070708_1019940372	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MAMKKITFSADADLVDRAEQIAKAKGTTFEEEVRRWLDDFGQGRWKLPSREPKKGQASKSAKK*
Ga0066686_103864892	3300005446	Soil	MKTRKDADLLWGAKDHGDEEITFNADEGQPDLAKRIAEEKGTTLEEEVRQWLKDFGEGRWKLTPKEPKTLKGGKSAK*
Ga0070699_1007766481	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	MAMKKITFNADAGQLDLARRIAEDKGATLEEEVRQWLNDLGEGRWKLTPKEPKTRKGRKSVK*
Ga0070697_1003164882	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MAMKKITFNADEGPLDLAKRIAEEKGTTLEEEVRQRLKDFGEGRWKLTPKEPKILKGGKSAK*
Ga0070697_1010670831	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MAMKKITFNADARQLDLARRIAEDKGTTLEEEVRQWLNDLGEGRWKLTPKEPKAREGRKSVK*
Ga0066692_102105722	3300005555	Soil	MAMQKITFSADADLLDRAEQIAKAKGTTLEEEVRQWLDDFGEGRWKLPPREPRKRKARKSVKD*
Ga0070763_104086182	3300005610	Soil	MAMKKITFSADDDLLARAEQIARAKGATLRRKFDRGSDFGEGGWKLPPREPKRAEEEEKEGR*
Ga0097691_10131442	3300006055	Arctic Peat Soil	MVMKKITFNADADQLELAKRIAEGKGTTLEEEVRQWLKDLGEGRWKPTPQEPKNRKSRKSMED*
Ga0075018_100613253	3300006172	Watersheds	MSISGTNAMAMKKLTFRADADKLELARLIAESKGTTLEEEVRQWLKDYGERRWKPTPGKPEKKQIRKSPKE*
Ga0070716_1015251072	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	MKTRKDADLLWGANTMAMKKITFNADAKQLDLARRIAEDKGTTLQEEVRQWLNDLGEGRWKLTPKEPKTRKGRKSVK*
Ga0075014_1002641752	3300006174	Watersheds	MAMQKITFSADADLLDRAEQIAKEKGTTLEEEVRQWLDDFGQGRWNSRRESRRKERSRESAKD*
Ga0099791_102656202	3300007255	Vadose Zone Soil	MAMQKITFSADADLLDRAEQIAKAKGTSLEEEVRQWLDDFGEGRWKLQAREPRKRKTRKPVKD*
Ga0066793_103929822	3300009029	Prmafrost Soil	MAMIEVTFSADGDLLDRAEQIAKEKGTTLEEEIRQWLDDFGAGRWKLPPKDKKKEEGAQIP*
Ga0099829_101310554	3300009038	Vadose Zone Soil	MVMKKITFNADAGQLELAKRIAEEKGTTLEEEVRQWLKDFGEGRWKLTPQEPKKSKTANRPRTGI*
Ga0099829_103690182	3300009038	Vadose Zone Soil	MAMQKITFRADADLLDRAEQIAKAKGTTLEAEARQWLDDFGEGRWKIPPREPEKRKARKSVKD*
Ga0099828_105245171	3300009089	Vadose Zone Soil	MAMPKITFRADADLLDRAEQIAKAKGTTLEAEARQWLDDFGEGRWKIPPREPEKRKARKSVKD*
Ga0099827_113801742	3300009090	Vadose Zone Soil	MAMQKITFSADADLLDRAEQIAKAKGTTLEEEVRQWLDDFGEGRWKLPQGEPRKRKARKSVKD*
Ga0116225_10593882	3300009524	Peatlands Soil	VALKKITFNADADLLDRAEQIAKAKGTTLEEEVRQWLNDFGEGRWKLPPRELKEGQTRKSAKQ*
Ga0116138_10484452	3300009552	Peatland	MAIKEITFSADDDLLNRAEEIARTKGTTLEQEVRQWLSDFGEGRWKLPPREPKRRKVRKSKR*
Ga0116105_10245102	3300009624	Peatland	MAMKEITFSAEDDLLDRAEQIARAKGTTLEQEVRQWLSDFGEGRWTLPPREPKKRKGP*
Ga0116125_10984202	3300009628	Peatland	IEGNTMAMKEITFSAEDDLLDRAEQIARAKGTTLEQEVRQWLSDFGEGRWTLPPREPKKRKGP*
Ga0116131_10711322	3300009760	Peatland	MVMKKITFNADADLLELAKRIAEEKGTTLEEEVRKWLKDLGEGRWKPTPQEPKNRKRRKS
Ga0116223_104437522	3300009839	Peatlands Soil	VALKKITFNADADLLDRAEQIAKAKGTTLEEEVRQWLNDFGEGRWKLPPRELKEGQTRKS
Ga0099796_104642571	3300010159	Vadose Zone Soil	MVMKKITFNADAGQLELARRIAEDKGTTFEVEVRQWLKDFGEGRWKLPPQEPRTRK
Ga0074046_108171561	3300010339	Bog Forest Soil	MVMKKITFNADADLLDRAEQIAKAKGTTLEKEVRQWLDDLGEGRWKPTPLEPRKRKARKFAKD*
Ga0074044_101470272	3300010343	Bog Forest Soil	MAMTEITFSADADLLDRAEQIAKEKGTTLENEIRHWLDDFGAGRWKLPPKDKSKEEGAQLP*
Ga0136449_1034049902	3300010379	Peatlands Soil	DRWGKLGRADLNVEGNKMAMKKIAFSADDDLLDRAEQIARVKGTTLEEEVREWLNDFGERRWKLPPREPKRRKVRKSAKG*
Ga0137382_106373041	3300012200	Vadose Zone Soil	MAMKKITFNADAGQLDQARRIAEDKGTTLEAEVRQWLKDLGEGRWKLIPKEPKTHKGRKSVK*
Ga0137363_107766921	3300012202	Vadose Zone Soil	MKKITFNADAGQLELARRIAEDKGTTFEEEVRQWLKDFGEGRWKLPPQEPRTRKGRKSAK
Ga0137363_110125151	3300012202	Vadose Zone Soil	AVAMKRITFNADARQLDLARRIAEDKGTTLEEEVRQWLNDLGEGRWKLIPKEPKTRKGRKSVK*
Ga0137362_100218183	3300012205	Vadose Zone Soil	MKRITFNADARQLDLARRIAEDKGTTLEEEVRQWLNDLGEGRWKLTPKEPKTRKGRKSVK
Ga0137362_107186031	3300012205	Vadose Zone Soil	MAMQKITLSADADLLDRAEQIAKAKGTTLEEEVRQWLDDFGEGRWKLPPREPRKRKARKSVKD*
Ga0137387_109066992	3300012349	Vadose Zone Soil	MAMKKITFNADEGQLDLAKRIAEEKGTTLEEEVRQCLKDFGEGRWKLTPKEPKTLKGGKSAK*
Ga0137361_109086493	3300012362	Vadose Zone Soil	FSADADLLDWAEQIAKAKGTTLEEEVRQWLDDFGAGRWKLPPQEPRKRKD*
Ga0137358_105491452	3300012582	Vadose Zone Soil	MKKITFNADAGQLDQARRIAEDKGTTLEAEVRQWLKDLGEGRWKLIPKEPKTRKGRKSVK
Ga0137395_105458211	3300012917	Vadose Zone Soil	MAMQKITFSADADLLDRAEQIAKAKGTTLEEEVRQGLDDFGEGRWTSPQGEQRKRKARKSVK
Ga0137395_110524592	3300012917	Vadose Zone Soil	MAMKKITFNADAGQLDRARRIAEDKGTTLEEEVRQWLNDLGEGRWKLTPKEPKTRKGRKSVK*
Ga0137394_106412452	3300012922	Vadose Zone Soil	MKKITFNADAGQLELARRIAEDKGTTFEEEVRQWLKDFREGRWKLPPQEPRTRKGRKSAK
Ga0137359_100941792	3300012923	Vadose Zone Soil	MVMKKITFNADAGQLELARRIAEDKGTTFEEEVRQWLKDFGEGRWKFPPQEPRTRKGRKSAK*
Ga0137359_100996602	3300012923	Vadose Zone Soil	MAMKKITFNADAGQLDQARRIAEDKGTTLEAEVRQWLKDLGEGRWKLIPKEPKTRKGRKSVK*
Ga0137419_118463781	3300012925	Vadose Zone Soil	MAMQKITFSAEADLLDRAEQIAKAKGATLEQEVRQWLDDFGEGRWKLQAREPRKRKTRKPVKD*
Ga0137416_117778921	3300012927	Vadose Zone Soil	MGKTRNCADLDLGRNTMAMQTITFSADADLLDRAEQIAKAKGTTLEEEVRQWLDDFGVGRWKLPPREPRKRKARKSVKD*
Ga0137407_112846882	3300012930	Vadose Zone Soil	MAMKKITFNADARQLDLARRIAEDKGTTLEEEVRQWLNDLGEGRWKLIPKEPKTRKGRKSVK*
Ga0181524_101343432	3300014155	Bog	MAMQKIRFSADEELLDRAEQIAKAKGTTLEEEVRQWLDDYGSGKWKLPPQQTMKRKSRKSTKC*
Ga0181524_102683551	3300014155	Bog	LDRAEQIAKAKGTTLEEEVRQWLDDYGSGKWKLPPQEPKKRKSRKSTKG*
Ga0181521_100689393	3300014158	Bog	MAMIEVTFSADADLLGRAEQIAKEKGTTLEEEIRRWLDDFGAGRWKLPPKDKKKEEGAQIP*
Ga0182011_110531071	3300014496	Fen	MAMQKITFSADAELLDRAEQIAKEKGTTLEEEVRQWLDDFGSGKWKLPPQETKKIKSRKSTKG*
Ga0137418_103916782	3300015241	Vadose Zone Soil	MAMQKITFRAEADLLDRAEQIAKAKGATLEQEVRQWLDDFGEGRWKLPPRESRKRKVRKSVK
Ga0187818_100974282	3300017823	Freshwater Sediment	MAMKKITFRADAEELELARRIAEAKGTAREEEVRKWLKDYGDGKWKLPKESEKTRKSTKD
Ga0187818_101049432	3300017823	Freshwater Sediment	MVMKKITFRADPEKLELARRIAEAKGTTLEEEVRQWLKDLGEGRWKPTPGKPKKRKSRKSARD
Ga0187781_105443962	3300017972	Tropical Peatland	MAMKKITFRADAEKLERAELIAKSKGTTLEEEVRQWLADFGEGRWKLPQRRKKRGEISEE
Ga0187876_11641501	3300018003	Peatland	KLGTAPILNWDISMAMQKITFSADAELLELAEQIAKEEGITLEEEVRQWLKDLGEGRWKPTPGEPKN
Ga0187865_100141116	3300018004	Peatland	MVMKKITFNADADLLELAKRIAEEKGTTLEEEVRKWLKDLGEGRWKPTPQEPKNRKRRKSTED
Ga0187864_102110241	3300018022	Peatland	MAMIEVTFSADADLLDRAEQIAKEKGTTLEEEIRQWLDDFGAGRWKLPPKDKKKEEGAQI
Ga0187857_104418161	3300018026	Peatland	MAIKKISFSADDDLLDRAEQIARAKGTTLEEEVRQWLNDFGEGRWKLPPREPKRRKVRKSAKG
Ga0187862_105790852	3300018040	Peatland	MAMQKIRFSADEELLDRAEQIAKAKGTTLEEEVRQWLDDYGSGKWKLPPQQTMKRKSRKSTKC
Ga0187871_108186401	3300018042	Peatland	MVMKKITFSADESLFDRADQIARAKGTTLEEEVRQWLNDLGSGKWKPTGPIKKRRKSKAG
Ga0187890_105101762	3300018044	Peatland	RNCADLNVEDYQMAIKEITFSADDDLLNRAEEIARTKGTTLEQEVRQWLSDFGEGRWTLPPREPKKRKGP
Ga0193751_100048814	3300019888	Soil	MAMQKITFSADSDLLDRAEQIAKAKGTTLEEEVRQWLDDFGEGRWKLPQGEPRKRKARKSVKD
Ga0179592_100368342	3300020199	Vadose Zone Soil	MAMQKITFSADADLLDRAEQIAKAKGTTLEEEVRQWLNDFGEGRWKLPPREPRKRKARKSVKD
Ga0210407_100042277	3300020579	Soil	MQKITFSADTDLLDRAEQIAKAKGTTLEEEVRQWLDDFGEGRWKLPPREPRKRKARKAVK
Ga0210403_103636352	3300020580	Soil	MAMQKITFSADTDLLDRAEQIAKAKGTTLEEEVRQWLDDFGEGRWKLPPREPRKRKARKAVKD
Ga0210400_102160792	3300021170	Soil	TFSADADLLDRAEQIAKAKGTTLEEEMRQWLDDFGEGRWKLQPREPRKRKTRKPVKD
Ga0242660_10646552	3300022531	Soil	TFSADTDLLDRAEQIAKAKGTTLEEEVRQWLDDFGEGRWKLPPREPRKRKARKAVKD
Ga0224558_10328362	3300023090	Soil	MAMKKITFSADDDLLDRAEQIARAKGTTLEEEVRQWLNDFGEGRWKLPPREPKRRKVRKSAKG
Ga0208935_10350532	3300025414	Peatland	MAMKEITFSAEDDLLDRAEQIARAKGTTLEQEVRQWLSDFGEGRWTLPPREPKKRKGP
Ga0208039_10710962	3300025454	Peatland	MAIKEITFSADDDLLNRAEEIARTKGTTLEQEVRQWLSDFGEGRWKLPPREPKRRKVRKSKR
Ga0208587_10862611	3300025484	Arctic Peat Soil	MVMKKITFNADADQLELAKRIAEGKGTTLEEEVRQWLKDLGEGRWKPTPQEPKNRKSRKSMED
Ga0207665_105193762	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	MKTRKDADLLWGANTMAMKKITFNADAKQLDLARRIAEDKGTTLQEEVRQWLNDLGEGRWKLTPKEPKTRKGRKSVK
Ga0257176_10077522	3300026361	Soil	MAMPKITFRADADLLDRAEQIAKAKGTTLEAEARQWLDDFGEGRWKIPPREPEKRKARKSVKD
Ga0257169_10042382	3300026469	Soil	MAMQKITFRADADLLDRAEQIAKAKGTTLEAEARQWLDDFGEGRWKIPPREPEKRKARKSVKD
Ga0257172_10020172	3300026482	Soil	MQRMTFSADADLLDRAEQIAKAKGTTLEEEVRQWLDDFGEGRWKLPPREPRKRKARKSVK
Ga0257161_10064792	3300026508	Soil	MQKITFSADADLLDRAEQMAKAKGPTLEEEVRQWLEDFGEGGWKLPPREPRKRKARKSVK
Ga0209648_100693962	3300026551	Grasslands Soil	MQKITFRADADLLDRAEQIAKAKGTTVEEEVRQWLDDFGEGRWKLPPRAPRKRKARKSVK
Ga0209648_100937162	3300026551	Grasslands Soil	MAMQKITFRANADLLDRAEQIAKAKGTTLEAEARQWLDDFGEGRGKIPPREPGKRKARKSVKD
Ga0209529_10301362	3300027334	Forest Soil	MAMKKITFRADDELLDRAEQVARAKGTTLEEEVGQWLNDFGKGRWKLPPRESNRR
Ga0209332_10740091	3300027439	Forest Soil	MAMQKITFSADADLLDRAEQIAKAKGTTLEEEVRQWLDDFGDGRWKLPPREPRKRKARKSEKD
Ga0209734_10057701	3300027535	Forest Soil	MQKIRFSADADLLGRAGQIAKAKGTTLEEEVRQWLDHFGEGRWKLPPGEPRKR
Ga0209735_11356212	3300027562	Forest Soil	MPMQKIRFSADADLLDRAEQIAKAKGTTLEEEVRLWLDAFGERRWKLPLREQRTRKARKSVKD
Ga0209220_11410251	3300027587	Forest Soil	MQKITFSADADLLDRAEQIAKAKGTTLEEEVRQRLDDFGEGRWKLPPGEPRKRKARKSVK
Ga0209733_10782811	3300027591	Forest Soil	MAMQKITFSADADLLDRAEQIAKAKGTTLEEEVQQWLDDFGEGRWKLPPREPRKRKARKSAKD
Ga0209625_10036452	3300027635	Forest Soil	MRKITFSADADLLDRAKQMAEAKGTTLEEEVRQWLDDFGEGRWKLPPREPRKRKSRKSGK
Ga0209117_10271972	3300027645	Forest Soil	MAMQRITFSADADLLDRAEQIAKAKGTTLEEEVRQCLDDFGEGRWKLPPREPRKRKARKSVKD
Ga0209117_10529882	3300027645	Forest Soil	MAMQKITFSADAELLDRAEEIAKAKGTTLEEEARKWLNDFGEGRWKLPPREPKKRKARKSAKD
Ga0209118_10299421	3300027674	Forest Soil	ADLLDRPEQIAKAKGTTLEEEVRQWLDHFGEGRWKLPPGEPRKRKARKSVKD
Ga0209726_100049789	3300027815	Groundwater	MVMKKITFSADADKLERARRIAEAKGTTLEEEVRQWLKDLGEGRWKPTPGKPKARKGRKSAKD
Ga0209180_101077483	3300027846	Vadose Zone Soil	MVMKKITFNADAGQLELAKRIAEEKGTTLEEEVRQWLKDFGEGRWKLTPQEPKKSKTANRPRTGI
Ga0209517_100789232	3300027854	Peatlands Soil	VALKKITFNADADLLDRAEQIAKAKGTTLEEEVRQWLNDFGEGRWKLPPRELKEGQTRKSAKQ
Ga0209590_110397982	3300027882	Vadose Zone Soil	GANTMAMKKITFSADAGQLDLARRIAEDKGTTLEEEVRQWLNDLGEGRWKLTPKEPKTRKGRKAVK
Ga0209068_105467992	3300027894	Watersheds	MAMQKITFSADAELLDRAKQIAKEKGTTLEEEVRRWLNDFGEGRWKLPPREPKKRKVRKSAKG
Ga0137415_106254361	3300028536	Vadose Zone Soil	MAMQKITFSADADLVDRAEQIAKAKGTTLEEEVRQWLDDFGEGKWKLPPRESRKRKAPKSVKD
Ga0137415_108982402	3300028536	Vadose Zone Soil	MVMKKITFNADAGQLELARRIAEDKGTTFEEEVRQWLKDFGEGRWKLPPQEPRTRKGRKSAK
Ga0073994_122543122	3300030991	Soil	MQKITFSADADLLDRAEQIAKAKGTTLEEEVRQWLDHFGEGRWKLPPGEPRKRKARKSVK
Ga0265330_100113652	3300031235	Rhizosphere	MAMQKITFSADEALLDRAEQIAKEKGTTLEEEVRQWLNDFGEGRWKFTPQEPKKRKVHKSTKD
Ga0265329_103149992	3300031242	Rhizosphere	MQKITFSADEALLDRAEQIAKEKGTTLEEEVRQWLNDFGEGRWKFTPQEPKKRKVHKSTK
Ga0307474_100946982	3300031718	Hardwood Forest Soil	MQKITFSADADLLDRAEQIAKAKGTTLEEEVRQWLDDFGEGRWMLPAREPRKRKTRKPVK
Ga0307469_102962052	3300031720	Hardwood Forest Soil	MAMKKITFNADARQLDLARRIAEDKGTTLEEEVRQWLNDLGEGRWKLTPKEPKTRKGRKSVK
Ga0307469_112024011	3300031720	Hardwood Forest Soil	MAMQKITFSADADLLDRAEQIAKAKGTTLEEEVRQWLDDFGEGRWKFPPREPIKRKARKSVKD
Ga0307475_107373352	3300031754	Hardwood Forest Soil	MAMQKITFSADSDLLDRAEQIAKAKGTTLEEEVRQWLDDFGEGRWKLPPREPRKRKARKAVKD
Ga0307473_111614381	3300031820	Hardwood Forest Soil	MAMQKITFSADADLLDRAEQIAKVKGTTLEEEARQWLDGFGDGRWKLPPREPRKGRPAKP
Ga0307478_117000682	3300031823	Hardwood Forest Soil	MAMKEITFSADDDLLDRAEQIARAKGTTLEDEVRQWLTDYGEGKWKLPPRER
Ga0307472_1024687932	3300032205	Hardwood Forest Soil	MAMKKITFSADADLLDRAEQIAKAKGTTFEEEIRRWLDDFGQGRWKLPSREPKKGQASKSAKK
Ga0335070_103094592	3300032829	Soil	MAMKKITFSADADKIGLARRIAEAKGTTLEEEVRQWLKDLGEGRWKPTLDDAKKERDQKTAWKFK
Ga0335081_100935482	3300032892	Soil	MVMKKITFSADPEKLELARRIAESKGTTLEEEVRQWLKDYGAGRWKSPKQPERDEQGPKSRKK
Ga0326728_1000098382	3300033402	Peat Soil	MAMQKITFSADEDALDRAEQIAKEKGTTLEEEVRQWLDDFGARRWKLPPREPGKRKSRKSTKSRSPRR
Ga0326726_102463472	3300033433	Peat Soil	MVMKKITFSADADKLELAKRIAEANGTTLEEEVRQWLKDLGEGRWKPEPGKPKTRKGRKSAKD