Basic Information | |
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Family ID | F079169 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 116 |
Average Sequence Length | 40 residues |
Representative Sequence | MAKLPGAIQGARVVGERYVRSQRQQNPEGRMPLFDHLR |
Number of Associated Samples | 104 |
Number of Associated Scaffolds | 116 |
Quality Assessment | |
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Transcriptomic Evidence | Yes |
Most common taxonomic group | Bacteria |
% of genes with valid RBS motifs | 90.52 % |
% of genes near scaffold ends (potentially truncated) | 95.69 % |
% of genes from short scaffolds (< 2000 bps) | 96.55 % |
Associated GOLD sequencing projects | 98 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.46 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Bacteria (97.414 % of family members) |
NCBI Taxonomy ID | 2 |
Taxonomy | All Organisms → cellular organisms → Bacteria |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (37.931 % of family members) |
Environment Ontology (ENVO) | Unclassified (26.724 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (36.207 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66. |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 36.36% β-sheet: 0.00% Coil/Unstructured: 63.64% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.46 |
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Visualization |
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All Organisms Unclassified |
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Visualization |
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Watersheds Bog Forest Soil Freshwater Sediment Soil Watersheds Soil Vadose Zone Soil Terrestrial Soil Tropical Forest Soil Surface Soil Peatlands Soil Corn, Switchgrass And Miscanthus Rhizosphere Grasslands Soil Soil Forest Soil Soil Hardwood Forest Soil Soil Soil Permafrost Soil Tropical Forest Soil Forest Soil Soil Corn, Switchgrass And Miscanthus Rhizosphere Corn Rhizosphere Switchgrass Rhizosphere Palsa Corn Rhizosphere Switchgrass Rhizosphere Populus Rhizosphere Miscanthus Rhizosphere Corn Rhizosphere Corn Rhizosphere Miscanthus Rhizosphere Rhizosphere Switchgrass Rhizosphere Miscanthus Rhizosphere Corn Rhizosphere Boreal Forest Soil |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
Ga0063454_1010033181 | 3300004081 | Soil | MAKLPGAIQGARVVGERYVRSQRQQNPEGRMPLFDHLRELRNR |
Ga0070687_1000235771 | 3300005343 | Switchgrass Rhizosphere | MAKLPGAIQGARVVGERYVRAQRRQNPEGRMPLFDHLRELRNRVVKMAK* |
Ga0070674_1004820501 | 3300005356 | Miscanthus Rhizosphere | MTKLPGAIAGARIVAERFVRSQRRQNPEGRMPLTDHIRELRDR |
Ga0070708_1005182571 | 3300005445 | Corn, Switchgrass And Miscanthus Rhizosphere | MAKLPGAIQGARVVGERYVRAQRRANPEGRMPLFDHLRELRNR |
Ga0070663_1019841142 | 3300005455 | Corn Rhizosphere | MTKLPGAIAGARIVAERFVRSQRRQNPEGRMPLTDHIREL |
Ga0070685_103313572 | 3300005466 | Switchgrass Rhizosphere | KLPGATQDARVVGERYVRSQRRANLEKWMPLFDHLRELRNRVVKMA* |
Ga0070733_106620382 | 3300005541 | Surface Soil | MTKLSGAIAGARIVGERFAHSQRQDLKNREGRMPLMDHI |
Ga0070665_1018466183 | 3300005548 | Switchgrass Rhizosphere | MAKLSGAIAGARIVGERFLRSQRQQNPEGRMPLTDH |
Ga0070762_113217203 | 3300005602 | Soil | MTKLPGAIADARIVGEQFVHSRRQQNPEGRMPLLDHIRELRNRV |
Ga0068856_1012525901 | 3300005614 | Corn Rhizosphere | MAKLPSAVAGARIVGERFVRSQRQQNPEGRIPLMDH |
Ga0075018_101346214 | 3300006172 | Watersheds | MTKLPGAIAGARVVGERFVHSRRQQNPEGRMPFMDHLRELRNR |
Ga0070712_1016132562 | 3300006175 | Corn, Switchgrass And Miscanthus Rhizosphere | MAKLPGAIQGARVVGERYVRAQRRQNPEGRMPLFDHLRELR |
Ga0063777_14930791 | 3300006861 | Peatlands Soil | MAKLPGAIQGARIVGERFVHSQRQANPEGRMPLMD |
Ga0075435_1005448383 | 3300007076 | Populus Rhizosphere | MTKLPGAIAGARIAGERFARSRRQQNPEGRMPLLDHL |
Ga0075435_1007800351 | 3300007076 | Populus Rhizosphere | MAKLPGATQDARIAGERYARSQRRANPEGRMPLFDHLRELRNR |
Ga0105243_124516982 | 3300009148 | Miscanthus Rhizosphere | MTKLPGAIAGARVVGERFVHSRRQQNPEGRMPLMDHLRELRNR |
Ga0116215_11820271 | 3300009672 | Peatlands Soil | MTKLPGALAGARIAGERFARSRRQPNPEGRMPLADHAVGGRNDICGLRLGE |
Ga0126320_15551672 | 3300010146 | Soil | MAKLPGAIQGARVVGERYVRSQRQQNPEGRMPLFDHLR |
Ga0126379_112504901 | 3300010366 | Tropical Forest Soil | MAKLPGAIAGARGVGEHWVRSQRRANPEGRMPLLEHLRE |
Ga0134125_122563282 | 3300010371 | Terrestrial Soil | MATRPGALAGARIIGERFVHSRRQNPEGRMPLLDHLRELRNR |
Ga0126381_1007955311 | 3300010376 | Tropical Forest Soil | MATRPGALAGACIVGERFVHSRRQQNPEGRMPLLDHLRELRN |
Ga0126346_10121703 | 3300010865 | Boreal Forest Soil | MAKLPGAIQGARVVGERYVRAQRQQNPEGRMPLFDHLRELRNRVV |
Ga0126350_103305683 | 3300010880 | Boreal Forest Soil | MAKLPGAIQGARIVGEKFVRAQREQNPEGRMPLMDH |
Ga0150983_133003302 | 3300011120 | Forest Soil | MASKPSAIRGARIVGARYVRLKRRANPEGRMPLMDHLRELRNR |
Ga0137399_115984721 | 3300012203 | Vadose Zone Soil | MAKLPGACQDVRIVGERYVRSQRRANLEGRMPLFDHLRELPTGS* |
Ga0137376_111010752 | 3300012208 | Vadose Zone Soil | MAKLPGATQDARIVGERYVRSQRRANLEGRMPLFDHLRELPTGS* |
Ga0137385_106329191 | 3300012359 | Vadose Zone Soil | MATRPGALAGARIIGERFVRSRRQQNPEGRMPLLDH |
Ga0137397_107313822 | 3300012685 | Vadose Zone Soil | MTKLPGAIAGARIAGEHFARSQRQQNPENPEGRMPLMDHLRELR |
Ga0137413_118401361 | 3300012924 | Vadose Zone Soil | MAKLPGAIQGARVVGERYVRAQRQQNPEGRMPLFDHLREL |
Ga0137410_112339462 | 3300012944 | Vadose Zone Soil | MTKLPGAIAGARIVAERFVRSRRRQNPEGRMPLLDHVRELRDRVVKNGAR |
Ga0164303_105255241 | 3300012957 | Soil | MTKLPGAIAGARIVAERFVRSQRRQNPEGRMPLTDHIRELRDRVVKMALALAA |
Ga0164301_103836951 | 3300012960 | Soil | MTKLPGAIAGARIVAERFVRSQRRQNPEGRMPLTDHIRELRDRV |
Ga0126369_119986672 | 3300012971 | Tropical Forest Soil | MAKKASAVTGAKIVGQRYLRSKRQQNPEGRMPLMDHLRELRNRL |
Ga0154012_1124062 | 3300013059 | Corn, Switchgrass And Miscanthus Rhizosphere | MASKPSAIRGARVVGERYIRMKRRENPEGRMPLMDHLRELR |
Ga0157373_101340714 | 3300013100 | Corn Rhizosphere | MTKLPGAIAGARIVAERFVRSQRRQNPEGRMPLTDHIRELRDRVVKMAL |
Ga0157372_119809921 | 3300013307 | Corn Rhizosphere | MTKLPGAIAGARIVAERFVRSQRRQNPEGRMPLTDHIRELRDRVVKM |
Ga0157375_132982572 | 3300013308 | Miscanthus Rhizosphere | MTKLPGAIAGARIVAERFVRSQRRQNPEGRMPLTDHIR |
Ga0182024_121670352 | 3300014501 | Permafrost | MAKLPGAVQGARIVGERFVRSQREQNPDGRMPLMD |
Ga0182041_106117201 | 3300016294 | Soil | VLALRREAVMAKLPGAVQGARVVGERFVHSQRQQNPEGRMPLMDHI |
Ga0182032_103608341 | 3300016357 | Soil | MAKKASALAGAKIVGQRYVRSKRRQNPEGRMPLMDHL |
Ga0182038_116970232 | 3300016445 | Soil | MAKLPGAIQGARIVGERYVRSQRQANPEGRMPLFD |
Ga0187809_102003151 | 3300017937 | Freshwater Sediment | MATRPGALAGARIIGERFVHSQRQQNPEGRMPLLDHIR |
Ga0206349_12541721 | 3300020075 | Corn, Switchgrass And Miscanthus Rhizosphere | MAKLPGAIQGARVVGERYVRAQRRQNPEGRMPLFDHL |
Ga0179592_102962222 | 3300020199 | Vadose Zone Soil | MAKLPGAIQGARVVGERYVRAQRRQNPEGRMPLFDHLRELRNRVVKMAL |
Ga0179592_104415451 | 3300020199 | Vadose Zone Soil | MTKLPGAIAGARIAGERFARSRRQQNPEGRMPLTD |
Ga0210403_104046021 | 3300020580 | Soil | MATRPGALAGARIAGERFARSRRRQNPEGRMPLAGHLRELRTRVVKMTLA |
Ga0210399_103249823 | 3300020581 | Soil | MTKLPGAIAGARIVGERFVHSQRQDLKNPEGRMPLMDHI |
Ga0210401_113860442 | 3300020583 | Soil | MANVPGAVQGARIVGERFVRTRQRQNPEGRMPLMEH |
Ga0210408_100622606 | 3300021178 | Soil | MAELPGATQDARIADERYVRSQRRANPEGRMPLFDHLRELRNRVVTMAK |
Ga0210408_105411131 | 3300021178 | Soil | MAKLPGAIQGARVVGERYVRAQRRANPEGRMPLFDHLRELRK |
Ga0210408_111298401 | 3300021178 | Soil | MAKIPGAIQGARVVGERYVRAQRRANPEGRMPLFDHLRELRNRV |
Ga0179958_12560692 | 3300021315 | Vadose Zone Soil | MAKLPGAIQGARVVGERYVRAQRRQNPEGRMPLFDHLRELRNR |
Ga0210391_103504333 | 3300021433 | Soil | MTTLPGAVAGARILGERFARSRRQQNPEGRMPLLDH |
Ga0210390_103141843 | 3300021474 | Soil | MASKPSAIRGARVVGDRYLRFKRQANPDGRMPLFD |
Ga0210409_108399273 | 3300021559 | Soil | MAKLPGAIQGARVVGERYVRAQRRANPEGRMPLFDHL |
Ga0210409_114380061 | 3300021559 | Soil | MARLPGAIAGARIVGKRFARSRRQDPANPEGGMALMDHLREL |
Ga0213851_14803622 | 3300021860 | Watersheds | MAKLPGAIAGARVVGERYVRLQRQQNPEGRMPLMDHL |
Ga0242664_11137781 | 3300022527 | Soil | MARKPSAVQGAAIVGARYVKAKRQENPEGRMPLMEHL |
Ga0242669_10671132 | 3300022528 | Soil | MADKPSAVKGAAIVGQRYLRSKRQENPEGRMPLMEHLR |
Ga0242671_11056361 | 3300022714 | Soil | MAKLPGAIQGARVVGEKFVHAQRQQNPEGRMPLMDHIRELRNRV |
Ga0242671_11100702 | 3300022714 | Soil | MATKPSAIRGARVVGERYIRSKRRANPEGRMPLFDHLRELR |
Ga0242678_10878262 | 3300022715 | Soil | MADNPCAVKGAAIVGARYQRSKKQGNPEGRMPLLEHL |
Ga0242657_12381461 | 3300022722 | Soil | MAKLPGALQGARIVGEKFVHAQRQQNPEGRMPLMD |
Ga0207693_104265011 | 3300025915 | Corn, Switchgrass And Miscanthus Rhizosphere | MTKLPGAVAGARVVGERFVHFQRQQNPEGRMPFMDHLR |
Ga0207662_109292323 | 3300025918 | Switchgrass Rhizosphere | MTKLPGAIAGARIVAERFVRSQRRQNPEGRMPLTDHIRELRD |
Ga0207694_109768751 | 3300025924 | Corn Rhizosphere | MATRPGALAGARIIGERFVHSQRQQNPEGRMPLLDH |
Ga0207669_114697641 | 3300025937 | Miscanthus Rhizosphere | MTKLPGAIAGARIVAERFVRSQRRQNPEGRMPLTDHIRE |
Ga0207661_103129191 | 3300025944 | Corn Rhizosphere | MAKLPGAIQGARVVGERYVRAQRRQNPEGRMPLFDHLRELRNRIV |
Ga0207702_101489641 | 3300026078 | Corn Rhizosphere | MAKLPSAVAGARIVGERFVRSQRQQNPEGRIPLMD |
Ga0209239_13249181 | 3300026310 | Grasslands Soil | MAKLPGAVQGARIVGERYVRSQRRQNPEGRMPLFD |
Ga0257146_10439913 | 3300026374 | Soil | MATRPGALAGARIIGERFVRSRRQQNPEGRMPLLDHLRELRNR |
Ga0179587_101611263 | 3300026557 | Vadose Zone Soil | MAKLPGAIQGARVVGERYVRAQRRQNPEGRMPLFDHLRELRNRVVKMALA |
Ga0179587_102107821 | 3300026557 | Vadose Zone Soil | PEAVMAKLPGAIQGARVVGERYVRAQRRQNPEGRMPLFDHLRELPTGS |
Ga0207777_10370261 | 3300027330 | Tropical Forest Soil | MAKLSSTIAGARIVGERFIHSQRQQNPEGRMPLMDHLR |
Ga0209248_100507791 | 3300027729 | Bog Forest Soil | MATHPGAVAGARILGERFARSRQQQNPEGRMPLMDHLRELR |
Ga0209380_106826991 | 3300027889 | Soil | MAKLPSAIAGARIVGERFVHTQRQRNPEGRMPLMD |
Ga0268266_107236384 | 3300028379 | Switchgrass Rhizosphere | MTKLPGAIAGARVVGERFVHSRRQQNPEGRMPFMDHLREL |
Ga0268265_120042932 | 3300028380 | Switchgrass Rhizosphere | MTKLPGAIAGARIVAERFAHSQRQQNPEGRMPLTDHIRELRDHVVKMALALAAGM |
Ga0265318_100551591 | 3300028577 | Rhizosphere | MADKPSAIRGARILGERYARAKRRQNPEGRMPLFDHL |
Ga0311368_104310273 | 3300029882 | Palsa | MAKLPGAVQGARIVGERFVRSQRQQNPDGRMPLMDQ |
Ga0210291_118351851 | 3300030626 | Soil | MPSKPSAIKGARVVGERYLRTKRQVNPEGRMPLKWRKKKEM |
Ga0265462_123442562 | 3300030738 | Soil | MAKLPGALQGARIVGEHFVRSQRQANPEGRMPLMD |
Ga0265459_127814371 | 3300030741 | Soil | MAKLPGAIQGARIVGEKFVSAQRQNPEGRMPLMDHIRELRNRVVKM |
Ga0265461_135381111 | 3300030743 | Soil | MAKLPGAVEGARIGGERFERSQRQQNPEGRMPLMDH |
Ga0302324_1020046092 | 3300031236 | Palsa | MAKLPGALAGARIVGERFVHSRRQQNPTGGMPVVHHL |
Ga0170819_151821592 | 3300031469 | Forest Soil | MASKPSAIRGARIVGERFLRSQQRANPEGRMSLKLKM |
Ga0318516_107461211 | 3300031543 | Soil | MAKKASALAGAKIVGQRYVRSKRRQNPEGRMPLMDHLRELRN |
Ga0318534_101472513 | 3300031544 | Soil | MAKLPGAIQGARIVGERYVRAQRRANPEGRMPLFD |
Ga0318573_103438733 | 3300031564 | Soil | MAKLPGAIQGARIVGERFVRSQRRVNPEGRMPVMDH |
Ga0310686_1070373771 | 3300031708 | Soil | MTKLPGAIAGARILGERFVRSRRPPNPEGRMPLTDHIRELRNR |
Ga0318496_100863301 | 3300031713 | Soil | MAKLPGAIQGARIVGERYVSSRRRANPEGRMPLFD |
Ga0318502_105263063 | 3300031747 | Soil | MAKKASAVAGAKIVGERYLRSKRRQNPEGRMPLMD |
Ga0318546_106528401 | 3300031771 | Soil | MAKKASALSGAKIVGQRYVRSKRRQNPEGRMPLMDHLREL |
Ga0318546_106713293 | 3300031771 | Soil | MAKLPGAIQGARIVGERFVRSQRQVNPEGRMPVMDHI |
Ga0318546_111182452 | 3300031771 | Soil | MARLPGAIAGARIIGERCAHSRRQQDPEGRMPLLDHLGGLRNRVVKMAPALA |
Ga0318547_108002611 | 3300031781 | Soil | MAKLPGAIQGARIVGEHFVRSQRQANPEGRMPLMDHI |
Ga0318557_100600951 | 3300031795 | Soil | MAKKASALSGAKIVGQRYVRSKRRQNPEGRMPLMDHLRE |
Ga0318568_107632921 | 3300031819 | Soil | MAKLAGAVQGARIVGERFVRSRWQQNPEGRMPLMEHIRE |
Ga0318567_100533123 | 3300031821 | Soil | MAKKASALAGAKIVGQRYVRSKRRQNPEGRMPLMDHLR |
Ga0310907_105634231 | 3300031847 | Soil | MAKLPGAIQGARVVGERYVRAQRRQNPEGRMPLFDHLREL |
Ga0318495_101671732 | 3300031860 | Soil | MAKLPSALTGARIVGERFLHSQQQNPEGRMPLMEHLRELRNRIVT |
Ga0318495_103680292 | 3300031860 | Soil | MAKLPGAIQGARIVGQRYVRAQRRQNPEGRMPLFDHLRELRN |
Ga0318520_102118593 | 3300031897 | Soil | MAKKASALSGAKIVGQRYVRSKRRQNPEGRMPLMDHLR |
Ga0310911_102416473 | 3300032035 | Soil | MAKLPGAVQGARIVGEHFVRSQRRQNPEGRMPVMDHIR |
Ga0318556_105718421 | 3300032043 | Soil | MAKLPGALAGARIVGEHFVRSQRQANPEGRMPLMDHI |
Ga0318504_103411973 | 3300032063 | Soil | MAKLSSTIAGARIVGERFIRSQRQQNPEGRMPLMD |
Ga0318513_104278622 | 3300032065 | Soil | MAKKASALSGAKIVGQRYVRSKRRQNPEGRMPLMDHLRELRNRLI |
Ga0318553_105205202 | 3300032068 | Soil | MAKLPAAIAGARIIGERFVHSQRQQNPKGRMPLMDHIR |
Ga0318553_107000412 | 3300032068 | Soil | MATRPGALAGARITGERFVRSRRQQNPEGRMPLLDHL |
Ga0307472_1021723731 | 3300032205 | Hardwood Forest Soil | MTKLPGAIAGARIVAERFVHSQRQQNPEGRMPLTDHIRELRNRVVKI |
Ga0335070_121251901 | 3300032829 | Soil | VAKLPGAIQGARVVGERYVRSQRQKNPEGRMPLFDHLRELRNRVV |
Ga0335075_112388583 | 3300032896 | Soil | MVAKLPGAIQGARIVGERFVRSQRLANPEGRMPVMDHLR |
Ga0335071_108206641 | 3300032897 | Soil | MAKLPGAIQGARIVGERYVSARRQANPEGRMPLFD |
Ga0335076_107937582 | 3300032955 | Soil | VLALRREAVMAKLPGAVQGTRVVGERFVHSQRQQNHEGRMPLMDHIRELRNRVIKVALGLIA |
Ga0318519_102244431 | 3300033290 | Soil | MAKKASALSGAKIVGQRYVRSKRRQNPEGRMPLMDHLRELRN |
Ga0318519_110618241 | 3300033290 | Soil | MAKLPGAIQGARIVGERYVRAQRRANPEGRMPLFDD |
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