Metagenome / Metatranscriptome Family F079052

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F079052
Family Type	Metagenome / Metatranscriptome
Number of Sequences	116
Average Sequence Length	49 residues
Representative Sequence	MTARLDAAAGDPQQTIAELQRQLDECRAELAARNSEFGERIEHQSA
Number of Associated Samples	92
Number of Associated Scaffolds	116

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	46.73 %
% of genes near scaffold ends (potentially truncated)	90.52 %
% of genes from short scaffolds (< 2000 bps)	84.48 %
Associated GOLD sequencing projects	87
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.53

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (61.207 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (37.069 % of family members)
Environment Ontology (ENVO)	Unclassified (48.276 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (52.586 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 54.05% β-sheet: 0.00% Coil/Unstructured: 45.95%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.53
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.53
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 116 Family Scaffolds
PF02604	PhdYeFM_antitox	6.03
PF00496	SBP_bac_5	5.17
PF00441	Acyl-CoA_dh_1	2.59
PF13772	AIG2_2	2.59
PF13701	DDE_Tnp_1_4	1.72
PF08808	RES	0.86
PF07927	HicA_toxin	0.86
PF09594	GT87	0.86
PF14534	DUF4440	0.86
PF13751	DDE_Tnp_1_6	0.86
PF01381	HTH_3	0.86
PF00313	CSD	0.86
PF01850	PIN	0.86
PF02195	ParBc	0.86
PF12146	Hydrolase_4	0.86
PF14559	TPR_19	0.86
PF02771	Acyl-CoA_dh_N	0.86
PF15919	HicB_lk_antitox	0.86
PF13592	HTH_33	0.86
PF02770	Acyl-CoA_dh_M	0.86
PF13432	TPR_16	0.86
PF13561	adh_short_C2	0.86
PF04392	ABC_sub_bind	0.86

COG ID	Name	Functional Category	% Frequency in 116 Family Scaffolds
COG2161	Antitoxin component YafN of the YafNO toxin-antitoxin module, PHD/YefM family	Defense mechanisms [V]	6.03
COG4118	Antitoxin component of toxin-antitoxin stability system, DNA-binding transcriptional repressor	Defense mechanisms [V]	6.03
COG1960	Acyl-CoA dehydrogenase related to the alkylation response protein AidB	Lipid transport and metabolism [I]	4.31
COG1724	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	General function prediction only [R]	0.86
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	0.86
COG5654	Predicted toxin component of a toxin-antitoxin system, contains RES domain	Defense mechanisms [V]	0.86

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.21 %
All Organisms	root	All Organisms	38.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.21 %
cellular organisms	root	All Organisms → cellular organisms	38.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.21 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	37.93 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.21 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	31.90 %
Apusozoa	clade	All Organisms → cellular organisms → Eukaryota → Apusozoa	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.21 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	26.72 %
Apusomonadidae	family	All Organisms → cellular organisms → Eukaryota → Apusozoa → Apusomonadidae	0.86 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.21 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	12.93 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	6.03 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1.72 %
Thecamonas	genus	All Organisms → cellular organisms → Eukaryota → Apusozoa → Apusomonadidae → Thecamonas	0.86 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.21 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	12.93 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	3.45 %
unclassified Rhodospirillales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales	0.86 %
Thecamonas trahens	species	All Organisms → cellular organisms → Eukaryota → Apusozoa → Apusomonadidae → Thecamonas → Thecamonas trahens	0.86 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.86 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.21 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	12.93 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2.59 %
Rhodospirillales bacterium 20-64-7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium 20-64-7	0.86 %
Thecamonas trahens ATCC 50062	strain	All Organisms → cellular organisms → Eukaryota → Apusozoa → Apusomonadidae → Thecamonas → Thecamonas trahens → Thecamonas trahens ATCC 50062	0.86 %
unclassified Burkholderiaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → unclassified Burkholderiaceae	0.86 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.21 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	12.93 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	2.59 %
Burkholderiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → unclassified Burkholderiaceae → Burkholderiaceae bacterium	0.86 %
Rhodospirillales bacterium 20-64-7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium 20-64-7	0.86 %
Thecamonas trahens ATCC 50062	strain	All Organisms → cellular organisms → Eukaryota → Apusozoa → Apusomonadidae → Thecamonas → Thecamonas trahens → Thecamonas trahens ATCC 50062	0.86 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.21 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	12.93 %
Bradyrhizobium sp. dw_411	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. dw_411	0.86 %
Bradyrhizobium sp. URHA0002	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. URHA0002	0.86 %
Bradyrhizobium sp. Cp5.3	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Cp5.3	0.86 %
Burkholderiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → unclassified Burkholderiaceae → Burkholderiaceae bacterium	0.86 %
Rhodospirillales bacterium 20-64-7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium 20-64-7	0.86 %
Thecamonas trahens ATCC 50062	strain	All Organisms → cellular organisms → Eukaryota → Apusozoa → Apusomonadidae → Thecamonas → Thecamonas trahens → Thecamonas trahens ATCC 50062	0.86 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.86 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2065487018\|GPINP_F5MS3JC02HPMTT	Not Available	503	Open in IMG/M
3300004152\|Ga0062386_100680130	Not Available	844	Open in IMG/M
3300004152\|Ga0062386_100931025	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	719	Open in IMG/M
3300005332\|Ga0066388_101462982	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1192	Open in IMG/M
3300005471\|Ga0070698_101231749	Not Available	698	Open in IMG/M
3300005764\|Ga0066903_104159951	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	775	Open in IMG/M
3300005764\|Ga0066903_108124475	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	537	Open in IMG/M
3300006174\|Ga0075014_100689241	Not Available	593	Open in IMG/M
3300006604\|Ga0074060_11686617	Not Available	550	Open in IMG/M
3300006794\|Ga0066658_10064353	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1621	Open in IMG/M
3300007255\|Ga0099791_10354066	Not Available	704	Open in IMG/M
3300007255\|Ga0099791_10412486	Not Available	651	Open in IMG/M
3300009792\|Ga0126374_11322043	Not Available	583	Open in IMG/M
3300010343\|Ga0074044_10703166	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. dw_411	660	Open in IMG/M
3300010358\|Ga0126370_12469653	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Cp5.3	517	Open in IMG/M
3300010360\|Ga0126372_12567510	Not Available	561	Open in IMG/M
3300010376\|Ga0126381_103006974	Not Available	670	Open in IMG/M
3300010376\|Ga0126381_104220565	Not Available	557	Open in IMG/M
3300012189\|Ga0137388_11111247	Not Available	727	Open in IMG/M
3300012357\|Ga0137384_11330461	Not Available	566	Open in IMG/M
3300012362\|Ga0137361_11117872	Not Available	709	Open in IMG/M
3300012363\|Ga0137390_11651140	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. URHA0002	577	Open in IMG/M
3300012923\|Ga0137359_10936621	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	745	Open in IMG/M
3300012986\|Ga0164304_10196066	All Organisms → cellular organisms → Bacteria → Proteobacteria	1315	Open in IMG/M
3300014052\|Ga0120109_1142373	Not Available	561	Open in IMG/M
3300014501\|Ga0182024_11849594	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	673	Open in IMG/M
3300015264\|Ga0137403_11151141	Not Available	622	Open in IMG/M
3300016270\|Ga0182036_10338422	Not Available	1156	Open in IMG/M
3300016270\|Ga0182036_10668632	Not Available	838	Open in IMG/M
3300016341\|Ga0182035_10339633	Not Available	1244	Open in IMG/M
3300016341\|Ga0182035_11208483	Not Available	675	Open in IMG/M
3300016341\|Ga0182035_11408108	Not Available	626	Open in IMG/M
3300016341\|Ga0182035_11411151	Not Available	625	Open in IMG/M
3300016357\|Ga0182032_10533052	Not Available	969	Open in IMG/M
3300016387\|Ga0182040_11114028	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	662	Open in IMG/M
3300016387\|Ga0182040_11486140	Not Available	575	Open in IMG/M
3300016404\|Ga0182037_10979363	Not Available	736	Open in IMG/M
3300016422\|Ga0182039_11193272	Not Available	687	Open in IMG/M
3300016445\|Ga0182038_10337771	All Organisms → cellular organisms → Bacteria	1244	Open in IMG/M
3300016445\|Ga0182038_11277308	Not Available	656	Open in IMG/M
3300020579\|Ga0210407_11473368	Not Available	503	Open in IMG/M
3300020581\|Ga0210399_10527508	All Organisms → cellular organisms → Bacteria	980	Open in IMG/M
3300020581\|Ga0210399_10778281	Not Available	783	Open in IMG/M
3300021088\|Ga0210404_10180410	Not Available	1123	Open in IMG/M
3300021168\|Ga0210406_11128236	Not Available	575	Open in IMG/M
3300021358\|Ga0213873_10320323	Not Available	504	Open in IMG/M
3300021405\|Ga0210387_10994780	Not Available	735	Open in IMG/M
3300021406\|Ga0210386_11331208	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	604	Open in IMG/M
3300021420\|Ga0210394_11642162	Not Available	540	Open in IMG/M
3300021432\|Ga0210384_10941651	Not Available	765	Open in IMG/M
3300021432\|Ga0210384_10984382	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	745	Open in IMG/M
3300021476\|Ga0187846_10043082	All Organisms → cellular organisms → Bacteria → Proteobacteria	2013	Open in IMG/M
3300021476\|Ga0187846_10213483	Not Available	807	Open in IMG/M
3300021478\|Ga0210402_10231749	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1703	Open in IMG/M
3300021479\|Ga0210410_11747473	Not Available	516	Open in IMG/M
3300021560\|Ga0126371_12226832	Not Available	661	Open in IMG/M
3300021560\|Ga0126371_13422898	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	536	Open in IMG/M
3300026041\|Ga0207639_11778601	Not Available	577	Open in IMG/M
3300027867\|Ga0209167_10116144	Not Available	1382	Open in IMG/M
3300027903\|Ga0209488_10646131	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	763	Open in IMG/M
3300031474\|Ga0170818_110694186	Not Available	827	Open in IMG/M
3300031544\|Ga0318534_10244535	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1035	Open in IMG/M
3300031545\|Ga0318541_10360154	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	812	Open in IMG/M
3300031549\|Ga0318571_10225987	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → unclassified Burkholderiaceae → Burkholderiaceae bacterium	679	Open in IMG/M
3300031640\|Ga0318555_10416626	Not Available	728	Open in IMG/M
3300031708\|Ga0310686_114461039	All Organisms → cellular organisms → Bacteria	587	Open in IMG/M
3300031744\|Ga0306918_10921655	Not Available	680	Open in IMG/M
3300031748\|Ga0318492_10453401	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	678	Open in IMG/M
3300031751\|Ga0318494_10038951	All Organisms → cellular organisms → Bacteria → Proteobacteria	2472	Open in IMG/M
3300031753\|Ga0307477_10680467	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	689	Open in IMG/M
3300031753\|Ga0307477_10724349	Not Available	664	Open in IMG/M
3300031764\|Ga0318535_10119392	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1164	Open in IMG/M
3300031765\|Ga0318554_10380626	Not Available	801	Open in IMG/M
3300031770\|Ga0318521_10367594	All Organisms → cellular organisms → Bacteria	854	Open in IMG/M
3300031771\|Ga0318546_10891722	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium 20-64-7	626	Open in IMG/M
3300031781\|Ga0318547_10050599	Not Available	2235	Open in IMG/M
3300031781\|Ga0318547_10767029	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	600	Open in IMG/M
3300031782\|Ga0318552_10498421	Not Available	622	Open in IMG/M
3300031796\|Ga0318576_10298934	Not Available	760	Open in IMG/M
3300031805\|Ga0318497_10811785	Not Available	525	Open in IMG/M
3300031832\|Ga0318499_10142703	All Organisms → cellular organisms → Eukaryota → Apusozoa → Apusomonadidae → Thecamonas → Thecamonas trahens → Thecamonas trahens ATCC 50062	933	Open in IMG/M
3300031833\|Ga0310917_10484999	Not Available	841	Open in IMG/M
3300031833\|Ga0310917_10746786	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	662	Open in IMG/M
3300031835\|Ga0318517_10033056	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	2089	Open in IMG/M
3300031859\|Ga0318527_10193677	Not Available	859	Open in IMG/M
3300031890\|Ga0306925_11196669	Not Available	762	Open in IMG/M
3300031897\|Ga0318520_10724255	Not Available	622	Open in IMG/M
3300031910\|Ga0306923_10173530	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2462	Open in IMG/M
3300031910\|Ga0306923_12514559	Not Available	507	Open in IMG/M
3300031912\|Ga0306921_10528187	All Organisms → cellular organisms → Bacteria	1370	Open in IMG/M
3300031912\|Ga0306921_11776916	All Organisms → cellular organisms → Bacteria	664	Open in IMG/M
3300031942\|Ga0310916_10120100	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2136	Open in IMG/M
3300031954\|Ga0306926_10111940	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3357	Open in IMG/M
3300031954\|Ga0306926_10122048	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3213	Open in IMG/M
3300032042\|Ga0318545_10224419	Not Available	674	Open in IMG/M
3300032044\|Ga0318558_10129535	All Organisms → cellular organisms → Bacteria → Proteobacteria	1202	Open in IMG/M
3300032052\|Ga0318506_10260315	Not Available	769	Open in IMG/M
3300032055\|Ga0318575_10032112	All Organisms → cellular organisms → Bacteria → Proteobacteria	2308	Open in IMG/M
3300032059\|Ga0318533_10971028	Not Available	623	Open in IMG/M
3300032060\|Ga0318505_10128532	Not Available	1165	Open in IMG/M
3300032064\|Ga0318510_10328377	Not Available	641	Open in IMG/M
3300032076\|Ga0306924_12615150	Not Available	503	Open in IMG/M
3300032174\|Ga0307470_10798951	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	731	Open in IMG/M
3300032261\|Ga0306920_100490698	Not Available	1823	Open in IMG/M
3300032261\|Ga0306920_100659031	All Organisms → cellular organisms → Bacteria	1545	Open in IMG/M
3300032261\|Ga0306920_101603746	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	925	Open in IMG/M
3300032515\|Ga0348332_13467632	Not Available	545	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	95.69%
Host-Associated	Host-Associated	4.31%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	93.10%
Plants	Host-Associated → Plants	4.31%
Aquatic	Environmental → Aquatic	2.59%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	90.52%
Rhizosphere	Host-Associated → Plants → Rhizosphere	2.59%
Freshwater	Environmental → Aquatic → Freshwater	1.72%
Cave	Environmental → Terrestrial → Cave	1.72%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.72%
Sediment	Environmental → Aquatic → Sediment	0.86%
Plant Litter	Environmental → Terrestrial → Plant Litter	0.86%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	84.48%
Loam	Environmental → Terrestrial → Soil → Loam	4.31%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	2.59%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	1.72%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.72%
Unclassified	Environmental → Terrestrial → Cave → Unclassified	1.72%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.72%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.86%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	0.86%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	62.07%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	18.10%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	2.59%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	2.59%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	2.59%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	1.72%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.72%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.72%
Unclassified	Environmental → Terrestrial → Cave → Unclassified → Unclassified	1.72%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.72%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.86%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.86%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.86%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	0.86%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	37.07%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	21.55%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	8.62%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	6.03%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	2.59%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.59%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	2.59%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	1.72%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.72%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.72%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.72%
Biofilm	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Biofilm	1.72%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.72%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.86%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.86%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.86%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.86%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	0.86%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	0.86%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	0.86%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.86%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.86%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.86%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2065487018	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006174	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2014	Environmental	Open in IMG/M
3300006604	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLMB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006794	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010343	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300013503	Permafrost microbial communities from Nunavut, Canada - A23_5cm_12M	Environmental	Open in IMG/M
3300014052	Permafrost microbial communities from Nunavut, Canada - A23_35cm_12M	Environmental	Open in IMG/M
3300014058	Permafrost microbial communities from Nunavut, Canada - A3_65cm_0.25M	Environmental	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021358	Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3	Host-Associated	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021476	Biofilm microbial communities from the roof of an iron ore cave, State of Minas Gerais, Brazil - TC_06 Biofilm (v2)	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025961	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026041	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026142	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027867	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031549	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f24	Environmental	Open in IMG/M
3300031640	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031748	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22	Environmental	Open in IMG/M
3300031751	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031764	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f27	Environmental	Open in IMG/M
3300031765	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031782	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f20	Environmental	Open in IMG/M
3300031796	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24	Environmental	Open in IMG/M
3300031805	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23	Environmental	Open in IMG/M
3300031832	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f25	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031835	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f21	Environmental	Open in IMG/M
3300031859	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f25	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032042	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f26	Environmental	Open in IMG/M
3300032044	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f20	Environmental	Open in IMG/M
3300032052	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f19	Environmental	Open in IMG/M
3300032055	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f23	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032060	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f18	Environmental	Open in IMG/M
3300032064	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f17	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300032515	FICUS49499 Metatranscriptome Czech Republic combined assembly (additional data)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
GPINP_00819030	2065487018	Soil	MTAAIEAAPADPQRTIAELRRQLDECRAELAARNSAYSERIEHQAATV
Ga0062386_1006801301	3300004152	Bog Forest Soil	MTATLDNAVADLQRDNAELRQQLDECRGELAARNSEFGERI
Ga0062386_1009310252	3300004152	Bog Forest Soil	MTATLDAAAGNPQRTIAELQRQLDACRAELAARNSEYGERIEHQS
Ga0066388_1014629821	3300005332	Tropical Forest Soil	MTATLDPAAGDPQQTIAELQRQLDACRSELAARNSEFGERIEHQS
Ga0070711_1012513511	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MTSTPENEAIDPQLTIAELQRRLDEARAELATRNSAYSERIA
Ga0070698_1012317491	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MTATLDTAAGDPQRTIAELQRQLDECRTELAARNSEFGERIEH
Ga0066903_1041599511	3300005764	Tropical Forest Soil	MSAMPERTLADSERIIADIQRQLDECRAELAARNSEYGERIRHQSATVDVLKA
Ga0066903_1081244752	3300005764	Tropical Forest Soil	MSATPERRLADTERLIADLRRQLDECRAELAARNSEYGERIEHQAATV
Ga0075014_1006892411	3300006174	Watersheds	MSATFDEAAADPQQTIAELRRQLDACRAELAARNSEY
Ga0074060_116866172	3300006604	Soil	MTATVDAAAGDPQQTIAELQRQLDACRAVLAARNSE
Ga0066658_100643531	3300006794	Soil	VTATLDEAAADPQGTIAELRRQLDECRAELAARNSAYSERI
Ga0075428_1007036901	3300006844	Populus Rhizosphere	MTGTTDNAALDPQQIIAELQRKLDEARAELAARNDAYSERIAYQAAA
Ga0099791_103540662	3300007255	Vadose Zone Soil	MTATVENAVADLQRANAELQRQLDECRAELAARNSEYGERIEQHSATIDVLKVMSA
Ga0099791_104124862	3300007255	Vadose Zone Soil	MTATLDSAAADLQRANAELQRQLDECRSELAKRNSEYGERIEQQSATIDVLKVMSAS
Ga0126374_113220431	3300009792	Tropical Forest Soil	MTARLDTAAGDPQQTIAELQRQLDQCRTVLAARNSEFGERIEHQSATIDVLKAM
Ga0074044_107031662	3300010343	Bog Forest Soil	MTAKRDGQLADLRRANSELQRQLDACRAELALRNSEYGERIE
Ga0126370_124696531	3300010358	Tropical Forest Soil	MTARLDTAAGDPQQTIAELQHQLDECRSELAARNSEFGERIEHQSATIDVLNAMSASPGDAQPVFDLI
Ga0126372_125675101	3300010360	Tropical Forest Soil	MTATLDAAAGDPQQTIAELQRQLDECRAELPTRNGDLEESLEYQTATR
Ga0126381_1030069741	3300010376	Tropical Forest Soil	MTARLDAAAGDPQQTIVELQRQLDECRTKLAARDSEF
Ga0126381_1042205651	3300010376	Tropical Forest Soil	MTATLDPAAGDPQQTIAEFQHQLDECRSELAARNS
Ga0137388_111112471	3300012189	Vadose Zone Soil	MTATLDNAAAGLQRANAELQRQLDECRSELAARNSEYGERI
Ga0137384_113304611	3300012357	Vadose Zone Soil	MARGNEQMTQMLDDTVAELRRANAELQQKLDQRTAELARRNSEYGERIEHQSATTDVLK
Ga0137361_111178722	3300012362	Vadose Zone Soil	MTATLDNATTDLQRANAELQRQLDECRAELAARNS
Ga0137390_109251612	3300012363	Vadose Zone Soil	MSATFDEAAVDPQRTIAELRRQLDACRAELAARNNEYGERIEHQSATIDVLKAMSASPGDPHPVFDLIVKRTRSVQHNDRCLVRIRW*
Ga0137390_116511401	3300012363	Vadose Zone Soil	MTATLDAAAADPQRTIAELKRQLDACRAELAARNSEYGERIEQQSATIDVLRVMSASPADPQPVFD
Ga0137359_109366211	3300012923	Vadose Zone Soil	MTATLDNATTDLQRANAELQRQLDECRAELAARNSEYGERIEHQSATIDVLK
Ga0164304_101960661	3300012986	Soil	MTATPDNATLDPQQTIAELRRKLDESRAELAARNSAYSER
Ga0120127_100020914	3300013503	Permafrost	MTATPDNAAPAPQQIIAELQRKLDESRAELAARNSAYSERIAYQAAAN
Ga0120109_11423731	3300014052	Permafrost	MTATVDNAVADLQRANAELQRQLDECRAELAARNRAYGERIEQQFAIIDVL
Ga0120149_11134091	3300014058	Permafrost	MTATPDNAALDPQQIIAELQRKLDESRTELTARNSAYSERIAYQA
Ga0182024_118495941	3300014501	Permafrost	MTAMPGGRVAALERENAELRRQLDARAADPDARSGEYGERIAHQTATIDVLKAMSASP
Ga0137403_111511412	3300015264	Vadose Zone Soil	MSATFDEAAVDPQRTIAELQRQLDACRAELAARNSEFGERIEHQSATI
Ga0182036_103384221	3300016270	Soil	MTATLDTAAGDPQRTIAELQRQLDECRTKLAARDSEFGERI
Ga0182036_106686321	3300016270	Soil	MTATLDNAVADLQRDNAELRRQLDACRAELAARNSDFGERIEQQSATTDVLKAMSASPGDPQP
Ga0182035_103396331	3300016341	Soil	MTARPDSAVADLQRDNAELRRQLDDCRTKLAARDSEFGERIDHQSA
Ga0182035_112084831	3300016341	Soil	MTARLDAAAGDPQQTIAELQRQLDECRTELAARNSEFGERIEHQSAT
Ga0182035_114081082	3300016341	Soil	MTATLDNAVADLQRDNAELRRQLDACRAELAARNS
Ga0182035_114111511	3300016341	Soil	MTARLDTAVADLQRDNAELRRQLDACRAELAARNSEFGERIEHQSATIDVLKAM
Ga0182032_105330521	3300016357	Soil	MTARLDAAAGDPQQTIAELQRQLDECRTELAARNSEFGERIEHQSATIDVLRAMSAS
Ga0182040_111140281	3300016387	Soil	MTATLDAAATDPQQTIAELRRQLDACRTELAARNSEFGERIEHQSAT
Ga0182040_114861401	3300016387	Soil	MARRRMTARLDKAAGDPQRTIAELQRQLDECRAKLAARNGDLQESLEY
Ga0182037_109793631	3300016404	Soil	MTATLDTAAGDPQRTIAELQRQLDECRTKLAARDSEFGERIEHQ
Ga0182039_111932721	3300016422	Soil	MARQSRRMTATLDAAARDPQQTIAELQRQLDECRTKLAARDSEFGERI
Ga0182038_103377711	3300016445	Soil	MARQSRRMTATLDAAARDPQQTIAELQRQLDECRTKLAARDSEFGE
Ga0182038_112773081	3300016445	Soil	MTAMLDAAAGDPQRTIAELQRQLDECRTKLAARDSEFGERIEHQSA
Ga0210407_114733681	3300020579	Soil	MSATLDEAAVDPQQTIADLQRQLDACRAELAARNSEFGERIEHQSATIDVLK
Ga0210399_105275081	3300020581	Soil	MSATFDEAAVDPQQTIAELRRQLDACRAELAARNSEFGERIEHQSATIDVLK
Ga0210399_107782812	3300020581	Soil	MTATLDAAAADPQRTIAELQRQLDACRAELAARNSEFGERIEHQSATIDVLKAMS
Ga0210404_101804103	3300021088	Soil	MSATLDEAAVDPQQTIADLQRQLDACRAELAARNSEFGERIEHQS
Ga0210406_111282362	3300021168	Soil	MARRRRHMTATLDSAAADLQRANAELRRQLDECRAELAARNSEFGERIEHQS
Ga0213873_103203231	3300021358	Rhizosphere	MARRRMTARLDTAAADPQQTIAELQRQLDACRTELAARNGDLQESREYQT
Ga0210387_109947802	3300021405	Soil	MSATFDEAAVDPQQTIAELRRQLDACRAELAARNSEFGER
Ga0210386_113312082	3300021406	Soil	MTATLDSAVADLQRDNAELRRQLDACRAELAARNSEYGERIEHQSATIDVLKA
Ga0210394_116421621	3300021420	Soil	MTATLDSAVADLQRDNAELRRQLDACRAELAARNSEYGERDRTSV
Ga0210384_109416512	3300021432	Soil	MTARLDAAAGDPQQTIAELQRQLDECRAELAARNSEFGERIEHQSA
Ga0210384_109843822	3300021432	Soil	MSATLDAAAGDPQQTISELQRQLDACRAELAARNSEYGERIEHQSA
Ga0187846_100430825	3300021476	Biofilm	MTARLDTAVADLQRDNAELRRQLDACRAELAARNSEFG
Ga0187846_102134831	3300021476	Biofilm	MTARLDTAAADLQRDNAELRRQLDACRAELAARNSEFGERIEHQSATIDVLKAMSGSP
Ga0210402_102317493	3300021478	Soil	MTAALDAAAADPHQTIAELRRQLDACRAELAARNSEFGERIDH
Ga0210410_117474731	3300021479	Soil	MTATVDNAVAELRRANAELQQRLDERTAELAARNSEYGERIEQQSATVDVLKV
Ga0126371_122268321	3300021560	Tropical Forest Soil	MTATLDPAAGDPQQTIAELQRQLDEYRTGLAARNSEFGKGIEHQSATIDVLKAMSASPG
Ga0126371_134228982	3300021560	Tropical Forest Soil	MTARLDTAVAGLQRDNAELRRQLDACRSELAARNSEFGERIEHQSATIDVLKAMSASPGDPQPLFDLITGRA
Ga0207712_114737072	3300025961	Switchgrass Rhizosphere	MTATPDNATLDPQQTIAELRRKLDESRAELAARNSAYSERIAYQ
Ga0207639_117786011	3300026041	Corn Rhizosphere	MTATPDNATLDPQQTIAELRRKLDESRAELAARNSA
Ga0207698_111984841	3300026142	Corn Rhizosphere	MTATPDNATLDPQQTIAELRRKLDESRAELAARNSAYSERIAYQA
Ga0209167_101161443	3300027867	Surface Soil	MTATVDNAVADLQRANAELRRELDERTAELAARNG
Ga0209488_106461311	3300027903	Vadose Zone Soil	MTATVDNAVADLQRANAELQRQLDECRAELAARNSEYGERIEQQSATIDVLKVMSASPGDPQS
Ga0170818_1106941863	3300031474	Forest Soil	MSATFDEAAVDPQRTIAELQRQLDACRAELAEHNSEFGDASN
Ga0318534_102445351	3300031544	Soil	MTATLDTAVADLQRDNAELRRQLDACRAELAARNSDFGERIEQQSATIDVLKAMSASPSDPRPVFD
Ga0318541_103601541	3300031545	Soil	MTATLDSAAGDPQQTIAELQRQLDECRSELAGQNSEFRERIEHQSATIDVLR
Ga0318571_102259872	3300031549	Soil	MTATLDTAAADPQQTIAELQRQLDTCRAELAARNSDLQESLEY
Ga0318555_104166262	3300031640	Soil	MTATLDAAAADPQRTIAELQRQLDACRAELAARNSEYGERI
Ga0310686_1144610391	3300031708	Soil	MTAMLDAAAGAPQRTIAELQRQLDACSAELAARNSEFGERIEYQSATIDVLKAMSASPGDPQPVFD
Ga0306918_109216551	3300031744	Soil	MTAMLDAAAGDPQRTIAELQRQLDECRAELAARNSEFGERIEHQSATIDV
Ga0318492_104534011	3300031748	Soil	MTATLDSAVADLQRDNAELRRQLDDCRTKLAARDSEFGERIDHQSATIDVLKAMSASPGDPQPVFDLIVRREREL
Ga0318494_100389514	3300031751	Soil	MTATLDTAAADPQQTIAELQRQLDTCRAELAARNSDLQESLEYQ
Ga0307477_106804671	3300031753	Hardwood Forest Soil	MTATLDSALADLQRDNAELRRQLDACRVELAARNSEYGERIEHQ
Ga0307477_107243491	3300031753	Hardwood Forest Soil	MTATLDSAVADLQRDNAELRRQLDACRAELAARNSEFGERIEHQAATIDVLKAMSASPG
Ga0318535_101193921	3300031764	Soil	MTATLDTAVADLQRDNAELRRQLDACRAELAARNSDFGERIEQQSATIDVLKAMSASPSDPR
Ga0318554_103806261	3300031765	Soil	MTATLDNAVADLQRDNAELRRQLDACRAELAARNSDFGERIEQQSATTDVLKAM
Ga0318521_103675941	3300031770	Soil	MTAVVEAAAADPQQTIAELRRQLGECRAELAARNSEY
Ga0318546_108917221	3300031771	Soil	MTAVVEAAAADPQQTIAELRRQLGECRAELAARNSEYGERIEHQAATVDVL
Ga0318547_100505994	3300031781	Soil	MTATLDTAAGDPQQTIAELQRQLDECRTKLAARDSEFGEAIEHQSATIDVLK
Ga0318547_103854632	3300031781	Soil	MARRRMTAKLDTAAADPQRTIAELQRQLDECRTKLAARESELQARTRDLEESLEYQTATSDVLN
Ga0318547_107670292	3300031781	Soil	MTARLDAPAGDSQQTIAELQRQLDECRAELAAQNGDLQEAVEY
Ga0318552_104984211	3300031782	Soil	MTATLDTAAGDPQRTIAELQRQLDECRTKLAARDSEFGERIEHQSATI
Ga0318576_102989341	3300031796	Soil	MTAMLDAAAGDPQQTIAELQRQLDECRTELAARNSEFGERIEHQSATIDVLRAMSASPSDPQPV
Ga0318497_108117851	3300031805	Soil	MTATLDSAVADLQRDNAELRRQLDDCRTKLAARDSE
Ga0318499_101427031	3300031832	Soil	MTATLDTAAGDPQQTIAELQRQLDECRTKLAARDSEFGEAIEH
Ga0310917_104849993	3300031833	Soil	MTATLDAAATDPQQTIAELRRQLDACRTELAARNSEFGERIEHQSATIDVLE
Ga0310917_107467862	3300031833	Soil	MTAVVEAAAADPQQTIAELRRQLGECRAELAARNSEYGERI
Ga0318517_100330563	3300031835	Soil	MTATLDTAVADLQRDNAELRRQLDACRAELAARNSDFGERIEQ
Ga0318527_101936771	3300031859	Soil	MTATLDNAVADLQRDNAELRRQLDACRAELAARNSDFGERIEQQSATTDVLKAMSASPGDPQ
Ga0306925_111966692	3300031890	Soil	MTATLDAGARDPQRTIAELQRQLDECRTDLAARNSEFGERIEHQSATIAVLKAMS
Ga0318520_107242551	3300031897	Soil	MTATLDAAAADPQRTIAELQRQLDACRAELAARNS
Ga0306923_101735301	3300031910	Soil	MTAMLDAAAGDPQRTIAELQRQLDECRTKLAARDSEFGERIEHQ
Ga0306923_125145591	3300031910	Soil	MTATLDSAAGDPQQTIAELQRQLDECRSELAGQNSE
Ga0306921_105281872	3300031912	Soil	MARRRMTAKLDTAAADPQRTIAELQRQLDECRTKLAARESELQARTR
Ga0306921_117769162	3300031912	Soil	MTARLDAPAGDPQQTIAELQRQLDACRTELAVRNSEFGERIEHQSATIDVLKAMSASPGD
Ga0310916_101201002	3300031942	Soil	MTATLDTAVADLQRDNAELRRQLDACRAELAARNSDFGERI
Ga0310909_115346261	3300031947	Soil	MARRRMTAKLDTAAADPQRTIAELQRQLDECRTKLAARESELQARTRDLEESLEY
Ga0306926_101119404	3300031954	Soil	MTATLDTAAGDPQQTIAELQRQLDECRTKLAARDSEFGERIDHQSATIDVLKAIRSPCST
Ga0306926_101220486	3300031954	Soil	MTAMLDAAAGDPQRTIAELQRQLDECRAELAARDSEF
Ga0318545_102244191	3300032042	Soil	MARQSRRMTATLDAAARDPQQTIAELQRQLDECRTKLAARDSEFGERIDHQSATIDVLKAIRSPCST
Ga0318558_101295352	3300032044	Soil	MTATLDNAVADLQRDNAELRRQLDACRAELAARNSDFGERIEQQSATTDVLKAMSASPGDPQPVFDLIVR
Ga0318506_102603151	3300032052	Soil	MTATLDSAVADLQRDNAELRRQLDDCRTKLAARDSEFGERIDHQSATIDVLKAMSASP
Ga0318575_100321121	3300032055	Soil	MTATLDNAVADLQRDNAELRRQLDACRAELAARNSDFGERIEQQSATTDVLKAMSASPGDPQPVFDLI
Ga0318533_109710281	3300032059	Soil	MARRRMTATLDTAAGDPQRTIAGLQRQLDECRAELAARNGDLQ
Ga0318505_101285321	3300032060	Soil	MTATLDAGARDPQRTIAELQRQLDECRTDLAARNSEFGERIEHQSATIAVLKAMSA
Ga0318510_103283771	3300032064	Soil	MTATLDTAVADLQRDNAELRRQLDACRAELAARNSDF
Ga0306924_126151501	3300032076	Soil	MTATLDSAAGDPQQTIAELQRQLDECRTELAARNSEFGERIEHQSATI
Ga0307470_107989512	3300032174	Hardwood Forest Soil	MTAAIEAALADPQRTIAELRRQLDECRAELAARNSAYSERIEHQAAA
Ga0306920_1004906982	3300032261	Soil	MTARLDAPAGDPQQTIAELQRQLDACRTELAVRNSEFGERIEHQSATI
Ga0306920_1006590311	3300032261	Soil	MTAVVEAAAADPQQTIAELRRQLGECRAELAARNSEYGERIEHQAATVDV
Ga0306920_1016037462	3300032261	Soil	MLEAAGDPQQTIAELQRQLDECRTKLATRDSEFGER
Ga0348332_134676322	3300032515	Plant Litter	MSATFDEAAADPQRTIAELQRQLDKCRAELATRNSEFGERIEHQSATIDVLKAMS

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F079052

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences