Metagenome Family F079048

Basic Information
Family ID	F079048
Family Type	Metagenome
Number of Sequences	116
Average Sequence Length	45 residues
Representative Sequence	MITRHPARTSWSRRDVLRGSAAALMGAYGLAPRYGLAADIPMEYDGS
Number of Associated Samples	103
Number of Associated Scaffolds	116

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	97.41 %
% of genes near scaffold ends (potentially truncated)	99.14 %
% of genes from short scaffolds (< 2000 bps)	90.52 %
Associated GOLD sequencing projects	96
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.30

Most Common Taxonomy
Group	Unclassified (51.724 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (23.276 % of family members)
Environment Ontology (ENVO)	Unclassified (24.138 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (51.724 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 33.33% β-sheet: 0.00% Coil/Unstructured: 66.67%
Feature Viewer

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Pfam ID	Name	% Frequency in 116 Family Scaffolds
PF00296	Bac_luciferase	2.59
PF00903	Glyoxalase	2.59
PF00106	adh_short	1.72
PF00496	SBP_bac_5	1.72
PF14226	DIOX_N	1.72
PF08669	GCV_T_C	1.72
PF04909	Amidohydro_2	1.72
PF00005	ABC_tran	0.86
PF00311	PEPcase	0.86
PF01075	Glyco_transf_9	0.86
PF01053	Cys_Met_Meta_PP	0.86
PF13738	Pyr_redox_3	0.86
PF08352	oligo_HPY	0.86
PF00529	CusB_dom_1	0.86
PF01872	RibD_C	0.86
PF00866	Ring_hydroxyl_B	0.86
PF12903	DUF3830	0.86
PF07690	MFS_1	0.86
PF13193	AMP-binding_C	0.86
PF02668	TauD	0.86
PF00872	Transposase_mut	0.86
PF01722	BolA	0.86
PF13360	PQQ_2	0.86
PF00535	Glycos_transf_2	0.86
PF01588	tRNA_bind	0.86
PF02885	Glycos_trans_3N	0.86
PF03480	DctP	0.86
PF05598	DUF772	0.86
PF00732	GMC_oxred_N	0.86
PF13610	DDE_Tnp_IS240	0.86
PF01979	Amidohydro_1	0.86

COG ID	Name	Functional Category	% Frequency in 116 Family Scaffolds
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	2.59
COG1985	Pyrimidine reductase, riboflavin biosynthesis	Coenzyme transport and metabolism [H]	0.86
COG5517	3-phenylpropionate/cinnamic acid dioxygenase, small subunit	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.86
COG4100	Cystathionine beta-lyase family protein involved in aluminum resistance	Inorganic ion transport and metabolism [P]	0.86
COG3328	Transposase (or an inactivated derivative)	Mobilome: prophages, transposons [X]	0.86
COG2873	O-acetylhomoserine/O-acetylserine sulfhydrylase, pyridoxal phosphate-dependent	Amino acid transport and metabolism [E]	0.86
COG2517	Predicted RNA-binding protein, contains C-terminal EMAP domain	General function prediction only [R]	0.86
COG2352	Phosphoenolpyruvate carboxylase	Energy production and conversion [C]	0.86
COG2303	Choline dehydrogenase or related flavoprotein	Lipid transport and metabolism [I]	0.86
COG2175	Taurine dioxygenase, alpha-ketoglutarate-dependent	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.86
COG2008	Threonine aldolase	Amino acid transport and metabolism [E]	0.86
COG0073	tRNA-binding EMAP/Myf domain	Translation, ribosomal structure and biogenesis [J]	0.86
COG1982	Arginine/lysine/ornithine decarboxylase	Amino acid transport and metabolism [E]	0.86
COG1921	Seryl-tRNA(Sec) selenium transferase	Translation, ribosomal structure and biogenesis [J]	0.86
COG0859	ADP-heptose:LPS heptosyltransferase	Cell wall/membrane/envelope biogenesis [M]	0.86
COG0626	Cystathionine beta-lyase/cystathionine gamma-synthase	Amino acid transport and metabolism [E]	0.86
COG0520	Selenocysteine lyase/Cysteine desulfurase	Amino acid transport and metabolism [E]	0.86
COG0436	Aspartate/methionine/tyrosine aminotransferase	Amino acid transport and metabolism [E]	0.86
COG0399	dTDP-4-amino-4,6-dideoxygalactose transaminase	Cell wall/membrane/envelope biogenesis [M]	0.86
COG0262	Dihydrofolate reductase	Coenzyme transport and metabolism [H]	0.86
COG0156	7-keto-8-aminopelargonate synthetase or related enzyme	Coenzyme transport and metabolism [H]	0.86
COG0075	Archaeal aspartate aminotransferase or a related aminotransferase, includes purine catabolism protein PucG	Amino acid transport and metabolism [E]	0.86

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.72 %
All Organisms	root	All Organisms	48.28 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.72 %
cellular organisms	root	All Organisms → cellular organisms	48.28 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.72 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	48.28 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.72 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	29.31 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.72 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	25.00 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.72 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	8.62 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	6.90 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2.59 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.72 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3.45 %
Alphaproteobacteria bacterium MarineAlpha4_Bin2	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium MarineAlpha4_Bin2	2.59 %
Alphaproteobacteria bacterium MarineAlpha4_Bin1	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium MarineAlpha4_Bin1	2.59 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	2.59 %
unclassified Rhodospirillales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales	1.72 %
Methylobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	0.86 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.72 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3.45 %
Alphaproteobacteria bacterium MarineAlpha4_Bin2	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium MarineAlpha4_Bin2	2.59 %
Alphaproteobacteria bacterium MarineAlpha4_Bin1	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium MarineAlpha4_Bin1	2.59 %
Rhodospirillales bacterium URHD0088	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	1.72 %
Roseicella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Roseicella	0.86 %
Roseomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Roseomonas	0.86 %
Methylobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	0.86 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.72 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3.45 %
Alphaproteobacteria bacterium MarineAlpha4_Bin2	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium MarineAlpha4_Bin2	2.59 %
Alphaproteobacteria bacterium MarineAlpha4_Bin1	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium MarineAlpha4_Bin1	2.59 %
Rhodospirillales bacterium URHD0088	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	1.72 %
Roseicella frigidaeris	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Roseicella → Roseicella frigidaeris	0.86 %
Roseomonas wenyumeiae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Roseomonas → Roseomonas wenyumeiae	0.86 %
Methylobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	0.86 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.86 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001356\|JGI12269J14319_10042191	All Organisms → cellular organisms → Bacteria	2840	Open in IMG/M
3300002245\|JGIcombinedJ26739_101554587	All Organisms → cellular organisms → Bacteria	558	Open in IMG/M
3300004152\|Ga0062386_101046649	All Organisms → cellular organisms → Bacteria → Proteobacteria	677	Open in IMG/M
3300004152\|Ga0062386_101284446	Not Available	609	Open in IMG/M
3300005177\|Ga0066690_10164081	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	1466	Open in IMG/M
3300005184\|Ga0066671_10809126	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	599	Open in IMG/M
3300005332\|Ga0066388_101237449	Not Available	1280	Open in IMG/M
3300005356\|Ga0070674_100531073	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	984	Open in IMG/M
3300005437\|Ga0070710_10087387	Not Available	1832	Open in IMG/M
3300005575\|Ga0066702_10901335	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium MarineAlpha4_Bin1	527	Open in IMG/M
3300005614\|Ga0068856_100789191	All Organisms → cellular organisms → Bacteria	969	Open in IMG/M
3300005764\|Ga0066903_107911754	Not Available	546	Open in IMG/M
3300006028\|Ga0070717_12018952	Not Available	519	Open in IMG/M
3300006174\|Ga0075014_100861710	Not Available	540	Open in IMG/M
3300006175\|Ga0070712_100547507	All Organisms → cellular organisms → Bacteria	975	Open in IMG/M
3300006237\|Ga0097621_100995455	Not Available	784	Open in IMG/M
3300006755\|Ga0079222_11489323	All Organisms → cellular organisms → Bacteria → Proteobacteria	633	Open in IMG/M
3300006755\|Ga0079222_12012326	Not Available	568	Open in IMG/M
3300006794\|Ga0066658_10301222	All Organisms → cellular organisms → Bacteria → Proteobacteria	857	Open in IMG/M
3300006794\|Ga0066658_10679857	Not Available	567	Open in IMG/M
3300006796\|Ga0066665_10929058	Not Available	672	Open in IMG/M
3300006797\|Ga0066659_10694301	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium MarineAlpha4_Bin2	831	Open in IMG/M
3300006800\|Ga0066660_11465416	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium MarineAlpha4_Bin1	536	Open in IMG/M
3300009038\|Ga0099829_10673249	Not Available	860	Open in IMG/M
3300009090\|Ga0099827_11408675	Not Available	607	Open in IMG/M
3300009177\|Ga0105248_10704303	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Roseicella → Roseicella frigidaeris	1139	Open in IMG/M
3300009553\|Ga0105249_13216514	Not Available	525	Open in IMG/M
3300010046\|Ga0126384_11715804	Not Available	594	Open in IMG/M
3300010361\|Ga0126378_12261692	All Organisms → cellular organisms → Bacteria	620	Open in IMG/M
3300010376\|Ga0126381_100826046	Not Available	1331	Open in IMG/M
3300010398\|Ga0126383_13083659	Not Available	544	Open in IMG/M
3300011270\|Ga0137391_10108825	All Organisms → cellular organisms → Bacteria	2403	Open in IMG/M
3300011270\|Ga0137391_10573656	All Organisms → cellular organisms → Bacteria	948	Open in IMG/M
3300012096\|Ga0137389_11457157	Not Available	580	Open in IMG/M
3300012199\|Ga0137383_10445821	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium MarineAlpha4_Bin2	948	Open in IMG/M
3300012212\|Ga0150985_111841237	Not Available	644	Open in IMG/M
3300012924\|Ga0137413_10452266	All Organisms → cellular organisms → Bacteria	935	Open in IMG/M
3300012951\|Ga0164300_10500966	All Organisms → cellular organisms → Bacteria	694	Open in IMG/M
3300012988\|Ga0164306_11932395	Not Available	513	Open in IMG/M
3300013766\|Ga0120181_1051167	Not Available	931	Open in IMG/M
3300014157\|Ga0134078_10188908	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	834	Open in IMG/M
3300014497\|Ga0182008_10207359	Not Available	999	Open in IMG/M
3300014969\|Ga0157376_10329935	All Organisms → cellular organisms → Bacteria	1453	Open in IMG/M
3300015373\|Ga0132257_103341050	Not Available	584	Open in IMG/M
3300016294\|Ga0182041_10548617	Not Available	1009	Open in IMG/M
3300016371\|Ga0182034_10217865	All Organisms → cellular organisms → Bacteria	1486	Open in IMG/M
3300016387\|Ga0182040_10135898	Not Available	1730	Open in IMG/M
3300016422\|Ga0182039_10187323	Not Available	1639	Open in IMG/M
3300017792\|Ga0163161_11925990	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	526	Open in IMG/M
3300018073\|Ga0184624_10484448	Not Available	539	Open in IMG/M
3300018431\|Ga0066655_11126877	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium MarineAlpha4_Bin1	551	Open in IMG/M
3300018433\|Ga0066667_10059820	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	2350	Open in IMG/M
3300018433\|Ga0066667_10186078	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1510	Open in IMG/M
3300018920\|Ga0190273_11877487	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	549	Open in IMG/M
3300020579\|Ga0210407_10929494	Not Available	666	Open in IMG/M
3300020580\|Ga0210403_10608564	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	882	Open in IMG/M
3300020582\|Ga0210395_10168030	Not Available	1641	Open in IMG/M
3300020583\|Ga0210401_11417631	Not Available	552	Open in IMG/M
3300021168\|Ga0210406_11026461	Not Available	612	Open in IMG/M
3300021170\|Ga0210400_10564026	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Roseomonas → Roseomonas wenyumeiae	939	Open in IMG/M
3300021178\|Ga0210408_10571751	Not Available	896	Open in IMG/M
3300021178\|Ga0210408_10965668	Not Available	661	Open in IMG/M
3300021180\|Ga0210396_11243492	All Organisms → cellular organisms → Bacteria	622	Open in IMG/M
3300021406\|Ga0210386_11478884	Not Available	567	Open in IMG/M
3300021478\|Ga0210402_11783740	Not Available	541	Open in IMG/M
3300021479\|Ga0210410_10712387	All Organisms → cellular organisms → Bacteria	886	Open in IMG/M
3300021560\|Ga0126371_10669773	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1186	Open in IMG/M
3300021560\|Ga0126371_13136785	Not Available	559	Open in IMG/M
3300025915\|Ga0207693_10121738	Not Available	2049	Open in IMG/M
3300025915\|Ga0207693_10487520	Not Available	962	Open in IMG/M
3300025922\|Ga0207646_11927826	Not Available	503	Open in IMG/M
3300025929\|Ga0207664_11968916	Not Available	507	Open in IMG/M
3300025942\|Ga0207689_10225212	All Organisms → cellular organisms → Bacteria	1550	Open in IMG/M
3300025960\|Ga0207651_11736791	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	562	Open in IMG/M
3300026308\|Ga0209265_1079772	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium MarineAlpha4_Bin2	934	Open in IMG/M
3300026527\|Ga0209059_1266748	All Organisms → cellular organisms → Bacteria	576	Open in IMG/M
3300026530\|Ga0209807_1113502	Not Available	1137	Open in IMG/M
3300027583\|Ga0209527_1085653	All Organisms → cellular organisms → Bacteria	708	Open in IMG/M
3300027701\|Ga0209447_10194759	Not Available	554	Open in IMG/M
3300027846\|Ga0209180_10020704	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3484	Open in IMG/M
3300027862\|Ga0209701_10634476	Not Available	561	Open in IMG/M
3300027882\|Ga0209590_10632141	Not Available	688	Open in IMG/M
3300028906\|Ga0308309_10797736	All Organisms → cellular organisms → Bacteria	820	Open in IMG/M
3300031128\|Ga0170823_16512762	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	511	Open in IMG/M
3300031231\|Ga0170824_113527354	Not Available	766	Open in IMG/M
3300031474\|Ga0170818_104087123	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	818	Open in IMG/M
3300031474\|Ga0170818_107175907	Not Available	547	Open in IMG/M
3300031573\|Ga0310915_10056211	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2556	Open in IMG/M
3300031680\|Ga0318574_10395481	Not Available	807	Open in IMG/M
3300031681\|Ga0318572_10700877	Not Available	603	Open in IMG/M
3300031744\|Ga0306918_10039350	All Organisms → cellular organisms → Bacteria	3063	Open in IMG/M
3300031744\|Ga0306918_10164266	All Organisms → cellular organisms → Bacteria → Proteobacteria	1650	Open in IMG/M
3300031744\|Ga0306918_10694675	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	796	Open in IMG/M
3300031747\|Ga0318502_10577125	Not Available	676	Open in IMG/M
3300031748\|Ga0318492_10042805	All Organisms → cellular organisms → Bacteria	2088	Open in IMG/M
3300031782\|Ga0318552_10321683	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	787	Open in IMG/M
3300031798\|Ga0318523_10421119	Not Available	663	Open in IMG/M
3300031805\|Ga0318497_10188087	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1139	Open in IMG/M
3300031880\|Ga0318544_10447909	Not Available	503	Open in IMG/M
3300031942\|Ga0310916_10880699	All Organisms → cellular organisms → Bacteria	751	Open in IMG/M
3300031954\|Ga0306926_12883589	Not Available	517	Open in IMG/M
3300031962\|Ga0307479_11517759	Not Available	627	Open in IMG/M
3300031996\|Ga0308176_12407989	All Organisms → cellular organisms → Bacteria	561	Open in IMG/M
3300032001\|Ga0306922_10093636	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	3169	Open in IMG/M
3300032001\|Ga0306922_11507381	Not Available	672	Open in IMG/M
3300032043\|Ga0318556_10248179	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	929	Open in IMG/M
3300032054\|Ga0318570_10357166	Not Available	665	Open in IMG/M
3300032064\|Ga0318510_10073281	All Organisms → cellular organisms → Bacteria	1260	Open in IMG/M
3300032076\|Ga0306924_11595901	Not Available	688	Open in IMG/M
3300032090\|Ga0318518_10045035	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	2078	Open in IMG/M
3300032091\|Ga0318577_10088265	Not Available	1441	Open in IMG/M
3300032174\|Ga0307470_11147502	Not Available	628	Open in IMG/M
3300032261\|Ga0306920_100064622	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	5346	Open in IMG/M
3300032261\|Ga0306920_104226901	Not Available	517	Open in IMG/M
3300033158\|Ga0335077_10978727	Not Available	846	Open in IMG/M
3300033475\|Ga0310811_10479874	Not Available	1314	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	89.66%
Host-Associated	Host-Associated	10.34%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	85.34%
Plants	Host-Associated → Plants	10.34%
Aquatic	Environmental → Aquatic	4.31%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	85.34%
Rhizosphere	Host-Associated → Plants → Rhizosphere	5.17%
Rhizoplane	Host-Associated → Plants → Rhizoplane	4.31%
Freshwater	Environmental → Aquatic → Freshwater	2.59%
Sediment	Environmental → Aquatic → Sediment	1.72%
Roots	Host-Associated → Plants → Roots	0.86%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	74.14%
Loam	Environmental → Terrestrial → Soil → Loam	10.34%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	3.45%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	2.59%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.59%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.72%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.72%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.72%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.86%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.86%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	39.66%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	18.97%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	12.07%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.03%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	4.31%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	3.45%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	2.59%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.59%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.72%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.72%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.72%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.72%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.86%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.86%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.86%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.86%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	23.28%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	11.21%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	9.48%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	8.62%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	5.17%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	5.17%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.45%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	3.45%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	2.59%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.59%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.72%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.72%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.72%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	1.72%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.72%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.86%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.86%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.86%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	0.86%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	0.86%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.86%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.86%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.86%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.86%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.86%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.86%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.86%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.86%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.86%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.86%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.86%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.86%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.86%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.86%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001356	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental	Open in IMG/M
3300005177	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139	Environmental	Open in IMG/M
3300005184	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005575	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151	Environmental	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006174	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2014	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006794	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300013766	Permafrost microbial communities from Nunavut, Canada - A26_65cm_6M	Environmental	Open in IMG/M
3300014157	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300014497	Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG	Host-Associated	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300018073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_b1	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018920	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 IS	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025942	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025960	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026308	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_103 (SPAdes)	Environmental	Open in IMG/M
3300026527	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151 (SPAdes)	Environmental	Open in IMG/M
3300026530	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154 (SPAdes)	Environmental	Open in IMG/M
3300027583	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027701	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027846	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027862	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300031128	Oak Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental	Open in IMG/M
3300031748	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22	Environmental	Open in IMG/M
3300031782	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f20	Environmental	Open in IMG/M
3300031798	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f19	Environmental	Open in IMG/M
3300031805	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23	Environmental	Open in IMG/M
3300031880	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f25	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300031996	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R2	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032043	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f24	Environmental	Open in IMG/M
3300032054	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f23	Environmental	Open in IMG/M
3300032064	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f17	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032090	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f22	Environmental	Open in IMG/M
3300032091	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f25	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033158	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1	Environmental	Open in IMG/M
3300033475	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YC	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12269J14319_100421914	3300001356	Peatlands Soil	MHAEDSTRRGWSRRGFLQGSAAALAGAYGMAPRYGLAADIPLQYDG
JGIcombinedJ26739_1015545872	3300002245	Forest Soil	MITRHQGRTSWSRRDMLRGSAAALMGVYGSAPRYGL
Ga0062386_1010466492	3300004152	Bog Forest Soil	MIIRHPARTSWSRRDVLRGSAAALMGAYGLAPRYGLAADIPME
Ga0062386_1012844461	3300004152	Bog Forest Soil	MIIRHPARTSWSRRDVLRGSAAALMGAYRLAPRYGLAADIPTEYDGSK
Ga0066690_101640813	3300005177	Soil	MITRHPAGTSWSRRDVLRGSAAALMGAYGLAPRYGLAADIALE
Ga0066671_108091261	3300005184	Soil	MITRHSASIGWSRRDMLRGSAAALLGAYGLAPRYGLAADIPME
Ga0066388_1012374491	3300005332	Tropical Forest Soil	MSTRRSARSTLSRRDMLLGSAAALMGGYGLAPRYGLAADIP
Ga0070674_1005310731	3300005356	Miscanthus Rhizosphere	MASIRHPARTNWSRRDMLRGSAAALMGAYGLAPRYGLAADIPTEYDGSKFQMAAPE
Ga0070710_100873874	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MNTRHPARAGWSRRDMLRGSAAALMGAYGLAPRYGLAADIPT
Ga0066702_109013351	3300005575	Soil	MTTRHPARTNWSRRDILRGGSATALMGAYGFAPRYGLAAD
Ga0068856_1007891912	3300005614	Corn Rhizosphere	MNIKQTARTSLSRRDMLIGSAAALLGTYGLAPRYGLAADVPLEYD
Ga0066903_1079117542	3300005764	Tropical Forest Soil	MNTRRPAPTSFSRRDVLWGGAAALMGAYGLAPRYGLAADIP
Ga0070717_120189521	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MNTKHPARAGWSRRDMLRGSAAALMGAYGLAPRYGLAAD
Ga0075014_1008617102	3300006174	Watersheds	MDTKYPARTGWSRRDVLRGSTAAIMGIYGLAPRYGLAADIPYEYDGSKFQMAA
Ga0070712_1005475072	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MKTRRPACTSLSRRDMLLGGAAALMGVYGLAPRYGLAADIPMEYD
Ga0097621_1009954553	3300006237	Miscanthus Rhizosphere	MSISDPTTTGWSRRDMLRGSLAALMGAYGIAPRYGLAADIPYEYDGSK
Ga0079222_114893232	3300006755	Agricultural Soil	MTTRHPAHTSWSRRDILRGGSAAALMGAYGLAPRYGLAADIPMEYDG
Ga0079222_120123262	3300006755	Agricultural Soil	MITRHPARTSWSRRDMLRGGAAALMGAYGLAPRYGLGADIPMEYDGSKFQM
Ga0066658_103012221	3300006794	Soil	MTTRHPARTNWSRRDILRGGSAAALMGAYGFAPRYGLAAD
Ga0066658_106798571	3300006794	Soil	MITRHPARTSWSRRDMLRGSAAALMGAYGFAPRYGLAAD
Ga0066665_109290582	3300006796	Soil	MITRHPVRTGWSRRDMLLGSAAASMGGYGLAPRYGLAADIPMEYDGSKFQM
Ga0066659_106943013	3300006797	Soil	MTTRHPARTNWSRRDILRGGSAAALMGAYGFAPRYGLAADVPTEYDGSKFQM
Ga0066660_114654161	3300006800	Soil	MTTRHPARTNWSRRDILRGGSATALMGAYGFAPRYGLAADIPTEYDGSKFQM
Ga0099829_106732492	3300009038	Vadose Zone Soil	MIIRHPARTSWSRRDVLRGSAAASMGAYGLAPGYGLAADIPME
Ga0099827_114086751	3300009090	Vadose Zone Soil	MNTWHPARTSWSRRDILRAAALMGAYGLAPRYGLAADIP
Ga0105248_107043032	3300009177	Switchgrass Rhizosphere	MITRRRERTDWSRRDMLLGSAAALGVYGLAPRYGLAADVPLEY
Ga0105249_132165141	3300009553	Switchgrass Rhizosphere	MASIRHPARTNWSRRDMLRGSAAALMGAYGLAPRY
Ga0126384_117158042	3300010046	Tropical Forest Soil	MEDTGMMNTRHPACSSLSRRDVLLGSAAALMGAYGLAPRYGLAADVPLEYDGSK
Ga0126378_122616922	3300010361	Tropical Forest Soil	MNTRPPLRPNWSRRDVLRGSAAALLGAYGLAPRYGLAADIPLEYDGS
Ga0126381_1008260461	3300010376	Tropical Forest Soil	MEDTGMMNTRHPACSSLSRRDVLLGSAAALMGAYGLAPRYGLAADVPLEYDGSKFQMAAP
Ga0126383_130836592	3300010398	Tropical Forest Soil	MITRHPARTSWSRRDLLRGSAAALMGAYGLAPRYGFAADIPME
Ga0137391_101088251	3300011270	Vadose Zone Soil	MITKHPARTIWSRRDMLRGSAAALMGAYGLAPRYG
Ga0137391_105736563	3300011270	Vadose Zone Soil	MIIRHPARTSWSRRDVLRGSAAAMMGAYGLAPRYGLAADIPM
Ga0137389_114571571	3300012096	Vadose Zone Soil	MITRHPARTSWSRRDVLRGSAAALMGAYGLAPRYGLAADIPMEYDGS
Ga0137383_104458212	3300012199	Vadose Zone Soil	MTTRHPARTNWSRRDILRGGSAAALMGAYGFAPRYGLAADVPTEYDGSKFQMAA
Ga0150985_1118412371	3300012212	Avena Fatua Rhizosphere	MNREHLTHTPWPRRDMLRAGAAALLGAYGLAPRYGLAADVPFDYDGSK
Ga0137413_104522663	3300012924	Vadose Zone Soil	MIIRHPARTSWSRRDVLRGSAAELLRAYGLASRYGLAA
Ga0164300_105009661	3300012951	Soil	QREDIHAMKTIHPTRIEWSRRDMLRGSIAALMGGYGLAPRYGLAADIPTECDG*
Ga0164306_119323951	3300012988	Soil	MNSNHPLRTAWSRRDMLRGSAAALMGAYGLAPRFGLAAD
Ga0120181_10511671	3300013766	Permafrost	MIIRHPAPTSWSRRDVLRGSAAALMVAYGLAPRYG
Ga0134078_101889082	3300014157	Grasslands Soil	MTTRHPARTSWSRRDILYGGSAAALMGAYGLAPRYGLAADIPTEYDG*
Ga0182008_102073591	3300014497	Rhizosphere	MTRHPARTSWSRRDILRGGSAAALMGAYGLAPRYG
Ga0157376_103299353	3300014969	Miscanthus Rhizosphere	MSISDPTTTGWSRRDMLRGSLAALMGAYGIAPRYG
Ga0132257_1033410501	3300015373	Arabidopsis Rhizosphere	MNTNHLLRTAWSRRDMLRGSAAALMGAYGLAPRFGLAADIPYEYDGSK
Ga0182041_105486173	3300016294	Soil	MDTRHPARTSLSRRDMLRGSAAALMGAYGLAPRYGLAADIPMEYDGSKFQ
Ga0182034_102178652	3300016371	Soil	MNTRQPAHTGMTRRDMLRGSAAALMGAYGLAPRDGL
Ga0182040_101358981	3300016387	Soil	MNIKHPARTSLSRRDMLRGGAAALMGAYGLAPRYGLAADVPMEYD
Ga0182039_101873233	3300016422	Soil	MNIKHPARTSLSRRDMLRGGAAALMGAYGLAPRYGLAADVPMEYDGTK
Ga0163161_119259901	3300017792	Switchgrass Rhizosphere	MITRRRARTDWSRRDMLLGSAAALGVYGLAPRYGLAADVP
Ga0184624_104844481	3300018073	Groundwater Sediment	MEAKHPTPTGWSRRDMLRGSAVAMLGAYGLAPRYGLAAD
Ga0066655_111268771	3300018431	Grasslands Soil	MTTRHSARTDWSRRDILRGGSAAALMGAYGFAPRYGLAADIPTEYDGSKFQ
Ga0066667_100598203	3300018433	Grasslands Soil	MTTRHPSRTNWSRRDILRGGSAAALMGPYGFAPRYGLAADIPTEYDGSKFQMAAPE
Ga0066667_101860784	3300018433	Grasslands Soil	MHPSRTSWSRRDMLRGSAAALMGAYGLAARYGLAADIPMEY
Ga0190273_118774871	3300018920	Soil	MSTSKSMNLGWSRRDMLRGAAALLGGYGLAPRYGLAADIPYQYDGSN
Ga0210407_109294941	3300020579	Soil	MNTKHPARAGWSRRDMLRGSAAALMGAYGLAPRYGLAADIPTEY
Ga0210403_106085641	3300020580	Soil	MNTRHPARTDWSRRDVLRGSAAALMGAYGLAPRYGLAADVPLEYDGSTF
Ga0210395_101680301	3300020582	Soil	MVSRHSACAGWSRRDVLLGGAAAVVGAYGLGPRYSLAADIPLEYDGS
Ga0210401_114176311	3300020583	Soil	MITRHPARTSWSRRDMLRGSAAALMGAYGLAPRYGLAADIP
Ga0210406_110264611	3300021168	Soil	MKTRRPACTSLSRRDMLLGSAAALMGVYGLAPRYGLAADIPMEYD
Ga0210400_105640263	3300021170	Soil	MAPSRRTTRRNVIAGWSRRDVLRGSAAAIMGAYDLAPRYGLAADIPYEYDGSRFQ
Ga0210408_105717511	3300021178	Soil	MNTRHPARTSLSRRDMLRGSAAALMGAYGLAPRYGL
Ga0210408_109656681	3300021178	Soil	MNTRLPARTGWSRRDVLRGSAAALMGAYGLAPRYGLAADVPLDY
Ga0210396_112434922	3300021180	Soil	MITRHPTRTSWSRRDMLRGSAAALMGAYGLAPRYGLAADIPTEYD
Ga0210386_114788841	3300021406	Soil	MMNTRHPAPTSWSRRDVLRGSAAALMGAYGLAPRFGLADDIPMEYDGS
Ga0210402_117837401	3300021478	Soil	MITRHPARTSWSRRDMLRGSAAALMGAYGLAPRYGFAADIPMEYDGSKFQ
Ga0210410_107123872	3300021479	Soil	MITKHPARTNWTRRDMLRGSAAALMGAYGLAPRYGLAADIPLEYDGSKFQMAAL
Ga0126371_106697733	3300021560	Tropical Forest Soil	MNTRLPARTGWSRRDVLRGSAAALLGAYGFAPRYGLAADVQLEYDGSKFQM
Ga0126371_131367851	3300021560	Tropical Forest Soil	MHTDELTRAAWSRRDMLRGSAVALIGAYALAPRYGLAADIPYEYDGSKFQMAA
Ga0207693_101217383	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MNTRHPARAGWSRRDMLRGSAAALMGAYGLAPRYGLAAD
Ga0207693_104875201	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MNTRHPARTSLSRRDMLRGSAAALMGAYGLAPRYGLA
Ga0207646_119278261	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MITRYPARASWSRRDVLRGSAAALMGAYGLAPRYGLAADIPTEFDGSKFQMA
Ga0207664_119689161	3300025929	Agricultural Soil	MNTKHPARAGWSRRDMLRGSAAALMGAYGLAPRYGLAADIPT
Ga0207689_102252121	3300025942	Miscanthus Rhizosphere	MNIKHPSRSGLSRRDMLLGSAVALLGTYGLAPRYGLAADVPLEYDGSKF
Ga0207651_117367911	3300025960	Switchgrass Rhizosphere	MITRRRARTDWSRRDMLLGSAAALGVYGLAPRYGLAADVPLEYDGSKFQMAAPE
Ga0209265_10797721	3300026308	Soil	MTTRHPARTNWSRRDILYGGSAAALMGAYGFAPRYGLAADVPTEYDGSKFQMAAP
Ga0209059_12667483	3300026527	Soil	MHPSRTSWSRRDMLRGSAAALMGAYGLAPRYGLAADIPTEYDGSKFQMA
Ga0209807_11135022	3300026530	Soil	MTTRHPARTNWSRRDILRGGSAAALMGAYGFAPRYGLAADVPTEYDGSKFQMA
Ga0209527_10856531	3300027583	Forest Soil	MITRYPARASWSRRDVLRGSAAALMGAYGLAPRYGLAADIPTEFDGSKFQ
Ga0209447_101947591	3300027701	Bog Forest Soil	MNIRHPARTNWSRRDMLRGSVAALLGAYGLAPRYGLAADVPMEYDGSKFQIA
Ga0209180_100207041	3300027846	Vadose Zone Soil	MIARHPARTSWSRRDVLRGSAAALMGAYGLAPRYGLAADIPLEYDG
Ga0209701_106344761	3300027862	Vadose Zone Soil	MIIRHPARTSWSRRDVLRGSAAALMGAYGLAPRYGLAADIPMEYDGSKFQI
Ga0209590_106321412	3300027882	Vadose Zone Soil	MIIRHPARTSWSRRDVLRGSAAALMGAYGLAPRYGLAADIPMEYDGSKFQIAAPEDLVARIGR
Ga0308309_107977361	3300028906	Soil	MITRHPTRTSWSRRDMLRGSAAALMGAYGLAPRYGLAADIPTEYDGSKFQMAAP
Ga0170823_165127621	3300031128	Forest Soil	MNTRHHARTNLSRRDMLRGSAAALMGAYGLAPRYGLAADIPMEYDGSKFQ
Ga0170824_1135273542	3300031231	Forest Soil	MSTRHPTRTNWSRRDMLRGSAAALLGAYGLAPRYGLAADIPLEYDGSKFQ
Ga0170818_1040871231	3300031474	Forest Soil	MNTRHPARTDWSRRDVLRGSAAALMGAYGLTPRYGLAADVPLEYDGSKFQ
Ga0170818_1071759071	3300031474	Forest Soil	MASSRGTTRRNDIAGWSRRDVLRGSAAAIMGAYGLVPRYGLAADIPYEYD
Ga0310915_100562111	3300031573	Soil	MDTRHPARTSLSRRDMLRGSAAALMGAYGLAPRYGLAADIPMEYDGSKF
Ga0318574_103954813	3300031680	Soil	MDTRHPARTSLSRRDMLRGSAAALMGAYGLAPRYG
Ga0318572_107008772	3300031681	Soil	MNTRHPARRVWSRREMLRGSAAALLGASGFAPRYGLAADVPLEYDG
Ga0306918_100393501	3300031744	Soil	MDTRHPARTSLSRRDMLRGSAAALMGAYGLAPRYGLAADIPMEYDG
Ga0306918_101642661	3300031744	Soil	MNSRHPAHTAWSRRDVLRGGAAALMGAYGLAPRYG
Ga0306918_106946752	3300031744	Soil	MNIRHPARNRLSRRDVLRGSAAALMGAYGLAPRYGLAADVPLEYD
Ga0318502_105771251	3300031747	Soil	MDTRHPARTSLSRRDMLRGSAAALMGAYGLAPRYGLAADIPMEYD
Ga0318492_100428053	3300031748	Soil	MNTRQPAHTGMTRRDMLRGSAAALMGAYGLAPRDGLAADVPLE
Ga0318552_103216833	3300031782	Soil	MNTRRPALTGWSRRDVLRGSAAALMGAYGLAPRYGLAADVPLEYD
Ga0318523_104211191	3300031798	Soil	MNIKHPARTSLSRRDMLRGGAAALMGAYGLAPRYGLAADVPMEYDG
Ga0318497_101880873	3300031805	Soil	MNTRRPALTGWSRRDVLRGSAAALMGAYGLAPRYGLAADVPLEYDGSKFQ
Ga0318544_104479093	3300031880	Soil	MNSRHPAHTAWSRRDVLRGGAAALMGAYGLAPRYGLAADV
Ga0310916_108806991	3300031942	Soil	MNTGHPARTILSRRDMLLGSAAALMGAYGLAPRYGLAA
Ga0306926_128835891	3300031954	Soil	MNTRHPARTILSRRDMLLGSAAALMGAYGLAPRYGLAAD
Ga0307479_115177591	3300031962	Hardwood Forest Soil	MNPGQPTPAIWSRRDVFRGSAAALIAAYGLAPRYGLAADIPTEFDGSSFQ
Ga0308176_124079891	3300031996	Soil	MKTSHPTRIGLSRRDMLLGSAVGLMGAYGLAPRYGLAADI
Ga0306922_100936361	3300032001	Soil	MNIRHPARNRLSRRDVLRGSAAALMGAYGLAPRYGLAADVPLEYDGSK
Ga0306922_115073811	3300032001	Soil	MNINHSTSAAWSRRNMLRGAVTAMMGAYGLAPRYGLAADISYEFDG
Ga0318556_102481793	3300032043	Soil	MNTRRPALTGWSRRDVLRGSAAALMGAYGLAPRYGLAADV
Ga0318570_103571663	3300032054	Soil	MNTRRPALTGWSRRDVLRGSAAALMGAYGLAPRYGLAADVPLEY
Ga0318510_100732813	3300032064	Soil	MNTRHPARTSLSRRDVLLGSAAALMGAYGLAPRYGLAADIPLEYDGSKF
Ga0306924_115959011	3300032076	Soil	MNTRHPARRVWSRREMLRGSAAALLGASGFAPRYGLAADVPLEYD
Ga0318518_100450353	3300032090	Soil	MNIRHPARNRLSRRDVLRGSAAALMGAYGLAPRYGLAADVPLEYDGSKF
Ga0318577_100882651	3300032091	Soil	MNIRHPARNRLSRRDVLRGSAAALMGAYGLAPRYGLAADVP
Ga0307470_111475022	3300032174	Hardwood Forest Soil	MITRHPTRISLSRRDMLRGSAATLMGTYGLAPRYGLAA
Ga0306920_1000646229	3300032261	Soil	MDTRHPARTSLSRRDMLRGSAAALMGAYGLAPRYGLAADIPMEYDGSKFQIA
Ga0306920_1042269012	3300032261	Soil	MNTRHPARNILSRRDVLWGSAALMGAYGLAPRYGLAADIPLEYDGSKFQM
Ga0335077_109787271	3300033158	Soil	MKIRHPARNSWSRREMLLGSAAALMGAYGLAPRYGL
Ga0310811_104798742	3300033475	Soil	MTTRHPAHTSWSRRDILRGGSAAALMGAYGLAPRYGLAADIPMEYDGSKF

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.30
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.30
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F079048

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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