Metagenome / Metatranscriptome Family F079093

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F079093
Family Type	Metagenome / Metatranscriptome
Number of Sequences	116
Average Sequence Length	58 residues
Representative Sequence	GSINLEPGPSQAVEAVIRSPDRGDEARLLSSFLGWLDRHFGEHLSAVNIKYRHAGRG
Number of Associated Samples	103
Number of Associated Scaffolds	116

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	3.45 %
% of genes near scaffold ends (potentially truncated)	93.97 %
% of genes from short scaffolds (< 2000 bps)	96.55 %
Associated GOLD sequencing projects	100
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.55

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Unclassified (57.759 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (26.724 % of family members)
Environment Ontology (ENVO)	Unclassified (28.448 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (43.966 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 22.35% β-sheet: 0.00% Coil/Unstructured: 77.65%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.55
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.55
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 116 Family Scaffolds
PF13410	GST_C_2	18.97
PF00834	Ribul_P_3_epim	8.62
PF00043	GST_C	7.76
PF05694	SBP56	6.90
PF13417	GST_N_3	6.03
PF00106	adh_short	0.86
PF07883	Cupin_2	0.86
PF03243	MerB	0.86
PF10605	3HBOH	0.86
PF00005	ABC_tran	0.86

COG ID	Name	Functional Category	% Frequency in 116 Family Scaffolds
COG0036	Pentose-5-phosphate-3-epimerase	Carbohydrate transport and metabolism [G]	8.62
COG0435	Glutathionyl-hydroquinone reductase	Energy production and conversion [C]	7.76
COG0625	Glutathione S-transferase	Posttranslational modification, protein turnover, chaperones [O]	7.76

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.76 %
All Organisms	root	All Organisms	42.24 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.76 %
cellular organisms	root	All Organisms → cellular organisms	42.24 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.76 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	42.24 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.76 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	32.76 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1.72 %
Nitrospirae	phylum	All Organisms → cellular organisms → Bacteria → Nitrospirae	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.76 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	22.41 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1.72 %
unclassified Nitrospirae	no rank	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae	0.86 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.76 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	8.62 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1.72 %
Nitrospirae bacterium	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	0.86 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.86 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.76 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	1.72 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1.72 %
Azospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae	0.86 %
unclassified Hyphomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales	0.86 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.86 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	0.86 %
Nitrospirae bacterium	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.76 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	1.72 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.86 %
Trinickia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Trinickia	0.86 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.86 %
Skermanella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Skermanella	0.86 %
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	0.86 %
Nitrospirae bacterium	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.76 %
Wenjunlia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Wenjunlia	1.72 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	0.86 %
unclassified Trinickia	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Trinickia → unclassified Trinickia	0.86 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.86 %
Skermanella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Skermanella	0.86 %
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	0.86 %
Nitrospirae bacterium	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.76 %
Wenjunlia tyrosinilytica	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Wenjunlia → Wenjunlia tyrosinilytica	1.72 %
Trinickia sp. DHG64	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Trinickia → unclassified Trinickia → Trinickia sp. DHG64	0.86 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	0.86 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.86 %
Skermanella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Skermanella	0.86 %
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	0.86 %
Nitrospirae bacterium	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	0.86 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300004080\|Ga0062385_10499989	Not Available	750	Open in IMG/M
3300004635\|Ga0062388_101887561	Not Available	615	Open in IMG/M
3300005187\|Ga0066675_11196607	Not Available	564	Open in IMG/M
3300005363\|Ga0008090_15393023	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	601	Open in IMG/M
3300005435\|Ga0070714_100534509	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1121	Open in IMG/M
3300005439\|Ga0070711_100926278	Not Available	745	Open in IMG/M
3300005591\|Ga0070761_10903073	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	558	Open in IMG/M
3300005598\|Ga0066706_10543432	Not Available	924	Open in IMG/M
3300005764\|Ga0066903_102529412	Not Available	994	Open in IMG/M
3300006173\|Ga0070716_101048590	Not Available	647	Open in IMG/M
3300007076\|Ga0075435_101576000	Not Available	576	Open in IMG/M
3300009177\|Ga0105248_13009769	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	537	Open in IMG/M
3300009521\|Ga0116222_1375143	Not Available	618	Open in IMG/M
3300009683\|Ga0116224_10232755	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	880	Open in IMG/M
3300009826\|Ga0123355_11206814	Not Available	771	Open in IMG/M
3300009840\|Ga0126313_11044468	Not Available	670	Open in IMG/M
3300010042\|Ga0126314_10542577	Not Available	846	Open in IMG/M
3300010047\|Ga0126382_10517465	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	963	Open in IMG/M
3300010048\|Ga0126373_11876539	Not Available	662	Open in IMG/M
3300010358\|Ga0126370_10235974	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1408	Open in IMG/M
3300010376\|Ga0126381_101218550	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1088	Open in IMG/M
3300010379\|Ga0136449_101017304	Not Available	1331	Open in IMG/M
3300011271\|Ga0137393_10305674	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1354	Open in IMG/M
3300012089\|Ga0153924_1016566	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1540	Open in IMG/M
3300012209\|Ga0137379_10098207	All Organisms → cellular organisms → Bacteria → Proteobacteria	2818	Open in IMG/M
3300012209\|Ga0137379_11663537	Not Available	536	Open in IMG/M
3300012351\|Ga0137386_10678691	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	740	Open in IMG/M
3300012948\|Ga0126375_10451016	All Organisms → cellular organisms → Bacteria → Proteobacteria	945	Open in IMG/M
3300012986\|Ga0164304_10044889	All Organisms → cellular organisms → Bacteria → Proteobacteria	2370	Open in IMG/M
3300014151\|Ga0181539_1154452	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	913	Open in IMG/M
3300014168\|Ga0181534_10486369	All Organisms → cellular organisms → Bacteria	696	Open in IMG/M
3300016294\|Ga0182041_11715684	Not Available	581	Open in IMG/M
3300016357\|Ga0182032_10113433	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1940	Open in IMG/M
3300016404\|Ga0182037_10546906	Not Available	977	Open in IMG/M
3300016422\|Ga0182039_11507298	Not Available	612	Open in IMG/M
3300016445\|Ga0182038_11293297	Not Available	652	Open in IMG/M
3300016750\|Ga0181505_11185052	Not Available	539	Open in IMG/M
3300017926\|Ga0187807_1298254	Not Available	535	Open in IMG/M
3300017933\|Ga0187801_10147630	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	914	Open in IMG/M
3300017943\|Ga0187819_10806149	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	527	Open in IMG/M
3300017961\|Ga0187778_11243399	Not Available	523	Open in IMG/M
3300017970\|Ga0187783_11294542	Not Available	525	Open in IMG/M
3300017972\|Ga0187781_11049510	Not Available	597	Open in IMG/M
3300017972\|Ga0187781_11164434	All Organisms → cellular organisms → Bacteria	567	Open in IMG/M
3300017972\|Ga0187781_11227283	Not Available	552	Open in IMG/M
3300017974\|Ga0187777_10246561	Not Available	1212	Open in IMG/M
3300017975\|Ga0187782_10235340	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1374	Open in IMG/M
3300017975\|Ga0187782_10330034	All Organisms → cellular organisms → Bacteria → Proteobacteria	1153	Open in IMG/M
3300017975\|Ga0187782_11306348	Not Available	569	Open in IMG/M
3300018004\|Ga0187865_1263263	Not Available	574	Open in IMG/M
3300018007\|Ga0187805_10528788	Not Available	554	Open in IMG/M
3300018008\|Ga0187888_1217138	All Organisms → cellular organisms → Bacteria	754	Open in IMG/M
3300018020\|Ga0187861_10314073	Not Available	669	Open in IMG/M
3300018026\|Ga0187857_10182628	Not Available	984	Open in IMG/M
3300018037\|Ga0187883_10268892	Not Available	871	Open in IMG/M
3300018062\|Ga0187784_10358660	Not Available	1181	Open in IMG/M
3300018062\|Ga0187784_10403394	All Organisms → cellular organisms → Bacteria → Proteobacteria	1105	Open in IMG/M
3300018062\|Ga0187784_11095936	Not Available	632	Open in IMG/M
3300018062\|Ga0187784_11268945	Not Available	584	Open in IMG/M
3300018085\|Ga0187772_11352964	Not Available	528	Open in IMG/M
3300018086\|Ga0187769_10382651	Not Available	1057	Open in IMG/M
3300018090\|Ga0187770_10317090	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1215	Open in IMG/M
3300020150\|Ga0187768_1117808	Not Available	609	Open in IMG/M
3300020579\|Ga0210407_10009813	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	7149	Open in IMG/M
3300021405\|Ga0210387_11185883	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	663	Open in IMG/M
3300021407\|Ga0210383_10339317	All Organisms → cellular organisms → Bacteria → Proteobacteria	1294	Open in IMG/M
3300021420\|Ga0210394_11564131	All Organisms → cellular organisms → Bacteria → Proteobacteria	556	Open in IMG/M
3300025480\|Ga0208688_1019761	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1748	Open in IMG/M
3300025915\|Ga0207693_10968327	All Organisms → cellular organisms → Bacteria → Proteobacteria	651	Open in IMG/M
3300025916\|Ga0207663_11308185	All Organisms → cellular organisms → Bacteria	584	Open in IMG/M
3300025929\|Ga0207664_11473747	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	602	Open in IMG/M
3300026990\|Ga0207824_1017155	Not Available	774	Open in IMG/M
3300027172\|Ga0208098_1025791	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Trinickia → unclassified Trinickia → Trinickia sp. DHG64	596	Open in IMG/M
3300027765\|Ga0209073_10469653	Not Available	526	Open in IMG/M
3300027911\|Ga0209698_10391250	All Organisms → cellular organisms → Bacteria	1087	Open in IMG/M
3300028795\|Ga0302227_10106251	Not Available	1154	Open in IMG/M
3300030520\|Ga0311372_11211130	Not Available	966	Open in IMG/M
3300030706\|Ga0310039_10341664	Not Available	560	Open in IMG/M
3300030916\|Ga0075386_12191059	All Organisms → cellular organisms → Bacteria	1435	Open in IMG/M
3300031057\|Ga0170834_105263407	Not Available	837	Open in IMG/M
3300031231\|Ga0170824_117383489	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	564	Open in IMG/M
3300031231\|Ga0170824_128832513	Not Available	1513	Open in IMG/M
3300031234\|Ga0302325_13153385	Not Available	528	Open in IMG/M
3300031544\|Ga0318534_10217020	Not Available	1104	Open in IMG/M
3300031561\|Ga0318528_10459221	Not Available	684	Open in IMG/M
3300031718\|Ga0307474_11298335	All Organisms → cellular organisms → Bacteria → Proteobacteria	574	Open in IMG/M
3300031753\|Ga0307477_10815158	Not Available	619	Open in IMG/M
3300031763\|Ga0318537_10373923	All Organisms → cellular organisms → Bacteria → Proteobacteria	526	Open in IMG/M
3300031770\|Ga0318521_10267449	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1001	Open in IMG/M
3300031780\|Ga0318508_1035151	All Organisms → cellular organisms → Bacteria	1285	Open in IMG/M
3300031780\|Ga0318508_1086934	Not Available	860	Open in IMG/M
3300031781\|Ga0318547_10081102	Not Available	1817	Open in IMG/M
3300031796\|Ga0318576_10495307	Not Available	577	Open in IMG/M
3300031798\|Ga0318523_10321928	Not Available	771	Open in IMG/M
3300031805\|Ga0318497_10674147	Not Available	580	Open in IMG/M
3300031821\|Ga0318567_10331109	Not Available	860	Open in IMG/M
3300031823\|Ga0307478_11757026	All Organisms → cellular organisms → Bacteria → Proteobacteria	510	Open in IMG/M
3300031833\|Ga0310917_11182574	Not Available	509	Open in IMG/M
3300031835\|Ga0318517_10052547	Not Available	1711	Open in IMG/M
3300031880\|Ga0318544_10205985	Not Available	759	Open in IMG/M
3300031941\|Ga0310912_10247736	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1370	Open in IMG/M
3300031941\|Ga0310912_11028086	Not Available	631	Open in IMG/M
3300031945\|Ga0310913_11089737	Not Available	558	Open in IMG/M
3300031947\|Ga0310909_11334584	Not Available	576	Open in IMG/M
3300031959\|Ga0318530_10308050	Not Available	655	Open in IMG/M
3300031959\|Ga0318530_10453972	Not Available	532	Open in IMG/M
3300031981\|Ga0318531_10230990	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Wenjunlia → Wenjunlia tyrosinilytica	835	Open in IMG/M
3300032001\|Ga0306922_10976444	Not Available	875	Open in IMG/M
3300032001\|Ga0306922_12389436	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	505	Open in IMG/M
3300032035\|Ga0310911_10775248	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Wenjunlia → Wenjunlia tyrosinilytica	554	Open in IMG/M
3300032039\|Ga0318559_10294062	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Skermanella	754	Open in IMG/M
3300032068\|Ga0318553_10342910	Not Available	782	Open in IMG/M
3300032091\|Ga0318577_10012764	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3351	Open in IMG/M
3300032094\|Ga0318540_10632680	Not Available	515	Open in IMG/M
3300032805\|Ga0335078_12620988	Not Available	516	Open in IMG/M
3300033407\|Ga0214472_11199410	All Organisms → cellular organisms → Bacteria	662	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	96.55%
Host-Associated	Host-Associated	3.45%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	82.76%
Aquatic	Environmental → Aquatic	13.79%
Plants	Host-Associated → Plants	1.72%
Arthropoda	Host-Associated → Arthropoda	0.86%
Fungi	Host-Associated → Fungi	0.86%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	80.17%
Freshwater	Environmental → Aquatic → Freshwater	12.93%
Peat	Environmental → Terrestrial → Peat	2.59%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.72%
Sediment	Environmental → Aquatic → Sediment	0.86%
Digestive System	Host-Associated → Arthropoda → Digestive System	0.86%
Mycelium	Host-Associated → Fungi → Mycelium	0.86%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	56.03%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	15.52%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	12.93%
Loam	Environmental → Terrestrial → Soil → Loam	8.62%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	2.59%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.72%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.86%
Gut	Host-Associated → Arthropoda → Digestive System → Gut	0.86%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified	0.86%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	37.93%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	15.52%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	13.79%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	8.62%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.17%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	3.45%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	3.45%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	2.59%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.72%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.72%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.86%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.86%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.86%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	0.86%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	0.86%
Unclassified	Host-Associated → Arthropoda → Digestive System → Gut → Unclassified	0.86%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified	0.86%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	26.72%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	14.66%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	6.03%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	5.17%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	4.31%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	3.45%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	3.45%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	3.45%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.45%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	2.59%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.59%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	2.59%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	1.72%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	1.72%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	1.72%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.72%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.72%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	1.72%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	0.86%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.86%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.86%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.86%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	0.86%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.86%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.86%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.86%
Termite Gut	Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut	0.86%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.86%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.86%
Attine Ant Fungus Gardens	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens	0.86%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	0.86%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300004080	Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300004635	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300005187	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124	Environmental	Open in IMG/M
3300005363	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005591	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1	Environmental	Open in IMG/M
3300005598	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009521	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_9_AC metaG	Environmental	Open in IMG/M
3300009683	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_b_LC metaG	Environmental	Open in IMG/M
3300009826	Embiratermes neotenicus P1 segment gut microbial communities from Petit-Saut dam, French Guiana - Emb289 P1	Host-Associated	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010042	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105B	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012089	Attine ant fungus gardens microbial communities from New Jersey, USA - TSNJ008 MetaG	Host-Associated	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012351	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaG	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300014151	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_60_metaG	Environmental	Open in IMG/M
3300014168	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_10_metaG	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300016750	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_30_metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300017926	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_2	Environmental	Open in IMG/M
3300017933	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_1	Environmental	Open in IMG/M
3300017943	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4	Environmental	Open in IMG/M
3300017961	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_20_MG	Environmental	Open in IMG/M
3300017970	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017972	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017974	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MG	Environmental	Open in IMG/M
3300017975	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018004	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_100	Environmental	Open in IMG/M
3300018007	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_5	Environmental	Open in IMG/M
3300018008	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_40	Environmental	Open in IMG/M
3300018020	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_100	Environmental	Open in IMG/M
3300018026	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_100	Environmental	Open in IMG/M
3300018037	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_10	Environmental	Open in IMG/M
3300018062	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018085	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018086	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_10_MG	Environmental	Open in IMG/M
3300018090	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300020150	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP10_20_MG	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300025480	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_150 (SPAdes)	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300026990	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 73 (SPAdes)	Environmental	Open in IMG/M
3300027172	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF038 (SPAdes)	Environmental	Open in IMG/M
3300027765	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100 (SPAdes)	Environmental	Open in IMG/M
3300027911	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes)	Environmental	Open in IMG/M
3300028795	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N1_1	Environmental	Open in IMG/M
3300030520	III_Palsa_N2 coassembly	Environmental	Open in IMG/M
3300030706	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_6_BS metaG (v2)	Environmental	Open in IMG/M
3300030916	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FA12 EcM (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031234	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031763	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f29	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031780	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f21	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031796	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24	Environmental	Open in IMG/M
3300031798	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f19	Environmental	Open in IMG/M
3300031805	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23	Environmental	Open in IMG/M
3300031821	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f20	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031835	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f21	Environmental	Open in IMG/M
3300031880	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f25	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031959	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f24	Environmental	Open in IMG/M
3300031981	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f25	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032039	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f21	Environmental	Open in IMG/M
3300032068	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f21	Environmental	Open in IMG/M
3300032091	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f25	Environmental	Open in IMG/M
3300032094	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f25	Environmental	Open in IMG/M
3300032805	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2	Environmental	Open in IMG/M
3300033407	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT140D175	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0062385_104999892	3300004080	Bog Forest Soil	LERVPSQAVEAIIKSPERGDEARLLSSFLGWLDRHFGEHLSSVKIEYRKVDGRSR*
Ga0062388_1018875612	3300004635	Bog Forest Soil	RYKGSVALEPGASDAVNVEIKSPERGDEARLLSSFLGWLDRHFGDQLSSVNIQYAQPSGGGRRHQLLRKRRSR*
Ga0066675_111966071	3300005187	Soil	RYKGSINLEPGESEGVEAVIKSPDRGDEARLLSSLLGWLDRHFGEHLSSVNIKYRQAGRA
Ga0008090_153930231	3300005363	Tropical Rainforest Soil	HVRYKGVVNLEPGLSEAVEVAISSPERGDEARLLSSFLGWLDRHFGEQLSSINIQYQHAAPARRR*
Ga0070714_1005345092	3300005435	Agricultural Soil	HVRYKGSVNLEPGLSQAVEVAISSPERGDEARLLSSFLGWLDRHFGEELSSINIQYQHGAPARRRR*
Ga0070711_1009262781	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	EGVEAVIKSPDRGDEARLLSSFFGWLDRHFGEHLASVSIKYRQAGRA*
Ga0070761_109030731	3300005591	Soil	GLSQAVEVAITSPERGDEARLLSSFLGWLDRHFGEQLSSINIQYQQAVPARHRR*
Ga0066706_105434323	3300005598	Soil	RYKGSINLEPGASEGVEAVIKSPDRGDEARLLSSFLGWLDRHFGEHLSSVSIKYRQAGRA
Ga0066903_1025294121	3300005764	Tropical Forest Soil	SEAVEAVIRSPDRGDEARLLSSFLGWLDRHFGEHLSAVNITYRHAGR*
Ga0070716_1010485901	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	LAPGPSEAVAAVIRSPDRGDESRLLSSFLGWLDRHFGEHLAAVNIKYRQAGRH*
Ga0075435_1015760002	3300007076	Populus Rhizosphere	TRWTHLRYKGSINLAPGPSEAVAAVIRSPDRGDESRLLSSFLGWLDRHFGEHLAAVNIKYRQAGRH*
Ga0105248_130097691	3300009177	Switchgrass Rhizosphere	LEPGLSEAVEVAISSPERGDEARLLSSFLGWLDRHFGEELSSINIQYQHGAPARRRR*
Ga0116222_13751431	3300009521	Peatlands Soil	FEPGPSEAVKFAIKSPERGDEARLLSSFLGWLDRHFGEHLLTVSIEYRQAAGSRRRR*
Ga0116224_102327552	3300009683	Peatlands Soil	YKGSINLEPGLSDAVEVAIKSPEPGDEARLLSSFLGWLDRHFGQHLSSVNIQYQHAGGHRR*
Ga0123355_112068142	3300009826	Termite Gut	MDACPLQGSINFEPGALQAVEVTIKSPDRGDEARLLSSFLGWLDRHFGEHLSSINIEYR*
Ga0126313_110444682	3300009840	Serpentine Soil	RNAAKWAHVRYRGSLNLQSGLSDAVNVKIKSPEAGDEARLLSSFLGWVDRHFGEQVSSVNIQYQPRATKRARARR*
Ga0126314_105425772	3300010042	Serpentine Soil	DAVNVKIKSPETGDEARLLSSFLGWVDRHFGDQVSSVNIQYQPAATKRAGRRR*
Ga0126382_105174653	3300010047	Tropical Forest Soil	RYKGSINFEPGPSEAVEVAIQSPDRGDEARLLSSFLGWLDRHFGEQLSFIKIEYQQAATSRRHRR*
Ga0126373_118765391	3300010048	Tropical Forest Soil	LEPGPSEAVEAVIRSPDRGDEARLLSSFLGWLDRHFGEHLSAVNITYRHAGR*
Ga0126370_102359741	3300010358	Tropical Forest Soil	SQGVEAVIKSPDRGDEARLLSSFLGWLDRHFGEHLSAVNIRYRQTGRG*
Ga0126381_1012185501	3300010376	Tropical Forest Soil	NGARWTHVRYKGSINLEPGPSQAVEAVIRSPDRGDEARLLSSFLGWLDRHFGEHLSAVNIRYRQAGRG*
Ga0136449_1010173042	3300010379	Peatlands Soil	SEAVKVAIKSPERGDEARLLSSFLGWLDRHFGEQLSTVSIEYRRAAGSRRRR*
Ga0137393_103056742	3300011271	Vadose Zone Soil	LEPGESEGVEAVIKSPDRGDEARLLSSFLGWLDRHFGEHLSSVSIKYQRAGRA*
Ga0153924_10165661	3300012089	Attine Ant Fungus Gardens	LSDAVEVAIKSPERGDEARLLSSFLGWLDRHFGDDLSTVSIQYQEAPGRRADGGRRAR*
Ga0137379_100982074	3300012209	Vadose Zone Soil	RSGVRWTHVRYKGSIKLEPGESEGVEAVIKSPDRGDEARLLSSFLGWLDRHFGEHLLSVNIKYQQAGRA*
Ga0137379_116635372	3300012209	Vadose Zone Soil	RSGVRWTHVRYKGSIKLEPGESEGVEAVIKSPDRGDEARLLSSFLGWLDRHFGEHLASVNIKYQ*
Ga0137386_106786912	3300012351	Vadose Zone Soil	SVSLEPGLSDVVTVEIKSPDRGDESRLLSAFLGWLDRHFGDQILSVNIQYHQERPAARRGR*
Ga0126375_104510161	3300012948	Tropical Forest Soil	KGSINLEPGPSQAVEAVIRSPDRGDEARLLSSFLGWLDRHFGEHLSAVNIRYRQAGRG*
Ga0164304_100448894	3300012986	Soil	YKGSVNLEPGLSEAVKVAITSPERGDEARLLSSFLGWLDRHFGEELSSINIQYQHAAPARRRR*
Ga0181539_11544523	3300014151	Bog	YKGSVDLEPGLSDAVEVAIKSPERGDEARLLSSFLGWLDRHFGEQLSAVNIQYQHASGRGRR*
Ga0181534_104863691	3300014168	Bog	KGSLKLKPGESEAVEVAIRSPERGDEARLLSSFLGWLDRHFGDRLSSVNIHYQR*
Ga0182041_117156842	3300016294	Soil	GKRNAARWTHVRYKGSINLEPGPSEAVEAVIRSPDRGDEARLLSSFLGWLDRHFGEHLLAVNIKYRHAGR
Ga0182032_101134331	3300016357	Soil	EPGLSEAVEVAITSPERGDEARLLSSFLGWLDRHFGEHLSSINIQYQHAAPARRRR
Ga0182037_105469061	3300016404	Soil	KGSINLEPGPSEAVEAVIRSPDRGDEARLLSSFLGWLDRHFGEHLLAVNIKYRHAGR
Ga0182039_115072982	3300016422	Soil	VNLEPGLSEAVEVAISSPERGDEARLLSSFLGWLDRHFGEQLSSINIQYQHAAPARRRR
Ga0182038_112932972	3300016445	Soil	PSQAVEAVIRSPDRGDEARLLSSFLGWLDRHFGEHLSAVNIRYRQAGRG
Ga0181505_111850521	3300016750	Peatland	RYKGSINLEPGLSDAVEVAIKSPERGDEARLLSSFLGWLDRHFGEQLSAVNIQYQHASGRGRR
Ga0187807_12982541	3300017926	Freshwater Sediment	NAARWTHIRYKGSINLEPGPSEAVEAVIRSPDRGDEARLLSSFLGWLDRHFGEHLSAVNIKYRQAGRG
Ga0187801_101476301	3300017933	Freshwater Sediment	KGSVNLEPGLSEAVEVAITSPDRGDEARLLSSFLGWLDRHFGEQLSSINIQYQHAAPARRRR
Ga0187819_108061493	3300017943	Freshwater Sediment	GLWVAVEVAIKSPVRGDEARLLSSFLGWLDRHFGEQLSAVNIQYQHASARGRR
Ga0187778_112433992	3300017961	Tropical Peatland	RYKGSLKLHPGTENAVEVEIKSPERGDEARLLSSFLGWMDRHFGDRLSSVNIQYARR
Ga0187783_112945422	3300017970	Tropical Peatland	RYKGSINLEPGESDAVEAVIRSPDRGDEARLLSSFLGWLDRHFGEHLSSVSITYRH
Ga0187781_110495102	3300017972	Tropical Peatland	SVELEPGLSEAVEVAIKSPERGDEARLLSSFLGWLDRHFGEQLSAVNIQYQQAAGRRRR
Ga0187781_111644342	3300017972	Tropical Peatland	VRYKGSVALEPGAADAVNVEIKSPERGDEARLLSSFLGWLDRHFGDELSSVNIEYRRPSAGRRRP
Ga0187781_112272831	3300017972	Tropical Peatland	VSVEIKSPERSDEARLLSSFLGWLDRHFGDQLSSVNIEYQKVAAHRRARR
Ga0187777_102465612	3300017974	Tropical Peatland	SVNLEPGLSEAVEVAITSPERGDEARLLSSFLGWLDRHFGEQLSSINIQYQQAATARRRR
Ga0187782_102353403	3300017975	Tropical Peatland	GPADAVSVEIKSPARSDEARLLSSFLGWLDRHFGDQLSSVNIEYQKVAARHRARR
Ga0187782_103300343	3300017975	Tropical Peatland	YKGSVSLEPGLLEAVEVAITSPEHGDEARLLSAFLGWLDRHFGEQLSSINIQYQQAAPSRRRR
Ga0187782_113063481	3300017975	Tropical Peatland	LSEAVEVAISSPERGDEARLLSSFLGWLDRHFGDELLSINIQYQHAAPTRRR
Ga0187865_12632631	3300018004	Peatland	LEPGLSDAVEVAIKSPERGDEARLLSSFLGWLDRHFGEQLSAVNIQYQHASGRGRR
Ga0187805_105287881	3300018007	Freshwater Sediment	KGSISFESVPPEAVEVAIQSPDRGDEARLLSSFLGWLDRHFGKQLSSIKIEYRQAGGRRRKS
Ga0187888_12171381	3300018008	Peatland	LEPGPSQAVEAVIKSPDRGDEARLLSSFLGWLDRHFGEHLSSINIEYRKAEGSSR
Ga0187861_103140732	3300018020	Peatland	EPGLSDAVEVAIKSPERGDEARLLSSFLGWLDRHFGEQLSAVNIQYQHASGRGRR
Ga0187857_101826283	3300018026	Peatland	PSDAVDVAIRSPDRGDEARLLSSFLGWLDRHFGAQLSSIKIEYSQASAVGHRRR
Ga0187883_102688921	3300018037	Peatland	GSINLEPGLSDAVEVAIKSPERGDEARLLSSFLGWLDRHFGEQLSAVNIQYQHASGRGRR
Ga0187784_103586601	3300018062	Tropical Peatland	VRYKGSVNLEPGLSEAVEVAITSPERGDEARLLSSFLGWLDRHFGDQLSSVSIQYVQPSARR
Ga0187784_104033941	3300018062	Tropical Peatland	DAVNVEIKSPERGDEARLLSSFLGWLDRHFGDELSSVNIEYRQPSAGRRRR
Ga0187784_110959362	3300018062	Tropical Peatland	AGEADAVAAKIRSPEVGDETRLLSSFLGWLDRHFGDSVSSVNIQYEPSAARRRH
Ga0187784_112689451	3300018062	Tropical Peatland	KGSVELEPGLSEAVEVAIKSPERGDEARLLSSFLGWLDRHFGEQLSAVNIQYQQAAGRRR
Ga0187772_113529641	3300018085	Tropical Peatland	PTDAVNVEIKSPERGDEARLLSSFLGWLDRHFGDQLSSVNIEYQKVAGRRSARH
Ga0187769_103826512	3300018086	Tropical Peatland	DAVNVEIKSPERGDEARLLSSFLGWLDRHFGDQLSSVNIEYQKVAGRRSARH
Ga0187770_103170903	3300018090	Tropical Peatland	RYKGALDLKPGEADAVSVRISSSDRGDEARLLSSFLGWLDRHFGGHISSVTIRYQ
Ga0187768_11178082	3300020150	Tropical Peatland	YKGSIELEPGPADAIEVEIKSPERGDEARLLSSFLGWLDRHFGDQLSSVNIEYRRGAGRR
Ga0210407_100098137	3300020579	Soil	GSVNLEPGLSEAVEVAITSPERGDEARLLSSFLGWLDRHFGEELSSINIQYQHAAPARRR
Ga0210387_111858831	3300021405	Soil	LSEAVEVAITSPERGDEARLLSSFLGWLDRHFGEDLSSINIQYQHAAPARRRR
Ga0210383_103393171	3300021407	Soil	SVNLEPGLSEAVKVAITSPERGDEARLLSSFLGWLDRHFGEELSSINIQYQHAAPARRRR
Ga0210394_115641312	3300021420	Soil	VRYKGSVNLEPGLSQAVEVAITSPERGDEARLLSSFLGWLDRHFGEQLSSINIQYQQATAARRRR
Ga0208688_10197613	3300025480	Peatland	LSDAVEVAIKSPERGDEARLLSSFLGWLDRHFGEQLSAVNIQYQHASGRGRR
Ga0207693_109683271	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	GSVNLEPGLSEAVKVAITSPERGDEARLLSSFLGWLDRHFGEELSSINIQYQHAAPARRR
Ga0207663_113081852	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	RYKGSINLAPGPSEAVAAVIRSPDRGDESRLLSSFLGWLDRHFGEHLAAVNIKYRQAGRHSAFREPFQDYEVHD
Ga0207664_114737471	3300025929	Agricultural Soil	THVRYKGSVNLEPGLSQAVEVAISSPERGDEARLLSSFLGWLDRHFGEELSSINIQYQHGAPARRRR
Ga0207824_10171553	3300026990	Tropical Forest Soil	INLEPGPSQAVEAVIRSPDRGDEARLLSSFLGWLDRHFGEHLSAVNIKYRHAGRG
Ga0208098_10257912	3300027172	Forest Soil	GLSEAVEVAITSPERGDEARLLSSFLGWLDRHFGEQLSSINIQYQHAAPARRRR
Ga0209073_104696531	3300027765	Agricultural Soil	RYKGSINLAAGPSEAVEAVIRSPDRGDEARLLSSFLGWLDRHFGEHLSAVNITYRHAGHG
Ga0209698_103912501	3300027911	Watersheds	KGSINLEPGPSQGVEAVIRSPDRGDEARLLSSFLGWLDRHFGEHLSAVNIKYRQAGRG
Ga0302227_101062512	3300028795	Palsa	IDLEPGLSDAVEVAIKSPERGDEARLLSSFLGWLDRHFGEELSSVNIQYQHSGRISRRR
Ga0311372_112111302	3300030520	Palsa	DAVEVAIKSPEPGDEARLLSSFLGWLDRHFGEQLSSVNIQYQRSGRTSRRR
Ga0310039_103416642	3300030706	Peatlands Soil	LEPGLSEAVEVAIKSPEPGDEARLLSSFLGWLDRHFGEHLSSVNIQYQHAGGRGRRR
Ga0075386_121910593	3300030916	Soil	ILEPGASEGVEAVIKSPDRGDEARLLSSFLGWLDRHFGEHLSSVSIKYRQAGRA
Ga0170834_1052634071	3300031057	Forest Soil	GSINLAPGASEGVEAVIKSPDRGDEARLLSSFLGWLDRHFGEHLSSVSIKYRRAGRA
Ga0170824_1173834892	3300031231	Forest Soil	GSVNLEPGLSEAVEVAITSPERGDEARLLSSFLGWLDRHFGEQLSSINIQYQHATPARRR
Ga0170824_1288325131	3300031231	Forest Soil	PGASEGVEAVIKSPDRGDEARLLSSFLGWLDRHFGEHLSSVSIKYRQAGRA
Ga0302325_131533852	3300031234	Palsa	KLEPGSSEAVEVAIKSPEQGDEARLLSSFLGWLDRHFGAHLSSVNIQYRPAAGRGRR
Ga0318534_102170201	3300031544	Soil	RYKGSIHLQAGPSQAVEAVIRSPDRGDEARLLSSFLGWLDRHFGEHLSAVTIRYRKADRS
Ga0318528_104592211	3300031561	Soil	KGSINLAPGPSQAVEAVIRSPDRGDEARLLSSFLGWLDRHFGDHLSAVNIRYRQAGRG
Ga0307474_112983352	3300031718	Hardwood Forest Soil	SEAVEVAISSPERGDEARLLSSFLSWLDRHFGEHLSSINIQYQHAAPARRR
Ga0307477_108151582	3300031753	Hardwood Forest Soil	SINLEPGPSQAVEAVIRSPDRGDEARLLSSFLGWLDRHFGEHLSSINITYRRASRG
Ga0318537_103739233	3300031763	Soil	RYKGSVNLEPGLSEAVEVAISSPERGDEARLLSSFLGWLDRHFGEQLSSINIQYQHAAPARRRR
Ga0318521_102674493	3300031770	Soil	SQAVEAVIRSPDRGDEARLLSSFLGWLDRHFGEHLSAVNIRYRQAGRG
Ga0318508_10351513	3300031780	Soil	LEPGPSQAVEAVIRSPDRGDEARLLSSFLGWLDRHFGDHLSAVNIRYRQAGRG
Ga0318508_10869341	3300031780	Soil	GSINLEPGPSQAVEAVIRSPDRGDEARLLSSFLGWLDRHFGEHLSAVNIKYRHAGRG
Ga0318547_100811021	3300031781	Soil	PSHAVEAVIRSPDRGDEARLLSSFLGWLDRHFGEHLSEVNIRYRQAGRG
Ga0318576_104953071	3300031796	Soil	KGSIHLQAGPSQAVEAVIRSPDRGDEARLLSSFLGWLDRHFGEHLSAVTIRYRKADRS
Ga0318523_103219282	3300031798	Soil	ARWTHIRYKGSINLEPGPSQAVEAVIRSPDRGDEARLLSSFLGWLDRHFGEHLSAVNIKYRHAGRG
Ga0318497_106741472	3300031805	Soil	SINLAPGPSQAVEAVIRSPDRGDEARLLSSFLGWLDRHFGDHLSAVNIRYRQAGRG
Ga0318567_103311091	3300031821	Soil	GSINLEPGPSQAVEAVIRSPDRGDEARLLSSFLGWLDRHFGEHLSEVNIRYRQAGRG
Ga0307478_117570262	3300031823	Hardwood Forest Soil	LSEAVEVAITSPERGDEARLLSSFLGWLDRHFGEQLSSINIQYQHAAPARRRR
Ga0310917_111825742	3300031833	Soil	GKRNAARWTHVRYKGSINLEPGPSEAVEAVIRSPDRGDEARLLSSFLGWLDRHFGEHLSSINIQYQHAAPARRRR
Ga0318517_100525474	3300031835	Soil	GSIHLQAGPSQAVEAVIRSPDRGDEARLLSSFLGWLDRHFGEHLSAVTIRYRKADRS
Ga0318544_102059851	3300031880	Soil	LEPGPSHAVEAVIRSPDRGDEARLLSSFLGWLDRHFGEHLSAVNIRYRQAGRG
Ga0310912_102477364	3300031941	Soil	GSINLEPGPSHAVEAVIRSPDRGDEARLLSSFLGWLDRHFGEHLSEVNIRYRQAGRG
Ga0310912_110280862	3300031941	Soil	GSINLEPGPSQAVEAVIRSPDRGDEARLLSSFLGWLDRHFGDHLSAVNIRYRQAGRG
Ga0310913_110897372	3300031945	Soil	KGSINLEPGPSQAVEAVIRSPDRGDEARLLSSFLGWLDRHFGEHLSAVNIRYRQAGRG
Ga0310909_113345841	3300031947	Soil	GPSQAVEAVIRSPDRGDEARLLSSFLGWLDRHFGEHLSAVNIKYRHGDRG
Ga0318530_103080502	3300031959	Soil	YKGAVNLEPGLSDAVEVAITSPERGDEARLLSSFLGWLDRHFGEHLSSINIQYQHAAPARRRR
Ga0318530_104539722	3300031959	Soil	GKRNVARWTHVRYKGSINLAPGPSQAVEAVIRSPDRGDEARLLSSFLGWLDRHFGDHLSAVNIRYRQAGRG
Ga0318531_102309901	3300031981	Soil	HVRYKGSINLQQGAAEGVEAVIRSPDRGDEARLLSSFLGWLDRHFGEHLAWVNIKYRRA
Ga0306922_109764441	3300032001	Soil	IRYKGSINLEPGPSQAVEAVIRSPDRGDEARLLSSFLGWLDRHFGEHLSAVNIKYRHAGR
Ga0306922_123894361	3300032001	Soil	RYKGSISFEPGPLEAVEVTIQSPERGDEARLMSSFLGWLDRHFGEQLSSISIKYRRGA
Ga0310911_107752481	3300032035	Soil	KGSINLQQGAAEGVEAVIRSPDRGDEARLLSSFLGWLDRHFGEHLAWVNIKYRRA
Ga0318559_102940621	3300032039	Soil	FEPGPLEAVEVTIQSPERGDEARLMSSFLGWLDRHFGEQLLSISIKYRRAA
Ga0318553_103429102	3300032068	Soil	RNSARWTHIRYKGSINLEPGPSQAVEAVIRSPDRGDEARLLSSFLGWLDRHFGEHLSAVNIKYRHAGRG
Ga0318577_100127641	3300032091	Soil	LEPGPSQAVEAVIRSPDRGDEARLLSSFLGWLDRHFGEHLSEVNIRYRQAGRG
Ga0318540_106326801	3300032094	Soil	SIGFEPGPLEAVEVTIQSPERGDEARLMSSFLGWLDRHFGEQLLSISIKYRRAA
Ga0335078_126209881	3300032805	Soil	IALKAGDTDAVSAKIKSPDRGDEARLLSSFLGWLDRHFGKTLSSVSIQYQ
Ga0214472_111994102	3300033407	Soil	GRVELESALADAVGVEINSPDKGDESRLLSAFLGWLDRHFGDQVSSVNIQYQ

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F079093

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences