Basic Information | |
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Family ID | F079152 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 116 |
Average Sequence Length | 45 residues |
Representative Sequence | MAANAEIFFEHDRWGRNLTWSLGLHIAVAGAIVLYAVVAP |
Number of Associated Samples | 103 |
Number of Associated Scaffolds | 116 |
Quality Assessment | |
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Transcriptomic Evidence | Yes |
Most common taxonomic group | Unclassified |
% of genes with valid RBS motifs | 45.69 % |
% of genes near scaffold ends (potentially truncated) | 100.00 % |
% of genes from short scaffolds (< 2000 bps) | 87.93 % |
Associated GOLD sequencing projects | 100 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.57 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Unclassified (50.862 % of family members) |
NCBI Taxonomy ID | N/A |
Taxonomy | N/A |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (15.517 % of family members) |
Environment Ontology (ENVO) | Unclassified (18.966 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (56.897 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66. |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Transmembrane (alpha-helical) | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 45.59% β-sheet: 0.00% Coil/Unstructured: 54.41% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.57 |
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Visualization |
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All Organisms Unclassified |
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Visualization |
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Groundwater Sediment Bog Forest Soil Bog Freshwater Sediment Iron-Sulfur Acid Spring Watersheds Soil Vadose Zone Soil Tropical Forest Soil Surface Soil Peatlands Soil Soil Agricultural Soil Permafrost Soil Grasslands Soil Soil Hardwood Forest Soil Soil Rice Paddy Soil Peatland Tropical Peatland Bog Forest Soil Soil Palsa Permafrost Soil Forest Soil Soil Corn, Switchgrass And Miscanthus Rhizosphere Switchgrass Rhizosphere Agricultural Soil Fen Palsa Switchgrass Rhizosphere Switchgrass Rhizosphere Miscanthus Rhizosphere Miscanthus Rhizosphere Switchgrass Rhizosphere Corn Rhizosphere |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
INPhiseqgaiiFebDRAFT_1017493513 | 3300000364 | Soil | MPASTEIFFEHDRWGRNLSWSAVLHIGVAASIVAYAVIAPANRGEGWGAGGGGDAIGVTL |
JGI12635J15846_101174181 | 3300001593 | Forest Soil | MEANAEIFFEHDQWGRNLAWSVALHIAVVASIILYAVVAPGGSGSTWGAGG |
C688J18823_108105491 | 3300001686 | Soil | MESHAEIFFEHERWGRNLAWSVGLHVLVAGCIVGYAIVAPASRGSDWGAGGGGDA |
Ga0062384_1006781711 | 3300004082 | Bog Forest Soil | MEANAEIFFEHDRWGRNLAWSAGLHVAVAVCIILYAVIWHGGSGSAWGAGG |
Ga0062384_1007006073 | 3300004082 | Bog Forest Soil | METNAEIFFEHDRWGHNVAWSVALHILVAGSIVLYAAVASGGRRETWGIGG |
Ga0062387_1008287313 | 3300004091 | Bog Forest Soil | MAANAEIFFEHDRWGRNLTWSLGLHIAVAGAIVLYAVVAP |
Ga0062387_1010967712 | 3300004091 | Bog Forest Soil | MAASAEIFFEHERWGRNLAWSAGFHVAIAVCIIGYAVVVHTGGGTWGTGGG |
Ga0062590_1012458141 | 3300004157 | Soil | MASSAEIFFEHDRWARNLTWSAVLHVAIAAAIVGYAVFAPSNSGSGWGAG |
Ga0062592_1025994261 | 3300004480 | Soil | MAANAEIFFEHDRWGRNLSWSLGLHIAIAGAIVLYAVVAPSSSGE |
Ga0070711_1010494681 | 3300005439 | Corn, Switchgrass And Miscanthus Rhizosphere | MAANAEIFFEHDRWGRNLTWSLVLHVAVAGSILLYAVVLPSRH |
Ga0066689_103529791 | 3300005447 | Soil | MAANAEIFFEHGPWGRALAWSVGLHVAFAAFIVLYAVIIPATS |
Ga0070663_1000184841 | 3300005455 | Corn Rhizosphere | MAANAEIFFEHDRWGRNLSWSLGLHIAIAGAIVLYAVVAPSSSGEGWG |
Ga0073909_106033552 | 3300005526 | Surface Soil | MAANAEIFFEHDRWGRNLTWSLVLHIAVAGFILLYAVVI |
Ga0070697_1015388002 | 3300005536 | Corn, Switchgrass And Miscanthus Rhizosphere | MAANAEIFFEHDRWGRNLTWSLVLHLAVAGSILLYAVVAPSSHGEGWGAGGG |
Ga0070733_106398991 | 3300005541 | Surface Soil | MDPNAEIFFEHDRWGRNLAWSAGFHVAVAGAIVLYA |
Ga0070733_108815022 | 3300005541 | Surface Soil | MAATEIFFEHDQWGRNLAWSAGLHTAVVAVIVFWAVVLPGSHGSDWG |
Ga0070695_1000921214 | 3300005545 | Corn, Switchgrass And Miscanthus Rhizosphere | MAANAEIFFEHDRWGRNLSWSLGLHIAIAGAIVLYAVVAPSSSGEGWGAGGGG |
Ga0066705_100113478 | 3300005569 | Soil | MAANAEIFFEHERWGRNLTWSLILHIAVAGSIILYAAVV |
Ga0068858_1013448583 | 3300005842 | Switchgrass Rhizosphere | MPASTEIFFEHDRWGRNLSWSAVLHIGVAASIVAYAVIAPANRGEGWGAGGG |
Ga0075283_10578433 | 3300005891 | Rice Paddy Soil | MAANAEIFFEHGDLGKPLAWSVALHIAFTLAIIGYAVIVPGGTGETWGAG |
Ga0070766_100703024 | 3300005921 | Soil | MEANAEIFFEHDNWARNLAWSAVLHLAVAGSIILYAVVWHGSGGS |
Ga0075028_1003596401 | 3300006050 | Watersheds | MEANAEIFFEHERWGRNLTWSLALHVAVAGSIILY |
Ga0075015_1003820113 | 3300006102 | Watersheds | MAANAEIFLEHGEWRKPLTWSAVLHVAVTGAIVLYAT |
Ga0075018_106733592 | 3300006172 | Watersheds | MAANAEIFFEHDRWGRNLTWSLGLHIAITGAIVLYAVVVPSSHGE |
Ga0079221_117550801 | 3300006804 | Agricultural Soil | MAAAEIFFEHERWGRNLAWSAGFHLVVATSILAYSVIAPGGRGEG |
Ga0079220_104626973 | 3300006806 | Agricultural Soil | MAANAEIFFEHDRWGRNLSWSLGLHLAIAGAIVLYAVVAPSSSGEGWGAGGGGDA |
Ga0073928_109286102 | 3300006893 | Iron-Sulfur Acid Spring | MEANAEIFFEHDQWGRNLAWSVALHIAVVASIILYAVVAPGGS |
Ga0066710_1000450681 | 3300009012 | Grasslands Soil | MAANAEIFFEHGPWGRALAWSVGLHVAFAAFIVLYAVIIPATSGQGWGA |
Ga0099830_116267071 | 3300009088 | Vadose Zone Soil | MQASAEIFFEHERWGRNLAWSAGLHVAVVGTIILYAAFASGGRGQG |
Ga0099827_102977161 | 3300009090 | Vadose Zone Soil | MAANAEIFFEHERWGHNLAWSLALHVVVTGGILLYSTI |
Ga0116222_10639604 | 3300009521 | Peatlands Soil | MEANAEIFFEHDRWVRNLTWSVALHLAVAGSIVLYAVIAHGGSGSTWGAGG |
Ga0116222_13651812 | 3300009521 | Peatlands Soil | MAANAEIFFERDSWGRNLAWSAGLHVVFTAAIVLYAMISPGGES |
Ga0116217_109893062 | 3300009700 | Peatlands Soil | MAANAEIFFEHDRWGRNLAWSAGLHVAIAGSIVLYAVF |
Ga0074046_103486761 | 3300010339 | Bog Forest Soil | MEANAEIFFEHDRWGRNLAWSVALHAAVAGSIVLYALIGPGGHGSTWGAG |
Ga0126376_104791201 | 3300010359 | Tropical Forest Soil | MANAEIFFEHERWGRNLSWSLGLHIGIAAAIVLYAALANSRNSTW |
Ga0105246_100398511 | 3300011119 | Miscanthus Rhizosphere | MAANAEIFFEHDRWGRNLSWSLGLHIAIAGAIVLYA |
Ga0105246_125744842 | 3300011119 | Miscanthus Rhizosphere | MASSAEIFFEHDRWARNLTWSAVLHVAIAAAIVGYAVFAPSNSG |
Ga0150983_134322071 | 3300011120 | Forest Soil | MAANAEIFFEHDRWSRNLAWSAALHIAVAGSIVLYAVVGPGGSGSNW |
Ga0137388_108826103 | 3300012189 | Vadose Zone Soil | MAANAEIFFEHDRWGRNLTWSLGLHIAIAGAIVLYAVVAPSSHGEGWGAGGGG |
Ga0137376_118091081 | 3300012208 | Vadose Zone Soil | MAAAEIFFEHERWGRNLAWSAGFHIAIAASILAYTVIAPGSR |
Ga0137386_101923641 | 3300012351 | Vadose Zone Soil | MAANAEIFFEHGPWGRALAWSVGLHVAFAAFIVLYAVIIPATSGQGWGAG |
Ga0137397_109860173 | 3300012685 | Vadose Zone Soil | MAANAEIFFEHDRWGRNLTWSLGLHIAIVGAIVLYAVV |
Ga0137416_107887371 | 3300012927 | Vadose Zone Soil | MAANAEIFFEHGPWGRALAWSVGLHMAFAAFIVLYAVIIPATSGQGWGAGGGGEAM |
Ga0164308_105759081 | 3300012985 | Soil | VASAEIYFEHDRWGRNLTWSLVLHIAVAGFILLYAVV |
Ga0157378_127451161 | 3300013297 | Miscanthus Rhizosphere | MAANAEIFFEHDRWGRNLTWSLGLHIAIAGAIVLYAVVAPNSHGDSW |
Ga0120127_100614602 | 3300013503 | Permafrost | MATAEIFFEHERWGRNLAWSAGFHLAVAASILAYSVIAPASRGEGWGAGGGGDAIGVTLV |
Ga0181532_102392963 | 3300014164 | Bog | MEANAEIFFEHDKWGRNLAWSAGLHIAVAGSIILYAAVASSGKGSA |
Ga0182018_104929683 | 3300014489 | Palsa | MAANAEIFFEHDRWGRNLAWSLTLHLAVVVAIVLYTVIAPGGGTTWG |
Ga0181525_100305164 | 3300014654 | Bog | MEANAEIFFEHERWGRALGWSAAFHVAVAAVILVYTMVA |
Ga0137411_12658171 | 3300015052 | Vadose Zone Soil | MAANAEIFFEHDRWGRNLTWTWSLGLHIAIVGAIVLYAVVAPGSHG |
Ga0187802_102019741 | 3300017822 | Freshwater Sediment | MESNAEIFFEHDRWGHNLGWSVALHIAVAGSIVLYA |
Ga0187819_101048271 | 3300017943 | Freshwater Sediment | MEANAEIFFEHDRWGRNLGWSVALHAAFAGFVVLYTVVVPGGHGGTWGA |
Ga0187778_106505293 | 3300017961 | Tropical Peatland | MAANAEIFFEHDRWGRNLVWSVALHAAFTAGVFLFAYFSGGH |
Ga0187781_111827661 | 3300017972 | Tropical Peatland | VAASAEIFFEHDRWGRALTWSLVLHIAVVSGLFGYAAVLGGHGG |
Ga0187782_106669371 | 3300017975 | Tropical Peatland | MAASSEIFLEHDRWGRNLAWSASLHLAVAGAIVLYTVVVPPGRGSEWGAGGGGDALGATLVNSVP |
Ga0187816_103341763 | 3300017995 | Freshwater Sediment | MEANADIFFEHDRWGRNLAWSVGLHIAVAGSIVLYAVIGPGGHGSTWGAG |
Ga0187816_105065671 | 3300017995 | Freshwater Sediment | MEANAEIFFEHDRWGRNLAWSVGLHLAVAGAIILYAVIGPSGSGST |
Ga0187804_101627601 | 3300018006 | Freshwater Sediment | MSANAEIYFEHDRWGRNLGWSVVLHIGVAASIVAYAIFAPA |
Ga0187804_104653182 | 3300018006 | Freshwater Sediment | MEANAEIFFEHDRWGRNLAWSVGLHLAVAGSIILYAVFAHGGS |
Ga0187769_105971693 | 3300018086 | Tropical Peatland | MQANTEIFFEHDRWGRNLTWSLALHMAVTGAILLY |
Ga0187770_105099843 | 3300018090 | Tropical Peatland | MAASTEIFLEHDRWGRNLAWSAGLHIAVAGAIVFYTVVVPAGRGSEW |
Ga0187770_112069703 | 3300018090 | Tropical Peatland | MEANAEIFFEHDRWGRNLAWSAGLHVAVAGCIVLYAMIA |
Ga0187800_18341891 | 3300019278 | Peatland | MAASTEIFLEHDRWGRNLAWSAGLHIAVAGAIVFYTVVVPAGRGSE |
Ga0187797_12336713 | 3300019284 | Peatland | MAANAEIFFEHDRWGRNLVWSVALHAAFTAGIFLF |
Ga0182025_10027291 | 3300019786 | Permafrost | MAASAEIFFEHERWGRNLAWSVGLHIGIAACIILYAVVIHSSG |
Ga0210407_111156682 | 3300020579 | Soil | MATNAEIFFEHDRWGHNVAWSVGLHVVVAGCIVLYAAVAS |
Ga0210399_111659621 | 3300020581 | Soil | MATNAEIFFEHDRWGHNVAWSVALHVVVAGGIVLYASVASGGRRE |
Ga0210399_112907132 | 3300020581 | Soil | MEANAEIFFEHDNWFRNLAWSVALHIAVAGSIILYAVVWHGGG |
Ga0210401_101615711 | 3300020583 | Soil | MEPNTEIFFEHDRWGHNVAWSVALHLVVAGCIVFYAAVVTGGRR |
Ga0210382_104288231 | 3300021080 | Groundwater Sediment | MAANAEIFFEHDRWGRNLTWSLVLHLAVAGFILLYAVVIPSSHG |
Ga0210406_108445843 | 3300021168 | Soil | MEANAEIFFEHDRWARNLTWSVVLHLAVAGSIVAYAVVGPGGGGSTWGA |
Ga0210405_101970191 | 3300021171 | Soil | MEANAEIFFEHDKWGRNLAWSAGLHLAVAGSIILYAAVASGGKGSAWGAGGG |
Ga0210408_103079603 | 3300021178 | Soil | MAANAEIFFEHGPWGRALAWSVGLHVAFAAFIVLYA |
Ga0210408_105833761 | 3300021178 | Soil | MEANAEIFFEHDRWGRNLTWSLVLHIAVAGGILLYAVVAPSSHGEGWGAGGGGD |
Ga0210388_113432231 | 3300021181 | Soil | MANNAEIFFEHDNWGRNLAWSAGLHVAVAASITLYALVWHGGTGSTWGAG |
Ga0210397_110384901 | 3300021403 | Soil | MAANAEIFFEHDRWGRNLAWSAGLHIAIAGSIVLYAVIGPGGH |
Ga0210383_107544231 | 3300021407 | Soil | METNAEIFFEHDRWGHNVAWSLGLHVAVAGCVVLYAAVASGGRRE |
Ga0210394_106261991 | 3300021420 | Soil | MEANAEIFFEHDRWGRNLAWSVALHIAVAASIIVYAVVGPG |
Ga0210394_113157583 | 3300021420 | Soil | MAANAEIFFEHDRWGRNLTWSLGLHIAIAGAIVLY |
Ga0210384_114268751 | 3300021432 | Soil | MAANAEIFFEHDRWGRNLAWSAGLHIAIAGFIVLYAVFGP |
Ga0210392_102588013 | 3300021475 | Soil | MEANAEIFFEHDNWFRNLAWSVALHIAVAGSIILYAVV |
Ga0210402_112541143 | 3300021478 | Soil | MAANAEIFFEHDRWGRNLTWSLGLHIAIAGAIVLYAVVAPSSHGEGWGAG |
Ga0210410_100715864 | 3300021479 | Soil | MEANAEIFFEHERWGRALGRSAAFHVAVAAVILVYTM |
Ga0210409_1001375111 | 3300021559 | Soil | MEANAEIFFEHDNWVRNLAWSVGLHIAVAGSIILYAVVWHGS |
Ga0212123_106932841 | 3300022557 | Iron-Sulfur Acid Spring | MEANAEIFFEHDQWGRNLAWSVALHIAVVASIILYAVVA |
Ga0207416_11079091 | 3300025134 | Iron-Sulfur Acid Spring | MEANAEIFFEHDQWGRNLAWSAGLHVAVAAAIILY |
Ga0207710_106091651 | 3300025900 | Switchgrass Rhizosphere | MAANAEIFFEHDRWGRNLSWSLGLHVAVVGAILLYA |
Ga0207680_100160888 | 3300025903 | Switchgrass Rhizosphere | MAANAEIFFEHDRWGRNLSWSLGLHIAIAGAIVLYAVVAPSSSGEGWGAGGGGDA |
Ga0207663_112059091 | 3300025916 | Corn, Switchgrass And Miscanthus Rhizosphere | MAANAEIFFEHDRWGRNLTWSLVLHVAVAGSILLYAVVLPSRHGEGWG |
Ga0207646_101563844 | 3300025922 | Corn, Switchgrass And Miscanthus Rhizosphere | MAANAEIFFEHDRWGHNLAWSLALHVVVTGGILLYSTIASGGRGEGWGA |
Ga0207646_114746462 | 3300025922 | Corn, Switchgrass And Miscanthus Rhizosphere | MAANAEIFLEHDRWGRNLAWSGALHIAVAGSILLYAVIAPGSRGEGWGAG |
Ga0207664_119744122 | 3300025929 | Agricultural Soil | MAANAEIFFEHDRWGRNLAWSLVLHAAVTGAILLYAVVIP |
Ga0207670_109833841 | 3300025936 | Switchgrass Rhizosphere | MAANAEIFFEHDRWGRNLSWSLGLHIAIAGAIVLYAVVAPSSSGEGWGAGGGGDAM |
Ga0207665_107461581 | 3300025939 | Corn, Switchgrass And Miscanthus Rhizosphere | MEANAEIFFEHDRWGRNLSWSLVLHLAVAGGILLYAVVVPGSHGESWGAGGGGDAMGV |
Ga0209838_10248153 | 3300026214 | Soil | MAASAEIFFEHERWGRNLAWSAGFHVAIAVCIIGYAVVAHT |
Ga0209890_102523071 | 3300026291 | Soil | MAANAEIFFEHDRWGRNLSWSVGLHIAIAGSILLYAVVAPSSHGDGWGA |
Ga0208043_11636361 | 3300027570 | Peatlands Soil | MEANAEIFFEHDRWVRNLTWSVALHLAVAGSIVLYAVIAHGGSGSTWGA |
Ga0209528_10920581 | 3300027610 | Forest Soil | MAANAEIFFEHERWGRALAWSVGLHLAIASSLLLYSAVFSGP |
Ga0209528_10935601 | 3300027610 | Forest Soil | MAANAEIFFEHGPWGRALAWSVGLHVAFAAFIVLYAVIIPASSGQSWGAGG |
Ga0209076_11860582 | 3300027643 | Vadose Zone Soil | MAAAEIFFEHERWGRNLAWSAGFHVAVAASILAYAV |
Ga0209420_10282534 | 3300027648 | Forest Soil | MEANAEIFFEHDNWGRNLAWSAGLHIAVAGSIILYAMVVSGGKG |
Ga0209217_11148891 | 3300027651 | Forest Soil | MEANAEIFFEHDRWGRNLSWSLALHLAVVGGIVAYAVVAPGSSGQGWGAGG |
Ga0209139_101961971 | 3300027795 | Bog Forest Soil | MAGNAEIFFEHDHWGRNLAWSAGLHVAVAGCIVLYAVIWHGSGGST |
Ga0209275_108959921 | 3300027884 | Soil | MEANAEIFFEHDKWGRNLAWSAGLHLAVAGSIILYAAVASGGKGSAWGAG |
Ga0209069_106668283 | 3300027915 | Watersheds | MAANAEIFFEHDRWGRNLTWSLGLHIAIAGAIVLYA |
Ga0265350_1069112 | 3300028013 | Soil | MEANAEIFFEHERWGRALGWSAAFHAAVAAVILVY |
Ga0311350_110446391 | 3300030002 | Fen | MPANPEIFFEHDRWGHNLAWSLGLHVTVAVAILVYAVVA |
Ga0265762_10468061 | 3300030760 | Soil | MEANAEIFFEHERWGRALGWSAAFHVAVAVVILVYTMVAT |
Ga0265760_100027358 | 3300031090 | Soil | MEANAEIFFEHDNWFRNLAWSVALHVAVAGSIILYAVVWHGSGG |
Ga0302307_103826591 | 3300031233 | Palsa | MEANAEIFFEHERWGRALGWSAAFHVAVAAVILVYAMVA |
Ga0307479_111997603 | 3300031962 | Hardwood Forest Soil | MAANAEIFFEHGPWGRALAWSVGLHVAFAAFIVLYAVIIP |
Ga0311301_107517013 | 3300032160 | Peatlands Soil | MAANAEIFFEHERWGRALAWSAGLHIAITGAVLLWSVVFT |
Ga0310812_104780262 | 3300032421 | Soil | MAANAEIFFEHGAWGKPLAWSVGLHVAFTVFVVLWAVVVHPTVGSGWGGG |
Ga0335080_102052861 | 3300032828 | Soil | MEANAEIFFEHDRWGRNLAWSTALHIAVAGAIVAYTVIAPSSGGGSWG |
Ga0335070_113805103 | 3300032829 | Soil | MANHAEIFFEHDRWGRNLAWSAALHVGFAGFVVLYTAMIHGGRGGAWGAGG |
Ga0335076_112833181 | 3300032955 | Soil | MAASAEIFFEHDSWGRNLAWSLVLHVAVTGGILLY |
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