Metagenome / Metatranscriptome Family F079056

Basic Information
Family ID	F079056
Family Type	Metagenome / Metatranscriptome
Number of Sequences	116
Average Sequence Length	45 residues
Representative Sequence	ALSVLEDKVKKLDLLEIDRKALTAGRLFIDEQAHIGAVSQPDGFA
Number of Associated Samples	102
Number of Associated Scaffolds	116

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	2.63 %
% of genes near scaffold ends (potentially truncated)	91.38 %
% of genes from short scaffolds (< 2000 bps)	85.34 %
Associated GOLD sequencing projects	101
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.48

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Bacteria (82.759 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil (16.379 % of family members)
Environment Ontology (ENVO)	Unclassified (50.862 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (48.276 % of family members)

Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62. 1Ga0062389_1038173572 2Ga0068968_10076635 3Ga0068971_14789292 4Ga0068955_13174492 5Ga0072320_12976472 6Ga0070708_1014138151 7Ga0070734_106553142 8Ga0070733_104071693 9Ga0070732_101735252 10Ga0070717_104185391 11Ga0075019_105435193 12Ga0075015_1002210093 13Ga0075014_1005863641 14Ga0079221_104996491 15Ga0105240_126048461 16Ga0116222_15578092 17Ga0105237_102856781 18Ga0116138_12153032 19Ga0116105_10186611 20Ga0116105_11163081 21Ga0116120_10305043 22Ga0116120_11409352 23Ga0116217_104139682 24Ga0116131_10252943 25Ga0074046_100006631 26Ga0074046_101536941 27Ga0136449_1032418992 28Ga0136806_10227395 29Ga0138566_1262351 30Ga0138582_10208121 31Ga0138595_10215211 32Ga0138584_11195191 33Ga0138559_10055031 34Ga0138560_10712811 35Ga0138562_10575021 36Ga0138579_10484893 37Ga0137393_109892181 38Ga0137366_100206751 39Ga0164303_105449912 40Ga0164303_107310582 41Ga0181524_104700361 42Ga0181530_101470211 43Ga0181530_104072371 44Ga0181529_103672941 45Ga0181532_103502722 46Ga0181535_103618581 47Ga0182016_101434531 48Ga0182024_122354642 49Ga0181536_101836131 50Ga0182027_114350942 51Ga0187802_100314451 52Ga0187802_101007831 53Ga0187803_103575051 54Ga0187821_100562481 55Ga0187817_101382512 56Ga0187778_101629571 57Ga0187778_101820093 58Ga0187783_105777982 59Ga0187782_114715391 60Ga0187816_100589511 61Ga0187816_100851852 62Ga0187816_102276103 63Ga0187870_12286501 64Ga0187815_103836181 65Ga0187878_10182341 66Ga0187878_12007251 67Ga0187884_104111081 68Ga0187873_12193602 69Ga0187872_101400572 70Ga0187886_13189262 71Ga0187885_100136201 72Ga0187857_100197445 73Ga0187869_103594762 74Ga0187863_104537773 75Ga0187855_100115161 76Ga0187862_107156491 77Ga0187772_111830792 78Ga0187772_113699822 79Ga0187769_101820243 80Ga0187770_101299993 81Ga0187797_10720701 82Ga0187797_14061731 83Ga0182022_10838341 84Ga0182031_12744575 85Ga0210406_100001813 86Ga0210400_112474741 87Ga0210405_112728961 88Ga0210408_107103602 89Ga0210391_104158263 90Ga0208194_10012451 91Ga0208188_10935352 92Ga0208820_10196491 93Ga0207692_109796042 94Ga0207639_110135992 95Ga0209113_10416642 96Ga0209446_11943082 97Ga0209656_102628301 98Ga0209040_102865142 99Ga0209415_105260902 100Ga0209415_105558533 101Ga0209415_110160491 102Ga0209583_101319012 103Ga0255358_10260982 104Ga0302197_100246011 105Ga0311358_103345543 106Ga0311333_120404232 107Ga0310037_102915352 108Ga0302192_104297101 109Ga0265765_10193531 110Ga0307373_106771451 111Ga0307479_119821852 112Ga0307472_1014197861 113Ga0335078_119265491 114Ga0335074_114661882 115Ga0335084_104483573 116Ga0314866_020231_3_116
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62. 1Ga0062389_1038173572 2Ga0070734_106553142 3Ga0070717_104185391 4Ga0079221_104996491 5Ga0105237_102856781 6Ga0074046_101536941 7Ga0136449_1032418992 8Ga0136806_10227395 9Ga0164303_107310582 10Ga0187817_101382512 11Ga0187778_101629571 12Ga0187782_114715391 13Ga0187815_103836181 14Ga0187772_111830792 15Ga0187772_113699822 16Ga0187797_10720701 17Ga0210406_100001813 18Ga0209113_10416642 19Ga0311333_120404232 20Ga0335074_114661882 21Ga0335084_104483573
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44. 1Ga0075014_1005863641 2Ga0068968_10076635 3Ga0070734_106553142 4Ga0070733_104071693 5Ga0070732_101735252 6Ga0105240_126048461 7Ga0136806_10227395 8Ga0137366_100206751 9Ga0164303_105449912 10Ga0164303_107310582 11Ga0187817_101382512 12Ga0187778_101629571 13Ga0187778_101820093 14Ga0187782_114715391 15Ga0187815_103836181 16Ga0187772_111830792 17Ga0187772_113699822 18Ga0187797_10720701 19Ga0210405_112728961 20Ga0210391_104158263 21Ga0208188_10935352 22Ga0209113_10416642 23Ga0209583_101319012 24Ga0311333_120404232 25Ga0265765_10193531 26Ga0335078_119265491 27Ga0335074_114661882 28Ga0335084_104483573
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Neighboring Clusters of Orthologous Genes (COGs)

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 50.68% β-sheet: 0.00% Coil/Unstructured: 49.32%
Feature Viewer
Position : 0 Zoom : x 1 + Add Multiple Variants Enter the variants Position Original Variant Get Predictions Get Predictions Enter the variants Position Original Variant A / Ala R / Arg N / Asn D / Asp C / Cys E / Glu Q / Gln G / Gly H / His I / Ile L / Leu K / Lys M / Met F / Phe P / Pro S / Ser T / Thr W / Trp Y / Tyr V / Val
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Structure Viewer
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.48
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.48
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Pfam ID	Name	% Frequency in 116 Family Scaffolds
PF00155	Aminotran_1_2	35.34
PF13442	Cytochrome_CBB3	6.03
PF01558	POR	3.45
PF00582	Usp	2.59
PF07228	SpoIIE	1.72
PF01638	HxlR	1.72
PF03590	AsnA	1.72
PF13618	Gluconate_2-dh3	0.86
PF17147	PFOR_II	0.86
PF00672	HAMP	0.86

COG ID	Name	Functional Category	% Frequency in 116 Family Scaffolds
COG1014	Pyruvate:ferredoxin oxidoreductase or related 2-oxoacid:ferredoxin oxidoreductase, gamma subunit	Energy production and conversion [C]	3.45
COG1733	DNA-binding transcriptional regulator, HxlR family	Transcription [K]	1.72
COG2502	Asparagine synthetase A	Amino acid transport and metabolism [E]	1.72
COG0596	2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase MenH and related esterases, alpha/beta hydrolase fold	Coenzyme transport and metabolism [H]	0.86
COG2353	Polyisoprenoid-binding periplasmic protein YceI	General function prediction only [R]	0.86

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	82.76 %
Unclassified	root	N/A	17.24 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	82.76 %
Unclassified	root	N/A	17.24 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	82.76 %
Unclassified	root	N/A	17.24 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	24.14 %
Unclassified	root	N/A	17.24 %

Name	Rank	Taxonomy	Distribution
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	15.52 %
Unclassified	root	N/A	17.24 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	6.03 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	6.03 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	15.52 %
Unclassified	root	N/A	17.24 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	6.03 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	15.52 %
Unclassified	root	N/A	17.24 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	6.03 %
Candidatus Koribacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	9.48 %
Unclassified	root	N/A	17.24 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	6.03 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	6.03 %
Unclassified	root	N/A	17.24 %

Scaffold	Taxonomy	Length	IMG/M Link
3300004092\|Ga0062389_103817357	All Organisms → cellular organisms → Bacteria	566	Open in IMG/M
3300004474\|Ga0068968_1007663	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	4164	Open in IMG/M
3300004477\|Ga0068971_1478929	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	568	Open in IMG/M
3300004617\|Ga0068955_1317449	All Organisms → cellular organisms → Bacteria	518	Open in IMG/M
3300004970\|Ga0072320_1297647	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	510	Open in IMG/M
3300005445\|Ga0070708_101413815	All Organisms → cellular organisms → Bacteria	649	Open in IMG/M
3300005541\|Ga0070733_10407169	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	906	Open in IMG/M
3300005542\|Ga0070732_10173525	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	1286	Open in IMG/M
3300006028\|Ga0070717_10418539	Not Available	1205	Open in IMG/M
3300006086\|Ga0075019_10543519	All Organisms → cellular organisms → Bacteria	724	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	97.41%
Host-Associated	Host-Associated	2.59%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	40.52%
Plants	Host-Associated → Plants	2.59%
Terrestrial	Environmental → Terrestrial	56.90%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	37.07%
Peat	Environmental → Terrestrial → Peat	4.31%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.86%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.72%
Sediment	Environmental → Aquatic → Sediment	3.45%
Soil	Environmental → Terrestrial → Soil	52.59%

Habitat	Taxonomy	Distribution
Clay	Environmental → Terrestrial → Soil → Clay	0.86%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.86%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.86%
Loam	Environmental → Terrestrial → Soil → Loam	3.45%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	30.17%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	4.31%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.45%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.72%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	36.21%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	18.10%

Habitat	Taxonomy	Distribution
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.86%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.59%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	20.69%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	6.03%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.86%
Mine Drainage	Environmental → Aquatic → Freshwater → Groundwater → Mine Drainage	0.86%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	4.31%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	7.76%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	23.28%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	13.79%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	7.76%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	4.31%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.45%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.72%
Unclassified	Environmental → Terrestrial → Soil → Clay → Unclassified	0.86%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.86%

Habitat	Taxonomy	Distribution
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.86%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	6.03%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	2.59%
Bog	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog	1.72%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	3.45%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	1.72%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.72%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.86%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.59%
Fen	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen	1.72%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	0.86%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.86%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	7.76%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.72%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	11.21%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	7.76%
Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland	2.59%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	16.38%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	0.86%
Sediment	Environmental → Aquatic → Freshwater → Groundwater → Mine Drainage → Sediment	0.86%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	4.31%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.59%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	2.59%
Soil	Environmental → Terrestrial → Soil → Clay → Unclassified → Soil	0.86%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	0.86%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	2.59%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	6.90%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	1.72%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	3.45%

Visualization
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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004474	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 60 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004477	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 65 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004617	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 47 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004970	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005533	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1	Environmental	Open in IMG/M
3300005541	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1	Environmental	Open in IMG/M
3300005542	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M

Showing 1 to 10 of 102 entries

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Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0062389_1038173572	3300004092	Bog Forest Soil	ALSVLEDKVKKLDLLEIDRKALTAGRLFIDDQAHIGAVSQPDGFA*
Ga0068968_10076635	3300004474	Peatlands Soil	ALSVLEDKVKKVDLLEIDRKALTAGRLFVDDQAHVGAVTQPDGFA*
Ga0068971_14789292	3300004477	Peatlands Soil	SVLEDKVKKLDLLEVDRKALTAGRLFIDDQAHIGAVSQPDGFA*
Ga0068955_13174492	3300004617	Peatlands Soil	ECLAPGTALSVLEDMVKKLDLLEIDRKALTAGRLFIDQQAHLGAVSQPDGFA*
Ga0072320_12976472	3300004970	Peatlands Soil	VLEDKVKKLDLLEIDRNALTAGRLFIDDQAHVGAVSQPDGFA*
Ga0070708_1014138151	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	TECLAPGTALGVLEDKVKNLDLLEIDRKALTAGRLFIDEQAHIGAVSQPDGFA*
Ga0070734_106553142	3300005533	Surface Soil	KKVALLDVNRRALASGRLFVDKEAHVGAVTQPDGFGG*
Ga0070733_104071693	3300005541	Surface Soil	APGTALDVLTDKVKKLDLLEIDRAALSAGRSFVDDQAHIGAVSQPDGFA*
Ga0070732_101735252	3300005542	Surface Soil	LSVLEDKMKKLDLLEIDRNALTAGRLFIDDMAHVGAVSQPDGFA*
Ga0070717_104185391	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	KKIKLLEVDRKALLAGRDYMDHQANIGAVSQPDGFA*
Ga0075019_105435193	3300006086	Watersheds	APGTALSVLEDKVKKLDLLEIDRKALAAGRLFIDEQAHVGAVSQPDGFA*
Ga0075015_1002210093	3300006102	Watersheds	GTALSVLEDKVKKLDLLEIDRKALAAGRLFIDEQAHVGAVSQPDGFA*
Ga0075014_1005863641	3300006174	Watersheds	ALSVLEDKVKKLDLLEIDRKALTAGRLFIDEQAHIGAVSQPDGFA*
Ga0079221_104996491	3300006804	Agricultural Soil	KVKKVQLLEIDRKALTAGRDYIDHQVGAVSQPDGFA*
Ga0105240_126048461	3300009093	Corn Rhizosphere	TAMQVLEAKVKKVQLLEIDRKALAAGRDYIDHQANVGAVSQPDGFA*
Ga0116222_15578092	3300009521	Peatlands Soil	LEDKVKKLDLLEIDRNALTAGRLFIDDQAHVGAVSQPDGFA*
Ga0105237_102856781	3300009545	Corn Rhizosphere	CLNPETAMKVLEAKVKKVQLLEIDRKALAAGRDYIDHQVGAVSQPDGFA*
Ga0116138_12153032	3300009552	Peatland	LEDKVKKLDLLEIDRKALAAGRRFIEEQAHVGAVSQPDGFA*
Ga0116105_10186611	3300009624	Peatland	QDKVKKLDLLEVDRKALTAGRLFIDDQAHIGAVSQPDGFA*
Ga0116105_11163081	3300009624	Peatland	TECLAPGTALSVLEDKVKKLDLLEIDRKALAAGRQFIDEQAHIGAVSQSDGFA*
Ga0116120_10305043	3300009641	Peatland	EDKVKKLDLLEIDRKALAAGRLFIDEQAHIGAVSQPDGFA*
Ga0116120_11409352	3300009641	Peatland	SVLEDKVKKLDLLEIDRKALSAGRLFIDDQAHVGALSQPDGFA*
Ga0116217_104139682	3300009700	Peatlands Soil	ECLAPGTALSVLEDKVKKLDLLEIDRKALAAGRLFIEEQAHIGAVSQSDGFA*
Ga0116131_10252943	3300009760	Peatland	LEDKVKKLDLLEIDRKALTAGRLFIDEQAHIGAVSQPDGFA*
Ga0074046_100006631	3300010339	Bog Forest Soil	LEDKVKKLNLLEIDRKALTAGRLFIDEQAHIGAVSQPDGFA*
Ga0074046_101536941	3300010339	Bog Forest Soil	KKLDLLEIDRKALAAGRLFINEEAHIGAVSQPDGFA*
Ga0136449_1032418992	3300010379	Peatlands Soil	ECLAPGTALSVLEDKVKKLDMLEINRKALAAGRRFIEEQAHVGAVSQPDGFA*
Ga0136806_10227395	3300010386	Sediment	AVATAWSVLQEKVKKLDLLELDRKALNAGRLFVDEHAHIGALDQPDGFA*
Ga0138566_1262351	3300011026	Peatlands Soil	LSVLEDKVKKVDLLEIDRKALTAGRLFVDDQAHVGAVTQPDGFA*
Ga0138582_10208121	3300011062	Peatlands Soil	GTALSVLEDKVKKVDLLEIDRKALTAGRLFVDDQAHVGAVTQPDGFA*
Ga0138595_10215211	3300011071	Peatlands Soil	LEDKVKKLDLLEVDRKALTAGRLFIDDQAHIGAVSQPDGFA*
Ga0138584_11195191	3300011073	Peatlands Soil	KVDLLEIDRKALTAGRLFVDDQAHVGAVTQPDGFA*
Ga0138559_10055031	3300011074	Peatlands Soil	PGTALSVLEDMVKKLDLLEIDRKALTAGRLFIDEQAHLGAVSQPDGFA*
Ga0138560_10712811	3300011083	Peatlands Soil	LAPGTALSVLEDKVKKLNLLEIDRKALTAGRLFIDEQAHIGAVSQPDGFA*
Ga0138562_10575021	3300011084	Peatlands Soil	KVKKVDLLEIDRKALTAGRLFVDDQAHVGAVTQPDGFA*
Ga0138579_10484893	3300011090	Peatlands Soil	LSVLEDKVKKLDLLEVDCKALTAGRLFIDDQAHIGAVSQPDGFA*
Ga0137393_109892181	3300011271	Vadose Zone Soil	ECLAPGTALGVLEDKVKNLDLLEIDRKALTAGRVFIDEQAHIGAVSQPDGFA*
Ga0137366_100206751	3300012354	Vadose Zone Soil	VKKVDLLEIDRKALTAGRDFVEHQLNIGPVSQPDGFA*
Ga0164303_105449912	3300012957	Soil	TAIKVLEIKVKKIKLLEVDRKALLAGRDYMDHQVNIGAVSQPDGFA*
Ga0164303_107310582	3300012957	Soil	LEEKIRDQELLAIDRKALLAGRDFIETELNVGPVSQPDGFA*
Ga0181524_104700361	3300014155	Bog	CLAPGTALSVLEDKVKKLDLLELDRKALSAGRLFIDEQAHVGAVSQPDGFA*
Ga0181530_101470211	3300014159	Bog	TECLAPGTALSVLEDKVKKLDLLEIDRKALAAGRLFIDEQAHIGAVSQPDGFA*
Ga0181530_104072371	3300014159	Bog	TECLAPGTALSVLEDKVKKLDLLEIDRKALAAGRRFIEEQAHVGAVSQPDGFA*
Ga0181529_103672941	3300014161	Bog	KVKKLDLLEVDRKALTAGRLFIDDQAHIGAVSQPDGFA*
Ga0181532_103502722	3300014164	Bog	GTALSVLEDKVKKLDLLEIDRKALAAGRLFIDEQAHIGAVSQPDGFA*
Ga0181535_103618581	3300014199	Bog	EDKVKKVALLEIDRKALTAGRLFIDEQAHIGAVSQPDGFA*
Ga0182016_101434531	3300014493	Bog	NVLEDKVKKLDLLEIDRKALSAGRLFIDDQAHIGALSQPDGFA*
Ga0182024_122354642	3300014501	Permafrost	CLSPRTALSVLEDKVKKLDLLEIDRRALHAGRLFIDEQAHIGAVSQPDGFA*
Ga0181536_101836131	3300014638	Bog	KLDLLEIDRKALAAGRLFIDEQAHIGAVSQPDGFA*
Ga0182027_114350942	3300014839	Fen	VLEDKVKKLDLLEIDRKALTAGRLFIDEQAHIGAVSQPDGFA*
Ga0187802_100314451	3300017822	Freshwater Sediment	TECLASGTALSVLEDKVKKLDLLEIDRNALTAGRLFIDDQAHVGAVSQPDGFA
Ga0187802_101007831	3300017822	Freshwater Sediment	CLAPGTALSVLEDKVKKLDLLEIDRKALAAGRLFIDEQAHIGAVSQPDGFA
Ga0187803_103575051	3300017934	Freshwater Sediment	SVLEDKVKKVSLLEIDRKALTAGRLFIDEQAHIGAVSQPDGFA
Ga0187821_100562481	3300017936	Freshwater Sediment	LAPGTALGVLEDKVKKLDLLEIDRKALNAGRLFIDDQAHIGAVSQPDGFAY
Ga0187817_101382512	3300017955	Freshwater Sediment	LASGTAMSVLEDKVKRVALLEVDRKALAAGRQFIDHEAHVGAVTQPDGFAE
Ga0187778_101629571	3300017961	Tropical Peatland	DKVKRVALLEVDRKAQTAGRQFIDHEAHIGAVTQPDGFGE
Ga0187778_101820093	3300017961	Tropical Peatland	NVIEDKVKKIALLEIDRQALTAGRLFIDHEAHIGAMSQPDGFAE
Ga0187783_105777982	3300017970	Tropical Peatland	AMDVIEDKVKRVALLEIDRKALAAGRQFIDHEAHIGAVTQPDGFAE
Ga0187782_114715391	3300017975	Tropical Peatland	KNPALLEVDLKAIRAGCDAVDHQGNLGAVSQPDGFA
Ga0187816_100589511	3300017995	Freshwater Sediment	KVKKLDLLEIDRQALTAGRLFIDDQAHIGAVSQPDGFA
Ga0187816_100851852	3300017995	Freshwater Sediment	LSVLEDKVKKLDLLEIDRKALAAGRLFIDEQAHIGAVSQPDGFA
Ga0187816_102276103	3300017995	Freshwater Sediment	ALSVLEDKVKKLNLLEIDRKALTAGRLFIDEQAHIGAVSQPDGFA
Ga0187870_12286501	3300017998	Peatland	LEDKVKKLDLLEIDRKALAAGRLFIDDQAHVGAVNQPDGFA
Ga0187815_103836181	3300018001	Freshwater Sediment	ETALAVLQTKIKKADLLELDREALMAGRNFIDNQIRVGAVSQPDGFAY
Ga0187878_10182341	3300018005	Peatland	KKLDLLEIDRKALAAGRLFIDEQAHIGAVSQPDGFA
Ga0187878_12007251	3300018005	Peatland	TECLAPGTALSVLEDKVKKLDLLEIDRKALAAGRLFIDEQAHIGAVSQPDGFA
Ga0187884_104111081	3300018009	Peatland	SVLEDKVKKLDLLEIDRKALTAGRLFIDEQAHIGAVNQPDGFA
Ga0187873_12193602	3300018013	Peatland	EDKVKKLNLLEIDRKALTAGRLFIDEQAHIGAVSQPDGFA
Ga0187872_101400572	3300018017	Peatland	LAPGTALSVLEDKVKKLDLLEIDRKALTAGRLFIDEQAHIGAVSQPDGFA
Ga0187886_13189262	3300018018	Peatland	SVLEDKVKKLDLLEIDRKALAAGRRFIEEQAHVGAVSQPDGFA
Ga0187885_100136201	3300018025	Peatland	ETECLAAGTALSVLEDKVKKLDLLELDRKALSAGRLFIDDQAHAGAVSQPDGFA
Ga0187857_100197445	3300018026	Peatland	LSVLEDKVKKLDLLEIDRKALTAGRLFIDEQAHIGAVSQPDGFA
Ga0187869_103594762	3300018030	Peatland	ALSVLEDKVKKLDLLEIDRKALSAGRLFIDDQAHVGALSQPDGFA
Ga0187863_104537773	3300018034	Peatland	TALSVLEDKVKKLDLLEIDRRALHAGRLFIDEQAHIGAVSQPDGFA
Ga0187855_100115161	3300018038	Peatland	ECLAPGTALSVLEDKVKKLDLLEIDRKALAAGRLFIDEQAHIGAVSQPDGFA
Ga0187862_107156491	3300018040	Peatland	TECLAPGTALSVLEDKVKKLDLLEIDRKALAAGRRFIEEQAHVGAVSQPDGFA
Ga0187772_111830792	3300018085	Tropical Peatland	AMKVIEDKVKRVALLEVNRKSLVAGRQFIDHEAHLAAMSQPDGFAG
Ga0187772_113699822	3300018085	Tropical Peatland	GTALSVIEDKVTKLALLDIDRKALAAGRQYIDHEAHIGALSQPDGFAE
Ga0187769_101820243	3300018086	Tropical Peatland	VIEDKVKKVALLEVNRNALGAGRQFIDHEAHVGAVSQPDGFAE
Ga0187770_101299993	3300018090	Tropical Peatland	ALSVIEDKVKKLALLEIDRKALVAGRQFIDHEAHIGALSQPDGFAE
Ga0187797_10720701	3300019284	Peatland	SSAMEVLETKVKKVSMLEVNRKALAAGRQYIDHEAHIGAVSQPDGCGE
Ga0187797_14061731	3300019284	Peatland	SAMEVLETKVKKVSMLEVNRKALAAGRQYIDHEAHIGAVSQPDGCGE
Ga0182022_10838341	3300019785	Fen	ALSVLLEDKVKKLDLLEIDRKALTAGRLFIDEQAHIGAVSQPDGFA
Ga0182031_12744575	3300019787	Bog	EDKVKKLDLLEIDRKALTAGRLFIDEQAHIGAVNQPDGFA
Ga0210406_100001813	3300021168	Soil	MMGALLGETECMAPKTALIVLEDKVKKLDLLEIDRNALTARRLFMDDQAHVGAVSQPDGF
Ga0210400_112474741	3300021170	Soil	MMGALLGETECMAPKTALIVLEDKVKKLDLLEIDRNALTAGRLFMDDQAHVGAVSQPDGF
Ga0210405_112728961	3300021171	Soil	LLGETECMAPKTALIVLEDKVKKLDLLEIDRNALTARRLFMDDQAHVGAVSQPDGFA
Ga0210408_107103602	3300021178	Soil	VLEDKVKKLDLLDIDRQALTAGRLFIDDQAHIGAVSQPDGFA
Ga0210391_104158263	3300021433	Soil	ASGTALSVLQDKVRKLDLLEIDRQALTVGRLFIDDQTHVGAVSQPDGCA
Ga0208194_10012451	3300025412	Peatland	LEDKVKKLDLLELDRKALSAGRLFIDDQAHAGAVSQPDGFA
Ga0208188_10935352	3300025507	Peatland	EDTECLAPGTALSVLEDKVKKVDMLEIDRKALAAGRRFIEEQAHVGAVSQPDGFA
Ga0208820_10196491	3300025576	Peatland	TALSVLEDKVKKLNLLEIDRKALTAGRLFIDEQAHIGAVSQPDGFA
Ga0207692_109796042	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	KVKKIKLLEVDRKALLAGRDYMDHQVNIGAVSQPDGFA
Ga0207639_110135992	3300026041	Corn Rhizosphere	TECLNSETAMQVLEAKVKKVQLLEIDRKALTAGRDYIDHQVGAVSQPDGFA
Ga0209113_10416642	3300027517	Forest Soil	MGVIEDKVKKVELLETNRRALAAGRHFIDEHAHEEALSQPD
Ga0209446_11943082	3300027698	Bog Forest Soil	TALRVLEDKVKKLDLLEIDRRALTAGRLFIDDQAHVGAVSQPDGFA
Ga0209656_102628301	3300027812	Bog Forest Soil	DKVKKLDLLEIDRKALSAGRLFIDDQAHVGAVSQSDGFA
Ga0209040_102865142	3300027824	Bog Forest Soil	SVLEDKVKKLDLLEIDRKALAAGRLFIDDQAHVGAVSQPDGFA
Ga0209415_105260902	3300027905	Peatlands Soil	ECLAPGTALSVLEDKVKKLDLLEIDRKALTAGRLFIDEQAHIGAVSQPDGFA
Ga0209415_105558533	3300027905	Peatlands Soil	DKVKKLDLLEIDRNALTAGRLFIDDQAHVGAVSQPDGFA
Ga0209415_110160491	3300027905	Peatlands Soil	VKKLDLLEIDRKALSAGRLFIDDQAHIGAVSQPDGFA
Ga0209583_101319012	3300027910	Watersheds	MSVIEDKVKKVALLEIDRKALAAGRVFIDHEAHIGAVTQPDGFAG
Ga0255358_10260982	3300028069	Soil	PGTALSVLEDKVKKVSLLEIDRKALNAGRLFIDEQAHIGAVSQPDGFA
Ga0302197_100246011	3300028873	Bog	KKLDLLDIDRKALHAGRLFIDGQAHIGAVSQPDGFA
Ga0311358_103345543	3300029915	Bog	KLDLLEIDRRALHAGRLFIDEQAHIGAVSQPDGFA
Ga0311333_120404232	3300030114	Fen	TECLSPVTAMSVLEDKVKKLNLLEIDRKAFAEGRQFVDHLAHVGAVTQSDGFAG
Ga0310037_102915352	3300030494	Peatlands Soil	SVLEDKVKKLDLLEIDRNALTAGRLFIDDQAHVGAVSQPDGFA
Ga0302192_104297101	3300030507	Bog	LNVLEDKVKKLDLLEIDRKALHAGRLFIDEQAHIGAVSQPDGFA
Ga0265765_10193531	3300030879	Soil	ETECLAPGTAFRVLEDKVKKLDLLEIDRQALTAGRLFIDDQAHVGAVSQPDGFA
Ga0307373_106771451	3300031672	Soil	CLAAGTAWSVLQDKVKKLDLLELDRKALNAGRLFVDEHAHIGALDQPDGFA
Ga0307479_119821852	3300031962	Hardwood Forest Soil	LASRTALSVLEDKVKKLDLLEIDRNALTAGRLFIDDMAHVGAVSQPDGFA
Ga0307472_1014197861	3300032205	Hardwood Forest Soil	SPGTAIGVLEDKVKKLDLLEIDRKALTAGRLFIDDQAHIGAVSQPDGFA
Ga0335078_119265491	3300032805	Soil	AMSVIEDKVKKVALLEVNRNALVAGRQFIDHEAHIGAVSQPDGFAE
Ga0335074_114661882	3300032895	Soil	QWLAPDTAQTVLEDKVKKLELLELDRKALNAGRDFNEHHVNVGAISQPDGFA
Ga0335084_104483573	3300033004	Soil	TAERVLEVKVKKANLLEIDRRALVEGKKFVEHEMHIGAVTQPDGFA
Ga0314866_020231_3_116	3300033807	Peatland	KKVALLEVNRNALVAGRQFIDHEAHIGAVSQPDGFAE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F079056

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences