Metagenome / Metatranscriptome Family F079155

Overview

Basic Information

• Family ID: F079155
• Family Type: Metagenome / Metatranscriptome
• Number of Sequences: 116
• Average Sequence Length: 41 residues
• Representative Sequence: MRDPEIIETELMEISAIADDSIKLERIIAWCASHPDEVPF
• Number of Associated Samples: 106
• Number of Associated Scaffolds: 116

Quality Assessment

• Transcriptomic Evidence: Yes
• Most common taxonomic group: Bacteria
• % of genes with valid RBS motifs: 68.10 %
• % of genes near scaffold ends (potentially truncated): 93.10 %
• % of genes from short scaffolds (< 2000 bps): 90.52 %
• Associated GOLD sequencing projects: 98
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.70

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Bacteria (81.897 % of family members)
• NCBI Taxonomy ID: 2
• Taxonomy: All Organisms → cellular organisms → Bacteria

Most Common Ecosystem

• GOLD Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil (9.483 % of family members)
• Environment Ontology (ENVO): Unclassified (22.414 % of family members)
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline) (35.345 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Globular
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 42.65%
  β-sheet: 0.00%
  Coil/Unstructured: 57.35%

Predicted 3D Structure

Structural matches with SCOPe domains

SCOP family	SCOP domain	Representative PDB	TM-score
a.102.3.2: Hyaluronate lyase-like catalytic, N-terminal domain	d1hn0a1	1hn0	0.74215
a.24.15.0: automated matches	d3gwla1	3gwl	0.71471
a.253.1.1: AF0941-like	d1yoza1	1yoz	0.70158
d.64.2.1: TM1457-like	d2idla1	2idl	0.69585
c.56.5.4: Bacterial dinuclear zinc exopeptidases	d1cg2a1	1cg2	0.69235

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 116 Family Scaffolds
PF06283	ThuA	4.31
PF02687	FtsX	3.45
PF01546	Peptidase_M20	2.59
PF12543	DUF3738	2.59
PF02543	Carbam_trans_N	2.59
PF13378	MR_MLE_C	1.72
PF06532	NrsF	1.72
PF00271	Helicase_C	1.72
PF01431	Peptidase_M13	1.72
PF04226	Transgly_assoc	1.72

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 116 Family Scaffolds
COG4813	Trehalose utilization protein	Carbohydrate transport and metabolism [G]	4.31
COG2192	Predicted carbamoyl transferase, NodU family	General function prediction only [R]	2.59
COG2261	Uncharacterized membrane protein YeaQ/YmgE, transglycosylase-associated protein family	General function prediction only [R]	1.72
COG4944	Uncharacterized conserved protein	Function unknown [S]	1.72
COG3590	Predicted metalloendopeptidase	Posttranslational modification, protein turnover, chaperones [O]	1.72
COG3527	Alpha-acetolactate decarboxylase	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.86
COG2366	Acyl-homoserine lactone (AHL) acylase PvdQ	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.86
COG2801	Transposase InsO and inactivated derivatives	Mobilome: prophages, transposons [X]	0.86
COG2826	Transposase and inactivated derivatives, IS30 family	Mobilome: prophages, transposons [X]	0.86
COG3039	Transposase and inactivated derivatives, IS5 family	Mobilome: prophages, transposons [X]	0.86

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	83.62 %
Unclassified	root	N/A	16.38 %

Level 2

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	83.62 %
Unclassified	root	N/A	16.38 %

Level 3

Name	Rank	Taxonomy	Distribution
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	1.72 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	81.90 %
Unclassified	root	N/A	16.38 %

Level 4

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	58.62 %
DPANN group	clade	All Organisms → cellular organisms → Archaea → DPANN group	1.72 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.86 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.86 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.86 %
Unclassified	root	N/A	16.38 %

Level 5

Name	Rank	Taxonomy	Distribution
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	42.24 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.86 %
Candidatus Micrarchaeota	phylum	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Micrarchaeota	1.72 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.86 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.86 %
Unclassified	root	N/A	16.38 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	4.31 %

Level 6

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4.31 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	5.17 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.86 %
Bryobacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	36.21 %
Candidatus Brocadiia	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Candidatus Brocadiia	0.86 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.86 %
Unclassified	root	N/A	16.38 %
unclassified Candidatus Micrarchaeota	no rank	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Micrarchaeota → unclassified Candidatus Micrarchaeota	1.72 %

Level 7

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4.31 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	5.17 %
Bryobacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae	19.83 %
Candidatus Brocadiales	order	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Candidatus Brocadiia → Candidatus Brocadiales	0.86 %
Candidatus Micrarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Micrarchaeota → unclassified Candidatus Micrarchaeota → Candidatus Micrarchaeota archaeon	1.72 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.86 %
Geodermatophilales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales	0.86 %
Solibacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	11.21 %
Unclassified	root	N/A	16.38 %
unclassified Bryobacterales	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales	1.72 %

Level 8

Name	Rank	Taxonomy	Distribution
Acidisarcina	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidisarcina	1.72 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4.31 %
Bryobacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → Bryobacter	0.86 %
Bryobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium	1.72 %
Candidatus Micrarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Micrarchaeota → unclassified Candidatus Micrarchaeota → Candidatus Micrarchaeota archaeon	1.72 %
Candidatus Scalinduaceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Candidatus Brocadiia → Candidatus Brocadiales → Candidatus Scalinduaceae	0.86 %
Candidatus Solibacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter	6.03 %
Candidatus Sulfopaludibacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter	4.31 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.86 %
Geodermatophilaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae	0.86 %
Granulicella	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella	0.86 %
Paludibaculum	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → Paludibaculum	18.97 %
Unclassified	root	N/A	16.38 %

Level 9

Name	Rank	Taxonomy	Distribution
Acidisarcina polymorpha	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidisarcina → Acidisarcina polymorpha	1.72 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4.31 %
Bryobacter aggregatus	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → Bryobacter → Bryobacter aggregatus	0.86 %
Bryobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium	1.72 %
Candidatus Micrarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Micrarchaeota → unclassified Candidatus Micrarchaeota → Candidatus Micrarchaeota archaeon	1.72 %
Candidatus Scalindua	genus	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Candidatus Brocadiia → Candidatus Brocadiales → Candidatus Scalinduaceae → Candidatus Scalindua	0.86 %
Candidatus Solibacter usitatus	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	5.17 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.86 %
Granulicella sibirica	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella sibirica	0.86 %
Paludibaculum fermentans	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → Paludibaculum → Paludibaculum fermentans	18.97 %
Unclassified	root	N/A	16.38 %
unclassified Candidatus Sulfopaludibacter	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter	3.45 %
unclassified Geodermatophilaceae	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → unclassified Geodermatophilaceae	0.86 %

Level 10

Name	Rank	Taxonomy	Distribution
Acidisarcina polymorpha	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidisarcina → Acidisarcina polymorpha	1.72 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4.31 %
Bryobacter aggregatus	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → Bryobacter → Bryobacter aggregatus	0.86 %
Bryobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium	1.72 %
Candidatus Micrarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Micrarchaeota → unclassified Candidatus Micrarchaeota → Candidatus Micrarchaeota archaeon	1.72 %
Candidatus Scalindua rubra	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Candidatus Brocadiia → Candidatus Brocadiales → Candidatus Scalinduaceae → Candidatus Scalindua → Candidatus Scalindua rubra	0.86 %
Candidatus Solibacter usitatus Ellin6076	isolate	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus → Candidatus Solibacter usitatus Ellin6076	3.45 %
Candidatus Sulfopaludibacter sp. SbA3	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA3	1.72 %
Candidatus Sulfopaludibacter sp. SbA4	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA4	1.72 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.86 %
Geodermatophilaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → unclassified Geodermatophilaceae → Geodermatophilaceae bacterium	0.86 %
Granulicella sibirica	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella sibirica	0.86 %
Paludibaculum fermentans	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → Paludibaculum → Paludibaculum fermentans	18.97 %
Unclassified	root	N/A	16.38 %

Associated Scaffolds

Scaffold	Taxonomy	Length
3300001213|JGIcombinedJ13530_102704478	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → Bryobacter → Bryobacter aggregatus	1267
3300002568|C688J35102_118760460	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus → Candidatus Solibacter usitatus Ellin6076	593
3300004631|Ga0058899_11836654	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	770
3300005332|Ga0066388_106819462	All Organisms → cellular organisms → Bacteria → Acidobacteria	575
3300005367|Ga0070667_100882007	Not Available	832
3300005435|Ga0070714_101085224	All Organisms → cellular organisms → Bacteria	780
3300005436|Ga0070713_101945631	All Organisms → cellular organisms → Bacteria → Acidobacteria	570
3300005531|Ga0070738_10287873	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter	694
3300005534|Ga0070735_10586035	Not Available	662
3300005541|Ga0070733_10660723	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → Paludibaculum → Paludibaculum fermentans	701

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Environmental	Environmental	86.21%
Host-Associated	Host-Associated	13.79%

Class

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	18.97%
Plants	Host-Associated → Plants	13.79%
Terrestrial	Environmental → Terrestrial	67.24%

Category

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	13.79%
Marine	Environmental → Aquatic → Marine	0.86%
Peat	Environmental → Terrestrial → Peat	6.90%
Rhizoplane	Host-Associated → Plants → Rhizoplane	4.31%
Rhizosphere	Host-Associated → Plants → Rhizosphere	6.90%
Roots	Host-Associated → Plants → Roots	2.59%
Sediment	Environmental → Aquatic → Sediment	4.31%
Soil	Environmental → Terrestrial → Soil	60.34%

Type

Habitat	Taxonomy	Distribution
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	3.45%
Ice	Environmental → Aquatic → Freshwater → Ice	0.86%
Loam	Environmental → Terrestrial → Soil → Loam	7.76%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	1.72%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.86%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.59%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	27.59%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	6.90%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	4.31%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	4.31%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.86%
Unclassified	Host-Associated → Plants → Roots → Unclassified	0.86%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	25.00%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	12.07%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.86%

Subtype

Habitat	Taxonomy	Distribution
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	5.17%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.17%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	8.62%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	7.76%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	1.72%
Glacier	Environmental → Aquatic → Freshwater → Ice → Glacier	0.86%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.86%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	14.66%
Sediment	Environmental → Aquatic → Marine → Wetlands → Sediment	0.86%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	1.72%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	14.66%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	10.34%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	6.90%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	4.31%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	4.31%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	3.45%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	3.45%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.59%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.86%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.86%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	0.86%

Habitat

Habitat	Taxonomy	Distribution
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	1.72%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.86%
Bog	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog	4.31%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	3.45%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	1.72%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.45%
Fen	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen	8.62%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.86%
Glacier Valley	Environmental → Aquatic → Freshwater → Ice → Glacier → Glacier Valley	0.86%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.86%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.86%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	1.72%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.72%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.86%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	1.72%
Palsa	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa	0.86%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	0.86%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	5.17%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	3.45%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	3.45%
Plant Roots	Host-Associated → Plants → Roots → Unclassified → Unclassified → Plant Roots	0.86%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.86%
Prmafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Prmafrost Soil	0.86%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	1.72%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	9.48%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	5.17%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	5.17%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.59%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	2.59%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.72%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.86%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	4.31%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.72%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.72%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.86%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.86%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.72%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.86%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	0.86%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	2.59%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	3.45%
Watersheds	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Watersheds	0.86%
Wetland	Environmental → Aquatic → Marine → Wetlands → Sediment → Wetland	0.86%

Associated Samples

Taxon OID	Sample Name	Habitat Type
3300001213	Combined assembly of wetland microbial communities from Twitchell Island in the Sacramento Delta (Jan 2013 JGI Velvet Assembly)	Environmental
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental
3300004631	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF234 (Metagenome Metatranscriptome)	Environmental
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental
3300005367	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG	Host-Associated
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental
3300005531	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen12_06102014_R2	Environmental
3300005534	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1	Environmental
3300005541	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1	Environmental

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGIcombinedJ13530_1027044782	3300001213	Wetland	MRDPEIIETELMEISAIADDTLKFERIIAWCASHPDEVPFALHQL
C688J35102_1187604602	3300002568	Soil	MRDPETIETELMEISAIADDTVKFERIIAWCATHPDEVPFA
Ga0058899_118366543	3300004631	Forest Soil	MRDREIIETELMEISAIADDAVKFERIVAWCAARPDEVPFALHQLL
Ga0066388_1068194621	3300005332	Tropical Forest Soil	VCHPGVSMRDAEIIETELMEISAIPEDAVKLERIIAWCATHPDEVPFAL
Ga0070667_1008820072	3300005367	Switchgrass Rhizosphere	MRDPQVIEAELVEIGAISDDSLKLERIIAWCATYPDEVPFAIRLLLDR*
Ga0070714_1010852242	3300005435	Agricultural Soil	MRDPETIETELMEISAIADDGVKLERIIAWCATHPDEVPFALHQ
Ga0070713_1019456311	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MLVFLMRDPETIETELMEISAIAEDTVKFERIVAWCVAHPDEIPFAL
Ga0070738_102878731	3300005531	Surface Soil	MRDPETIETDLMDIAAIADEGVKLERIIAWCAVHPDEIP
Ga0070735_105860351	3300005534	Surface Soil	MREPETIENELIEIGAIPDDLVKFERIVAWCAAHPDEVP
Ga0070733_106607231	3300005541	Surface Soil	MCHARVSMRDPEIIETELMEIGAVADDAVKLERIIAWCASHPDEVPFA
Ga0068870_106774571	3300005840	Miscanthus Rhizosphere	MLVCMRDPETIDTELMEISAITDDVLKLERIIAWCATHPDEVPFALHQF
Ga0070717_112341001	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	VRRDEQIVEAELMEISAIQDDTIKLERIVAWCANYPDEIPF
Ga0070717_114635032	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MRDPETIETELMEISSIADDLVKFERIIAWCASHP
Ga0075029_1009359651	3300006052	Watersheds	MRDLEIIETELMEISAIADDTIKLERIIAWCASHPDEVPFALHQL
Ga0075030_1001489363	3300006162	Watersheds	MRDLDTVESELFEISAIPEDGLKLERIIAWCATHPDEVPMAIHLLLVRRNAETPKE*
Ga0075018_105585281	3300006172	Watersheds	MRDLAVIEAELSEISAIQDDTLKLERIVAWSAAHPHEVPLALRFF
Ga0097621_1010910632	3300006237	Miscanthus Rhizosphere	MWHASSMRDPAVIEAELIEISAIADDTLKLERIIAWCATHPDE
Ga0068871_1020785201	3300006358	Miscanthus Rhizosphere	MRDPEVIEAELMEISGTADDTIKLERIIAWCASHPDEVP
Ga0075433_112563711	3300006852	Populus Rhizosphere	MRDAEIIETELMEISAIADDTVKFERIIAWCATHPDE
Ga0105245_102960693	3300009098	Miscanthus Rhizosphere	MRDLQVIEAELVEIGAISDDSLKLERIIAWCATYPDEVPFAIRLLLDR*
Ga0105248_102185343	3300009177	Switchgrass Rhizosphere	MRDPEIIETELMEISAIPDDLVKLERIIAWCASHPDEV
Ga0105248_114067432	3300009177	Switchgrass Rhizosphere	MLVCMRDPETIDTELMEISAITDDVLKLERIIAWCATHPD
Ga0116114_10214601	3300009630	Peatland	MRAPEVIETELMEISAIAEDTDKLERTIAWCATHPDEVPFALHQLL
Ga0116112_12357062	3300009636	Peatland	MRDPETIETELMEISAIAGDAVKLERIIAWCACHPDEVPF
Ga0116216_109163011	3300009698	Peatlands Soil	MRDPEIIETELMEISAIADDTLKFERIIAWCASHPD
Ga0116217_106362241	3300009700	Peatlands Soil	MRDSETIETELMEISAIADESIKLERIIAWCASHPDEVPFA
Ga0136449_1005746966	3300010379	Peatlands Soil	MRDPEIIETELMEISAIADDTLKFERIIAWCASHPDEVPFALHQF
Ga0137392_108195932	3300011269	Vadose Zone Soil	MRDPEIIENELMEISAIADDTIKLERIIAWCAAHPDEVPFALHHL
Ga0137378_110918881	3300012210	Vadose Zone Soil	MRDPEIIEAELIEISAMADDTLKLERIIAWCASHPDEVPFALHQLR
Ga0137385_101648202	3300012359	Vadose Zone Soil	MRDPEVIESELIEISAIADDTLKLERIIAWCASHPDEIPFA
Ga0164301_113193842	3300012960	Soil	MRDPEIIETELMEISAIADDTVKFERIIAWCAAHPDE
Ga0126369_100909773	3300012971	Tropical Forest Soil	MRDPAEIEKELMEISAIAEDGTKLEWIIAWCANHPDEVPFALKILMSRS*
Ga0163162_121479791	3300013306	Switchgrass Rhizosphere	MRDPEVIEAELMEISGTADDTIKLERIIAWCASHPD
Ga0181521_106260601	3300014158	Bog	MRDPETIETELMEISAIAEDTVKFERIVAWCATHPDEVPF
Ga0181528_104688483	3300014167	Bog	MRDSEIIETELMEIGAIPDDALKLERIISWCAMHPEEVPFALHQLLG
Ga0182018_105902292	3300014489	Palsa	MREPEQIEEELFEIAGMADDGTKLEQIIAWCATHPD
Ga0182010_100520921	3300014490	Fen	MRDADIIETELTEISAIADDTLRFERIIVWCASNPDDVPFA
Ga0182013_102893601	3300014492	Bog	MRDPETIETELMEIGAIADDTLKLERIIAWCASHPDEVPFALHQ
Ga0182016_102284341	3300014493	Bog	MRDLEIIEAELMEISAIADDSIKLERIIAWCASHPDEVP
Ga0182017_103045684	3300014494	Fen	MRDAETIETELMEISAIADDSVKLERIIAWCACYP
Ga0182011_107749532	3300014496	Fen	MRDPETIETELMEISAIADDAVKLERIIAWCSCHPD
Ga0182019_101262872	3300014498	Fen	MRDPEVIETELMEISAIADDSVKFERIVAWCATHPDEVPF
Ga0182012_109107242	3300014499	Bog	MRDPEIIETELMEISAIPDDTLKFERIIAWCASHPDEVPF
Ga0182021_134115672	3300014502	Fen	MRDLEIIEAELMEISAIADDSVKLERIIAWCASHP
Ga0182030_104554893	3300014838	Bog	MRDPETIEQELVGIGAIADDSTKLERIIAWCASHPD
Ga0182027_102336461	3300014839	Fen	MRDPESIETELMEISAIADDSVKFERIVVWCATHPDEVPFALHQLL
Ga0182027_108762142	3300014839	Fen	MRDPETIETELMEISAIADDAVKLERIIAWCSCHPDEVPFALHQLMN
Ga0182027_109882441	3300014839	Fen	MRDPETIETELMEISAIADDAVKLERIIAWCACHPDEVPFAL
Ga0132255_1041742901	3300015374	Arabidopsis Rhizosphere	MRDPEIIETDLMEISAIADDLVKFERIVAWCASHPDEVPF
Ga0182034_107416541	3300016371	Soil	VCHADFMRDPEIIDTELMEISAITDDVVKLERIIAWCASHPDEVPF
Ga0187848_103438461	3300017935	Peatland	MRDSEIIETELMEISAIAEDTVKFERIVAWCATHPDEVPFALHQ
Ga0181520_101988941	3300017988	Bog	MRDPEIIEAELMEISAIADDSIRFERIVAWCATYPDEVPFALHQWM
Ga0181520_109245592	3300017988	Bog	MRDPESIETELMEISAIADESIKLERIIAWCASYPDEVLFAL
Ga0187878_13367692	3300018005	Peatland	MRDPEIIETELMEISAIAEDTVKFERIVAWCATHPDEVP
Ga0187888_12789751	3300018008	Peatland	MRDSEIIETELMEISAIAEDTVKFERIVAWCATHPDEVPFAL
Ga0187874_103617611	3300018019	Peatland	MRDPEIIETELMEISAIAEDTTKFERIIAWCATHPDEVPFVLHQFM
Ga0187857_101010922	3300018026	Peatland	MRDPEIIETELMEISAIAEDTVKFERIVAWCATHPDEV
Ga0187863_104636371	3300018034	Peatland	MRDPEIIEAELVEISGIADDSVKLERIVTWCATHPDEVPFA
Ga0184628_101470231	3300018083	Groundwater Sediment	MRDPEIIETDLMEISSIADDLVKFERIVAWCASHPDEVPFA
Ga0182031_12839023	3300019787	Bog	MRDLEIIEAELMEISAIADDSIKLERIIAWCASHPDEVPVALH
Ga0182028_13527965	3300019788	Fen	MRDPEAIETELMEISAIADDSVKFERIVAWCATHPDEVPSPCIRSWA
Ga0182028_13654913	3300019788	Fen	MRDLEIIEAELMEISAIADDSIKLERIIAWCASHPTKSPSHCISS
Ga0210405_111736101	3300021171	Soil	MREPETIENELIEIGAIPDDLVKFERIVAWCAAHPDEVPF
Ga0213874_104209611	3300021377	Plant Roots	MRDPEIIEEELVEISAIADDTVKFDRIIAWCAAHPDEV
Ga0210402_109241331	3300021478	Soil	MRDPEVIESELIEISAIADDTLKLERIIAWCTAHPDEIPFALHQ
Ga0210409_115253511	3300021559	Soil	MRDPEIIENELMEISAIADDSLKLERIIAWCATHPNEVP
Ga0126371_133909632	3300021560	Tropical Forest Soil	MRDPETIETELMEISAIPDDLVKLERIVAWCAAHPDEVPF
Ga0213853_104175872	3300021861	Watersheds	MRQPDVIEAELAEISGIAEDETKFERIVAWVATHPD
Ga0224555_11996501	3300023088	Soil	MRDPETIETELMEISSIVDDAVKFERVVTWCATHPDEVPFALHQ
Ga0224559_10770152	3300023091	Soil	MRNPEIIETELMEISAIFDDTVKFERIIAWCASHPDE
Ga0209511_11561522	3300025147	Glacier Valley	MRDAEAIESELLEISAIPDDSNKLERIITWCATHPD
Ga0208190_10446282	3300025473	Peatland	MRDPEIIETELMEIGAIADDTLKLERIIAWCASHPD
Ga0208686_10885031	3300025500	Peatland	MRDPETIETELMEISAIADDAVKLERIIAWCACHPD
Ga0207646_116359802	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MRDPEIIEAELVEISAIADDTIKFERIIAWCAAHPDEVAFALHQL
Ga0207687_103081961	3300025927	Miscanthus Rhizosphere	MRDLQVIEAELVEIGAISDDSLKLERIIAWCATYPDEVPFAIRLLLDR
Ga0207664_119771562	3300025929	Agricultural Soil	MRDPEIIEAELIEISAIADDSLKFERIVAWCTAHPDE
Ga0207703_112050012	3300026035	Switchgrass Rhizosphere	MLVFMRDTEIIETDLMEISAIADDSTKFERILAWCAAHPDEIP
Ga0207641_110423072	3300026088	Switchgrass Rhizosphere	MRDPQVIEAELVEIGAISDDSLKLERIIAWCATYPDEVPFAIRLLL
Ga0209863_100087441	3300026281	Prmafrost Soil	MRDPEIIETELMEISAIADDTVKLERIIAWCASHPDEVPFALHQLMG
Ga0209517_106845801	3300027854	Peatlands Soil	MGAPEIIETELMEISALAEDTVKFERIVAWCATHPDEVPFALHQL
Ga0209167_100425133	3300027867	Surface Soil	VCHAEVSMRDPEIIETELMEISAIADDTIKFERIIAWCASHPDEVPFA
Ga0209698_102155672	3300027911	Watersheds	MRDLDTVESELFEISAIPEDGLKLERIIAWCATHPDEVPMAIHLLLVRRNAETPKE
Ga0209168_101469821	3300027986	Surface Soil	MRDAEIIEAELMEISAIVDDTVKLERIIAWCASYPDEV
Ga0302274_103164051	3300030041	Bog	MRDLEIIEAELMEISAIADDSVKLERIIAWCASHPDE
Ga0311355_117600272	3300030580	Palsa	MRNPEVIEAELMEISAIADDSTKLERIVTWCATHPDEVPF
Ga0302324_1023148982	3300031236	Palsa	MRDSETIETELMEISAVADDTLKLERIIAWCASHPDEVPFALHQI
Ga0265332_101501892	3300031238	Rhizosphere	MRDPEIIETELMEISAIADDAVKLERIVAWCAMRPDEV
Ga0265331_103603911	3300031250	Rhizosphere	MRAPEIIETELMEISAIAEDTVKFERIVVWCATHP
Ga0302187_101205972	3300031259	Bog	MRDPEIIETELMEISAIAEDTVKFERIVAWCATHPDEVPF
Ga0310686_1109187911	3300031708	Soil	MRDPETIETELMSISAIADDSTKLERIIAWCATHPDEVPFALH
Ga0310813_117870661	3300031716	Soil	MRDPEVIEAELMEISGTADDTIKLERIIAWCASHPDEVPFALHQLL
Ga0318554_108424522	3300031765	Soil	MRDPETIETELMEISAIADDAVKLERIIAWCAAHPDEVPFA
Ga0318567_101933621	3300031821	Soil	MRDPEIIDTELMEISAITDDVVKLERIIAWCASHPDEVPF
Ga0308175_1016244243	3300031938	Soil	MRDPEVIENELMEISAIADESIKFERIVAWCASHPDEVPF
Ga0308175_1017562991	3300031938	Soil	MCHPKVAMRAPEIIEAELMEIGAIADDTIKLERIIAWCASHPD
Ga0308175_1026839011	3300031938	Soil	MRDPETIETELMEISAITDDVVKLERIIAWCAIHPDEV
Ga0308174_101881271	3300031939	Soil	MRDPEIIETELMEIGSIADDGVKLERLIAWCASHPDEV
Ga0308176_103708022	3300031996	Soil	MRDPEVIEAELMEISGIAEDENKLERIIAWCATHPDEVPFALKI
Ga0318524_105166292	3300032067	Soil	MRDAETIETELVEIAAIPDDLVKLERIITWCAVHPDEVPFAL
Ga0308173_106947462	3300032074	Soil	MRRDQQIVEAELMEISAIQDDSVKLERLVAWCANYPDEILFAL
Ga0306924_101110291	3300032076	Soil	MRDPEIIDTELMEISAIADDGVKLERLIAWCAAHP
Ga0307471_1000739493	3300032180	Hardwood Forest Soil	MRDPEIIEAELTEISAIADDTVKLERIIAWCATHPDEVAFALHQFM
Ga0335085_120210461	3300032770	Soil	MRDPEIIEGELIEISALADDTLKLERIIAWCAAHHDEIPFALHM
Ga0335082_115672681	3300032782	Soil	MRPPEVIEADLMEISAVLDDAVKLERIIAWCAAHPDEVPFAL
Ga0335079_105652581	3300032783	Soil	MRDPETIETELMEISAIADESIKLERIIAWCASHPDEVPFA
Ga0335078_101593311	3300032805	Soil	MRDSEIIETELMEISAIADDSIKLERIIAWCASHPDEVP
Ga0335078_117363592	3300032805	Soil	MRDPQIIDAELMEIAALADDTLKFERLVAWCASHP
Ga0335074_110776712	3300032895	Soil	MRDPQVIEEELIEIGAIADDTIKFERIVAWCATHPDEVPLALHMF
Ga0335071_116340043	3300032897	Soil	MRDPETIEAELMEISAIADDAVKLERIVAWCAWHPDEVPFAL
Ga0335071_121556451	3300032897	Soil	MRDPEIIETELMEISAIADDSIKLERIIAWCASHPDEVPF
Ga0335083_100799291	3300032954	Soil	MRPPEVIEADLMEISAVLDDAVKLERIIAWCAAHPD
Ga0335077_100531503	3300033158	Soil	MRDSEIIETELMEISAIADDSIKLERIIAWCASHPDEVPMPCISS
Ga0326728_103914981	3300033402	Peat Soil	MRDPETIETELMEIGAIAEDAVKLERIIAWCACHPD
Ga0316628_1022585811	3300033513	Soil	MRDPETIEPELMEISSIADDLGKFERVVAWCAAHPDEVPSPC
Ga0334811_139611_2_124	3300033891	Soil	MRDAEIVEAELMEISAIADDSIKFERIVAWCATYPEEVPFA
Ga0370497_0169754_1_123	3300034965	Untreated Peat Soil	MRDPETIDTELMEISAITDDVLKLERIITWCATHPDEVPFA