NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F079169

Metagenome / Metatranscriptome Family F079169

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F079169
Family Type Metagenome / Metatranscriptome
Number of Sequences 116
Average Sequence Length 40 residues
Representative Sequence MAKLPGAIQGARVVGERYVRSQRQQNPEGRMPLFDHLR
Number of Associated Samples 104
Number of Associated Scaffolds 116

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 90.52 %
% of genes near scaffold ends (potentially truncated) 95.69 %
% of genes from short scaffolds (< 2000 bps) 96.55 %
Associated GOLD sequencing projects 98
AlphaFold2 3D model prediction Yes
3D model pTM-score0.46

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (97.414 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(37.931 % of family members)
Environment Ontology (ENVO) Unclassified
(26.724 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(36.207 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.
1Ga0063454_1010033181
2Ga0070687_1000235771
3Ga0070674_1004820501
4Ga0070708_1005182571
5Ga0070663_1019841142
6Ga0070685_103313572
7Ga0070733_106620382
8Ga0070665_1018466183
9Ga0070762_113217203
10Ga0068856_1012525901
11Ga0075018_101346214
12Ga0070712_1016132562
13Ga0063777_14930791
14Ga0075435_1005448383
15Ga0075435_1007800351
16Ga0105243_124516982
17Ga0116215_11820271
18Ga0126320_15551672
19Ga0126379_112504901
20Ga0134125_122563282
21Ga0126381_1007955311
22Ga0126346_10121703
23Ga0126350_103305683
24Ga0150983_133003302
25Ga0137399_115984721
26Ga0137376_111010752
27Ga0137385_106329191
28Ga0137397_107313822
29Ga0137413_118401361
30Ga0137410_112339462
31Ga0164303_105255241
32Ga0164301_103836951
33Ga0126369_119986672
34Ga0154012_1124062
35Ga0157373_101340714
36Ga0157372_119809921
37Ga0157375_132982572
38Ga0182024_121670352
39Ga0182041_106117201
40Ga0182032_103608341
41Ga0182038_116970232
42Ga0187809_102003151
43Ga0206349_12541721
44Ga0179592_102962222
45Ga0179592_104415451
46Ga0210403_104046021
47Ga0210399_103249823
48Ga0210401_113860442
49Ga0210408_100622606
50Ga0210408_105411131
51Ga0210408_111298401
52Ga0179958_12560692
53Ga0210391_103504333
54Ga0210390_103141843
55Ga0210409_108399273
56Ga0210409_114380061
57Ga0213851_14803622
58Ga0242664_11137781
59Ga0242669_10671132
60Ga0242671_11056361
61Ga0242671_11100702
62Ga0242678_10878262
63Ga0242657_12381461
64Ga0207693_104265011
65Ga0207662_109292323
66Ga0207694_109768751
67Ga0207669_114697641
68Ga0207661_103129191
69Ga0207702_101489641
70Ga0209239_13249181
71Ga0257146_10439913
72Ga0179587_101611263
73Ga0179587_102107821
74Ga0207777_10370261
75Ga0209248_100507791
76Ga0209380_106826991
77Ga0268266_107236384
78Ga0268265_120042932
79Ga0265318_100551591
80Ga0311368_104310273
81Ga0210291_118351851
82Ga0265462_123442562
83Ga0265459_127814371
84Ga0265461_135381111
85Ga0302324_1020046092
86Ga0170819_151821592
87Ga0318516_107461211
88Ga0318534_101472513
89Ga0318573_103438733
90Ga0310686_1070373771
91Ga0318496_100863301
92Ga0318502_105263063
93Ga0318546_106528401
94Ga0318546_106713293
95Ga0318546_111182452
96Ga0318547_108002611
97Ga0318557_100600951
98Ga0318568_107632921
99Ga0318567_100533123
100Ga0310907_105634231
101Ga0318495_101671732
102Ga0318495_103680292
103Ga0318520_102118593
104Ga0310911_102416473
105Ga0318556_105718421
106Ga0318504_103411973
107Ga0318513_104278622
108Ga0318553_105205202
109Ga0318553_107000412
110Ga0307472_1021723731
111Ga0335070_121251901
112Ga0335075_112388583
113Ga0335071_108206641
114Ga0335076_107937582
115Ga0318519_102244431
116Ga0318519_110618241
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 36.36%    β-sheet: 0.00%    Coil/Unstructured: 63.64%
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Variant

5101520253035MAKLPGAIQGARVVGERYVRSQRQQNPEGRMPLFDHLRSequenceα-helicesβ-strandsCoilSS Conf. scoreDisordered Regions
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Predicted 3D Structure

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Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.46
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy

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All Organisms
Unclassified
97.4%
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Associated Scaffolds





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Environmental Properties

Associated Habitat Types

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Visualization
Watersheds
Bog Forest Soil
Freshwater Sediment
Soil
Watersheds
Soil
Vadose Zone Soil
Terrestrial Soil
Tropical Forest Soil
Surface Soil
Peatlands Soil
Corn, Switchgrass And Miscanthus Rhizosphere
Grasslands Soil
Soil
Forest Soil
Soil
Hardwood Forest Soil
Soil
Soil
Permafrost
Soil
Tropical Forest Soil
Forest Soil
Soil
Corn, Switchgrass And Miscanthus Rhizosphere
Corn Rhizosphere
Switchgrass Rhizosphere
Palsa
Corn Rhizosphere
Switchgrass Rhizosphere
Populus Rhizosphere
Miscanthus Rhizosphere
Corn Rhizosphere
Corn Rhizosphere
Miscanthus Rhizosphere
Rhizosphere
Switchgrass Rhizosphere
Miscanthus Rhizosphere
Corn Rhizosphere
Boreal Forest Soil
9.5%37.9%3.4%
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Associated Samples


Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
Ga0063454_10100331813300004081SoilMAKLPGAIQGARVVGERYVRSQRQQNPEGRMPLFDHLRELRNR
Ga0070687_10002357713300005343Switchgrass RhizosphereMAKLPGAIQGARVVGERYVRAQRRQNPEGRMPLFDHLRELRNRVVKMAK*
Ga0070674_10048205013300005356Miscanthus RhizosphereMTKLPGAIAGARIVAERFVRSQRRQNPEGRMPLTDHIRELRDR
Ga0070708_10051825713300005445Corn, Switchgrass And Miscanthus RhizosphereMAKLPGAIQGARVVGERYVRAQRRANPEGRMPLFDHLRELRNR
Ga0070663_10198411423300005455Corn RhizosphereMTKLPGAIAGARIVAERFVRSQRRQNPEGRMPLTDHIREL
Ga0070685_1033135723300005466Switchgrass RhizosphereKLPGATQDARVVGERYVRSQRRANLEKWMPLFDHLRELRNRVVKMA*
Ga0070733_1066203823300005541Surface SoilMTKLSGAIAGARIVGERFAHSQRQDLKNREGRMPLMDHI
Ga0070665_10184661833300005548Switchgrass RhizosphereMAKLSGAIAGARIVGERFLRSQRQQNPEGRMPLTDH
Ga0070762_1132172033300005602SoilMTKLPGAIADARIVGEQFVHSRRQQNPEGRMPLLDHIRELRNRV
Ga0068856_10125259013300005614Corn RhizosphereMAKLPSAVAGARIVGERFVRSQRQQNPEGRIPLMDH
Ga0075018_1013462143300006172WatershedsMTKLPGAIAGARVVGERFVHSRRQQNPEGRMPFMDHLRELRNR
Ga0070712_10161325623300006175Corn, Switchgrass And Miscanthus RhizosphereMAKLPGAIQGARVVGERYVRAQRRQNPEGRMPLFDHLRELR
Ga0063777_149307913300006861Peatlands SoilMAKLPGAIQGARIVGERFVHSQRQANPEGRMPLMD
Ga0075435_10054483833300007076Populus RhizosphereMTKLPGAIAGARIAGERFARSRRQQNPEGRMPLLDHL
Ga0075435_10078003513300007076Populus RhizosphereMAKLPGATQDARIAGERYARSQRRANPEGRMPLFDHLRELRNR
Ga0105243_1245169823300009148Miscanthus RhizosphereMTKLPGAIAGARVVGERFVHSRRQQNPEGRMPLMDHLRELRNR
Ga0116215_118202713300009672Peatlands SoilMTKLPGALAGARIAGERFARSRRQPNPEGRMPLADHAVGGRNDICGLRLGE
Ga0126320_155516723300010146SoilMAKLPGAIQGARVVGERYVRSQRQQNPEGRMPLFDHLR
Ga0126379_1125049013300010366Tropical Forest SoilMAKLPGAIAGARGVGEHWVRSQRRANPEGRMPLLEHLRE
Ga0134125_1225632823300010371Terrestrial SoilMATRPGALAGARIIGERFVHSRRQNPEGRMPLLDHLRELRNR
Ga0126381_10079553113300010376Tropical Forest SoilMATRPGALAGACIVGERFVHSRRQQNPEGRMPLLDHLRELRN
Ga0126346_101217033300010865Boreal Forest SoilMAKLPGAIQGARVVGERYVRAQRQQNPEGRMPLFDHLRELRNRVV
Ga0126350_1033056833300010880Boreal Forest SoilMAKLPGAIQGARIVGEKFVRAQREQNPEGRMPLMDH
Ga0150983_1330033023300011120Forest SoilMASKPSAIRGARIVGARYVRLKRRANPEGRMPLMDHLRELRNR
Ga0137399_1159847213300012203Vadose Zone SoilMAKLPGACQDVRIVGERYVRSQRRANLEGRMPLFDHLRELPTGS*
Ga0137376_1110107523300012208Vadose Zone SoilMAKLPGATQDARIVGERYVRSQRRANLEGRMPLFDHLRELPTGS*
Ga0137385_1063291913300012359Vadose Zone SoilMATRPGALAGARIIGERFVRSRRQQNPEGRMPLLDH
Ga0137397_1073138223300012685Vadose Zone SoilMTKLPGAIAGARIAGEHFARSQRQQNPENPEGRMPLMDHLRELR
Ga0137413_1184013613300012924Vadose Zone SoilMAKLPGAIQGARVVGERYVRAQRQQNPEGRMPLFDHLREL
Ga0137410_1123394623300012944Vadose Zone SoilMTKLPGAIAGARIVAERFVRSRRRQNPEGRMPLLDHVRELRDRVVKNGAR
Ga0164303_1052552413300012957SoilMTKLPGAIAGARIVAERFVRSQRRQNPEGRMPLTDHIRELRDRVVKMALALAA
Ga0164301_1038369513300012960SoilMTKLPGAIAGARIVAERFVRSQRRQNPEGRMPLTDHIRELRDRV
Ga0126369_1199866723300012971Tropical Forest SoilMAKKASAVTGAKIVGQRYLRSKRQQNPEGRMPLMDHLRELRNRL
Ga0154012_11240623300013059Corn, Switchgrass And Miscanthus RhizosphereMASKPSAIRGARVVGERYIRMKRRENPEGRMPLMDHLRELR
Ga0157373_1013407143300013100Corn RhizosphereMTKLPGAIAGARIVAERFVRSQRRQNPEGRMPLTDHIRELRDRVVKMAL
Ga0157372_1198099213300013307Corn RhizosphereMTKLPGAIAGARIVAERFVRSQRRQNPEGRMPLTDHIRELRDRVVKM
Ga0157375_1329825723300013308Miscanthus RhizosphereMTKLPGAIAGARIVAERFVRSQRRQNPEGRMPLTDHIR
Ga0182024_1216703523300014501PermafrostMAKLPGAVQGARIVGERFVRSQREQNPDGRMPLMD
Ga0182041_1061172013300016294SoilVLALRREAVMAKLPGAVQGARVVGERFVHSQRQQNPEGRMPLMDHI
Ga0182032_1036083413300016357SoilMAKKASALAGAKIVGQRYVRSKRRQNPEGRMPLMDHL
Ga0182038_1169702323300016445SoilMAKLPGAIQGARIVGERYVRSQRQANPEGRMPLFD
Ga0187809_1020031513300017937Freshwater SedimentMATRPGALAGARIIGERFVHSQRQQNPEGRMPLLDHIR
Ga0206349_125417213300020075Corn, Switchgrass And Miscanthus RhizosphereMAKLPGAIQGARVVGERYVRAQRRQNPEGRMPLFDHL
Ga0179592_1029622223300020199Vadose Zone SoilMAKLPGAIQGARVVGERYVRAQRRQNPEGRMPLFDHLRELRNRVVKMAL
Ga0179592_1044154513300020199Vadose Zone SoilMTKLPGAIAGARIAGERFARSRRQQNPEGRMPLTD
Ga0210403_1040460213300020580SoilMATRPGALAGARIAGERFARSRRRQNPEGRMPLAGHLRELRTRVVKMTLA
Ga0210399_1032498233300020581SoilMTKLPGAIAGARIVGERFVHSQRQDLKNPEGRMPLMDHI
Ga0210401_1138604423300020583SoilMANVPGAVQGARIVGERFVRTRQRQNPEGRMPLMEH
Ga0210408_1006226063300021178SoilMAELPGATQDARIADERYVRSQRRANPEGRMPLFDHLRELRNRVVTMAK
Ga0210408_1054111313300021178SoilMAKLPGAIQGARVVGERYVRAQRRANPEGRMPLFDHLRELRK
Ga0210408_1112984013300021178SoilMAKIPGAIQGARVVGERYVRAQRRANPEGRMPLFDHLRELRNRV
Ga0179958_125606923300021315Vadose Zone SoilMAKLPGAIQGARVVGERYVRAQRRQNPEGRMPLFDHLRELRNR
Ga0210391_1035043333300021433SoilMTTLPGAVAGARILGERFARSRRQQNPEGRMPLLDH
Ga0210390_1031418433300021474SoilMASKPSAIRGARVVGDRYLRFKRQANPDGRMPLFD
Ga0210409_1083992733300021559SoilMAKLPGAIQGARVVGERYVRAQRRANPEGRMPLFDHL
Ga0210409_1143800613300021559SoilMARLPGAIAGARIVGKRFARSRRQDPANPEGGMALMDHLREL
Ga0213851_148036223300021860WatershedsMAKLPGAIAGARVVGERYVRLQRQQNPEGRMPLMDHL
Ga0242664_111377813300022527SoilMARKPSAVQGAAIVGARYVKAKRQENPEGRMPLMEHL
Ga0242669_106711323300022528SoilMADKPSAVKGAAIVGQRYLRSKRQENPEGRMPLMEHLR
Ga0242671_110563613300022714SoilMAKLPGAIQGARVVGEKFVHAQRQQNPEGRMPLMDHIRELRNRV
Ga0242671_111007023300022714SoilMATKPSAIRGARVVGERYIRSKRRANPEGRMPLFDHLRELR
Ga0242678_108782623300022715SoilMADNPCAVKGAAIVGARYQRSKKQGNPEGRMPLLEHL
Ga0242657_123814613300022722SoilMAKLPGALQGARIVGEKFVHAQRQQNPEGRMPLMD
Ga0207693_1042650113300025915Corn, Switchgrass And Miscanthus RhizosphereMTKLPGAVAGARVVGERFVHFQRQQNPEGRMPFMDHLR
Ga0207662_1092923233300025918Switchgrass RhizosphereMTKLPGAIAGARIVAERFVRSQRRQNPEGRMPLTDHIRELRD
Ga0207694_1097687513300025924Corn RhizosphereMATRPGALAGARIIGERFVHSQRQQNPEGRMPLLDH
Ga0207669_1146976413300025937Miscanthus RhizosphereMTKLPGAIAGARIVAERFVRSQRRQNPEGRMPLTDHIRE
Ga0207661_1031291913300025944Corn RhizosphereMAKLPGAIQGARVVGERYVRAQRRQNPEGRMPLFDHLRELRNRIV
Ga0207702_1014896413300026078Corn RhizosphereMAKLPSAVAGARIVGERFVRSQRQQNPEGRIPLMD
Ga0209239_132491813300026310Grasslands SoilMAKLPGAVQGARIVGERYVRSQRRQNPEGRMPLFD
Ga0257146_104399133300026374SoilMATRPGALAGARIIGERFVRSRRQQNPEGRMPLLDHLRELRNR
Ga0179587_1016112633300026557Vadose Zone SoilMAKLPGAIQGARVVGERYVRAQRRQNPEGRMPLFDHLRELRNRVVKMALA
Ga0179587_1021078213300026557Vadose Zone SoilPEAVMAKLPGAIQGARVVGERYVRAQRRQNPEGRMPLFDHLRELPTGS
Ga0207777_103702613300027330Tropical Forest SoilMAKLSSTIAGARIVGERFIHSQRQQNPEGRMPLMDHLR
Ga0209248_1005077913300027729Bog Forest SoilMATHPGAVAGARILGERFARSRQQQNPEGRMPLMDHLRELR
Ga0209380_1068269913300027889SoilMAKLPSAIAGARIVGERFVHTQRQRNPEGRMPLMD
Ga0268266_1072363843300028379Switchgrass RhizosphereMTKLPGAIAGARVVGERFVHSRRQQNPEGRMPFMDHLREL
Ga0268265_1200429323300028380Switchgrass RhizosphereMTKLPGAIAGARIVAERFAHSQRQQNPEGRMPLTDHIRELRDHVVKMALALAAGM
Ga0265318_1005515913300028577RhizosphereMADKPSAIRGARILGERYARAKRRQNPEGRMPLFDHL
Ga0311368_1043102733300029882PalsaMAKLPGAVQGARIVGERFVRSQRQQNPDGRMPLMDQ
Ga0210291_1183518513300030626SoilMPSKPSAIKGARVVGERYLRTKRQVNPEGRMPLKWRKKKEM
Ga0265462_1234425623300030738SoilMAKLPGALQGARIVGEHFVRSQRQANPEGRMPLMD
Ga0265459_1278143713300030741SoilMAKLPGAIQGARIVGEKFVSAQRQNPEGRMPLMDHIRELRNRVVKM
Ga0265461_1353811113300030743SoilMAKLPGAVEGARIGGERFERSQRQQNPEGRMPLMDH
Ga0302324_10200460923300031236PalsaMAKLPGALAGARIVGERFVHSRRQQNPTGGMPVVHHL
Ga0170819_1518215923300031469Forest SoilMASKPSAIRGARIVGERFLRSQQRANPEGRMSLKLKM
Ga0318516_1074612113300031543SoilMAKKASALAGAKIVGQRYVRSKRRQNPEGRMPLMDHLRELRN
Ga0318534_1014725133300031544SoilMAKLPGAIQGARIVGERYVRAQRRANPEGRMPLFD
Ga0318573_1034387333300031564SoilMAKLPGAIQGARIVGERFVRSQRRVNPEGRMPVMDH
Ga0310686_10703737713300031708SoilMTKLPGAIAGARILGERFVRSRRPPNPEGRMPLTDHIRELRNR
Ga0318496_1008633013300031713SoilMAKLPGAIQGARIVGERYVSSRRRANPEGRMPLFD
Ga0318502_1052630633300031747SoilMAKKASAVAGAKIVGERYLRSKRRQNPEGRMPLMD
Ga0318546_1065284013300031771SoilMAKKASALSGAKIVGQRYVRSKRRQNPEGRMPLMDHLREL
Ga0318546_1067132933300031771SoilMAKLPGAIQGARIVGERFVRSQRQVNPEGRMPVMDHI
Ga0318546_1111824523300031771SoilMARLPGAIAGARIIGERCAHSRRQQDPEGRMPLLDHLGGLRNRVVKMAPALA
Ga0318547_1080026113300031781SoilMAKLPGAIQGARIVGEHFVRSQRQANPEGRMPLMDHI
Ga0318557_1006009513300031795SoilMAKKASALSGAKIVGQRYVRSKRRQNPEGRMPLMDHLRE
Ga0318568_1076329213300031819SoilMAKLAGAVQGARIVGERFVRSRWQQNPEGRMPLMEHIRE
Ga0318567_1005331233300031821SoilMAKKASALAGAKIVGQRYVRSKRRQNPEGRMPLMDHLR
Ga0310907_1056342313300031847SoilMAKLPGAIQGARVVGERYVRAQRRQNPEGRMPLFDHLREL
Ga0318495_1016717323300031860SoilMAKLPSALTGARIVGERFLHSQQQNPEGRMPLMEHLRELRNRIVT
Ga0318495_1036802923300031860SoilMAKLPGAIQGARIVGQRYVRAQRRQNPEGRMPLFDHLRELRN
Ga0318520_1021185933300031897SoilMAKKASALSGAKIVGQRYVRSKRRQNPEGRMPLMDHLR
Ga0310911_1024164733300032035SoilMAKLPGAVQGARIVGEHFVRSQRRQNPEGRMPVMDHIR
Ga0318556_1057184213300032043SoilMAKLPGALAGARIVGEHFVRSQRQANPEGRMPLMDHI
Ga0318504_1034119733300032063SoilMAKLSSTIAGARIVGERFIRSQRQQNPEGRMPLMD
Ga0318513_1042786223300032065SoilMAKKASALSGAKIVGQRYVRSKRRQNPEGRMPLMDHLRELRNRLI
Ga0318553_1052052023300032068SoilMAKLPAAIAGARIIGERFVHSQRQQNPKGRMPLMDHIR
Ga0318553_1070004123300032068SoilMATRPGALAGARITGERFVRSRRQQNPEGRMPLLDHL
Ga0307472_10217237313300032205Hardwood Forest SoilMTKLPGAIAGARIVAERFVHSQRQQNPEGRMPLTDHIRELRNRVVKI
Ga0335070_1212519013300032829SoilVAKLPGAIQGARVVGERYVRSQRQKNPEGRMPLFDHLRELRNRVV
Ga0335075_1123885833300032896SoilMVAKLPGAIQGARIVGERFVRSQRLANPEGRMPVMDHLR
Ga0335071_1082066413300032897SoilMAKLPGAIQGARIVGERYVSARRQANPEGRMPLFD
Ga0335076_1079375823300032955SoilVLALRREAVMAKLPGAVQGTRVVGERFVHSQRQQNHEGRMPLMDHIRELRNRVIKVALGLIA
Ga0318519_1022444313300033290SoilMAKKASALSGAKIVGQRYVRSKRRQNPEGRMPLMDHLRELRN
Ga0318519_1106182413300033290SoilMAKLPGAIQGARIVGERYVRAQRRANPEGRMPLFDD


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