Metagenome / Metatranscriptome Family F079170

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F079170
Family Type	Metagenome / Metatranscriptome
Number of Sequences	116
Average Sequence Length	47 residues
Representative Sequence	MTDLLSLISHHGYLFLALVCFAEAVGLPLPAALAILTAGAVAAYGGL
Number of Associated Samples	106
Number of Associated Scaffolds	116

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	25.86 %
% of genes near scaffold ends (potentially truncated)	100.00 %
% of genes from short scaffolds (< 2000 bps)	92.24 %
Associated GOLD sequencing projects	101
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.41

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (74.138 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland (12.931 % of family members)
Environment Ontology (ENVO)	Unclassified (37.069 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (44.828 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 53.33% β-sheet: 0.00% Coil/Unstructured: 46.67%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.41
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.41
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 116 Family Scaffolds
PF01042	Ribonuc_L-PSP	37.93
PF00348	polyprenyl_synt	28.45
PF00069	Pkinase	2.59
PF02781	G6PD_C	1.72
PF14827	dCache_3	1.72
PF07244	POTRA	0.86
PF00730	HhH-GPD	0.86
PF13601	HTH_34	0.86
PF04461	DUF520	0.86
PF07690	MFS_1	0.86
PF00135	COesterase	0.86
PF01435	Peptidase_M48	0.86
PF14559	TPR_19	0.86
PF01026	TatD_DNase	0.86
PF00180	Iso_dh	0.86

COG ID	Name	Functional Category	% Frequency in 116 Family Scaffolds
COG0251	Enamine deaminase RidA/Endoribonuclease Rid7C, YjgF/YER057c/UK114 family	Defense mechanisms [V]	37.93
COG0142	Geranylgeranyl pyrophosphate synthase	Coenzyme transport and metabolism [H]	28.45
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	10.34
COG0364	Glucose-6-phosphate 1-dehydrogenase	Carbohydrate transport and metabolism [G]	1.72
COG0122	3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase	Replication, recombination and repair [L]	0.86
COG0177	Endonuclease III	Replication, recombination and repair [L]	0.86
COG1059	Thermostable 8-oxoguanine DNA glycosylase	Replication, recombination and repair [L]	0.86
COG1194	Adenine-specific DNA glycosylase, acts on AG and A-oxoG pairs	Replication, recombination and repair [L]	0.86
COG1666	Cyclic di-GMP-binding protein YajQ, UPF0234 family	Signal transduction mechanisms [T]	0.86
COG2231	3-Methyladenine DNA glycosylase, HhH-GPD/Endo3 superfamily	Replication, recombination and repair [L]	0.86
COG2272	Carboxylesterase type B	Lipid transport and metabolism [I]	0.86

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	74.14 %
Unclassified	root	N/A	25.86 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	74.14 %
Unclassified	root	N/A	25.86 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	74.14 %
Unclassified	root	N/A	25.86 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	51.72 %
Unclassified	root	N/A	25.86 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.59 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	25.86 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	24.14 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	1.72 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.86 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	25.86 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	21.55 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1.72 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.86 %
Nevskiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	25.86 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	21.55 %
Steroidobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae	0.86 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	0.86 %
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	0.86 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	25.86 %
Candidatus Koribacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	7.76 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.86 %
Steroidobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter	0.86 %
Cystobacterineae	suborder	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae	0.86 %
Acidobacterium	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium	0.86 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	25.86 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	7.76 %
Steroidobacter cummioxidans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter cummioxidans	0.86 %
Anaeromyxobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Anaeromyxobacteraceae	0.86 %
Acidobacterium ailaaui	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → Acidobacterium ailaaui	0.86 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.86 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	25.86 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	7.76 %
Anaeromyxobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Anaeromyxobacteraceae → Anaeromyxobacter	0.86 %
Steroidobacter cummioxidans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter cummioxidans	0.86 %
Acidobacterium ailaaui	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → Acidobacterium ailaaui	0.86 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.86 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.86 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000955\|JGI1027J12803_109306154	All Organisms → cellular organisms → Bacteria	672	Open in IMG/M
3300001100\|JGI12703J13194_102790	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	862	Open in IMG/M
3300002907\|JGI25613J43889_10013385	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	2281	Open in IMG/M
3300004080\|Ga0062385_10666353	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	666	Open in IMG/M
3300004091\|Ga0062387_100358854	All Organisms → cellular organisms → Bacteria	965	Open in IMG/M
3300004092\|Ga0062389_103494409	All Organisms → cellular organisms → Bacteria	589	Open in IMG/M
3300004152\|Ga0062386_100673803	All Organisms → cellular organisms → Bacteria → Acidobacteria	848	Open in IMG/M
3300005177\|Ga0066690_10803284	All Organisms → cellular organisms → Bacteria → Acidobacteria	611	Open in IMG/M
3300005467\|Ga0070706_101324660	All Organisms → cellular organisms → Bacteria	660	Open in IMG/M
3300005538\|Ga0070731_11085166	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	529	Open in IMG/M
3300006046\|Ga0066652_100771653	All Organisms → cellular organisms → Bacteria	918	Open in IMG/M
3300006050\|Ga0075028_100056837	All Organisms → cellular organisms → Bacteria	1897	Open in IMG/M
3300006059\|Ga0075017_100318802	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	1152	Open in IMG/M
3300006102\|Ga0075015_100176306	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	1126	Open in IMG/M
3300006162\|Ga0075030_101013205	All Organisms → cellular organisms → Bacteria	654	Open in IMG/M
3300006172\|Ga0075018_10071745	All Organisms → cellular organisms → Bacteria	1486	Open in IMG/M
3300006174\|Ga0075014_100367593	All Organisms → cellular organisms → Bacteria	776	Open in IMG/M
3300006176\|Ga0070765_100064866	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → Acidobacterium ailaaui	3039	Open in IMG/M
3300007265\|Ga0099794_10551246	All Organisms → cellular organisms → Bacteria	609	Open in IMG/M
3300007265\|Ga0099794_10586765	All Organisms → cellular organisms → Bacteria → Acidobacteria	590	Open in IMG/M
3300009012\|Ga0066710_101763434	All Organisms → cellular organisms → Bacteria → Acidobacteria	937	Open in IMG/M
3300009038\|Ga0099829_10563734	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	946	Open in IMG/M
3300009523\|Ga0116221_1287275	Not Available	711	Open in IMG/M
3300009525\|Ga0116220_10614252	Not Available	501	Open in IMG/M
3300009624\|Ga0116105_1021761	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1351	Open in IMG/M
3300009628\|Ga0116125_1120253	All Organisms → cellular organisms → Bacteria → Acidobacteria	713	Open in IMG/M
3300009635\|Ga0116117_1077626	All Organisms → cellular organisms → Bacteria	823	Open in IMG/M
3300009636\|Ga0116112_1062564	Not Available	1082	Open in IMG/M
3300009643\|Ga0116110_1192007	All Organisms → cellular organisms → Bacteria	665	Open in IMG/M
3300009672\|Ga0116215_1116033	All Organisms → cellular organisms → Bacteria	1198	Open in IMG/M
3300009762\|Ga0116130_1060405	All Organisms → cellular organisms → Bacteria	1194	Open in IMG/M
3300010339\|Ga0074046_10077516	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2163	Open in IMG/M
3300010379\|Ga0136449_100471584	All Organisms → cellular organisms → Bacteria	2193	Open in IMG/M
3300010379\|Ga0136449_100825657	All Organisms → cellular organisms → Bacteria	1526	Open in IMG/M
3300011271\|Ga0137393_10573785	All Organisms → cellular organisms → Bacteria → Acidobacteria	967	Open in IMG/M
3300012189\|Ga0137388_11204375	Not Available	695	Open in IMG/M
3300012200\|Ga0137382_10760013	Not Available	696	Open in IMG/M
3300012201\|Ga0137365_11357314	All Organisms → cellular organisms → Bacteria	502	Open in IMG/M
3300012925\|Ga0137419_10537719	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	932	Open in IMG/M
3300012929\|Ga0137404_10157911	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1892	Open in IMG/M
3300014155\|Ga0181524_10206453	All Organisms → cellular organisms → Bacteria → Acidobacteria	957	Open in IMG/M
3300014200\|Ga0181526_10829009	Not Available	582	Open in IMG/M
3300014491\|Ga0182014_10203784	All Organisms → cellular organisms → Bacteria → Acidobacteria	1067	Open in IMG/M
3300014491\|Ga0182014_10509393	Not Available	589	Open in IMG/M
3300014494\|Ga0182017_10941077	All Organisms → cellular organisms → Bacteria	519	Open in IMG/M
3300014495\|Ga0182015_10701853	Not Available	638	Open in IMG/M
3300014838\|Ga0182030_10086605	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	4462	Open in IMG/M
3300014838\|Ga0182030_10871821	Not Available	811	Open in IMG/M
3300017925\|Ga0187856_1164495	All Organisms → cellular organisms → Bacteria → Acidobacteria	827	Open in IMG/M
3300017935\|Ga0187848_10377644	All Organisms → cellular organisms → Bacteria → Acidobacteria	585	Open in IMG/M
3300017943\|Ga0187819_10395014	Not Available	795	Open in IMG/M
3300017946\|Ga0187879_10351381	Not Available	817	Open in IMG/M
3300017948\|Ga0187847_10036179	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2899	Open in IMG/M
3300017955\|Ga0187817_10720919	Not Available	636	Open in IMG/M
3300017972\|Ga0187781_10647866	All Organisms → cellular organisms → Bacteria → Acidobacteria	762	Open in IMG/M
3300017972\|Ga0187781_11158336	All Organisms → cellular organisms → Bacteria → Acidobacteria	568	Open in IMG/M
3300018003\|Ga0187876_1282647	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter cummioxidans	533	Open in IMG/M
3300018004\|Ga0187865_1316106	Not Available	513	Open in IMG/M
3300018005\|Ga0187878_1213888	All Organisms → cellular organisms → Bacteria → Acidobacteria	714	Open in IMG/M
3300018006\|Ga0187804_10272589	All Organisms → cellular organisms → Bacteria	733	Open in IMG/M
3300018026\|Ga0187857_10570113	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	505	Open in IMG/M
3300018033\|Ga0187867_10790238	All Organisms → cellular organisms → Bacteria → Acidobacteria	515	Open in IMG/M
3300018040\|Ga0187862_10438019	Not Available	796	Open in IMG/M
3300018042\|Ga0187871_10302661	All Organisms → cellular organisms → Bacteria → Acidobacteria	885	Open in IMG/M
3300018043\|Ga0187887_10516478	Not Available	705	Open in IMG/M
3300018043\|Ga0187887_10768950	Not Available	569	Open in IMG/M
3300018047\|Ga0187859_10195342	All Organisms → cellular organisms → Bacteria → Acidobacteria	1079	Open in IMG/M
3300018057\|Ga0187858_10671084	Not Available	620	Open in IMG/M
3300018085\|Ga0187772_10304441	Not Available	1093	Open in IMG/M
3300018086\|Ga0187769_11303987	Not Available	549	Open in IMG/M
3300018090\|Ga0187770_10589257	Not Available	883	Open in IMG/M
3300018090\|Ga0187770_10630453	Not Available	853	Open in IMG/M
3300019275\|Ga0187798_1135226	All Organisms → cellular organisms → Bacteria → Acidobacteria	531	Open in IMG/M
3300019284\|Ga0187797_1324019	All Organisms → cellular organisms → Bacteria → Acidobacteria	506	Open in IMG/M
3300020581\|Ga0210399_10870060	Not Available	732	Open in IMG/M
3300021168\|Ga0210406_11211149	Not Available	549	Open in IMG/M
3300021407\|Ga0210383_11056151	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	687	Open in IMG/M
3300021861\|Ga0213853_10844489	Not Available	662	Open in IMG/M
3300022521\|Ga0224541_1024930	All Organisms → cellular organisms → Bacteria → Acidobacteria	643	Open in IMG/M
3300025434\|Ga0208690_1063986	All Organisms → cellular organisms → Bacteria → Acidobacteria	572	Open in IMG/M
3300025472\|Ga0208692_1081488	All Organisms → cellular organisms → Bacteria → Acidobacteria	675	Open in IMG/M
3300025474\|Ga0208479_1081628	Not Available	605	Open in IMG/M
3300025477\|Ga0208192_1041223	All Organisms → cellular organisms → Bacteria → Acidobacteria	954	Open in IMG/M
3300025507\|Ga0208188_1054311	Not Available	995	Open in IMG/M
3300025527\|Ga0208714_1016535	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	1842	Open in IMG/M
3300025581\|Ga0208355_1050115	All Organisms → cellular organisms → Bacteria	1026	Open in IMG/M
3300025922\|Ga0207646_10074849	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3025	Open in IMG/M
3300025922\|Ga0207646_11668714	All Organisms → cellular organisms → Bacteria	548	Open in IMG/M
3300026354\|Ga0257180_1048053	All Organisms → cellular organisms → Bacteria → Acidobacteria	603	Open in IMG/M
3300026514\|Ga0257168_1038258	All Organisms → cellular organisms → Bacteria → Acidobacteria	1037	Open in IMG/M
3300027545\|Ga0209008_1080611	All Organisms → cellular organisms → Bacteria → Acidobacteria	731	Open in IMG/M
3300027591\|Ga0209733_1083237	Not Available	820	Open in IMG/M
3300027648\|Ga0209420_1049425	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	1266	Open in IMG/M
3300027846\|Ga0209180_10107209	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	1596	Open in IMG/M
3300027869\|Ga0209579_10807835	All Organisms → cellular organisms → Bacteria → Acidobacteria	506	Open in IMG/M
3300027894\|Ga0209068_10106621	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	1484	Open in IMG/M
3300028536\|Ga0137415_10619866	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	893	Open in IMG/M
3300028574\|Ga0302153_10128950	Not Available	864	Open in IMG/M
3300028734\|Ga0302206_1088442	Not Available	791	Open in IMG/M
3300028780\|Ga0302225_10101796	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	1404	Open in IMG/M
3300028792\|Ga0307504_10223800	All Organisms → cellular organisms → Bacteria → Acidobacteria	677	Open in IMG/M
3300030007\|Ga0311338_10796602	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	942	Open in IMG/M
3300030058\|Ga0302179_10150699	All Organisms → cellular organisms → Bacteria	1027	Open in IMG/M
3300030494\|Ga0310037_10134661	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1128	Open in IMG/M
3300030503\|Ga0311370_10732464	All Organisms → cellular organisms → Bacteria	1154	Open in IMG/M
3300030520\|Ga0311372_10781489	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Anaeromyxobacteraceae → Anaeromyxobacter	1311	Open in IMG/M
3300031236\|Ga0302324_100009324	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	20546	Open in IMG/M
3300031261\|Ga0302140_10266816	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	1478	Open in IMG/M
3300031718\|Ga0307474_11202177	All Organisms → cellular organisms → Bacteria → Acidobacteria	599	Open in IMG/M
3300031720\|Ga0307469_10407433	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1163	Open in IMG/M
3300031720\|Ga0307469_11439040	All Organisms → cellular organisms → Bacteria → Acidobacteria	658	Open in IMG/M
3300031726\|Ga0302321_101986140	All Organisms → cellular organisms → Bacteria → Acidobacteria	675	Open in IMG/M
3300031962\|Ga0307479_10121068	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	2553	Open in IMG/M
3300032160\|Ga0311301_10578197	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	1630	Open in IMG/M
3300032160\|Ga0311301_12370582	All Organisms → cellular organisms → Bacteria → Acidobacteria	600	Open in IMG/M
3300032180\|Ga0307471_101411168	Not Available	856	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	63.79%
Aquatic	Environmental → Aquatic	36.21%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	54.31%
Freshwater	Environmental → Aquatic → Freshwater	30.17%
Peat	Environmental → Terrestrial → Peat	9.48%
Sediment	Environmental → Aquatic → Sediment	6.03%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	34.48%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	29.31%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	12.93%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	9.48%
Loam	Environmental → Terrestrial → Soil → Loam	6.90%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	6.03%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.86%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	18.97%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	18.10%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	9.48%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	8.62%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	8.62%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	7.76%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	6.03%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	5.17%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	4.31%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	4.31%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	2.59%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	2.59%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.59%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.86%

Habitat	Taxonomy	Distribution
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	12.93%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	9.48%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	8.62%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	6.90%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	6.03%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	5.17%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	5.17%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	4.31%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	4.31%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	3.45%
Bog	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog	3.45%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	3.45%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	2.59%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	2.59%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.59%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.59%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	1.72%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.72%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.72%
Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland	1.72%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	1.72%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	1.72%
Watersheds	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Watersheds	0.86%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.86%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	0.86%
Fen	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen	0.86%
Palsa	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa	0.86%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.86%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	0.86%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300001100	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM3_M1	Environmental	Open in IMG/M
3300002907	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm	Environmental	Open in IMG/M
3300004080	Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300004091	Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental	Open in IMG/M
3300005177	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005538	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1	Environmental	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006050	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006102	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2013	Environmental	Open in IMG/M
3300006162	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012	Environmental	Open in IMG/M
3300006172	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014	Environmental	Open in IMG/M
3300006174	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2014	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300007265	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009523	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_8_FC metaG	Environmental	Open in IMG/M
3300009525	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_7_NC metaG	Environmental	Open in IMG/M
3300009624	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_10	Environmental	Open in IMG/M
3300009628	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_10	Environmental	Open in IMG/M
3300009635	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_10	Environmental	Open in IMG/M
3300009636	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_150	Environmental	Open in IMG/M
3300009643	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_40	Environmental	Open in IMG/M
3300009672	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_2_FS metaG	Environmental	Open in IMG/M
3300009762	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_17_40	Environmental	Open in IMG/M
3300010339	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM3	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300014155	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_60_metaG	Environmental	Open in IMG/M
3300014200	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_30_metaG	Environmental	Open in IMG/M
3300014491	Permafrost microbial communities from Stordalen Mire, Sweden - 612S2D metaG	Environmental	Open in IMG/M
3300014494	Permafrost microbial communities from Stordalen Mire, Sweden - 712E3D metaG	Environmental	Open in IMG/M
3300014495	Permafrost microbial communities from Stordalen Mire, Sweden - 712P3M metaG	Environmental	Open in IMG/M
3300014838	Permafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300017925	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_40	Environmental	Open in IMG/M
3300017935	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_40	Environmental	Open in IMG/M
3300017943	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4	Environmental	Open in IMG/M
3300017946	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_10	Environmental	Open in IMG/M
3300017948	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_10	Environmental	Open in IMG/M
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental	Open in IMG/M
3300017972	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300018003	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_40	Environmental	Open in IMG/M
3300018004	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_100	Environmental	Open in IMG/M
3300018005	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_150	Environmental	Open in IMG/M
3300018006	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_4	Environmental	Open in IMG/M
3300018026	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_100	Environmental	Open in IMG/M
3300018033	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_10	Environmental	Open in IMG/M
3300018040	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_150	Environmental	Open in IMG/M
3300018042	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_10	Environmental	Open in IMG/M
3300018043	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_10	Environmental	Open in IMG/M
3300018047	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_10	Environmental	Open in IMG/M
3300018057	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_150	Environmental	Open in IMG/M
3300018085	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018086	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_10_MG	Environmental	Open in IMG/M
3300018090	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300019275	Metatranscriptome of tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_20_MT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019284	Metatranscriptome of tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_10_MT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021861	Metatranscriptome of freshwater sediment microbial communities from post-fracked creek in Pennsylvania, United States - ABR_2016 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300022521	Peat soil microbial communities from Stordalen Mire, Sweden - 717 E3 20-24	Environmental	Open in IMG/M
3300025434	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_10 (SPAdes)	Environmental	Open in IMG/M
3300025472	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_100 (SPAdes)	Environmental	Open in IMG/M
3300025474	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 415-3 deep-072012 (SPAdes)	Environmental	Open in IMG/M
3300025477	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_13_150 (SPAdes)	Environmental	Open in IMG/M
3300025507	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_40 (SPAdes)	Environmental	Open in IMG/M
3300025527	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 415-1 shallow-072012 (SPAdes)	Environmental	Open in IMG/M
3300025581	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-3 deep-072012 (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026354	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-04-B	Environmental	Open in IMG/M
3300026514	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-13-B	Environmental	Open in IMG/M
3300027545	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O3 (SPAdes)	Environmental	Open in IMG/M
3300027591	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M1 (SPAdes)	Environmental	Open in IMG/M
3300027648	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O1 (SPAdes)	Environmental	Open in IMG/M
3300027846	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027869	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027894	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012 (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300028574	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N2_2	Environmental	Open in IMG/M
3300028734	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Fen_E2_1	Environmental	Open in IMG/M
3300028780	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E3_2	Environmental	Open in IMG/M
3300028792	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 19_S	Environmental	Open in IMG/M
3300030007	I_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300030058	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E3_1	Environmental	Open in IMG/M
3300030494	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG (v2)	Environmental	Open in IMG/M
3300030503	III_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030520	III_Palsa_N2 coassembly	Environmental	Open in IMG/M
3300031236	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_1	Environmental	Open in IMG/M
3300031261	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_E1_1	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031726	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_1	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI1027J12803_1093061541	3300000955	Soil	VDDLLPLISRHGYILLAAVCLAEAIGLPLPAAIAIL
JGI12703J13194_1027901	3300001100	Forest Soil	MNDLLSSISHHGYFFLAIVCLAEAVGLPLPAALAVLTAGAVA
JGI25613J43889_100133854	3300002907	Grasslands Soil	MNDLLSLISHHGYLLLAVVCLAEAVGLPLPAALAILTAGAVAAYGKLHFYLVF
Ga0062385_106663531	3300004080	Bog Forest Soil	MTDLLSIISHHGYLFLAVVCFAEAAGLPLPASLAILTAGAVAA
Ga0062387_1003588542	3300004091	Bog Forest Soil	VTNLLSSISHHGYLFLAAMCFAEAIGLPVPAALAILTAGAVCAYGDLHFYLVLS
Ga0062389_1034944092	3300004092	Bog Forest Soil	MNNLLSSISHHGYLFLGLVCLAEAIGLPIPAALAILTAGAVAAYGDLH
Ga0062386_1006738032	3300004152	Bog Forest Soil	MKDLLTSISHHGYLFLALVCFAEAIGLPVPAALALLTAGAVAAYGDLHLYLVFAVGL
Ga0066690_108032842	3300005177	Soil	MNDLLSLISHHGYLILAVVCLAEAVGLPLPAALAILTAGAVTAYG
Ga0070706_1013246602	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MNDLLSLISRHGYLILAVVCLAEAVGLPLPAALAVLTAGAVTAYGDLHL
Ga0070731_110851661	3300005538	Surface Soil	MNDLITSISHHGYFLLAALCFAEAIGLPIPAALAILTAGAVAAYGQ
Ga0066652_1007716531	3300006046	Soil	LGLQAVDDLLPLISRHGYILLAAVCLAEAIGLPLPAA
Ga0075028_1000568373	3300006050	Watersheds	VNDLLPLISRHGYSLLAVVCFAEAIGLPLPAALAILTAGAVAAYGNL
Ga0075017_1003188021	3300006059	Watersheds	MEDLLPLIARHGYSLLAAVCLAEAVGFPLPAALAILTAGAVCAYGRMHFYSV
Ga0075015_1001763061	3300006102	Watersheds	MEDLLPLIARHGYSLLAAVCLAEAVGFPLPAALAILTA
Ga0075030_1010132052	3300006162	Watersheds	MEDLLPLISRHGYSLLAAVCLAEAVGFPLPAALAILTAGAVAAYGKMHLYSVFGVALVAMLAGDVLL
Ga0075018_100717451	3300006172	Watersheds	LNDLLPLISRHGYLLLAAVCLAEAVGLPLPAALAILTAGAVA
Ga0075014_1003675932	3300006174	Watersheds	MNNLLSLISHHGYLLLAVICFAEAVGLPLPAALGILTAGAVAAYGDLHLYLVLAIGV
Ga0070765_1000648661	3300006176	Soil	MNDLLSLISHHGYLILAVVCLAEAVGLPVPAALAILTAGAVTAYGDLHLYF
Ga0099794_105512462	3300007265	Vadose Zone Soil	MNDLLSLISHHGYLILAVVCLAEAVGLPLPAALAILTAGAVTAYGDLHLYL
Ga0099794_105867651	3300007265	Vadose Zone Soil	MDELLPLISRHGYFLLAAICLAEAVGLPLPAALAILTAGAVAAYGKLHLY
Ga0066710_1017634342	3300009012	Grasslands Soil	MDNLLALIASHGYSLLALVVFLEAVGLPMPAALALLTAGAASAYGKLNPL
Ga0099829_105637341	3300009038	Vadose Zone Soil	MNDLLSLTSHHGYLRLAVVCFAEAVGLPLPAALAILTAGAVAAYGKLHFYLVF
Ga0116221_12872751	3300009523	Peatlands Soil	MSNLLSSISHHGYVFLALVCFAEAIGLPLPAALAILTAGAVAAYGDLHFYL
Ga0116220_106142521	3300009525	Peatlands Soil	MTDLLSLISHHGYFFLAAVYLAEAIGLPLPAALALLTAG
Ga0116105_10217611	3300009624	Peatland	MHDLLTSISHHGYLFLAMVCFAEAIGLPVPAALALLTAGAVAAYGDLHFYLVFGVGLL
Ga0116125_11202532	3300009628	Peatland	MHDLLTSISHHGYLFLAMVCFAEAIGLPVPAALALL
Ga0116117_10776261	3300009635	Peatland	MNDLFHSISHHGYLFLAIVCLAEAVGLPVPAALAMLTAGAVTAYGDLHLYF
Ga0116112_10625643	3300009636	Peatland	MTDLLSIISRHGYLFLALVCFAEAIGLPLPAALAILT
Ga0116110_11920071	3300009643	Peatland	MRMTDLLSLISHHGYLFLALVCFAEAIGLPLPAALAILTAG
Ga0116215_11160331	3300009672	Peatlands Soil	MNDLLSLISHHGYLLLAVVCFAEAVGLPLPAELAILTAGAVAAYGDLHFYLVFGIALLAM
Ga0116130_10604051	3300009762	Peatland	MNDLLSVISRHGYLFLAIVCFAEAVGLPLPAALALLTAGAVAAYGGLHFYLVF
Ga0074046_100775161	3300010339	Bog Forest Soil	MNDLLSLISHHGYLFLAVVCFAEAIGLPLPAALAILTAGAVSAYGNLHFYFV
Ga0136449_1004715844	3300010379	Peatlands Soil	MTDLLSMISHHGYLFLALVCLAEAIGLPLPAALAILTAGAVAAYGDLHL
Ga0136449_1008256571	3300010379	Peatlands Soil	MTDLLSLLSHHGYLLLAVVCFAEAVGLPLPAALAILTAGAVSAYGGLHFYF
Ga0137393_105737852	3300011271	Vadose Zone Soil	MDDLSALIARHGYSLLAMIAFLEAVGFPMPAALALLAAG
Ga0137388_112043751	3300012189	Vadose Zone Soil	MNDLLSLISHHGYLLLAVICFAEAVGLPLPAALAILTAGAVAAY
Ga0137382_107600131	3300012200	Vadose Zone Soil	MNDLLSLISHHGYLILAAVCLAEAVGLPLPAALAVLTAGAVTAYGDLHLYLVI
Ga0137365_113573142	3300012201	Vadose Zone Soil	VDDLLPLISRHGYLPLAAVSLAEAFALPLPAALAILTAGAVAAYGKLHHYSVF
Ga0137419_105377191	3300012925	Vadose Zone Soil	VDDLVPLISHHGYVWLAAVCFAEAIGLPVPAALGILTAGAVAAYGKLHLYPVIGIS
Ga0137404_101579111	3300012929	Vadose Zone Soil	VDDLLPLISRHGYILLAAVCLAEAIGLLLPAAIAILTA
Ga0181524_102064532	3300014155	Bog	MNDLLSLISRHGYLFLAVVCFAEAVGLPLPAALAILTAGAVAA
Ga0181526_108290091	3300014200	Bog	MNGLLSLISHHGYLLLAVVCFAEAIGLPLPAALAL
Ga0182014_102037842	3300014491	Bog	MNNLLSSISHHGYLLLAVVCFAEAIGLPLPAALAILTAGAVSAYGGL
Ga0182014_105093932	3300014491	Bog	MNNLLSLISHHGYFFLAIVCLAEALGLPLPAALAILTAGAVAAYGGL
Ga0182017_109410772	3300014494	Fen	MTDLLSLISHHGYLLLAAMCFAEAVGLPLPAALAILTAGAVAAYGGLHFY
Ga0182015_107018531	3300014495	Palsa	MNDLLSLISHHGYLLLAAVCFAEAIGLPLPAALAILTAGA
Ga0182030_100866055	3300014838	Bog	MNDLFHSISHHGYIFLGVVCLAEAVGLPVPAALAMLTAGAVTAYGDLHL
Ga0182030_108718211	3300014838	Bog	MNNLLSLISHHGYFFLAIVCLAEALGLPLPAALAILTAGAVAAYGGLHF
Ga0187856_11644952	3300017925	Peatland	MTDLLSLISHHGYLFLALVCFAEAVGLPLPAALAILTAGAVAAYGGL
Ga0187848_103776441	3300017935	Peatland	MNDLVSIISRHGYLFLAVVCFAEAVGLPLPAALAILTA
Ga0187819_103950141	3300017943	Freshwater Sediment	MEDLLPLISRHGYSLLAAVCFAEAVGFPLPGALAIL
Ga0187879_103513811	3300017946	Peatland	MNSLLSSISHHGYLFLAIVCFAEAIGLPLPAALAILTA
Ga0187847_100361791	3300017948	Peatland	MNDLFHSISHHGYLFLAIVCLAEAVGLPVPAALAMLTAGAVTAYGDLHLYFVIMAGVVSM
Ga0187817_107209192	3300017955	Freshwater Sediment	MNDLLSLISHHGYLLLAIVCFAEAVGLPLPAALARLAAG
Ga0187781_106478661	3300017972	Tropical Peatland	MTDLLSLVSHHGYLFLALLCFAEAIGLPLPASLALLTAGAVAAYGDLHFYLV
Ga0187781_111583362	3300017972	Tropical Peatland	MDDLLTLISRHGYMLLAAICFGEAIGLPVPAALGLLTAGAVAAYGKLHFHVVFLFGLI
Ga0187876_12826471	3300018003	Peatland	MNMNDLLSLISHHGYLFLAVVCFAEAIGLPLPAALALL
Ga0187865_13161061	3300018004	Peatland	MNDFLSMISRYGYLFLAIVCLAEALGLPLPAALAI
Ga0187878_12138882	3300018005	Peatland	MTGLLSLISHHGYLFLALVCFAEAVGLPLPAALAILTAGAVAAYGGL
Ga0187804_102725893	3300018006	Freshwater Sediment	MNMNDLLSLISHHGYLFLALVCFAEAIGLPLPAALALLTAGAVAAYGDLHFYL
Ga0187857_105701132	3300018026	Peatland	MTDLLSLISHHGYLFLALVCFAEAVGLPLPAALAILTAGA
Ga0187867_107902381	3300018033	Peatland	MNDLFSLISHHGYLFLAVLCFAESVGLPLPAALAILTAGAV
Ga0187862_104380192	3300018040	Peatland	MNSLLSSISHHGYLFLAIVCFAEAIGLPLPAALAILTAGAV
Ga0187871_103026612	3300018042	Peatland	MTDLLSIISRHGYAFLAAICLAEAIGFPLPAALAILTAGAVAAYGHLHFYL
Ga0187887_105164781	3300018043	Peatland	MNDLFHSISHHGYLFLAIVCLAEAVGLPVPAALAMLTAGAVTAYGD
Ga0187887_107689502	3300018043	Peatland	MTNLLASISHHGYLFLALVCLAEAIGLPLPAALAILTAGAVAAY
Ga0187859_101953421	3300018047	Peatland	MNDLFSLISHHGYLFLAVLCFAESVGLPLPAALAILTAGAVSAYGGLHFYL
Ga0187858_106710841	3300018057	Peatland	MNSLLSSISHHGYLFLAIVCFAEAIGLPLPAALAILTAG
Ga0187772_103044412	3300018085	Tropical Peatland	MNDLTSLISHHGYALLAGICLAEAIGLPLPAALAILTAGAVAAYG
Ga0187769_113039871	3300018086	Tropical Peatland	MSDLTSLISHHGYALLAGIRLAEAIGLPLPAALAILTAGAVAAYGRLHFHLVFSVWL
Ga0187770_105892572	3300018090	Tropical Peatland	MNDLASLLRHGYALLAAICFAEAIGLPLPAALAILTAGTVAVYGQLHFYLIFVVALMS
Ga0187770_106304531	3300018090	Tropical Peatland	MNDLTSLISHHGYALLATICLAEAIGLPLPAALAILTAGA
Ga0187798_11352262	3300019275	Peatland	MNDLLSLISHHGYLFLAAICLAEAVGLPLPASLGLLTAGAVAAYGQLHLHFVLLTGVLATLLG
Ga0187797_13240191	3300019284	Peatland	MNDLLSLISHHGYLFLAAICLAEAVGLPLPASLGLLTAGAVAAYGQLHLHFVLLTGVLATLLGD
Ga0210399_108700602	3300020581	Soil	MNDLLSLISHHGYLILAAVCLAEAVGLPLPAALAVLT
Ga0210406_112111491	3300021168	Soil	MNDLLSLISHHGYLILAVVCLAEAVGLPLPAALAILTAGA
Ga0210383_110561511	3300021407	Soil	MTDLLSIISHHGYLFLAVVCFAEAAGLPLPASLAILTAGA
Ga0213853_108444892	3300021861	Watersheds	MEDLLPLISRHRYTLLAAVCFAEAIGLPLPAALAVLTAGAVA
Ga0224541_10249302	3300022521	Soil	MTDLLSMISRHGYVFLAVVCFAEAIGLPLPAALAILTA
Ga0208690_10639861	3300025434	Peatland	MHDLLTSISHHGYLFLAMVCFAEAIGLPVPAALALLT
Ga0208692_10814882	3300025472	Peatland	MNDLLSLISRHGYLFLAVVCFAEAVGLPLPAALAMLTAG
Ga0208479_10816282	3300025474	Arctic Peat Soil	MTSLLSSLSHHGYLLLAVVCFAEAVGLPLPAALAILTAGAVAAYGDLHLYLVL
Ga0208192_10412231	3300025477	Peatland	MNDLLSLISRHGYLFLAVVCFAEAVGLPLPAALAMLTAGAVAAY
Ga0208188_10543111	3300025507	Peatland	MNDLLSVISRHGYLFLAIVCFAEAVGLPLPAALALLTAGAVAAYGGLHFYLVFGIALV
Ga0208714_10165351	3300025527	Arctic Peat Soil	VTNLLSSISHHGYLLLALVCFAEAVGLPLPAALAILTAGAVAAYGDLHLYRVLG
Ga0208355_10501152	3300025581	Arctic Peat Soil	MNDLLSLISHHGYLFLAVLCFAEAVGFPLPAALAILTAGAVAAYGGL
Ga0207646_100748495	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MNDLLPLISRHGYILLAAVCLAEAVGLPLPAALAILT
Ga0207646_116687142	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MNDLLSLISHHGYLLLAVVCFAEAVGLPLPAALAILTAGAVSAYGKLHFYL
Ga0257180_10480532	3300026354	Soil	MNDLLPLISRHGYILLAAVCLAEAVGLPLPAALAILTAG
Ga0257168_10382582	3300026514	Soil	MTDLLSLISHHGYLLLAIVCFAEAVGLPLPAALAILTAGAVAAYGHLHFYLVFG
Ga0209008_10806111	3300027545	Forest Soil	MNDLRSLISHNGYLLLASICFAEAIGLPVPAALAILTAGAVAA
Ga0209733_10832372	3300027591	Forest Soil	MNDLLSSISHHGYLFLAIVCYAEAVGLPLPAALAILTAGAVSAYGDLHLYLVIV
Ga0209420_10494251	3300027648	Forest Soil	MTDLLSIISRHGYLFLALVCFAEAAGLPLPAALAILTAGAVAAYGHLHF
Ga0209180_101072093	3300027846	Vadose Zone Soil	MTDLLSLISHHGYLLLAIVCFAEAVGLPLPAALAILTAGAVAAYGHLHFYFVFGIALLTM
Ga0209579_108078352	3300027869	Surface Soil	MNDLITSISHHGYFLLAALCFAEAIGLPIPAALAILT
Ga0209068_101066213	3300027894	Watersheds	MNELLPLLSRHGYSLLAVVCFAEAIGLPLPAALAILT
Ga0137415_106198661	3300028536	Vadose Zone Soil	MNDLLSLISHHGYLILAVVCLAEAVGLPLPAALAVLTAGAVTAY
Ga0302153_101289501	3300028574	Bog	MNSLIVAISHHGYLVLAIICLAESIGLPVPAALAMLTAGAVAAYGDLHLYLAI
Ga0302206_10884422	3300028734	Fen	LNDLLPLISRHGYALLAVLCLAEAVGLPLPAALAILTAGALSAYGNLHFYSVFIVAFV
Ga0302225_101017961	3300028780	Palsa	MTDLLSIISRHGYLFLALVCFAEAAGLPLPAALAILTAGAVAAYGHLHFYLVFGISL
Ga0307504_102238001	3300028792	Soil	MNDLLPLISRHGYLLLAAVCFAEAIGLPLPAALALLTAGAVTAYGKLHIYSV
Ga0311338_107966021	3300030007	Palsa	VNNLLASISHHGYLFLAIVCFAEAIGLPVPAALAILTA
Ga0302179_101506991	3300030058	Palsa	VNNLLSSISHHGYLFLAVVCFAEAIGVPVPAALAILTAGAVAAYGDLHF
Ga0310037_101346611	3300030494	Peatlands Soil	MTDLLSLISHHGYLFLALVCFAEAIGLPLPAALAMLTAGAVAAYGDLHFYLVFG
Ga0311370_107324643	3300030503	Palsa	MTNLLSSISHHGYLFLALVCIAEAIGLPLPAALAILTAGAVAAFGDLHLYLVFG
Ga0311372_107814891	3300030520	Palsa	MTNLLSSISHHGYLFLALVCIAEAIGLPLPAALAILTAGAVAAFGDLHLYLVFGVGV
Ga0302324_1000093241	3300031236	Palsa	MTDMLAVISRHGYVFLAVVCFAEAVGLPLPAALAILTAGAVAAYGQLHFYLVL
Ga0302140_102668163	3300031261	Bog	MNSLIVAISHHGYLVLAIICLAESIGLPVPAALAMLTAGAVAAYGDL
Ga0307474_112021772	3300031718	Hardwood Forest Soil	MNDLRSLISHNGYLLLASICFAEAIGLPVPAALAILTAGAV
Ga0307469_104074333	3300031720	Hardwood Forest Soil	VDDLLPLISRHGYILLAAVCLAEAVGLPLPAALAILTAGAVAAYGKLHLYSVFGVS
Ga0307469_114390402	3300031720	Hardwood Forest Soil	VDDLLPLISRHGYLLLAAVCFTEAVGLPLPAALAILTAGAVAAYGKLHLYSVFGVSF
Ga0302321_1019861401	3300031726	Fen	MDDLLPLLSRHGYLILAGFCFAEALGLPLPAALAILTASAVSAYGKLNIYAV
Ga0307479_101210684	3300031962	Hardwood Forest Soil	MNDLRFLISHHGYFLLALVCLAEAVGLPVPAALAILTAGAVTACGDLHLYLVIGVGVL
Ga0311301_105781973	3300032160	Peatlands Soil	MTDLLSLLSHHGYLLLAVVCFAEAVGLPLPAALAIL
Ga0311301_123705821	3300032160	Peatlands Soil	MNDLLPLISRHGYLLLAAICFAEAIGLPLPAALALLTA
Ga0307471_1014111682	3300032180	Hardwood Forest Soil	MNDLRFLISHHGYFLLALVCLAEAVGLPVPAALAILTAGAVTAFGDLH

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F079170

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences