Metagenome / Metatranscriptome Family F079114

Basic Information
Family ID	F079114
Family Type	Metagenome / Metatranscriptome
Number of Sequences	116
Average Sequence Length	83 residues
Representative Sequence	MQSSDRTIALILVGVLAVMLWPIWLAAVAAERQFTWTVVASGLIPLAFSLLVIAAALRLPSRLAHRYQHGIHALGERLHAGTHRHA
Number of Associated Samples	102
Number of Associated Scaffolds	116

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	63.79 %
% of genes near scaffold ends (potentially truncated)	43.10 %
% of genes from short scaffolds (< 2000 bps)	82.76 %
Associated GOLD sequencing projects	93
AlphaFold2 3D model prediction	No

Most Common Taxonomy
Group	Bacteria (58.621 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (18.103 % of family members)
Environment Ontology (ENVO)	Unclassified (30.172 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (46.552 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 83.72% β-sheet: 0.00% Coil/Unstructured: 16.28%
Feature Viewer

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Pfam ID	Name	% Frequency in 116 Family Scaffolds
PF00202	Aminotran_3	54.31
PF00571	CBS	25.86
PF07722	Peptidase_C26	5.17
PF13520	AA_permease_2	2.59
PF07729	FCD	1.72
PF00324	AA_permease	0.86
PF00392	GntR	0.86

COG ID	Name	Functional Category	% Frequency in 116 Family Scaffolds
COG1802	DNA-binding transcriptional regulator, GntR family	Transcription [K]	1.72
COG2186	DNA-binding transcriptional regulator, FadR family	Transcription [K]	1.72
COG0531	Serine transporter YbeC, amino acid:H+ symporter family	Amino acid transport and metabolism [E]	0.86
COG0833	Amino acid permease	Amino acid transport and metabolism [E]	0.86
COG1113	L-asparagine transporter or related permease	Amino acid transport and metabolism [E]	0.86
COG1115	Na+/alanine symporter	Amino acid transport and metabolism [E]	0.86

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	58.62 %
Unclassified	root	N/A	41.38 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	58.62 %
Unclassified	root	N/A	41.38 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	58.62 %
Unclassified	root	N/A	41.38 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.38 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	25.00 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.38 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	24.14 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.38 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	11.21 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	0.86 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.38 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	5.17 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	2.59 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	1.72 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	0.86 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.38 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	5.17 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	2.59 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	1.72 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	0.86 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.86 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300004156\|Ga0062589_100172686	All Organisms → cellular organisms → Bacteria	1519	Open in IMG/M
3300004156\|Ga0062589_100309089	All Organisms → cellular organisms → Bacteria	1227	Open in IMG/M
3300005163\|Ga0066823_10058980	All Organisms → cellular organisms → Bacteria	712	Open in IMG/M
3300005164\|Ga0066815_10014757	All Organisms → cellular organisms → Bacteria	1020	Open in IMG/M
3300005165\|Ga0066869_10006293	Not Available	1506	Open in IMG/M
3300005172\|Ga0066683_10917791	All Organisms → cellular organisms → Bacteria	501	Open in IMG/M
3300005187\|Ga0066675_10093928	All Organisms → cellular organisms → Bacteria	1964	Open in IMG/M
3300005334\|Ga0068869_101144009	Not Available	682	Open in IMG/M
3300005336\|Ga0070680_101439529	Not Available	597	Open in IMG/M
3300005337\|Ga0070682_100041170	All Organisms → cellular organisms → Bacteria	2847	Open in IMG/M
3300005338\|Ga0068868_100464129	All Organisms → cellular organisms → Bacteria	1103	Open in IMG/M
3300005338\|Ga0068868_100627139	Not Available	955	Open in IMG/M
3300005367\|Ga0070667_100184913	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	1844	Open in IMG/M
3300005434\|Ga0070709_10365777	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1069	Open in IMG/M
3300005435\|Ga0070714_100067796	All Organisms → cellular organisms → Bacteria	3078	Open in IMG/M
3300005435\|Ga0070714_100141183	All Organisms → cellular organisms → Bacteria	2162	Open in IMG/M
3300005435\|Ga0070714_101094820	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	776	Open in IMG/M
3300005436\|Ga0070713_100065166	All Organisms → cellular organisms → Bacteria	3059	Open in IMG/M
3300005437\|Ga0070710_10029945	All Organisms → cellular organisms → Bacteria	2925	Open in IMG/M
3300005437\|Ga0070710_10203778	Not Available	1250	Open in IMG/M
3300005439\|Ga0070711_101624118	Not Available	565	Open in IMG/M
3300005456\|Ga0070678_100193259	Not Available	1675	Open in IMG/M
3300005543\|Ga0070672_100383627	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1202	Open in IMG/M
3300005544\|Ga0070686_100288678	All Organisms → cellular organisms → Bacteria	1213	Open in IMG/M
3300005547\|Ga0070693_100061862	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	2178	Open in IMG/M
3300005564\|Ga0070664_100264454	All Organisms → cellular organisms → Bacteria	1548	Open in IMG/M
3300005574\|Ga0066694_10606067	All Organisms → cellular organisms → Bacteria	510	Open in IMG/M
3300005578\|Ga0068854_100493834	Not Available	1030	Open in IMG/M
3300005587\|Ga0066654_10463940	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	693	Open in IMG/M
3300005598\|Ga0066706_10901193	Not Available	689	Open in IMG/M
3300005615\|Ga0070702_100627167	All Organisms → cellular organisms → Bacteria	810	Open in IMG/M
3300005764\|Ga0066903_102348436	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1031	Open in IMG/M
3300006032\|Ga0066696_10276311	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1089	Open in IMG/M
3300006046\|Ga0066652_100667816	All Organisms → cellular organisms → Bacteria	987	Open in IMG/M
3300006173\|Ga0070716_100499928	Not Available	896	Open in IMG/M
3300006175\|Ga0070712_100395296	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1141	Open in IMG/M
3300006175\|Ga0070712_101512859	Not Available	586	Open in IMG/M
3300006755\|Ga0079222_10000787	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	8183	Open in IMG/M
3300006796\|Ga0066665_10516698	All Organisms → cellular organisms → Bacteria	976	Open in IMG/M
3300006806\|Ga0079220_11101729	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	643	Open in IMG/M
3300006954\|Ga0079219_10385429	All Organisms → cellular organisms → Bacteria	920	Open in IMG/M
3300009012\|Ga0066710_100175555	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3019	Open in IMG/M
3300009012\|Ga0066710_104901253	Not Available	501	Open in IMG/M
3300009093\|Ga0105240_10350833	All Organisms → cellular organisms → Bacteria	1674	Open in IMG/M
3300009101\|Ga0105247_10012628	All Organisms → cellular organisms → Bacteria	5071	Open in IMG/M
3300009137\|Ga0066709_100545593	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1641	Open in IMG/M
3300009148\|Ga0105243_12925352	Not Available	518	Open in IMG/M
3300009553\|Ga0105249_10474590	All Organisms → cellular organisms → Bacteria	1293	Open in IMG/M
3300010154\|Ga0127503_10454939	All Organisms → cellular organisms → Bacteria	845	Open in IMG/M
3300010320\|Ga0134109_10417542	Not Available	539	Open in IMG/M
3300010373\|Ga0134128_11800258	Not Available	674	Open in IMG/M
3300010403\|Ga0134123_13609976	Not Available	502	Open in IMG/M
3300011107\|Ga0151490_1840054	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1066	Open in IMG/M
3300011119\|Ga0105246_12004049	All Organisms → cellular organisms → Bacteria	559	Open in IMG/M
3300012208\|Ga0137376_11743031	Not Available	513	Open in IMG/M
3300012898\|Ga0157293_10351634	Not Available	505	Open in IMG/M
3300012951\|Ga0164300_10028175	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2032	Open in IMG/M
3300012958\|Ga0164299_10013299	All Organisms → cellular organisms → Bacteria	3152	Open in IMG/M
3300012958\|Ga0164299_10845800	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	658	Open in IMG/M
3300012960\|Ga0164301_10126987	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1518	Open in IMG/M
3300012960\|Ga0164301_11725684	Not Available	524	Open in IMG/M
3300012961\|Ga0164302_11058448	All Organisms → cellular organisms → Bacteria	637	Open in IMG/M
3300012984\|Ga0164309_11257107	All Organisms → cellular organisms → Bacteria	624	Open in IMG/M
3300012987\|Ga0164307_10253006	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1231	Open in IMG/M
3300012988\|Ga0164306_10074812	All Organisms → cellular organisms → Bacteria	2135	Open in IMG/M
3300013102\|Ga0157371_10265259	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	1238	Open in IMG/M
3300013105\|Ga0157369_10638659	Not Available	1098	Open in IMG/M
3300013308\|Ga0157375_10137100	All Organisms → cellular organisms → Bacteria	2572	Open in IMG/M
3300014829\|Ga0120104_1127720	Not Available	519	Open in IMG/M
3300016341\|Ga0182035_10590633	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	959	Open in IMG/M
3300018433\|Ga0066667_10650693	Not Available	881	Open in IMG/M
3300018482\|Ga0066669_11518517	Not Available	609	Open in IMG/M
3300018482\|Ga0066669_11784122	Not Available	568	Open in IMG/M
3300020080\|Ga0206350_11607617	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	571	Open in IMG/M
3300021363\|Ga0193699_10390276	Not Available	578	Open in IMG/M
3300022898\|Ga0247745_1062080	Not Available	604	Open in IMG/M
3300025321\|Ga0207656_10558094	Not Available	583	Open in IMG/M
3300025899\|Ga0207642_10630447	Not Available	670	Open in IMG/M
3300025911\|Ga0207654_10074238	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2029	Open in IMG/M
3300025915\|Ga0207693_10134672	All Organisms → cellular organisms → Bacteria	1942	Open in IMG/M
3300025915\|Ga0207693_10985111	Not Available	644	Open in IMG/M
3300025917\|Ga0207660_10429406	Not Available	1067	Open in IMG/M
3300025918\|Ga0207662_10174081	All Organisms → cellular organisms → Bacteria	1382	Open in IMG/M
3300025927\|Ga0207687_10067093	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2551	Open in IMG/M
3300025928\|Ga0207700_10069726	All Organisms → cellular organisms → Bacteria	2699	Open in IMG/M
3300025932\|Ga0207690_10101041	All Organisms → cellular organisms → Bacteria	2059	Open in IMG/M
3300025939\|Ga0207665_10103891	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1988	Open in IMG/M
3300025939\|Ga0207665_11668890	Not Available	505	Open in IMG/M
3300026075\|Ga0207708_10541574	Not Available	981	Open in IMG/M
3300026550\|Ga0209474_10650843	Not Available	542	Open in IMG/M
3300027288\|Ga0208525_1036250	Not Available	607	Open in IMG/M
3300027401\|Ga0208637_1011154	All Organisms → cellular organisms → Bacteria	914	Open in IMG/M
3300027765\|Ga0209073_10001121	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	5341	Open in IMG/M
3300028755\|Ga0307316_10191828	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	735	Open in IMG/M
3300028784\|Ga0307282_10107826	All Organisms → cellular organisms → Bacteria	1298	Open in IMG/M
3300028784\|Ga0307282_10442397	Not Available	631	Open in IMG/M
3300028824\|Ga0307310_10111870	All Organisms → cellular organisms → Bacteria	1226	Open in IMG/M
3300028824\|Ga0307310_10405802	Not Available	677	Open in IMG/M
3300028828\|Ga0307312_10213788	Not Available	1241	Open in IMG/M
3300028875\|Ga0307289_10088104	All Organisms → cellular organisms → Bacteria	1261	Open in IMG/M
3300028884\|Ga0307308_10141374	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	1152	Open in IMG/M
3300031170\|Ga0307498_10360729	Not Available	561	Open in IMG/M
3300031231\|Ga0170824_101778857	Not Available	772	Open in IMG/M
3300031366\|Ga0307506_10049077	Not Available	1221	Open in IMG/M
3300031543\|Ga0318516_10341027	Not Available	865	Open in IMG/M
3300031546\|Ga0318538_10710254	Not Available	545	Open in IMG/M
3300031640\|Ga0318555_10801837	Not Available	508	Open in IMG/M
3300031740\|Ga0307468_101109017	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	706	Open in IMG/M
3300031779\|Ga0318566_10437587	Not Available	642	Open in IMG/M
3300031858\|Ga0310892_10952723	Not Available	603	Open in IMG/M
3300031938\|Ga0308175_100100200	All Organisms → cellular organisms → Bacteria	2667	Open in IMG/M
3300031942\|Ga0310916_10724142	Not Available	841	Open in IMG/M
3300032074\|Ga0308173_12220394	All Organisms → cellular organisms → Bacteria	518	Open in IMG/M
3300032261\|Ga0306920_103369933	Not Available	594	Open in IMG/M
3300033233\|Ga0334722_10090287	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2338	Open in IMG/M
3300034820\|Ga0373959_0200328	Not Available	527	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	81.03%
Host-Associated	Host-Associated	18.97%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	79.31%
Plants	Host-Associated → Plants	18.97%
Aquatic	Environmental → Aquatic	1.72%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	79.31%
Rhizosphere	Host-Associated → Plants → Rhizosphere	12.93%
Rhizoplane	Host-Associated → Plants → Rhizoplane	6.03%
Freshwater	Environmental → Aquatic → Freshwater	1.72%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	57.76%
Loam	Environmental → Terrestrial → Soil → Loam	21.55%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	8.62%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	5.17%
Soil	Host-Associated → Plants → Rhizosphere → Soil	4.31%
Lake	Environmental → Aquatic → Freshwater → Lake	0.86%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.86%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.86%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	27.59%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	20.69%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	12.93%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	8.62%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	7.76%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	6.03%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	5.17%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	4.31%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	2.59%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	0.86%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.86%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.86%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.86%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.86%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	18.10%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	13.79%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	7.76%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	5.17%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	5.17%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	4.31%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	3.45%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	3.45%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	2.59%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	2.59%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	2.59%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.59%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.72%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.72%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.72%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	1.72%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.72%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.72%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.72%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.72%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.72%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	0.86%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.86%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.86%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.86%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.86%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.86%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	0.86%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.86%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.86%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.86%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.86%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.86%
Rhizosphere Soil	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil	0.86%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.86%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.86%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300005163	Soil and rhizosphere microbial communities from Laval, Canada - mgHMB	Environmental	Open in IMG/M
3300005164	Soil and rhizosphere microbial communities from Laval, Canada - mgLAC	Environmental	Open in IMG/M
3300005165	Soil and rhizosphere microbial communities from Laval, Canada - mgHMC	Environmental	Open in IMG/M
3300005172	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132	Environmental	Open in IMG/M
3300005187	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124	Environmental	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005336	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG	Environmental	Open in IMG/M
3300005337	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG	Environmental	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005367	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG	Host-Associated	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005543	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG	Host-Associated	Open in IMG/M
3300005544	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG	Environmental	Open in IMG/M
3300005547	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG	Environmental	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005574	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_143	Environmental	Open in IMG/M
3300005578	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2	Host-Associated	Open in IMG/M
3300005587	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_103	Environmental	Open in IMG/M
3300005598	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155	Environmental	Open in IMG/M
3300005615	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006032	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145	Environmental	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009093	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG	Host-Associated	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300010154	Soil microbial communities from Willow Creek, Wisconsin, USA - WC-WI-TBF metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010320	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_11112015	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300011107	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHAC (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012898	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S194-509B-1	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300013102	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG	Host-Associated	Open in IMG/M
3300013105	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014829	Permafrost microbial communities from Nunavut, Canada - A10_35cm_6M	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300020080	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-4 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300021363	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3c2	Environmental	Open in IMG/M
3300022898	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S109-311C-5	Environmental	Open in IMG/M
3300025321	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025899	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025911	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025917	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025918	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025932	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026075	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026550	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145 (SPAdes)	Environmental	Open in IMG/M
3300027288	Soil and rhizosphere microbial communities from Laval, Canada - mgHMC (SPAdes)	Environmental	Open in IMG/M
3300027401	Soil and rhizosphere microbial communities from Laval, Canada - mgLAC (SPAdes)	Environmental	Open in IMG/M
3300027765	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100 (SPAdes)	Environmental	Open in IMG/M
3300028755	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_356	Environmental	Open in IMG/M
3300028784	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_121	Environmental	Open in IMG/M
3300028824	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_197	Environmental	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300028875	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_143	Environmental	Open in IMG/M
3300028884	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_195	Environmental	Open in IMG/M
3300031170	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 12_S	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031366	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 25_S	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031640	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031779	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f22	Environmental	Open in IMG/M
3300031858	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D2	Environmental	Open in IMG/M
3300031938	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300032074	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R1	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033233	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C3_bottom	Environmental	Open in IMG/M
3300034820	Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_2	Host-Associated	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0062589_1001726862	3300004156	Soil	MQTSDRTIALILVGVLAVMLWPIWLAAVAAERQFTWTVVASGLIPLAFSLLVIATALRLPSRLAHRYQHGIHALGERLHAGTHRHA*
Ga0062589_1003090892	3300004156	Soil	MNDHQGESNRGIALALVGVMAVMLWPVWLAVVASERSFTWTVAASALIPFVVSLAVIVAALRLPSRLAHHYEHALHALGDRLHAGLHRHA*
Ga0066823_100589801	3300005163	Soil	MQSSDRTIALILVGVLAVMLWPIWLAAVAAERQFTWTVVASGLIPLAFSLLVIAAALRLPSRLAHRYQHGIHALGERLHA
Ga0066815_100147572	3300005164	Soil	MQSSDRTIALILVGVLAVMLWPIWLAAVAAERQFTWTVVASGLIPLAFSLLVIAAALRLPSRLAHRYQHGIHTLGERLHAGTHRHA*
Ga0066869_100062931	3300005165	Soil	MQSSDRTIALILVGVLAVMLWPIWLAAVAAERQLTWTVVASGLIPLAFSLLVIAAALRLPSRLAHRYQHGIHTLGERLHAGTHRHA*
Ga0066683_109177911	3300005172	Soil	MTDNDRRGESSRGIALGLVGVMAVMLWPVWLAVVAAERTFTWTVAASALIPLAVSLGVIAAALRLPSRLAHRYEHALHALGDRLHAGLHRHA*
Ga0066675_100939282	3300005187	Soil	MTDNDSRGESSRGIAIALVGVMAVMLWPVWLAVVAAERTFTWTVAASALIPLAVSLGVIAAALRLPSRVAHHYEHALHTLGDRLHAGLHRHA*
Ga0068869_1011440091	3300005334	Miscanthus Rhizosphere	MQSSDRTIALILVGVLAVMLWPIWLAAVAAERQFTWTVVASGLIPLAFSLLVIATALRLPSRLAHRYQHGIHALGERLHAGTHRHA*
Ga0070680_1014395292	3300005336	Corn Rhizosphere	VLAVMLWPIWLAAVAAERQFTWTVVASGLIPLAFSLLVIATALRLPSRLAHRYQHGIHALGERLHAGTHRHA*
Ga0070682_1000411702	3300005337	Corn Rhizosphere	MQTSDRTIALILMGVLAVMLWPIWLAAVAAERQFTWTVVASGLIPLAFSLLVIAAALRLPSRLAHRYQHGIHALGERLHAGTHRHA*
Ga0068868_1004641291	3300005338	Miscanthus Rhizosphere	MQSSDRTIALILVGVLAVMLWPIWLAAVASERQFTWAVVASGLIPLAFSLLVIAAALRLPSRLAHRYQHGIHALGERLHAGTHRHA*
Ga0068868_1006271391	3300005338	Miscanthus Rhizosphere	MQREPSSRPIAYALLGVLAVMMWPIWLAVVAAEPTWTWTVAASALIPLAFGLGVIACAMRLPQRLGHSGHEAAHHVNERLHAGTHRHA*
Ga0070667_1001849131	3300005367	Switchgrass Rhizosphere	AVMLWPIWLAAVAAERQFTWTVVASGLIPLAFSLLVIATALRLPSRLAHRYQHGIHALGERLHAGTHRHA*
Ga0070709_103657772	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MNGRNDSRGIALALVGVLAVMLWPIWIAVAAAEHTWTWAVTASGLIPLAVSLGVIAAALRLPERLVHRTDGARHRLGARLHAGTHGHA*
Ga0070714_1000677961	3300005435	Agricultural Soil	MDRRPDSARGIAYALVGVMAVMLWPVWLAVVAAERSFTWMVAASALIPLGVSVGVIVLAMRLPSRLAHHYEPAWHRLGARLHAGTHRHA*
Ga0070714_1001411832	3300005435	Agricultural Soil	MQSSDRTIALILIGVIAVMLWPIWLAAVAAERQFTWTVAATALLPLAFSLLVIAAALRLPSRLAHRYQHGIHALGERLHAGTHRHA*
Ga0070714_1010948202	3300005435	Agricultural Soil	MGRSDSSRGIALALVGVLAVMLWPIWLAVAAAERSWTWTVAASALIPLAVSVGVIAVALRLPDRLYHHYEGGLHRLAHRLHAGTHRHA*
Ga0070713_1000651662	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MQSSDRTIALILIGVIAVMLWPIWLAAVAAERQFTWTVAATALLPLAFSLLVIAAAVRLPSRLAHRYQHGIHALGERLHAGTHRHA*
Ga0070710_100299451	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MQSSDRTIALILIGVIAVMLWPIWLAAVAAERQFTWTVAATALLPLAFSLLVIAAALRLPSRLAHRYQHGVHALGERLHAGTHRHA*
Ga0070710_102037781	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MQTSDRTIALILVGVLAVMLWPIWLAAVAAERQFTWTVAATALLPLAFSLLVIAAALRLPSRLAHRYQHGIHALGERLHAGTHRHA*
Ga0070711_1016241182	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MQSSDRTIALILVGVLAVMLWPIWLAAVAAERQFTWTVVASGLIPLAFSLLVIAAALRLPSRLAHRYQHGIHALGERLHAGTHRHA*
Ga0070678_1001932592	3300005456	Miscanthus Rhizosphere	MQTSDRTIALILVGVLAVMLWPIWLAAVAAERQFTWTVVASGLIPLAFSLLVIAAALRLPSRLAHRYQHGIHALGERLHAGTHRHA*
Ga0070672_1003836271	3300005543	Miscanthus Rhizosphere	TEAEMQSSDRTIALILVGVLAVMLWPIWLAAVASERQFTWAVVASGLIPLAFSLLVIAAALRLPSRLAHRYQHGIHALGERLHAGTHRHA*
Ga0070686_1002886782	3300005544	Switchgrass Rhizosphere	MQTSDRTIALILMGVLAVMLWPIWLAAVAAERQFTWTVVASGLIPLAFSLLVIATALRLPSRLAHRYQHGIHALGERLHAGTHRHA*
Ga0070693_1000618623	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	PIWLAAVAAERQFTWTVVASGLIPLAFSLLVIATALRLPSRLAHRYQHGIHALGERLHAGTHRHA*
Ga0070664_1002644541	3300005564	Corn Rhizosphere	PIWLAAVAAERQFTWTVVASGLIPLAFSLLVIAAALRLPSRLAHRYQHGIHALGERLHAGTHRHA*
Ga0066694_106060672	3300005574	Soil	MTDNDRRGESSRGIAIALVGVMAVMLWPVWLAVVAAERTFTWTVAASALIPLAVSLGVIAAALRLPSRVAHHYEHALHTLGDRLHAGLHRHA*
Ga0068854_1004938342	3300005578	Corn Rhizosphere	RTIALILVGVLAVMLWPIWLAAVASERQFTWAVVASGLIPLAFSLLVIAAALRLPSRLAHRYQHGIHALGERLHAGTHRHA*
Ga0066654_104639401	3300005587	Soil	GVLAVMLWPIWIAVAAAEHTWTWAVTASGLIPLAVSLGVIAAALRLPERLVHRTDGARHRLGARLHAGTHGHA*
Ga0066706_109011931	3300005598	Soil	LVGVMAVMLWPVWLAVVAAERTFTWTVAASALIPLAVSLGVIAAALRLPSRVAHHYEHALHTLGDRLHAGLHRHA*
Ga0070702_1006271672	3300005615	Corn, Switchgrass And Miscanthus Rhizosphere	MQTSDRTIALILVGVLAVMLWPIWLAAVAAERQFTWTVVASGLIPLAFSLLVIATALRLPSRLAHRYQHGIHALAERLHAGTRRHA*
Ga0066903_1023484362	3300005764	Tropical Forest Soil	MGRRDSSRGIALALVGVLAVMLWPIWLAVAAAERSWTWTVAASALIPLAVSVGVIAVALRLPDRLYHHYEGGLHRLAHRLHAGTHRHA*
Ga0066696_102763111	3300006032	Soil	ALALLGVLAVMLWPIWLAVAAAERTWTWTVAASALIPLAVSLGVIAAALRLPERIVHHYGGPLHRLGERLHAGTHRHA*
Ga0066652_1006678161	3300006046	Soil	MNNDHRGESSRGIALALVGVMAVMLWPVWLAVVAAERTFTWMVAASALIPLAVSLGVIVAALRLPSRLAHHYEHGLHALGDRLHA
Ga0070716_1004999281	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	LWPIWLAAVAAERQFTWTVVASGLIPLAFSLLVIAAALRLPSRLAHRYQHGIHALGERLHAGTHRHA*
Ga0070712_1003952963	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MQSSDRTIALILIGVIAVMLWPIWLAAVAAERQFTWTVAATALLPLAFSLLVIAAALRLPSRLAHRYQHGIHALGERLHA
Ga0070712_1015128592	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	IWLAAVASERQFTWAVVASGLIPLAFSLLVIAAALRLPSRLAHRYQHGIHALGERLHAGTHRHA*
Ga0079222_100007877	3300006755	Agricultural Soil	MQSSDRTIALILVGVLAVMLWPIWLAAVAAERQFTWAVVVSGLIPLAFSLLVIATALRLPSRLAHRYQHGIHALGERLHAGTHRHA*
Ga0066665_105166982	3300006796	Soil	MTDNDRRGESSRGIAIALVGVMAVMLWPVWLAVVASERSFTWTVAASALIPFAVSLAVIVAALRLPSRLAHHYEHALHALGDRLHAGLHRHA*
Ga0079220_111017291	3300006806	Agricultural Soil	MDRRPDSARGIAYALVGVMAVMLWPVWLAGVAAERSFTWMVAASALIPLGVSVGVIVLAMRLPSRLAHHYEPAWHRLGARLHAGTHRHA*
Ga0079219_103854292	3300006954	Agricultural Soil	MDRRPDSARGIAYALVGVMAVMLWPVWLAVVAAERSFTWMVAASALIPLAVSVGVIVFALRLPSRLAHHYEHALHRLGERLHAGTHRHA*
Ga0066710_1001755553	3300009012	Grasslands Soil	MTDNDRRGESSRGIALGLVGVMAVMLWPVWLAVVAAERTFTWTVAASALIPLAVSLGVIAAALRLPSRLAHRYEHALHALGDRLHAGLHRHA
Ga0066710_1049012532	3300009012	Grasslands Soil	MNDDHRGESSRGIALALVSVMAVMLWPVWLAAAAAERTFTWTVAASALIPLAVSVGVIVAALRLPSRLAQRYDHAPHPLGDPLH
Ga0105240_103508331	3300009093	Corn Rhizosphere	AADQPGTEAEMQTSDRTIALILVGVLAVMLWPIWLAAVAAERQFTWTVVASGLIPLAFSLLVIAAALRLPSRLAHRYQHGIHALGERLHAGTHRHA*
Ga0105247_100126285	3300009101	Switchgrass Rhizosphere	MEAEMQTSDRTIALILMGVLAVMLWPIWLAAVAAERQFTWTVVASGLIPLAFSLLVIAAALRLPSRLAHRYQHGIHALGERLHAGTHRHA*
Ga0066709_1005455933	3300009137	Grasslands Soil	MAVMLWPVWLAVVAAERTFTWTVAASALIPLAVSLGVIAAALRLPSRVAHHYEHALHTLGDRLHAGLHRHA*
Ga0105243_129253522	3300009148	Miscanthus Rhizosphere	EDAMQREPSSRPIAYALLGVLAVMMWPIWLAVVAAEHTWTWTVAASALIPLAFGLGVIACAMRLPQRLGHSGHEAAHHVNERLHAGTHRHA*
Ga0105249_104745901	3300009553	Switchgrass Rhizosphere	MQTSDRTIALILVGVLAVMLWPIWLAAVASERQFTWAVVASGLIPLAFSLLVIAAALRLPSRLAHRYQHGIHALGERLHAGTHRHA*
Ga0127503_104549392	3300010154	Soil	MEAEMQTSDRTIALILVGVLAVMLWPIWLAAVAAERQFTWTVAATALIPLAFTLLVVAAALRLPSRLAHRYQHGIHALGERLHAGTHRHA*
Ga0134109_104175422	3300010320	Grasslands Soil	MTDNDRRGESSRGIALGLVGVMAVMLWPVWLAVVAAERTFTWTVAVSALIPLAVSLGVIVAALRLPSRLAHHYEHALHRLGDRLHAGLHRHA*
Ga0134128_118002581	3300010373	Terrestrial Soil	MEAEMQTSDRTIALILMGVLAVMLWPIWLAAVAAERQFTWTVVASGLIPLAFSLLVIATALRLPSRLAHRYQHGIHALGER
Ga0134123_136099761	3300010403	Terrestrial Soil	AVMLWPIWLAAVAAERQFTWTVVASGLIPLAFSLLVIAAALRLPSRLAHRYQHGIHALGERLHAGTHRHA*
Ga0151490_18400541	3300011107	Soil	MQSSDRTIALILVGVLAVMLWPIWLAAVAAERQFTWTVVASGLIPLAFSLLVIAAALRLPSRLAHRYQHGIHTLGERLHAGS
Ga0105246_120040492	3300011119	Miscanthus Rhizosphere	MEAEMQTSDRTIALILMGVLAVMLWPLWLAAVAAERQFTWTVVASGLIPLAFSLLVIAAALRLPSRLAHRYQHGIHALGERLHAGTHRHA*
Ga0137376_117430311	3300012208	Vadose Zone Soil	MNDHQAESSRRIALALVGVMAVMLWPVWLAVVASERSFTWTVAASALIPFVVSLAVIVAARRVPSRLAHHYDHALHALGDRLHAGLHRHA*
Ga0157293_103516342	3300012898	Soil	SDRTIALILVGVLAVMLWPIWLAAVAAERQFTWTVVASGLIPLAFSLLVIATALRLPSRLAQRYQHGIHALGERLHAGTHRHA*
Ga0164300_100281751	3300012951	Soil	VLAVMLWPIWLAAVAAERQFTWTVVASGLIPLAFSLLVIAAALRLPSRLAHRYQHGIHALGERLHAGTHRHA*
Ga0164299_100132994	3300012958	Soil	MQSSDRTIALILVGVLAVMLWPIWLAAVAAERQFTWTVVASGLIPLAFSLLVIAAALRLPSRLAHRYQHGMHALGERLHAGTHRHA*
Ga0164299_108458001	3300012958	Soil	MDRTIALILVGVLAVMLWPVWLAAVAAERQFTWTVAATALLPLAFSLLVIAAALRLPSRLAHRYQHGVHALGER
Ga0164301_101269872	3300012960	Soil	MDRTIALILVGVLAVMLWPVWLAAVAAERQFTWTVAATALLPLAFSLLVIAAALRLPSRLAHRYQHGVHALGERLHAGSHRHA*
Ga0164301_117256841	3300012960	Soil	PIAYALLGVLAVMMWPIWLAVVAAEHTWTWTVAASALITLAFGLGVIACAMRLPQRLGHSGHEAAHHVNERLHAGTHRHA*
Ga0164302_110584482	3300012961	Soil	MQTSDRTIALILVGVLAVMLWPIWLAAVAAERQFTWTVVASGLIPLAFSLLVIATALRLPSRLAHRYQHGIHALGERLHAGTH
Ga0164309_112571071	3300012984	Soil	ILVGVLAVMLWPIWLAAVAAERQFTWTVAATALLPLAFSLLVIAAALRLPSRLAHRYQHGVHALGERLHAGSHRHA*
Ga0164307_102530061	3300012987	Soil	MDRTIALILVGVLAVMLWPVWLAAVAAERQFTWTVAATALLPLAFSLLEIAAALRLPSRLAHRYQHGVHALGERLHAGSHRHA*
Ga0164306_100748123	3300012988	Soil	MQSSDRTIALILVGVLAVMLWPIWLAAVAVERQFTWTVVASGLIPLAFSLLVIAAALRLPSRLAHRYQHGIHALGERLHAGTHRHA*
Ga0157371_102652591	3300013102	Corn Rhizosphere	TALLGALLFAEPITVLRMLAIALILMGVLAVMLWPIWLAAVASERQFTWAVVASGLIPLAFSLLVIAAALRLPSRLAHRYQHGIHALGERLHAGTHRHA*
Ga0157369_106386592	3300013105	Corn Rhizosphere	EMQTSDRTIALILMGVLAVMLWPIWLAAVAAERQFTWTVVASGLIPLAFSLLVIATALRLPSRLAHRYQHGIHALGERLHAGTHRHA*
Ga0157375_101371003	3300013308	Miscanthus Rhizosphere	MQSSDRTIALILVGVLAVMLWPIWLAAVASERQFTWAVVASGLIPLAFSLLVIAAALRLPSRLAHRYQRGIHALGERLHAGTHRHA*
Ga0120104_11277201	3300014829	Permafrost	GVMAVMLWPVWLAAAAAERQFTWTVAATALLPLAFSLLVIAAALRLPSRLAHSYQHGVHALGERLHAGTHRHA*
Ga0182035_105906332	3300016341	Soil	MQRKDSSRGIALVLVGVLAVMLWPIWLAVAAAERSWTWTVAASALVPLAVSVGVIAVALRLPERLYHHYESGLHRLGDRLH
Ga0066667_106506932	3300018433	Grasslands Soil	TDNDRRGESSRGIAIALVGVMAVMLWPVWLAVVAAERTFTWTVAASALIPLAVSLGVIAAALRLPSRVAHHYEHALHTLGDRLHAGLHRHA
Ga0066669_115185172	3300018482	Grasslands Soil	LALVGVLAVMLWPIWLAAVAAERQFTWAVVASGLIPLAFSLLVIAAALRLPSRLAHRYQHGIHALGERLHAGTHRHA
Ga0066669_117841222	3300018482	Grasslands Soil	ALVGVMAVMLWPVWLAVVAAERTFTWTVAASALIPLAVSLGVIAAALRLPSRVAHHYEHALHTLGDRLHAGLHRHA
Ga0206350_116076171	3300020080	Corn, Switchgrass And Miscanthus Rhizosphere	MQTSDRTIALILMGVLAVMLWPIWLAAVAAERQFTWTVVASGLIPLAFSLLVIAAALRLPSRLAHRYQHGIHALGERLHA
Ga0193699_103902762	3300021363	Soil	LALVGVMAVMLWPVWLAVVASERSFTWMVAASALIPFVVSLAVIVAALRLPSRLAHHYEHALHALGDWLHAGLHRHA
Ga0247745_10620802	3300022898	Soil	MQTSDRTIALILVGVLAVMLWPIWLAAVAAERQFTWTVVASGLIPLAFSLLVIATALRLPSRLAHRYQHGIHALGERLHAGTHRHA
Ga0207656_105580942	3300025321	Corn Rhizosphere	MQTSDRTIALILMGVLAVMLWPIWLAAVAAERQFTWTVVASGLIPLAFSLLVIATALRLPSRLAHRYQHGIHALGERLHAGTHRHA
Ga0207642_106304472	3300025899	Miscanthus Rhizosphere	MQSSDRTIALILVGVLAVMLWPIWLAAVAAERQFTWTVVASGLIPLAFSLLVIAAALRLPSRLAHRYQHGIHALGERLHAGTHRHA
Ga0207654_100742383	3300025911	Corn Rhizosphere	VGVLAVMLWPIWLAAVAAERQFTWTVVASGLIPLAFSLLVIAAALRLPSRLAHRYQHGIHALGERLHAGTHRHA
Ga0207693_101346722	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MQSSDRTIALILLGVLAVMLWPIWLAAVAAERQFTWTVAATALLPLAFSLLVVAAALRLPSRLAHRYQHGVHALGERLHAGTHRHA
Ga0207693_109851112	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MNGRNDSRGIALALVGVLAVMLWPIWIAVAAAEHTWTWAVTASGLIPLAVSLGVIAAALRLPERLVHRTDGARHRLGARLHAGTHGHA
Ga0207660_104294062	3300025917	Corn Rhizosphere	VGVLAVMLWPIWLAAVAAERQFTWTVVASGLIPLAFSLLVIATALRLPSRLAHRYQHGIHALGERLHAGTHRHA
Ga0207662_101740812	3300025918	Switchgrass Rhizosphere	MQTSDRTIALILVGVLAVMLWPIWLAAVASERQFTWAVVASGLIPLAFSLLVIAAALRLPSRLAHRYQHGIHALGERLHAGTHRHA
Ga0207687_100670933	3300025927	Miscanthus Rhizosphere	MQREPSSRPIAYALLGVLAVMMWPIWLAVVAAEPTWTWTVAASALIPLAFGLGVIACAMRLPQRLGHSGHEAAHHVNERLHAGTHRHA
Ga0207700_100697263	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	MQTSDRTIALILVGVLAVMLWPIWLAAVAAERQFTWTVAATALLPLAFSLLVIAAALRLPSRLAHRYQHGIHALGERLHAGTHRHA
Ga0207690_101010412	3300025932	Corn Rhizosphere	MQSSDRTIALILVGVLAVMLWPIWLAAVASERQFTWAVVASGLIPLAFSLLVIAAALRLPSRLAHRYQRGIHALGERLHAGTHRHA
Ga0207665_101038913	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	MQSSDRTIALILVGVLAVMLWPIWIAVAAAEHTWTWAVTASGLIPLAVSLGVIAAALRLPERLVHRTDGARHRLGARLHAGTHGHA
Ga0207665_116688902	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	LAVMLWPIWLAAVAAERQFTWTVVASGLIPLAFSLLVIAAALRLPSRLAHRYQHGIHALGERLHAGTHRHA
Ga0207708_105415742	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	VMLWPIWLAAVAAERQFTWTVVASGLIPLAFSLLVIATALRLPSRLAHRYQHGIHALGERLHAGTHRHA
Ga0209474_106508432	3300026550	Soil	MHQRPNTSGRGIALALLGVLAVMLWPIWLAVAAAERTWTWTVAASALIPLAVSLGVIAAALRLPERIVHHYGGPLHRLGERLHAGTHRHA
Ga0208525_10362502	3300027288	Soil	MQSSDRTIALILVGVLAVMLWPIWLAAVAAERQLTWTVVASGLIPLAFSLLVIAAALRLPSRLAHRYQHGIHTLGERLHAGTHRHA
Ga0208637_10111542	3300027401	Soil	MQSSDRTIALILVGVLAVMLWPIWLAAVAAERQFTWTVAATALLPLAFSLLVIAVALRLPSRLAHSYQHGVHALGERLHAGTHRHA
Ga0209073_100011214	3300027765	Agricultural Soil	MQSSDRTIALILVGVLAVMLWPIWLAAVAAERQFTWAVVVSGLIPLAFSLLVIATALRLPSRLAHRYQHGIHALGERLHAGTHRHA
Ga0307316_101918281	3300028755	Soil	TEAEMQSSDRTIALILVGVLAVMLWPIWLAAVAAERQFTWTVVASGLIPLAFSLLVVAAALRLPSRLAHSYQHSVHALGERLHAGTHRHA
Ga0307282_101078262	3300028784	Soil	MQSSDRTIALILVGVLAVMLWPIWLAAVAAERQFTWTVAATALLPLAFSLLVIAVALRLPSRLAHSYQHSVHALGERLHAGTHRHA
Ga0307282_104423972	3300028784	Soil	VWLAVVASERSFTWTVAASALIPFAVSLAVIAAALRLPSRLAHHYDHALHALGDRLHAGLHRHA
Ga0307310_101118702	3300028824	Soil	MNDHQGESSRDIALALVGVMAVMLWPVWLAVAASERSFTWTVAASALIPFVVSLAVIVAALRLPSRLAHHYEHALHALGDWLHAGLHRHA
Ga0307310_104058022	3300028824	Soil	MQSSDRTIALILVGVLAVMLWPVWLAAVAAERQFTWTVAATALLPLAFSLLVIAAALRLPSRLAHSYQHSVHALGERLHAGTHRHA
Ga0307312_102137882	3300028828	Soil	MQSSDRTIALILVGVLAVMLWPIWLAAVAAERQFTWTVAATALLPLAFSLLVVAAALRLPSRLAHSYQHSVHALGERLHAGTHRHA
Ga0307289_100881041	3300028875	Soil	MQSSDRTIALILVGVLAVMLWPIWLAAVAAERQFTWTVVASGLIPLAFSLLVVAAALRLPSRLAHSYQHSVHALGERLHAGTHRHA
Ga0307308_101413741	3300028884	Soil	SRGIALALVGVMAVMLWPVWLAVVASERSFTWTVAASALIPFAVSLAVIVAALRLPSRLAHHYDHALHALGDRLHAGLHRHA
Ga0307498_103607291	3300031170	Soil	MHQQPSSRPIEFALLGVLAVMLWPVWLAAAAAEQTWTWAVAASALIPLAFSLGVIAAAMRLPSRLARRYHDRLHAAGERLHAGTHRHA
Ga0170824_1017788572	3300031231	Forest Soil	MQTSDRTIALILIGVLAVMLWPVWLAAVAAERQFTWTVAATALLPLAFSLLVIAAALRLPSRLAHRYQHGVHALGERLHAGTHRHA
Ga0307506_100490772	3300031366	Soil	VLILVGVLAVMLWPVWLAAVAAERQFTWTVAATALLPLAFSLLVIAAALRLPSRLAHRYQHGVHALGERLHAGSHRHA
Ga0318516_103410271	3300031543	Soil	DSSRGIAVVLVGVLAVMLWPIWLAVAAAERSWTWTVAASALVPLAVSVGVIAVALRLPERLYHHYESGLHRLGDRLHAGTHRHA
Ga0318538_107102541	3300031546	Soil	MQRKDSSRGIALVLVGVLAVMLWPIWLAVAAAERSWTWTVAASALVPLAVSVGVIAVALRLPERLYHHYESGLHRLGDRLHAGTHRHA
Ga0318555_108018372	3300031640	Soil	MQRKDYSRGIALVLVGVLAVMLWPIWLAVAAAERSWTWTVAASALVPLAVSVGVIAVALRLPERLYHHYESGLHRLGDRLHAGTHRHA
Ga0307468_1011090172	3300031740	Hardwood Forest Soil	WPIWLAAVAAERQFTWTVVASGLIPLAFSLLVIAAALRLPSRLAHRYQHGIHALGERLHAGTHRHA
Ga0318566_104375872	3300031779	Soil	LVLVGVLAVMLWPIWLAVAAAERSWTWTVAASALVPLAVSVGVIAVALRLPERLYHHYESGLHRLGDRLHAGTHRHA
Ga0310892_109527232	3300031858	Soil	SDRTIALILMGVLAVMLWPIWLAAVAAERQFTWTVVASGLIPLAFSLLVIAAALRLPSRLAHRYQHGIHALGERLHAGTHRHA
Ga0308175_1001002004	3300031938	Soil	MQTSDRTIALILLGVLAVMLWPIWLAAAAAERQFSWMVVWSGLIPLAFSLLVIAAALRLPSRLVHRYQHGVHALGERLHAGTHRHA
Ga0310916_107241421	3300031942	Soil	KDSSRGIAVVLVGVLAVMLWPIWLAVAAAERSWTWTVAASALVPLAVSVGVIAVALRLPERLYHHYESGLHRLGDRLHAGTHRHA
Ga0308173_122203942	3300032074	Soil	MQTSDRTIALILLGVLAVMLWPIWLAAAAAERQFSWMVVWSGLIPLAFSLLVIAAALRLPSRLAHRYKHGIHAL
Ga0306920_1033699332	3300032261	Soil	SRGIALVLVGVLAVMLWPIWLAVAAAERSWTWTVAASALVPLAVSVGVIAVALRLPERLYHHYESGLHRLGDRLHAGTHRHA
Ga0334722_100902871	3300033233	Sediment	IAFALMGVMAVMLWPIWLAVAAAERSFTWTVAASALIPLAVSVLVIAAALRLPSRLAHGYQHALHRLGERLHAGLHRHA
Ga0373959_0200328_238_498	3300034820	Rhizosphere Soil	MQSSDRTIALILVGVLAVMLWPIWLAAVAAERQFTWTVVASGLIPLAFSLLVIATALRLPSRLAHRYQHGIHALGERLHAGTHRHA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F079114

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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