Metagenome / Metatranscriptome Family F079123

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F079123
Family Type	Metagenome / Metatranscriptome
Number of Sequences	116
Average Sequence Length	105 residues
Representative Sequence	MVDSTHCMHCNAPLIEIDFYGEGMAGCIECNRWTRDGWLFIDLPEEDIEALRADREPKTIAEFLELKTASTMLRDDGWYAYYKDEKPLGPFATEAEAARAGLEVWVKKTK
Number of Associated Samples	106
Number of Associated Scaffolds	116

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	60.87 %
% of genes near scaffold ends (potentially truncated)	42.24 %
% of genes from short scaffolds (< 2000 bps)	82.76 %
Associated GOLD sequencing projects	94
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.46

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (90.517 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (18.103 % of family members)
Environment Ontology (ENVO)	Unclassified (39.655 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (66.379 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 26.09% β-sheet: 21.01% Coil/Unstructured: 52.90%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.46
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.46
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 116 Family Scaffolds
PF14234	DUF4336	3.45
PF14248	DUF4345	1.72
PF07486	Hydrolase_2	1.72
PF04466	Terminase_3	1.72
PF00106	adh_short	0.86
PF08281	Sigma70_r4_2	0.86
PF04185	Phosphoesterase	0.86
PF02357	NusG	0.86
PF02910	Succ_DH_flav_C	0.86

COG ID	Name	Functional Category	% Frequency in 116 Family Scaffolds
COG1783	Phage terminase large subunit	Mobilome: prophages, transposons [X]	1.72
COG3773	Cell wall hydrolase CwlJ, involved in spore germination	Cell cycle control, cell division, chromosome partitioning [D]	1.72
COG0250	Transcription termination/antitermination protein NusG	Transcription [K]	0.86
COG3511	Phospholipase C	Cell wall/membrane/envelope biogenesis [M]	0.86

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	91.38 %
Unclassified	root	N/A	8.62 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	90.52 %
Unclassified	root	N/A	8.62 %
Viruses	superkingdom	All Organisms → Viruses	0.86 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	90.52 %
Unclassified	root	N/A	8.62 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.86 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	83.62 %
Unclassified	root	N/A	8.62 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.86 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	76.72 %
Unclassified	root	N/A	8.62 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.86 %

Name	Rank	Taxonomy	Distribution
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	72.41 %
Unclassified	root	N/A	8.62 %
Rhodobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	0.86 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.86 %

Name	Rank	Taxonomy	Distribution
unclassified Hyphomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales	59.48 %
Unclassified	root	N/A	8.62 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	3.45 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.86 %
Rhodobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae	0.86 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.86 %

Name	Rank	Taxonomy	Distribution
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	59.48 %
Unclassified	root	N/A	8.62 %
Methyloceanibacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	2.59 %
unclassified Hyphomicrobiaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae	0.86 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.86 %
Rhodobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae	0.86 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.86 %

Name	Rank	Taxonomy	Distribution
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	59.48 %
Unclassified	root	N/A	8.62 %
Methyloceanibacter caenitepidi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter caenitepidi	1.72 %
Hyphomicrobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	0.86 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.86 %
Rhodobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae	0.86 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.86 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2170459019\|G14TP7Y01B2QNB	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	522	Open in IMG/M
3300000955\|JGI1027J12803_101198005	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	694	Open in IMG/M
3300001990\|JGI24737J22298_10204739	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	582	Open in IMG/M
3300004114\|Ga0062593_101299000	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	771	Open in IMG/M
3300004463\|Ga0063356_101327022	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1054	Open in IMG/M
3300004479\|Ga0062595_100085388	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1615	Open in IMG/M
3300004479\|Ga0062595_100691503	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	817	Open in IMG/M
3300004643\|Ga0062591_100878221	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	838	Open in IMG/M
3300004798\|Ga0058859_11676089	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1140	Open in IMG/M
3300005328\|Ga0070676_10089187	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1886	Open in IMG/M
3300005331\|Ga0070670_100297227	Not Available	1412	Open in IMG/M
3300005333\|Ga0070677_10729590	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	560	Open in IMG/M
3300005334\|Ga0068869_101376979	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	624	Open in IMG/M
3300005335\|Ga0070666_10137133	All Organisms → cellular organisms → Bacteria → Proteobacteria	1703	Open in IMG/M
3300005337\|Ga0070682_100370554	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1074	Open in IMG/M
3300005339\|Ga0070660_100704876	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae	846	Open in IMG/M
3300005341\|Ga0070691_10000642	All Organisms → cellular organisms → Bacteria → Proteobacteria	13505	Open in IMG/M
3300005341\|Ga0070691_10821742	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	567	Open in IMG/M
3300005344\|Ga0070661_100006170	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	8260	Open in IMG/M
3300005347\|Ga0070668_100061314	All Organisms → cellular organisms → Bacteria	2913	Open in IMG/M
3300005367\|Ga0070667_101157641	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	723	Open in IMG/M
3300005406\|Ga0070703_10198487	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	786	Open in IMG/M
3300005441\|Ga0070700_100038820	All Organisms → cellular organisms → Bacteria	2904	Open in IMG/M
3300005445\|Ga0070708_100580509	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1057	Open in IMG/M
3300005456\|Ga0070678_100938901	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	792	Open in IMG/M
3300005563\|Ga0068855_102519433	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	511	Open in IMG/M
3300005614\|Ga0068856_100022076	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	6189	Open in IMG/M
3300005617\|Ga0068859_100173577	All Organisms → cellular organisms → Bacteria	2237	Open in IMG/M
3300005713\|Ga0066905_100741015	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	847	Open in IMG/M
3300005843\|Ga0068860_100067463	All Organisms → cellular organisms → Bacteria	3399	Open in IMG/M
3300005983\|Ga0081540_1113127	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1142	Open in IMG/M
3300006049\|Ga0075417_10044394	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1895	Open in IMG/M
3300006173\|Ga0070716_100299395	Not Available	1118	Open in IMG/M
3300006755\|Ga0079222_10948445	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	730	Open in IMG/M
3300006847\|Ga0075431_100391691	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1392	Open in IMG/M
3300006847\|Ga0075431_100672468	All Organisms → Viruses → Predicted Viral	1014	Open in IMG/M
3300006852\|Ga0075433_11213297	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	654	Open in IMG/M
3300006852\|Ga0075433_11581966	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	565	Open in IMG/M
3300006871\|Ga0075434_100266084	Not Available	1733	Open in IMG/M
3300006904\|Ga0075424_101373854	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	750	Open in IMG/M
3300007076\|Ga0075435_101001673	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	729	Open in IMG/M
3300009011\|Ga0105251_10253262	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	794	Open in IMG/M
3300009100\|Ga0075418_10188416	Not Available	2197	Open in IMG/M
3300009147\|Ga0114129_12689759	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	593	Open in IMG/M
3300009162\|Ga0075423_10356847	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1533	Open in IMG/M
3300009176\|Ga0105242_10962909	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	858	Open in IMG/M
3300009553\|Ga0105249_11612913	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	721	Open in IMG/M
3300010371\|Ga0134125_11908210	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	646	Open in IMG/M
3300010371\|Ga0134125_12379696	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	576	Open in IMG/M
3300010375\|Ga0105239_12234512	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	636	Open in IMG/M
3300010397\|Ga0134124_12359837	Not Available	573	Open in IMG/M
3300010400\|Ga0134122_12472930	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	568	Open in IMG/M
3300010403\|Ga0134123_10113918	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2178	Open in IMG/M
3300012885\|Ga0157287_1096253	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	543	Open in IMG/M
3300012893\|Ga0157284_10173482	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	630	Open in IMG/M
3300012895\|Ga0157309_10364404	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	506	Open in IMG/M
3300012897\|Ga0157285_10031610	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1195	Open in IMG/M
3300012899\|Ga0157299_10218320	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	586	Open in IMG/M
3300012901\|Ga0157288_10227010	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	612	Open in IMG/M
3300012907\|Ga0157283_10144067	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	694	Open in IMG/M
3300012908\|Ga0157286_10010445	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1804	Open in IMG/M
3300012910\|Ga0157308_10032684	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1253	Open in IMG/M
3300012910\|Ga0157308_10071199	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	959	Open in IMG/M
3300012911\|Ga0157301_10021399	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1433	Open in IMG/M
3300012911\|Ga0157301_10046226	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1103	Open in IMG/M
3300012913\|Ga0157298_10005584	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1872	Open in IMG/M
3300012951\|Ga0164300_10140933	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1117	Open in IMG/M
3300012957\|Ga0164303_11140447	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	566	Open in IMG/M
3300012985\|Ga0164308_11590227	Not Available	603	Open in IMG/M
3300013100\|Ga0157373_10108018	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1957	Open in IMG/M
3300013104\|Ga0157370_10284608	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1527	Open in IMG/M
3300013306\|Ga0163162_10948889	All Organisms → cellular organisms → Bacteria → Proteobacteria	971	Open in IMG/M
3300014745\|Ga0157377_10489286	All Organisms → cellular organisms → Bacteria → Proteobacteria	857	Open in IMG/M
3300014968\|Ga0157379_10134386	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2228	Open in IMG/M
3300015200\|Ga0173480_10389088	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	806	Open in IMG/M
3300015201\|Ga0173478_10687728	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	545	Open in IMG/M
3300015371\|Ga0132258_10792048	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2389	Open in IMG/M
3300017792\|Ga0163161_10023613	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter caenitepidi	4339	Open in IMG/M
3300019356\|Ga0173481_10092399	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1145	Open in IMG/M
3300019356\|Ga0173481_10713592	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	543	Open in IMG/M
3300019362\|Ga0173479_10764905	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	530	Open in IMG/M
3300022892\|Ga0247753_1025551	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	681	Open in IMG/M
3300022899\|Ga0247795_1092355	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	535	Open in IMG/M
3300023266\|Ga0247789_1078693	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	637	Open in IMG/M
3300025315\|Ga0207697_10174369	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	941	Open in IMG/M
3300025906\|Ga0207699_11289546	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	541	Open in IMG/M
3300025911\|Ga0207654_10070665	All Organisms → cellular organisms → Bacteria	2073	Open in IMG/M
3300025911\|Ga0207654_11252994	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	541	Open in IMG/M
3300025912\|Ga0207707_11479812	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	539	Open in IMG/M
3300025918\|Ga0207662_10057143	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2331	Open in IMG/M
3300025919\|Ga0207657_10060576	All Organisms → cellular organisms → Bacteria	3248	Open in IMG/M
3300025919\|Ga0207657_10574903	All Organisms → cellular organisms → Bacteria → Proteobacteria	880	Open in IMG/M
3300025922\|Ga0207646_10749663	All Organisms → cellular organisms → Bacteria → Proteobacteria	871	Open in IMG/M
3300025923\|Ga0207681_11546051	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	556	Open in IMG/M
3300025924\|Ga0207694_10350206	Not Available	1222	Open in IMG/M
3300025925\|Ga0207650_10857874	Not Available	770	Open in IMG/M
3300025927\|Ga0207687_11587531	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	562	Open in IMG/M
3300025931\|Ga0207644_10037734	All Organisms → cellular organisms → Bacteria	3401	Open in IMG/M
3300025932\|Ga0207690_10660917	All Organisms → cellular organisms → Bacteria → Proteobacteria	857	Open in IMG/M
3300025933\|Ga0207706_10750846	All Organisms → cellular organisms → Bacteria → Proteobacteria	831	Open in IMG/M
3300025934\|Ga0207686_10389880	Not Available	1058	Open in IMG/M
3300025939\|Ga0207665_10333806	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1141	Open in IMG/M
3300025942\|Ga0207689_10023843	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter caenitepidi	5133	Open in IMG/M
3300025949\|Ga0207667_11355065	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	686	Open in IMG/M
3300026075\|Ga0207708_10052695	All Organisms → cellular organisms → Bacteria	3099	Open in IMG/M
3300026078\|Ga0207702_10717949	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	985	Open in IMG/M
3300026095\|Ga0207676_11649632	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	639	Open in IMG/M
3300026121\|Ga0207683_10966680	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	791	Open in IMG/M
3300026142\|Ga0207698_11227893	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	764	Open in IMG/M
3300026900\|Ga0207444_1003379	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1154	Open in IMG/M
3300027873\|Ga0209814_10006681	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4449	Open in IMG/M
3300027907\|Ga0207428_10818344	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	661	Open in IMG/M
3300028379\|Ga0268266_10331768	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1426	Open in IMG/M
3300028381\|Ga0268264_10288376	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1540	Open in IMG/M
3300031562\|Ga0310886_10610792	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	670	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	55.17%
Environmental	Environmental	43.97%
Engineered	Engineered	0.86%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	54.31%
Terrestrial	Environmental → Terrestrial	43.97%
Human	Host-Associated → Human	0.86%
Solid Waste	Engineered → Solid Waste	0.86%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	43.97%
Rhizosphere	Host-Associated → Plants → Rhizosphere	36.21%
Rhizoplane	Host-Associated → Plants → Rhizoplane	18.10%
Digestive System	Host-Associated → Human → Digestive System	0.86%
Grass	Engineered → Solid Waste → Grass	0.86%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	31.90%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	22.41%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	15.52%
Soil	Host-Associated → Plants → Rhizosphere → Soil	13.79%
Loam	Environmental → Terrestrial → Soil → Loam	12.07%
Soil	Host-Associated → Plants → Rhizoplane → Soil	1.72%
Large Intestine	Host-Associated → Human → Digestive System → Large Intestine	0.86%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.86%
Composting	Engineered → Solid Waste → Grass → Composting	0.86%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	22.41%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	22.41%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	15.52%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	13.79%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	11.21%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	7.76%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	1.72%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.86%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.86%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.86%
Fecal	Host-Associated → Human → Digestive System → Large Intestine → Fecal	0.86%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.86%
Unclassified	Engineered → Solid Waste → Grass → Composting → Unclassified	0.86%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	18.10%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	11.21%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	8.62%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	6.90%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	6.03%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	5.17%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	4.31%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	4.31%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	3.45%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	3.45%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.59%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.59%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.72%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.72%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.72%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	1.72%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.72%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.72%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	1.72%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.86%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.86%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.86%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.86%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.86%
Host-Associated	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated	0.86%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.86%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.86%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.86%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.86%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.86%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.86%
Switchgrass, Maize And Mischanthus Litter	Engineered → Solid Waste → Grass → Composting → Unclassified → Switchgrass, Maize And Mischanthus Litter	0.86%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459019	Litter degradation MG4	Engineered	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300001990	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3	Host-Associated	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300004798	Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - roots SR-2 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated	Open in IMG/M
3300005333	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG	Host-Associated	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005335	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG	Host-Associated	Open in IMG/M
3300005337	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG	Environmental	Open in IMG/M
3300005339	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG	Host-Associated	Open in IMG/M
3300005341	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG	Environmental	Open in IMG/M
3300005344	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG	Host-Associated	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005367	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG	Host-Associated	Open in IMG/M
3300005406	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG	Environmental	Open in IMG/M
3300005441	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005563	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2	Host-Associated	Open in IMG/M
3300005577	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2	Host-Associated	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300005983	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1	Host-Associated	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009011	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300012885	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S104-311B-1	Environmental	Open in IMG/M
3300012893	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S059-202B-1	Environmental	Open in IMG/M
3300012895	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S208-509C-2	Environmental	Open in IMG/M
3300012897	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S074-202C-1	Environmental	Open in IMG/M
3300012899	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S058-202B-2	Environmental	Open in IMG/M
3300012901	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S119-311C-1	Environmental	Open in IMG/M
3300012907	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S044-104R-1	Environmental	Open in IMG/M
3300012908	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S089-202R-1	Environmental	Open in IMG/M
3300012910	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S198-509B-2	Environmental	Open in IMG/M
3300012911	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S088-202R-2	Environmental	Open in IMG/M
3300012913	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S043-104R-2	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300013100	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG	Host-Associated	Open in IMG/M
3300013104	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG	Host-Associated	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300014745	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG	Host-Associated	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300015200	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S209-509C-1 (version 2)	Environmental	Open in IMG/M
3300015201	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S014-104B-1 (version 2)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300019356	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)	Environmental	Open in IMG/M
3300019362	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S104-311B-1 (version 2)	Environmental	Open in IMG/M
3300022892	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S169-409R-5	Environmental	Open in IMG/M
3300022899	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S016-104C-6	Environmental	Open in IMG/M
3300023266	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S220-509R-4	Environmental	Open in IMG/M
3300025315	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Host-Associated	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025911	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025912	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025918	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025919	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025923	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025924	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025925	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025932	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025933	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025934	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025942	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025949	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026075	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026095	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026121	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026142	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026900	Soil microbial communities from Kellog Biological Station, Michigan, USA - Nitrogen cycling UWRJ-G01K4-12 (SPAdes)	Environmental	Open in IMG/M
3300027873	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300028379	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300031562	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D3	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
4MG_04846370	2170459019	Switchgrass, Maize And Mischanthus Litter	VVDSTHCTQCNALLIDIDFYGERLIGCIECNRWTRDGWLFIHLPEEDLEALRADRGPETIAEFPELEIGWTMLRDDGWYAYYNEEKPLGPFATEAEAARAGLKEWGSSR
JGI1027J12803_1011980051	3300000955	Soil	VPGPHTQCTQCNAPLIEIDFYGERMVGCIECNRWTRDGWLFIDLPEEDIEALRADRELQTIAEFLELKTASTMLRDDGWYAYYKDEKPLGPFATEAEAARA
JGI24737J22298_102047392	3300001990	Corn Rhizosphere	MVDSTHCMHCNAPLIEIDFYGEGMAGCIECNRWTRDGWLFIDLPEEDIEALRADREPKTIXEFLELKTASTMLRDDGWYAYYKDEKPLGPFATEAEAARAGLEVWVKKTK*
Ga0062593_1012990002	3300004114	Soil	MIDSTHCSQCNGPLIEIDFYGERSVGCIECNRWTRDGWLFIDLPEEDIEALRADRGPQTIAEFLELENAWTMLRDDGWYAYYNEEKLGPFPREAEAARAGLKAWRKETAPGG*
Ga0063356_1013270221	3300004463	Arabidopsis Thaliana Rhizosphere	MPGIHCSQCNGLLIEIDFYGERLAGCSECNRWTRDGWLFMHLPEEDLEVLRADREPETIAEFLELEIGWTMLRDDGWYAYYNEEKPLGPFATE
Ga0062595_1000853882	3300004479	Soil	VPGPHTQCTQCNAPLIEIDFYGERMVGCIECNRWTRDGWLFIDLPEEDIEALRADRELQTIAEFLELKTASTMLRDDGWYAYYKDEKPLGPFATEAEAARAGLEVWVKKTK*
Ga0062595_1006915031	3300004479	Soil	MPGIHCSQCNGLLIEIDFYGERLAGCSECNRWTRDGWLFMHLPEEDLEVLRADREPETIAEFLELEIGWTMLRDDGWYAYYNEEKPLGPFATEAEAARA
Ga0062591_1008782211	3300004643	Soil	VPGPHTQCTQCNAPLIEIDFYGERMVGCIECNRWTRDGWLFIDLPEEDIEALRADRELQTIAEFLELKTASTMLRDDGWYAYYKDEKPLGPFATEAEAARAGLETWVN*
Ga0058859_116760891	3300004798	Host-Associated	MHCNAPLIEIDFYGEGMAGCIECNRWTRDGWLFIDLPEEDIEALRADREPKTIAEFLELKTASTMLRDDGWYAYYKDEKPLGPFATEAEAARAGLEVWVKKTK*
Ga0070676_100891874	3300005328	Miscanthus Rhizosphere	MVDSTHCMHCNAPLIEIDFYGEGMAGCIECNRWTRDGWLFIDLPEEDIEALRADREPKTIAEFLELKTASTMLRDDGWYAYYKDEKPLGPFATEAEAARAGLEVWVKKTK*
Ga0070670_1002972272	3300005331	Switchgrass Rhizosphere	MIGCIECNRWTRDGWIFIDLPEEDIEALRADREPKTIAEFLELKTASTMLRDDGWYAYYKDEKPLGPFATEAEAARAGLEVWVKKTK*
Ga0070677_107295901	3300005333	Miscanthus Rhizosphere	STHCMHCNAPLIEIDFYGEGMAGCIECNRWTRDGWLFIDLPEEDIEALRADREPKTIAEFLELKTASTMLRDDGWYAYYKDEKPLGPFATEAEAARAGLEVWVKKTK*
Ga0068869_1013769791	3300005334	Miscanthus Rhizosphere	MVDSTHCSQCNGPLIEVDFYGERMIGCIECNRWTRDGWIFIDLPEEDIEALRAERAPKIVAEFLELETGWTMLRDDGWYAYYNDEKPLGPFATEAEAARAGLKAWGKETAPGG*
Ga0070666_101371333	3300005335	Switchgrass Rhizosphere	MHCNAPLIEIDFYGEGMAGCIECNRWTRDGWLFIDLPEEDIEALRADREPKTISEFLELKTASTMLRDDGWYAYYKDEKPLGPFATEAEAARAGLEVWVKKTK*
Ga0070682_1003705542	3300005337	Corn Rhizosphere	MHCNAPLIEIDFYGEGMAGCIECNRWTRDGWLFIDLPEEDIEALRADREPKTIAEFLELKTASTMLRDDGWYAYYKDEKPLGPFATEAEAAR
Ga0070660_1007048761	3300005339	Corn Rhizosphere	MVDSTHCSQCNGPLIEVDFYGERMIGCIECNRWTRDGWIFIDLPEEDIEALRAERAPKIVAEFLELETGWTMLRDDGWYAYYNDEKPLGPFATEAEAARAG
Ga0070691_100006421	3300005341	Corn, Switchgrass And Miscanthus Rhizosphere	MVDSTHCMHCNAPLIEIDFYGEGMAGCIECNRWTRDGWLFIDLPEEDIEALRADREPKTIAEFLELKTASTMLRDDGWYAYYKDEKPLGPFATEAEAARAGLETWVN*
Ga0070691_108217422	3300005341	Corn, Switchgrass And Miscanthus Rhizosphere	MVDSTHCSQCNGPLIEVDFYGERMIGCIECNRWTRDGWIFIDLPEEDIEALRAERAPKIVAEFLELETGWTMLRDDGWYAYYNDEKPLGPFATEAEAARA
Ga0070661_10000617011	3300005344	Corn Rhizosphere	MVDSTHCSQCNGPLTEVDFYGERMIGCIECNRWIRDGWIFIDLPEEDIEALRAERAPKIVAEFLELETGWTMLRDDGWYAYYNDEKPLGPFATEAEAARAGLKAWGKETAPGG*
Ga0070668_1000613144	3300005347	Switchgrass Rhizosphere	VPGPHTQCTQCNAPLIEIDFYGERMVGCIECNRWTRDGWLFIDLPEEDIEALRADREPKTIAEFLELKTASTMLRDDGWYAYYKDEKPLGPFATEAEAARAGLEVWVKKTK*
Ga0070667_1011576413	3300005367	Switchgrass Rhizosphere	MVDSTHCSQCNGPLIEVDFYGERMIGCIECNRWTRDGWIFIDLPEEDIEALRAERAPKIVAEFLELETGWTMLRDDGWYAYYNDEKPLGPFATEAEAA
Ga0070703_101984871	3300005406	Corn, Switchgrass And Miscanthus Rhizosphere	MHCNAPLIEIDFYGEGMAGCIECNRWTRDGWLFIDLPEEDIEGLRADREPKTIAEFLELKTASTMLRDDGWYAYYKDEKPLGPFATETEAARAGLEVWVKKTK*
Ga0070700_1000388201	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	VPGPHTQCTQCNAPLIEIDFYGERMVGCIECNRWTRDGWLFIDLPEEDIEALRADREPKTISEFLELKTASTMLRDDGWYAYYKDEKPLGPFATEAEAARAGLEVWVKKTK*
Ga0070708_1005805092	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MVDSTHCSQCNSPLIEVDFYGEGMVGCIECNRWTRDGWLYIHLSEEDLEALRVAREPETIAEFLELKTGWMMRRDDGWYAHYNEEKPLGPFATEAEAARAGLKAWGKETAPGASS*
Ga0070678_1009389013	3300005456	Miscanthus Rhizosphere	MVDSTHCSQCNGPLIEVDFYGERMIGCIECNRWTRDGWIFIDLPEEDIEALRAERAPKIVAEFLELETGWTMLRDDGWYAYYNDEKPLGPF
Ga0068855_1025194332	3300005563	Corn Rhizosphere	MVDSTHCSQCNGPLIEVDFYGERMIGCIECNRWTRDGWIFIDLPEEDIEALRAERAPKIVAEFRELETGWTMLRDDGWYAYYNDEKPLGPFATEAEA
Ga0068857_1019404841	3300005577	Corn Rhizosphere	MVDSTHCSQCSAQLTEIDFYGERMVGCIDCNRWTRDGWLYIHLAEEDLAALRADRGPKTIAEFLELQTGWTMLRDDGWYAYYNEEKPLGPFATEAGSGACRAKGVAKRNGPRRLVL
Ga0068856_10002207610	3300005614	Corn Rhizosphere	MHCNAPLIEIDFYGEGMAGCIECNRWTRDGWLFIDLPEEDIEALRADREPKTIAEFLELKTASTMLRDDGWYAYYKDEKPLGPFATEAEAARAGLKAWRKETAPGGSS*
Ga0068859_1001735775	3300005617	Switchgrass Rhizosphere	MHCNAPLIEIDFYGEGMAGCIECNRWTRDGWLFIDLPEEDIEALRADREPKTIAEFLELKTASTMLRDDGWYAYYKDEKPLGPFATEAEAARAGLKAWRKETA
Ga0066905_1007410152	3300005713	Tropical Forest Soil	MVDSTHCTQCNAPLIEVDFYGEGMAGCIECNRWTRDGWLHIHLPEEDLEALRVAREPKTIAEFLELKTGWTMRRDDGWYAYYNEEKPLGPFATEAEAARAGLKAWRKETAPGGQS*
Ga0068860_1000674634	3300005843	Switchgrass Rhizosphere	MVDSTHCMHCNAPLIEIDFYGEGMAGCIECNRWTRDGWLFIDLPEEDIEALRADREPKTISEFLELKTASTMLRDDGWYAYYKDEKPLGPFATEAEAARAGLEVWVKKTK*
Ga0081540_11131272	3300005983	Tabebuia Heterophylla Rhizosphere	MVDSTHCTQCNAPLIEVDFYGERMAGCIECNRWTRDGWLHIHLPEEDLEALRVAREPKTIAEFLELKTGWTMRRDDGWYAYYNEEKPLGPFATEAEAARAGLKAWRKEPAPGGAS*
Ga0075417_100443943	3300006049	Populus Rhizosphere	VTHHGRLTHCAQCNGPLIDVNFYGERLVGCIECNRWTRDGWLFIDLPEEDIEALRAERAPKIVAEFLELETGWTMLRDDGWYAYYNDEKPLGPFATEVEAARAGLKAWGKETAPGWRS*
Ga0070716_1002993951	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	YGELLIGCIECNRRDGWLFIHLPEENIEALRADRGPETIAEFLELEIGWTMLRDDGWYAYYNEEKPLGPFATEAEAARAGLEVWVKKTK*
Ga0079222_109484451	3300006755	Agricultural Soil	EGMVGCIECNRWTRDGWLYIHLSEEDLEALRVAREPETIAEFLELKTGWMMRRDDGWYAHYNEEKPLGPFATEAEAARAGLKVWGKETAPGASS*
Ga0075431_1003916912	3300006847	Populus Rhizosphere	MTDSTHCSQCNGPLTEVDFYGERLVGCIECNRWTRDGWLFIDLPEEDIEALRADREPKTIAEFLELKTASTMLRDDGWYAYYKDEKPLGPFATEAEAARAGLEVWVKKTK*
Ga0075431_1006724683	3300006847	Populus Rhizosphere	MVDSTHCSQCNGPLIDVDFYGERLVGCIEWNRWTRDGWLFIDLPEEDIEALRAERAPKIVAEFLELETGWTMLRDDGWYAYYNDEKPLGPFPTEAEAARAGLKAWGKETAPGWRS*
Ga0075433_112132971	3300006852	Populus Rhizosphere	MHCNAPLIEIDFYGEGMAGCIECNRWTRDGWLFIDLPEEDIEALRADREPKTIAEFLELKTASTMLRDDGWYAYYKDEKPLGPFATEAEAAG
Ga0075433_115819661	3300006852	Populus Rhizosphere	MVDSTHCSQCNGPLIDVDFYGERLVGCIECNRWTRDGWLFIDLPEEDIEALRAERAPKIVAEFLELETGWTMLRDDGWYAYYNDEKPLGPFATEAEAARAGLKAWGKETAPGWRS*
Ga0075434_1002660842	3300006871	Populus Rhizosphere	MVDSTHCSQCNGPLIDVDFYGERLVGCIECNRWTRDGWLFIDLPEEDIEALRAERAPKIVAEFLELETGWTMLRDDGWYAYYNDEKPLGPFATEAEAARAGQGGGPEAASVREGRRLT*
Ga0075424_1013738542	3300006904	Populus Rhizosphere	MVDSTHCSQCSALLTEIDFYGERMVGCIDCNRWTRDGWLYIHLAEEDLAALRADRGPKTIAEFLELQTGWTMLGDDGWYAYYNEEKPLGPFATEAGSGASRAKGVAKRNGPRR
Ga0075435_1010016731	3300007076	Populus Rhizosphere	MVDSTHCSQCNGPLIDVDFYGERLVGCIECNRWTRDGWLFIDLPEEDIEALRAERAPKIVAEFLELETGWTMLRDDGWYAYYNDEKPLGPFATEAEAARAGLKAWGKETAPGG*
Ga0105251_102532622	3300009011	Switchgrass Rhizosphere	MHCNAPLIEIDFYGEGMAGCIECNRWTRDGWLFIDLPEEDIEALRAERAPKIVAEFLELETGWTMLRDDGWYAYYNDEKPLGPFATEAEAARAGLKAWGKETAPGG*
Ga0075418_101884162	3300009100	Populus Rhizosphere	MVDSTHCYQCNGPLIDVDFYGERLVGCIECNRWTRDGWLFIDLPEEDIEALRAERAPKIVAEFLELETGWTMLRDDGWYAYYNDEKPLGPFATEAEAARAGLKAWGKETAPGG*
Ga0114129_126897591	3300009147	Populus Rhizosphere	MVDSIHCSQCNGLLIEIDFYGECVVGCIDCNRWTQDGWLFIHLPDEDFEALRADRGPETIAEFLELKTGWTMLRDDGWYACCNEEKPLGPFATEAEAARAGLKRWRKETAPRG*
Ga0075423_103568472	3300009162	Populus Rhizosphere	MTDSTHCSQCNGPLTEVDFYGERLVGCIECNRWTRDGWLFIDLPEEDIEALRADREPQTIAEFLELKTASTMLRDDGWYAYYKDEKPLGPFATEAEAARAGLEVWVKKTK*
Ga0105242_109629091	3300009176	Miscanthus Rhizosphere	MHCNAPLIEIDFYGERMVGCIECNRWTRDGWLFIDLPEEDIEALRADREPKTIAEFLELKTASTMLRDDGWYAYYKDEKPLGPFATEAEAARAGLEVWVKKTK*
Ga0105249_116129131	3300009553	Switchgrass Rhizosphere	MVDSTHCSQCNALLIEIDFYGERLIGCIECNRWTRDGWLFIHLPEEDLEALRANRGPKTIAEFLELENSWTMRRDGGWYAYSSEEKPLGPFATEVAAARAGLKAWGKNGQNGA
Ga0134125_119082102	3300010371	Terrestrial Soil	MVDSTHCSQCNGPLIEVDFYGERMIGCIECNRWTRDGWIFIDLPEEDIEALRAERAPKIVAEFLELETGWTMLRDDGWYAYYNDEKPLGPFATEAEAARAGL
Ga0134125_123796961	3300010371	Terrestrial Soil	MVDSTHCTQCNALLIEIDFYAERMVGCIECNRWTRDGWLYIHLAEEDLAALRADRGPKTIAEFLELQTGWTMLRDDGWYACYNEEKPLGPFATEAEAAR
Ga0105239_122345121	3300010375	Corn Rhizosphere	MLVAGVTIQDLASVVDSTHCSQCNALLIEIDFYGELLIGCIECNRWTRDGWLFIHLPEENIEALRADRGPETIAEFLELEIGWTMLRDDGWYAYYNEEKPLGPFPTEAEVARAGLTAWRKETAPGGSS*
Ga0134124_123598371	3300010397	Terrestrial Soil	MGERMVGCIECNRWTRDGWLYIHLPEEDLAALRAERGPESIAEFLELKIGWTMLRDGGWYAYYNEEKPLGPFATEAEAARAGLKARAKETAPGG*
Ga0134122_124729301	3300010400	Terrestrial Soil	MVDSTHCSQCSALLTEIDFYGERMVGCIDCNRWTRDGWLYIRLAEEDLAALRADRGPKTIAEFLELQTGWTMLRDDGWYASYNEEKPLGPFATEAARAGLKEWRKETAPGGPS*
Ga0134123_101139184	3300010403	Terrestrial Soil	MHCNAPLIEIDFYGEGMAGCIECNRWTRDGWLFIDLPEEDIEALRADREPKTIAEFLELKTASTMLRDNGWYAYYKDEKPLGPFATEAEAARAGLEVWVKKTK*
Ga0157287_10962532	3300012885	Soil	HCSQCNGPLIEIDFYGERSVGCIECNRWTRDGWLFIDLPEEDIEALRADRGPQTIAEFLELENAWTMLRDDGWYAYYNEEKLGPFPREAEAARAGLKAWRKETAPGG*
Ga0157284_101734821	3300012893	Soil	MVDSTHCSQCNGPLIDVDFYGERLVGCIECNRWTRDGWLFIDLPEEDIEALRAERAPKIVAEFLELETGWTMLRDDGWYAYYNDEKPLGPFATEAEAARAGLKAWGKETAP
Ga0157309_103644041	3300012895	Soil	QCKGPLIDVDFYGERLVGCIECNRWTRDGWLFIDLPEEDIEALRADRGPQTIAEFLELENAWTMLRDDGWYAYYNDEKPLGPFATEAEAARAGLKAWGKETAPGG*
Ga0157285_100316101	3300012897	Soil	MVDSTHCSQCNGPLIDVDFYGERLVGCIECNRWTRDGWLFIDLPEEDIEALRAERAPKIVAEFLELETGWTMLRDDGWYAYYKDEKPLGPFATEAEAARAGLEVWVKKTK*
Ga0157299_102183202	3300012899	Soil	MEIDFYGERVVGCIECNRWTRDGWLFMRLPEEDLEALKVASGPKAIAKFLELKTGWTMLRDGGWYAYYNEEKPLGPFATEAEAAGAGLKAWRKATAPGGSI*
Ga0157288_102270101	3300012901	Soil	MVGCIDCNRWTRDGWLYIHLAEEDLAALRADRGPKTIAEFLELQTGWTMLRDDGWYASYNEEKPLGPFATEAEAARAGLRAWRKETAPGGS
Ga0157283_101440671	3300012907	Soil	MVDSTHCSQCNGPLIEVDFYGERMIGCIECNRWTRDGWIFIDLPEEDIEALRAERAPKIVAEFLELETGWTMLRDDGWYDYHNEEKPLGPFATEAEAARAGLKAWRKEPAPGSRS*
Ga0157286_100104451	3300012908	Soil	MIDSTHCSQCNGPLIEIDFYGERSVGCIECDRWTRDGWLFIDLPEEDIEALRADRGPQTIAEFLELENAWTMLRDDGWYAYYNEEKLGPFPREAEAARAGLKAWRKETAPGG*
Ga0157308_100326843	3300012910	Soil	MVDSTHCSQCNGPLIEVDFYGERMIGCIECNRWTRDGWIFIDLPEEDIEALRAERAPKIVAEFLELETGWTMLRDDGWYAYYNDEKPLGPFATEAEAARAGLKAWGKETAPGGQS*
Ga0157308_100711991	3300012910	Soil	MHCNAPLIEIDFYGEGMAGCIECNRWTRDGWLFIDLPEEDIEALRADREPQTIAEFLELKTASTMLRDDGWYAYYKDEKPLGPFATEAEAARAGLETWVN*
Ga0157301_100213992	3300012911	Soil	MVDSTHCSQCNGPLIDVDFYGERLVGCIECNRWTRDGWIFIDLPEEDIEALRAERAPKIVAEFLELETGWTMLRDDGWYAYYNDEKPLGPFATEAEAARAGLKAWGKETAPGG*
Ga0157301_100462263	3300012911	Soil	GPLIEIDFYGERSVGCIECNRWTRDGWLFIDLPEEDIEALRADRGPQTIAEFLELENAWTMLRDDGWYAYYNEEKLGPFPREAEAARAGLKAWRKETAPGG*
Ga0157298_100055843	3300012913	Soil	MVDSTHCSQCNGPLIEVDFYGERMIGCIECNRWTRDGWIFIDLPEEDIEALRAERAPKIVAEFLELKTASTMLRDDGWYAYYKDEKPLGPFATEAEAARAGLKAWGKETAPGG*
Ga0164300_101409332	3300012951	Soil	MHCNAPLIEIDFYGEGMAGCIECNRWTRDGWLFIDLPEEDIETLRADREPKTIAEFLELKTASTMLRDDGWYAYYKDEKPLGPFATEAEAARAGLEVWVKKTK*
Ga0164303_111404471	3300012957	Soil	THCSQCNALLIEIDFYGERLIGCIECNRWTRDGWLFIHLPEEDLEALRADREPATIAEFLEIGWTMLRDGGWYAYHNEEKPLGPFATEAEAARAGLKEWRKETAPGGPS*
Ga0164308_115902271	3300012985	Soil	YGEGMAGCIECNRWTRDGWLFIDLPEEDIEALRADREPKTIAEFLEIGWTMLRDGGWYAYHNEEKPLGPFATEAEAARAGLEVWVKKTK*
Ga0157373_101080182	3300013100	Corn Rhizosphere	MHCNAPLIEIDFYGEGMAGCIECNRWTRDGWLFIDLPEEDIEALRADRELQTIAEFLELKTASTMLRDDGWYAYYKDEKPLGPFATEAEAARAGLEVWVKKTK*
Ga0157370_102846081	3300013104	Corn Rhizosphere	MVDSTHCSQCNGPLIEVDFYGERMIGCIECNRWTRDGWIFIDLPEEDIEALRAERAPKIVAEFLELETGWTMLRDDVWYAYYNDEKPLGPFATEAEAARAGLKAWGKETAPGG*
Ga0163162_109488891	3300013306	Switchgrass Rhizosphere	MVDSTHCSQCNGPLIEVDFYGERMIGCIECNRWTRDGWIFIDLPEEDIEALRAERAPKIVAEFLELETGWTMLRDDGWYAYYNDEKPLGPFATEAEAARAGLKAWGKETAPGWRS*
Ga0157377_104892863	3300014745	Miscanthus Rhizosphere	MVDSTHCSQCNGPLIEVDFYGERMIGCIECNRWTRDGWIFIDLPEEDIEALRAERAPKIVAEFLELETGWTMLRDDGWYAYYNDEKPLGPFATEAEAARAGLKAWGK
Ga0157379_101343863	3300014968	Switchgrass Rhizosphere	MQCKAPLIEIDFYGERMVGCIECNRWTRDGWLFIDLPEEDIEALRADREPKTIAEFLELKTASTMLRDDGWYAYYKDEKPLGPFATEAEAARAGLEVWVKKTK*
Ga0173480_103890882	3300015200	Soil	MVDSTHCSQCSALLTEIDFYGERMVGCIDCNRWTRDGWLYIHLAEEDLAALRADRGPKTIAEFLELQTGWTMLLDDGWYASYNEEKPLGPCATEAEAARAGLGAWRKETAPGGSSWGRLQDQ
Ga0173478_106877281	3300015201	Soil	MVDSTHCSQCNGPLIEVDFYGERMIGCIECNRWTRDGWIFIDLPEEDIEALRADRGPQTIAEFLELENAWTMLRDDGWYAYYKDEKPLGPFATEVEAAGAGLKAWRKATAPGRSI*
Ga0132258_107920484	3300015371	Arabidopsis Rhizosphere	MHCNAPLIEIDFYGEGMAGCIECNRWTRDGWLFIDLPEEDIEALRADREPKTIAEFLELKTASTVLRDDGWYAYYKDEKPLGPFATEAEAARAGLEVWVKKTK*
Ga0163161_100236131	3300017792	Switchgrass Rhizosphere	MVDSTHCSQCNGPLIEVDFYGERMIGCIECNRWTRDGWIFIDLPEEDIEALRAERAPKIVAEFLELETGWTMLRDDGWYAYYNDEKPLGPFATEAEAARAGLEAWGKETAPGG
Ga0173481_100923991	3300019356	Soil	MIDSTHCSQCNGPLIEIDFYGERSVGCIECNRWTRDGWLFIDLPEEDIEALRADRGPQTIAEFLELENAWTMLRDDGWYAYYNEEKLGPFPREAEAARAGLKAWRKETAPGG
Ga0173481_107135921	3300019356	Soil	MVDSTHCSQCNGPLIEVDFYGERMIGCIECNRWTRDGWIFIDLPEEDIEALRAERAPKIVAEFLELETGWTMLRDDGWYAYYNDEKPLGPFATEAKPRELG
Ga0173479_107649051	3300019362	Soil	STHCMHCNAPLIEIDFYGEGMAGCIECNRWTRDGWLFIDLPEEDIEALRADRELQTIAEFLELKTASTMLRDDGWYAYYKDEKPLGPFATEAEAARAGLETWVN
Ga0247753_10255511	3300022892	Soil	VPGPHTQCTQCNAPLIEIDFYGERMVGCIECNRWTRDGWLFIDLPEEDIEALRADRELQTIAEFLELKTASTMLRDDGWYAYYKDEKPLGPFATEAEAARAGLETWVN
Ga0247795_10923551	3300022899	Soil	MIDSTHCSQCNGPLIEIDFYGERSVGCIECNRWTRDGWLFIDLPEEDIEALRADRGPQTIAEFLELENAWTMLRDDGWYAYYKDEKPLGPFATEAEAARAGLETWVN
Ga0247789_10786931	3300023266	Soil	VPGPHTQCTQCNAPLIEIDFYGERMVGCIECNRWTRDGWLFIDLPEEDIEALRAERAPKIVAEFLELETGWTMLRDDGWYAYYKDEKPLGPFATEAEAAGAGLKAWRKETAPGGST
Ga0207697_101743691	3300025315	Corn, Switchgrass And Miscanthus Rhizosphere	MVDSTHCMHCNAPLIEIDFYGEGMAGCIECNRWTRDGWLFIDLPEEDIEALRADREPKTIAEFLELKTASTMLRDDGWYAYYKDEKPLGPFATEAEAARAGLKAWGKETAPGG
Ga0207699_112895461	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	MHCNAPLIEIDFYGEGMAGCIECNRWTRDGWLFIDLPEEDIEALRADREPKTIAEFLELKTASTMLRDDGWYAYYKDEKPLGPFATEAEAA
Ga0207654_100706655	3300025911	Corn Rhizosphere	MVDSTHCMHCNAPLIEIDFYGERMVGCIECNRWTRDGWLFIDLPEEDIEALRAERAPKIVAEFLELETGWTMLRDDGWYAYYNDEKPLGPFATE
Ga0207654_112529941	3300025911	Corn Rhizosphere	CNAPLIEIDFYGEGMAGCIECNRWTRDGWLFIDLPEEDIEALRADREPKTIAEFLELKTASTMLRDDGWYAYYKDEKPLGPFATEAEAARAGLEVWVKKTK
Ga0207707_114798121	3300025912	Corn Rhizosphere	VVMVDSTHCMHCNAPLIEIDFYGEGMAGCIECNRWTRDGWLFIDLPEEDIEALRADREPKTIAEFLELKTASTMLRDDGWYAYYKDEKPLGPFATEAEAARAGLEVWVKKTK
Ga0207662_100571432	3300025918	Switchgrass Rhizosphere	MVDSTHCMHCNAPLIEIDFYGEGMAGCIECNRWTRDGWLFIDLPEEDIEALRADREPKTIAEFLELKTASTMLRDDGWYAYYNDEKPLGPFATEAEAARAGLKAWGKETAPGG
Ga0207657_100605763	3300025919	Corn Rhizosphere	MQCNAPLIEIDFYGEGMAGCIECNRWTRDGWLFIDLPEEDIEALRADREPKTIAEFLELKTASTMLRDDGWYAYYKDEKPLGPFATEAEAARAGLEVWVKKTK
Ga0207657_105749031	3300025919	Corn Rhizosphere	MVDSTHCSQCNGPLIEVDFYGERMIGCIECNRWTRDGWIFIDLPEEDIEALRAERAPKIVAEFLELETGWTMLRDDGWYAYYNDEKPLGPFATEAEAARAGLKAWGKETAPG
Ga0207646_107496632	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MIDSTHCSQCNGLLIEVDFYGEWLVGCIECNRWTRDGWLYIHLSEEDLEALRVAREPETIAEFLELKTGWMMRRDDGWYAHYNEEKPLGPFATEAEAARAGLKAWGKETAPGASS
Ga0207681_115460512	3300025923	Switchgrass Rhizosphere	MVDSTHCSQCNGPLIEVDFYGERMIGCIECNRWTRDGWIFIDLPEEDIEALRAERAPKIVAEFLELETGWTMLRDDGWYAYYNDEKPLG
Ga0207694_103502061	3300025924	Corn Rhizosphere	GEGMAGCIECNRWTRDGWLFIDLPEEDIEALRADREPKTIAEFLELKTASTMLRDDGWYAYYKDEKPLGPFATEAEAARAGLEVWVKKTK
Ga0207650_108578741	3300025925	Switchgrass Rhizosphere	EGMAGCIECNRWTRDGWLFIDLPEEDIEALRADREPKTIAEFLELKTASTMLRDDGWYAYYKDEKPLGPFATEAEAARAGLEVWVKKTK
Ga0207687_115875312	3300025927	Miscanthus Rhizosphere	MHCNAPLIEIDFYGEGMAGCIECNRWTRDGWLFIDLPEEDIEALRADREPKTIAEFLELKTASTMLRDDGWYAYYKDEKPLGPFATEAEAARAGLETWVN
Ga0207644_100377347	3300025931	Switchgrass Rhizosphere	MVDSTHCMHCNAPLIEIDFYGEGMAGCIECNRWTRDGWLFIDLPEEDIEALRADREPKTIAEFLELKTASTMLRDDGWYAYYKDEKPLGPFATEAEA
Ga0207690_106609172	3300025932	Corn Rhizosphere	MVDSTHCSQCNGPLIEVDFYGERMIGCIECNRWTRDGWIFIDLPEEDIEALRAERAPKIVAEFLELETGWTMLRDDGWYAYYNDEKPLGPFATEA
Ga0207706_107508462	3300025933	Corn Rhizosphere	MVDSTHCSQCNGPLIEVDFYGERMIGCIECNRWTRDGWIFIDLPEEDIEALRAERAPKIVAEFLELETGWTMLRDDGWYAYYNDEKPLGPFATE
Ga0207686_103898801	3300025934	Miscanthus Rhizosphere	MVDSTHCSQCNGPLIEVDFYGERMIGCIECNRWTRDGWIFIDLPEEDIEALRADREPKTIAEFLELKTASTMLRDDGWYAYYKDEKPLGPFATEAEAARAGLKAWGKETAPGG
Ga0207665_103338062	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	IDFYGERMVGCIECNRWTRDGWLFIDLPEEDIEALRADRETKTISDFLELKTASTMLRDDGWYAYYKDEKPLGPFATEAEAARAGLEVWVKKTK
Ga0207689_100238436	3300025942	Miscanthus Rhizosphere	MVDSTHCMHCNAPLIEIDFYGEGMAGCIECNRWTRDGWLFIDLPEEDIEALRAERAPKIVAEFLELETGWTMLRDDGWYAYYNDEKPLGPFATEAEAARAGLKAWGKETAPGG
Ga0207667_113550651	3300025949	Corn Rhizosphere	MVDSTHCSQCNGPLIEVDFYGERMIGCIECNRWTRDGWIFIDLPEEDIEALRAERAPKIVAEFLELETGWTMLRDDGWYAYYNDEKPLGPFATEAEA
Ga0207708_100526952	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	MHCNAPLIEIDFYGEGMAGCIECNRWTRDGWLFIDLPEEDIEALRADREPKTISEFLELKTASTMLRDDGWYAYYKDEKPLGPFATEAEAARAGLEVWVKKTK
Ga0207702_107179491	3300026078	Corn Rhizosphere	MHCNAPLIEIDFYGEGMAGCIECNRWTRDGWLFIDLPEEDIEALRADREPKTIAEFLELKTASTMLRDDGWYAYYKDEKPLGPFATEAEAARAGL
Ga0207676_116496321	3300026095	Switchgrass Rhizosphere	MVDSTHCSQCNGPLIEVDFYGERMIGCIECNRWTRDGWIFIDLPEEDIEALRAERAPKIVAEFLELETGWTMLRDDGWYAYYNDEKPLGPFATEAEAAR
Ga0207683_109666803	3300026121	Miscanthus Rhizosphere	MVDSTHCSQCNGPLIEVDFYGERMIGCIECNRWTRDGWIFIDLPEEDIEALRAERAPKIVAEFLELETGWTMLRDDGWYAYYNDEKPLGP
Ga0207698_112278931	3300026142	Corn Rhizosphere	VPGPHTQCTQCNAPLIEIDFYGERMVGCIECNRWTRDGWLFIDLPEEDIEALRADREPKTIAEFLELKTASTMLRDDGWYAYYKDEKPLGPFATEAEAARAGLEVWVKKTK
Ga0207444_10033793	3300026900	Soil	MVDSTHCMHCNAPLIEIDFYGEGMAGCIECNRWTRDGWIFIDLPEEDIEALRAERAPKIVAEFLELETGWTMLRDDGWYAYYNDEKPLGP
Ga0209814_100066811	3300027873	Populus Rhizosphere	MVDSTHCSQCNGPLIEVDFYGERMIGCIECNRWTRDGWLFIDLPEEDIEALRAERAPKIVAEFLELETGWTMLRDDGWYAYYNDEKPLGPFATEAEAAASVREGRRLT
Ga0207428_108183442	3300027907	Populus Rhizosphere	MVDSTHCSQCNGPLIDVDFYGERLVGCIECNRWTRDGWLFIDLPEEDIEALRAERAPKIVAEFLELETGWTMLRDDGWYAYYNDEKPLGPFATEAEAARAGLKAWGKETAPGWRS
Ga0268266_103317684	3300028379	Switchgrass Rhizosphere	MHCNAPLIEIDFYGEGMAGCIECNRWTRDGWLFIDLPEEDIEALRADREPKTISEFLELKTASTMLRDDGWYAYYKDEKPLGPFATEAEAARAGL
Ga0268264_102883764	3300028381	Switchgrass Rhizosphere	ERMVGCIECNRWTRDGWLFIDLPEEDIEALRADREPKTISEFLELKTASTMLRDDGWYAYYKDEKPLGPFATEAEAARAGLEVWVKKTK
Ga0310886_106107922	3300031562	Soil	CSQCNGPLIDVDFYGERLVGCIECNRWTRDGWLFIDLPEEDIEALRAERAPKIVAEFLELETGWTMLRDDGWYAYYNDEKPLGPFATEAEAARAGLKAWGKETAPGG

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F079123

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences