Metagenome Family F079043

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F079043
Family Type	Metagenome
Number of Sequences	116
Average Sequence Length	58 residues
Representative Sequence	VQPATKKLSVSAILFGILAGIIGIAAGLFLGFALGAALAAAFHVSTFEGEAG
Number of Associated Samples	104
Number of Associated Scaffolds	116

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	7.76 %
% of genes near scaffold ends (potentially truncated)	91.38 %
% of genes from short scaffolds (< 2000 bps)	93.10 %
Associated GOLD sequencing projects	99
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.53

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (98.276 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil (18.103 % of family members)
Environment Ontology (ENVO)	Unclassified (32.759 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (50.862 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 48.75% β-sheet: 0.00% Coil/Unstructured: 51.25%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.53
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.53
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 116 Family Scaffolds
PF08695	Coa1	76.72
PF04073	tRNA_edit	2.59
PF01883	FeS_assembly_P	2.59
PF13439	Glyco_transf_4	1.72
PF03976	PPK2	0.86
PF02729	OTCace_N	0.86
PF01979	Amidohydro_1	0.86
PF00534	Glycos_transf_1	0.86
PF01957	NfeD	0.86

COG ID	Name	Functional Category	% Frequency in 116 Family Scaffolds
COG2326	Polyphosphate kinase 2, PPK2 family	Energy production and conversion [C]	0.86

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	98.28 %
Unclassified	root	N/A	1.72 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	98.28 %
Unclassified	root	N/A	1.72 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	98.28 %
Unclassified	root	N/A	1.72 %

Name	Rank	Taxonomy	Distribution
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	68.97 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	11.21 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → environmental samples	2.59 %
Unclassified	root	N/A	1.72 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	68.97 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	2.59 %
Unclassified	root	N/A	1.72 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.86 %

Name	Rank	Taxonomy	Distribution
Spartobacteria	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria	12.93 %
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	5.17 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	2.59 %
Unclassified	root	N/A	1.72 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.86 %

Name	Rank	Taxonomy	Distribution
Chthoniobacterales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales	12.93 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	5.17 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	2.59 %
Unclassified	root	N/A	1.72 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.86 %

Name	Rank	Taxonomy	Distribution
Chthoniobacteraceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae	12.93 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	5.17 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	2.59 %
Unclassified	root	N/A	1.72 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.86 %

Name	Rank	Taxonomy	Distribution
Candidatus Udaeobacter	genus	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter	12.93 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	5.17 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	2.59 %
Unclassified	root	N/A	1.72 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.86 %

Name	Rank	Taxonomy	Distribution
Candidatus Udaeobacter copiosus	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	11.21 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	5.17 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	2.59 %
Unclassified	root	N/A	1.72 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.86 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2170459003\|FZ032L002JBXEX	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	535	Open in IMG/M
2170459009\|GA8DASG01BWYB3	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	511	Open in IMG/M
2199352025\|deepsgr__Contig_168431	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	739	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_100551225	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1110	Open in IMG/M
3300000955\|JGI1027J12803_100348653	All Organisms → cellular organisms → Bacteria	1015	Open in IMG/M
3300000955\|JGI1027J12803_109182902	Not Available	554	Open in IMG/M
3300000956\|JGI10216J12902_115629779	All Organisms → cellular organisms → Bacteria	516	Open in IMG/M
3300002899\|JGIcombinedJ43975_10021848	All Organisms → cellular organisms → Bacteria → Proteobacteria	1029	Open in IMG/M
3300004479\|Ga0062595_100778706	All Organisms → cellular organisms → Bacteria	784	Open in IMG/M
3300004643\|Ga0062591_102541202	All Organisms → cellular organisms → Bacteria	539	Open in IMG/M
3300005171\|Ga0066677_10687555	All Organisms → cellular organisms → Bacteria → Proteobacteria	573	Open in IMG/M
3300005174\|Ga0066680_10091063	All Organisms → cellular organisms → Bacteria	1853	Open in IMG/M
3300005179\|Ga0066684_10928887	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	566	Open in IMG/M
3300005186\|Ga0066676_10855231	All Organisms → cellular organisms → Bacteria → Proteobacteria	613	Open in IMG/M
3300005187\|Ga0066675_10310633	All Organisms → cellular organisms → Bacteria → Proteobacteria	1143	Open in IMG/M
3300005295\|Ga0065707_10390228	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	865	Open in IMG/M
3300005329\|Ga0070683_101316962	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	694	Open in IMG/M
3300005367\|Ga0070667_101139900	All Organisms → cellular organisms → Bacteria	729	Open in IMG/M
3300005434\|Ga0070709_10776481	All Organisms → cellular organisms → Bacteria → Proteobacteria	750	Open in IMG/M
3300005438\|Ga0070701_10957507	All Organisms → cellular organisms → Bacteria	594	Open in IMG/M
3300005450\|Ga0066682_10543538	All Organisms → cellular organisms → Bacteria → Proteobacteria	735	Open in IMG/M
3300005450\|Ga0066682_10564325	All Organisms → cellular organisms → Bacteria	719	Open in IMG/M
3300005553\|Ga0066695_10261017	All Organisms → cellular organisms → Bacteria	1094	Open in IMG/M
3300005614\|Ga0068856_101538019	All Organisms → cellular organisms → Bacteria → Proteobacteria	679	Open in IMG/M
3300005615\|Ga0070702_100843820	All Organisms → cellular organisms → Bacteria → Proteobacteria	712	Open in IMG/M
3300005764\|Ga0066903_102515976	All Organisms → cellular organisms → Bacteria → Proteobacteria	997	Open in IMG/M
3300005937\|Ga0081455_10672705	All Organisms → cellular organisms → Bacteria → Proteobacteria	663	Open in IMG/M
3300006175\|Ga0070712_100053505	All Organisms → cellular organisms → Bacteria	2818	Open in IMG/M
3300006796\|Ga0066665_11041089	All Organisms → cellular organisms → Bacteria → Proteobacteria	625	Open in IMG/M
3300006854\|Ga0075425_102863179	All Organisms → cellular organisms → Bacteria → Proteobacteria	530	Open in IMG/M
3300006881\|Ga0068865_100994145	All Organisms → cellular organisms → Bacteria	734	Open in IMG/M
3300007265\|Ga0099794_10289907	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	847	Open in IMG/M
3300009012\|Ga0066710_103467603	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	597	Open in IMG/M
3300009137\|Ga0066709_103047622	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	614	Open in IMG/M
3300010048\|Ga0126373_10513180	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1243	Open in IMG/M
3300010303\|Ga0134082_10355468	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	621	Open in IMG/M
3300010320\|Ga0134109_10177248	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	778	Open in IMG/M
3300010322\|Ga0134084_10108095	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	896	Open in IMG/M
3300010329\|Ga0134111_10139301	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	954	Open in IMG/M
3300010335\|Ga0134063_10391915	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	680	Open in IMG/M
3300010335\|Ga0134063_10541572	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	587	Open in IMG/M
3300010335\|Ga0134063_10616389	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	554	Open in IMG/M
3300010359\|Ga0126376_11508015	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	701	Open in IMG/M
3300010376\|Ga0126381_101003589	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1204	Open in IMG/M
3300010397\|Ga0134124_12576584	All Organisms → cellular organisms → Bacteria	551	Open in IMG/M
3300012199\|Ga0137383_10142186	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1755	Open in IMG/M
3300012201\|Ga0137365_10263999	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1279	Open in IMG/M
3300012202\|Ga0137363_10796433	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	801	Open in IMG/M
3300012208\|Ga0137376_10973599	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	727	Open in IMG/M
3300012211\|Ga0137377_10121935	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	2485	Open in IMG/M
3300012285\|Ga0137370_10997274	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	516	Open in IMG/M
3300012349\|Ga0137387_10164938	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	1582	Open in IMG/M
3300012349\|Ga0137387_10327533	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter	1108	Open in IMG/M
3300012359\|Ga0137385_10870190	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	746	Open in IMG/M
3300012361\|Ga0137360_10843148	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	789	Open in IMG/M
3300012918\|Ga0137396_11073335	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	578	Open in IMG/M
3300012927\|Ga0137416_10129357	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	1946	Open in IMG/M
3300012944\|Ga0137410_11217152	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter	649	Open in IMG/M
3300012971\|Ga0126369_10609202	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	1163	Open in IMG/M
3300012971\|Ga0126369_11923519	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	680	Open in IMG/M
3300012972\|Ga0134077_10152367	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	923	Open in IMG/M
3300012989\|Ga0164305_10277206	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	1227	Open in IMG/M
3300013297\|Ga0157378_10535299	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1175	Open in IMG/M
3300014166\|Ga0134079_10078441	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	1221	Open in IMG/M
3300015357\|Ga0134072_10418721	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	532	Open in IMG/M
3300015359\|Ga0134085_10069934	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1427	Open in IMG/M
3300015359\|Ga0134085_10509433	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	551	Open in IMG/M
3300015373\|Ga0132257_100601050	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1359	Open in IMG/M
3300016404\|Ga0182037_11904261	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	532	Open in IMG/M
3300017654\|Ga0134069_1256648	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	609	Open in IMG/M
3300018028\|Ga0184608_10111410	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	1152	Open in IMG/M
3300018028\|Ga0184608_10194998	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	886	Open in IMG/M
3300018028\|Ga0184608_10324257	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	676	Open in IMG/M
3300018054\|Ga0184621_10214440	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	689	Open in IMG/M
3300018433\|Ga0066667_10108778	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	1865	Open in IMG/M
3300018433\|Ga0066667_10590727	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	925	Open in IMG/M
3300019870\|Ga0193746_1027321	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	587	Open in IMG/M
3300019878\|Ga0193715_1056520	Not Available	838	Open in IMG/M
3300019878\|Ga0193715_1069705	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	739	Open in IMG/M
3300019879\|Ga0193723_1114380	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	753	Open in IMG/M
3300019883\|Ga0193725_1119001	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	604	Open in IMG/M
3300019885\|Ga0193747_1090844	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	746	Open in IMG/M
3300019890\|Ga0193728_1300131	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	610	Open in IMG/M
3300020001\|Ga0193731_1138669	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	606	Open in IMG/M
3300020010\|Ga0193749_1055952	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	751	Open in IMG/M
3300020018\|Ga0193721_1025891	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1554	Open in IMG/M
3300021178\|Ga0210408_10037349	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	3822	Open in IMG/M
3300021344\|Ga0193719_10003007	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	6793	Open in IMG/M
3300022534\|Ga0224452_1041921	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1346	Open in IMG/M
3300025315\|Ga0207697_10021930	All Organisms → cellular organisms → Bacteria	2616	Open in IMG/M
3300025907\|Ga0207645_10909135	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	598	Open in IMG/M
3300025910\|Ga0207684_11440339	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	563	Open in IMG/M
3300025928\|Ga0207700_10883130	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	800	Open in IMG/M
3300025936\|Ga0207670_10868756	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	754	Open in IMG/M
3300026297\|Ga0209237_1210383	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	614	Open in IMG/M
3300026305\|Ga0209688_1023155	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1203	Open in IMG/M
3300026308\|Ga0209265_1166838	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	575	Open in IMG/M
3300026317\|Ga0209154_1273693	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	566	Open in IMG/M
3300026317\|Ga0209154_1310443	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	518	Open in IMG/M
3300026318\|Ga0209471_1332268	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	504	Open in IMG/M
3300026323\|Ga0209472_1034077	All Organisms → cellular organisms → Bacteria	2303	Open in IMG/M
3300026343\|Ga0209159_1283658	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	505	Open in IMG/M
3300026538\|Ga0209056_10730052	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	502	Open in IMG/M
3300026540\|Ga0209376_1076512	All Organisms → cellular organisms → Bacteria	1797	Open in IMG/M
3300026557\|Ga0179587_10452507	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	840	Open in IMG/M
3300026816\|Ga0207509_103967	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	725	Open in IMG/M
3300028379\|Ga0268266_10099100	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	2565	Open in IMG/M
3300028768\|Ga0307280_10407879	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	508	Open in IMG/M
3300028884\|Ga0307308_10645583	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	507	Open in IMG/M
3300031057\|Ga0170834_107013781	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	793	Open in IMG/M
3300031231\|Ga0170824_108391846	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	512	Open in IMG/M
3300031446\|Ga0170820_14184372	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	504	Open in IMG/M
3300031474\|Ga0170818_112036887	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	656	Open in IMG/M
3300031823\|Ga0307478_11642067	All Organisms → cellular organisms → Bacteria	530	Open in IMG/M
3300031941\|Ga0310912_10820505	All Organisms → cellular organisms → Bacteria	718	Open in IMG/M
3300033475\|Ga0310811_10160557	All Organisms → cellular organisms → Bacteria	2812	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	91.38%
Host-Associated	Host-Associated	8.62%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	87.07%
Plants	Host-Associated → Plants	8.62%
Aquatic	Environmental → Aquatic	4.31%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	87.07%
Sediment	Environmental → Aquatic → Sediment	4.31%
Rhizoplane	Host-Associated → Plants → Rhizoplane	4.31%
Rhizosphere	Host-Associated → Plants → Rhizosphere	4.31%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	78.45%
Loam	Environmental → Terrestrial → Soil → Loam	8.62%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	4.31%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	3.45%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.59%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.72%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.86%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	44.83%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	24.14%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	6.90%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.90%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	4.31%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	3.45%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.59%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.59%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.72%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.86%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.86%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.86%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	18.10%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	12.93%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	12.93%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	11.21%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	5.17%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	4.31%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	4.31%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	3.45%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	3.45%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.59%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.72%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	1.72%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.72%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.72%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.86%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.86%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.86%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.86%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.86%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.86%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.86%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.86%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.86%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.86%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.86%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.86%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.86%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.86%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.86%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.86%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.86%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459003	Grass soil microbial communities from Rothamsted Park, UK - March 2009 indirect MP BIO 1O1 lysis 0-21cm	Environmental	Open in IMG/M
2170459009	Grass soil microbial communities from Rothamsted Park, UK - July 2009 indirect DNA Tissue lysis 0-10cm	Environmental	Open in IMG/M
2199352025	Soil microbial communities from Rothamsted, UK, for project Deep Soil - DEEP SOIL	Environmental	Open in IMG/M
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300002899	Soil microbial communities from Manhattan, Kansas, USA - Combined assembly of Kansas soil 100-500um Nextera (ASSEMBLY_DATE=20140607)	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005171	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126	Environmental	Open in IMG/M
3300005174	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129	Environmental	Open in IMG/M
3300005179	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133	Environmental	Open in IMG/M
3300005186	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125	Environmental	Open in IMG/M
3300005187	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124	Environmental	Open in IMG/M
3300005295	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3	Environmental	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005367	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG	Host-Associated	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005438	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG	Environmental	Open in IMG/M
3300005450	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131	Environmental	Open in IMG/M
3300005553	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144	Environmental	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300005615	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300007265	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010303	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09182015	Environmental	Open in IMG/M
3300010320	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_11112015	Environmental	Open in IMG/M
3300010322	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010329	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_11112015	Environmental	Open in IMG/M
3300010335	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09082015	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012285	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaG	Environmental	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012972	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300014166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09182015	Environmental	Open in IMG/M
3300015357	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_5_0_1 metaG	Environmental	Open in IMG/M
3300015359	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09182015	Environmental	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300017654	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300018054	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_b1	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300019870	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1m1	Environmental	Open in IMG/M
3300019878	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2m2	Environmental	Open in IMG/M
3300019879	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2m2	Environmental	Open in IMG/M
3300019883	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2a2	Environmental	Open in IMG/M
3300019885	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1m2	Environmental	Open in IMG/M
3300019890	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c1	Environmental	Open in IMG/M
3300020001	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1a2	Environmental	Open in IMG/M
3300020010	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1s2	Environmental	Open in IMG/M
3300020018	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2s2	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021344	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2a2	Environmental	Open in IMG/M
3300022534	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_b1	Environmental	Open in IMG/M
3300025315	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Host-Associated	Open in IMG/M
3300025907	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025936	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)	Environmental	Open in IMG/M
3300026297	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_40cm (SPAdes)	Environmental	Open in IMG/M
3300026305	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_142 (SPAdes)	Environmental	Open in IMG/M
3300026308	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_103 (SPAdes)	Environmental	Open in IMG/M
3300026317	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121 (SPAdes)	Environmental	Open in IMG/M
3300026318	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128 (SPAdes)	Environmental	Open in IMG/M
3300026323	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130 (SPAdes)	Environmental	Open in IMG/M
3300026343	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144 (SPAdes)	Environmental	Open in IMG/M
3300026538	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 (SPAdes)	Environmental	Open in IMG/M
3300026540	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134 (SPAdes)	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300026816	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-SCHO21-B (SPAdes)	Environmental	Open in IMG/M
3300028379	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300028768	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_119	Environmental	Open in IMG/M
3300028884	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_195	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300033475	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YC	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
E4A_09805280	2170459003	Grass Soil	VQPATKKLSVSSILFGILAGIIGIVAGLFLGFALGAALAAAFHVSTFEGEAGYFAAAWRS
F47_06110210	2170459009	Grass Soil	VQLDTKKLSVSSILFGIFAGIIGIAAGLFLGFALGAALAAAFHVSMFEGEAGYFAAAIALIVTCVVAPGL
deepsgr_02827720	2199352025	Soil	VQPATKKLSVSTIFFGIIAGIIGIGAGLFLGFALGAALAAAFHVSTFEGEAG
INPhiseqgaiiFebDRAFT_1005512253	3300000364	Soil	MNSYHQVQTTTKKLSISAILFXILAGFIXVGGGLILGXALGSAXAAALHVSPMEGGAGYF
JGI1027J12803_1003486531	3300000955	Soil	VQPGTKKLSVGAILFGILAGIIGIGGGLFLGFALGAALAAAFHVSTFEGEAGYFA
JGI1027J12803_1091829022	3300000955	Soil	SAILFGILAGVVGVAAGLGFGIALGSVLAAAFHVSPMEGGAGYFAVAIALIVALVVTPA
JGI10216J12902_1156297792	3300000956	Soil	LRPAIKNLSVDAILLGILGGIIGIATGLFLGFALGSALAAAFHVSTF
JGIcombinedJ43975_100218483	3300002899	Soil	LQAATKKLSVSAILFGILAGLIGVGGGLILGFALGSALAAALHVSPMEGGAGYLAVAIAFIVTLIVTPST
Ga0062595_1007787061	3300004479	Soil	VLYIARATGGPVALTSFVQPATTKLSVSAVLFGILGGIVGIGTGLFLGFASGAALAA
Ga0062591_1025412021	3300004643	Soil	VAPVALISFVQPATTKLSVSAVLYGILGGIVGIGAGLFLGFALGAALAAVFHVSTFEGE
Ga0066677_106875552	3300005171	Soil	VKPAINKLSVSAILFGILGGILGIAAGLFLGFALGAALAAALHVPS
Ga0066680_100910633	3300005174	Soil	VKAAINTLSVSAILFGILAGIIGIGAGLFLGFALGAALAASLHVPSREGEATVTLPLP*
Ga0066684_109288872	3300005179	Soil	LQAAAKKLPVSAILFGILAGIVGIGGGLFLGFGVGAALAAALHVSTFEGEAGYFAAAIA
Ga0066676_108552312	3300005186	Soil	VKPAINKLSVSAILFGILGGILGIAAGLFLGFALGAALAAALHVPSREGESGYFAVAIAL
Ga0066675_103106331	3300005187	Soil	VKAAINKISVSAILLGILGGIIGLGAGLFLGFALGAALAAAFHVSTFEGEAGYF
Ga0065707_103902281	3300005295	Switchgrass Rhizosphere	MNSDHQLQAATKKLSVSDILFGIFAGFIGVGGGLILGLALGSALAAALHVSPM
Ga0070683_1013169623	3300005329	Corn Rhizosphere	VQPPTKKLSVSAILFGIIAGIIGIGGGLFLGFALGAALAAAFHV
Ga0070667_1011399002	3300005367	Switchgrass Rhizosphere	VAPVALISFVQPATTKLSVSTVLFDILGGIVGIGAGLFLGFALGAALAAVFHVSTFEG*
Ga0070709_107764811	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	VQLATKKLSVSAILFGILAGIVGIAAGLFLGFALGAALAAAFHVSTFEGEAGYFAAAI
Ga0070701_109575072	3300005438	Corn, Switchgrass And Miscanthus Rhizosphere	LQAATKKLPVSAILFGILAGIVGGVVGLVLGIFLGSALAAAFHVSPMEGGAGYFAV
Ga0066682_105435382	3300005450	Soil	VQPAAKKLSVSAILFGILAGIIGIGAGLILGFALGSALAAALHVSTFEGEA
Ga0066682_105643251	3300005450	Soil	MKAAINKLSVSSILFGILGGIIGIAAGLFLGFALGSVLAAALHVPSR
Ga0066695_102610173	3300005553	Soil	MQPATKKLSVSAILFGILAGIVGIAAGLFLGFALGAALAAAFHVSTFEG
Ga0068856_1015380192	3300005614	Corn Rhizosphere	VQLATKKLSVSAILFGILAGIVGIAAGLFLGFALGAALAAAFHVSTFEGEAGYFAA
Ga0070702_1008438201	3300005615	Corn, Switchgrass And Miscanthus Rhizosphere	VQPATKKLSVSAILFGILAGIIGIGGGLFLGFALGAGLAAAFHVSTFEGEAGYFAVAI
Ga0066903_1025159761	3300005764	Tropical Forest Soil	MQATTKKLSVSAILFGILAGIVGLAAGLFLGFLLGGALSAAFHVSTFEGEAGYFAAA
Ga0081455_106727052	3300005937	Tabebuia Heterophylla Rhizosphere	VQLATKKPSVSAILFGILAGIIGIAAGLFLGFALGAALAAAFHVSRFEGEAGYFAAAIALIVTGIVA
Ga0070712_1000535057	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	VQPATKKLSVNAILFGILAGIIGIAAGLFLGFALGAALAAAFHVSTFEGGAGYFAAAIALLVTCIVAPGL
Ga0066665_110410891	3300006796	Soil	MEAALKKLSVSAILLGIIGGIIGLAAGLFLGFALGAILARVMHISSFEGGAGY
Ga0075425_1028631791	3300006854	Populus Rhizosphere	VQAATKKLSVSAILFGILAGIIGIAAGLFLGFALGAGLAAAFHVSTFEG
Ga0068865_1009941451	3300006881	Miscanthus Rhizosphere	VAPVALISFVQPATTKLSVSAVLFGILGGIVGIGAGLFLGFALGAALAAVF
Ga0099794_102899073	3300007265	Vadose Zone Soil	VTAAINKLSVSAILFGIIAGIVGIGAGLFLGLALGAALAAAFHVSTFEGEAGYLPLQLR*
Ga0066710_1034676031	3300009012	Grasslands Soil	MEQPPPISGESKKLPLSAILFGILAGIVGAAVGLGLGFVLGSVLAAAFHVSTMEGEVGYFVVSIALLV
Ga0066709_1030476223	3300009137	Grasslands Soil	VQPATKKLSASAILFGILAGIIGIAAGLFLGFALGATLAAAFHVSTFEGEAGYFAAA
Ga0126373_105131803	3300010048	Tropical Forest Soil	MQSATKGLSVSAVLLGIIGGIIGLAAGLSLGFALGAALASVFHVSSFEGGAGYFAVSIAILVTIL
Ga0134082_103554681	3300010303	Grasslands Soil	VKPAINRLSVSAILFGILGGILGIAAGLFLGFALGAALATALHVPSREGESG
Ga0134109_101772483	3300010320	Grasslands Soil	VKAAINNLSVSAILLAILGGIIGIGAGLFLGFALGAALATAFHVSTFEGEAGYF
Ga0134084_101080951	3300010322	Grasslands Soil	MKAAINKLSVSSILFGILGGIIGIAAGLFLGFALGSVLAAALHVPSREGEAAYFTVAIALIVACIVVPVSILATLY
Ga0134111_101393013	3300010329	Grasslands Soil	MKAAINKISVTAILFGILGGAIGIAAGLFLGFALGSALAAGFHVPAREGEAAYFTVAIALIVACIVTPGSILVTLYWR
Ga0134063_103919152	3300010335	Grasslands Soil	MKAAINKISVTAILFGILGGASGIAAGLFLGFALGSALAAGFHVPAREGEAAYFTVAIALIVACIVTPGSILVTLYW
Ga0134063_105415722	3300010335	Grasslands Soil	VKAAINNLSVSAILLAILGGIIGIGAGLFLGFALGEALAAVFHVSTFEGE
Ga0134063_106163892	3300010335	Grasslands Soil	VKAAINNLSVSAILLAILGGIIGIGAGLFLGFALGAALAAAFHVSTFEGEAGYFAGMIAILVTLIVTPVSILL
Ga0126376_115080151	3300010359	Tropical Forest Soil	VQSATKKLSLSAILFGILAGIIGIGAGLLLGFALGAILAKVLHVSSFEGGAGYFAI
Ga0126381_1010035891	3300010376	Tropical Forest Soil	LQAATKKLSFSAILFGILGGIIGLGAGLFLGFALGSALAATFHVSTFEG
Ga0134124_125765841	3300010397	Terrestrial Soil	LQAATKKLPVSAILFGILVGIVGGVVGLVLGIFLGSALAAAFHVSPMEGGAGYFAVAIALLVGALVTPTSIVL
Ga0137383_101421864	3300012199	Vadose Zone Soil	VRPATKKLSVSAILFGILAGIIGIVAGLFLGFALGAALAAMFHVSTFEGGAGYFAA
Ga0137365_102639991	3300012201	Vadose Zone Soil	MQPTTKKLSVSAILFGILAGVIGIAGGLFLGFALGAALAAAFHVSTFEGEAGYF
Ga0137363_107964332	3300012202	Vadose Zone Soil	VQPATKKLSVSAILFGILAGIIGITAGLFLGFALGAALAAAFHVSTFEGEAGYFAARSRYS*
Ga0137376_109735993	3300012208	Vadose Zone Soil	VQPATKKLSVSAILLGILGGIVGIAAGLFLGFALGAALAAAFHVSTFEGEAGYFA
Ga0137377_101219351	3300012211	Vadose Zone Soil	LQAATRKLSVSAILFGILAGFIGVEGGLILGFVLGGALAAALHVSTFEGEAG
Ga0137370_109972742	3300012285	Vadose Zone Soil	VKAAINKISVSAILLGILGGIIGLGAGLFLGFALGAALAAAFHVSTFEGEAGYFAVMIAVLVTLIVT
Ga0137387_101649381	3300012349	Vadose Zone Soil	VKAAINNLSVSAILLAILGGIIGIGAGLFLGFALGAALAAAFHVSTFEGEAGYFAV
Ga0137387_103275333	3300012349	Vadose Zone Soil	VKAAINNLSVSAILLAILGGIIGIGAGLFLGFALGAALAAAFHVSTFEGEAGYFAVMIAVLVTLIVTPVSI
Ga0137385_108701901	3300012359	Vadose Zone Soil	VQPATKKLSVSAILFGILGGIIGIVAGLFLGFALCAALAAMFHVSTFEGEAGYFA
Ga0137360_108431483	3300012361	Vadose Zone Soil	VQPATKKLSVSAILFGILAGIIGIAAGLFLGFALGAALAAAFHVSTFEGEAG
Ga0137396_110733352	3300012918	Vadose Zone Soil	LITPLEPATKKLSVSAILFGILAGIIGIAAGLFLGFALGAALAAAFHVSTFEGEAGYFAT
Ga0137416_101293576	3300012927	Vadose Zone Soil	VQPATKKLSVSAILFGILGGIIGIAAGLFLGFALGSALAAAFHVSTFEGEAGYFA
Ga0137410_112171521	3300012944	Vadose Zone Soil	VTKKLSVSAILFGILAGIIGIAAGLFLGFALGAALAAAFHVST
Ga0126369_106092023	3300012971	Tropical Forest Soil	VQPATKKLSVTAILFGIVAGIIGIAGGLLLGFALGAGLAAAFHVSSFEGEAGYFAAAIALIVTCIVAPGPDCSYALLAQH
Ga0126369_119235192	3300012971	Tropical Forest Soil	MKAAINKLSISAILFGILGGIIGIAAGLFLGFVLGSALAAALHVPGREGESGYFAVAIALIVTCIVTPVSILVTLY
Ga0134077_101523671	3300012972	Grasslands Soil	VKAAINNLSVSAILLAILGGIIGIGAGLFLGFALGAALAAAFHVSTFEGEAGYFAGMIAILVTLIVTPVSILLTLY
Ga0164305_102772061	3300012989	Soil	MQTGTNKLSVSSILFGIVGGIIGLAAGLFLGFALGAALASVFHVSSFEGG
Ga0157378_105352993	3300013297	Miscanthus Rhizosphere	VHLATTKLSVSAILFGILAGIVGIAAGLFLGFALGAALAAAFHVSTFEGE
Ga0134079_100784411	3300014166	Grasslands Soil	VQSAIKNLSVSAILLGILAGIIGVGAGLFLGFALGAALAAAFHVSTFEGEAGYF
Ga0134072_104187211	3300015357	Grasslands Soil	VQPATKKLSVSAILFGILAGIIGIAAGLFLGFALGAALAAAFHVSTFEGGAGYFAAAIAL
Ga0134085_100699341	3300015359	Grasslands Soil	VTTPLQAATKKLPVSAILFGILAGIIGIAAGLFLGFALGAALAAAFHISTF
Ga0134085_105094332	3300015359	Grasslands Soil	MKAAINKISVTAILFGILGGAIGIAAGLFLGFALGSALAAGFHVPAREGEAAYFTVAIALIVACIVTPGSILVTLYWRGVR
Ga0132257_1006010504	3300015373	Arabidopsis Rhizosphere	VQPATKKLSVSAILFGILAGIIGIGGGLFLGFALGAGLAAAFHVSTFEGEAGYFA
Ga0182037_119042611	3300016404	Soil	MQVASKKLSVSAILLGILGGIIGLAAGLSLGFALGAILARVLHISSFEGGAGYFAV
Ga0134069_12566481	3300017654	Grasslands Soil	MQPATKKLSVSAILFGILAGIIGVAAGLFLGFALGAALAAVFHVSTFEGGAGYFAAAIALIVTCIVAPGLIVLA
Ga0184608_101114101	3300018028	Groundwater Sediment	MKAAINKLSVSSILFGILGGIIGIAAGLFLGFALGSVLAAAFHVPSREGEAAYFTVAIALIVTCIVT
Ga0184608_101949982	3300018028	Groundwater Sediment	MNSDHQLQPATKKLSVSAILFGILAGFIGVGGGLVLGLALGSALAAALHVSPMEGGAGYFAVAIALIVTLIVITCRPIQ
Ga0184608_103242571	3300018028	Groundwater Sediment	MNSDHQLRAETKKLSVSAILFGILAGFIGVGGGLILGLALGSALAAALHVSPMEGGAG
Ga0184621_102144401	3300018054	Groundwater Sediment	VQPATRKLSVSTILFGIIAGIIGIGAGLFLGFALGAALAAAFHVSTFEGEAGYFAAAIAVLVTCVV
Ga0066667_101087781	3300018433	Grasslands Soil	VQPATKKLSVSAILFGILAGIIGIAAGLFLGFALGAALAAAFHVSTFEGGAGYFAAAIALLVTCIVAPG
Ga0066667_105907273	3300018433	Grasslands Soil	VQPATKKLSVGAILFGILAGIIGIAAGLFLGFALGAALAAALHVPAREGEAAYFTVAIALIVACIV
Ga0193746_10273211	3300019870	Soil	VQPATRKLSVSAILFGIITGIIGIGGGLFLGFALGAALAAAFHVSTFEGGA
Ga0193715_10565201	3300019878	Soil	LQAATKKLSVSAILFGILAGVVGVAVGLGFGIALGSVLAAAFHVSPMEGGAGYFAVA
Ga0193715_10697052	3300019878	Soil	VKAAINNLSVSAILLAILGGIIGIAAGLFLGFALGAALAAAFHVSTFEGEAGYFAVIIAILVTL
Ga0193723_11143801	3300019879	Soil	VKAAINNLSVSAILLAILGGIIGIGAGLFLGFALGAALAAAFHVSTFEGAAGY
Ga0193725_11190011	3300019883	Soil	VQIATKKLSISAILFGILAGIIGIGGGLFLGFALGAGLAAAFHVSTFEGEASYFAAAIALIVT
Ga0193747_10908442	3300019885	Soil	VQPATRKLSVSAILFGIIAGIIGIGGGLFLGFALGAALAAAFHVSTFEGGAGYFAGAIAVLVTCV
Ga0193728_13001311	3300019890	Soil	VQPATKKLSISAILFGILGGIIGIAAGLFLGFALGAALAAALHVPAREGEAA
Ga0193731_11386692	3300020001	Soil	VTAAINKISVSAILLAILGGIIGIGAGLFLGFALGAALAAAFHVSTFEG
Ga0193749_10559521	3300020010	Soil	LQAATKKLSVSAILFGILAGAVGVAVGLGFGIALGSVLAAAFHVSPMEGGAGYFAVAISLMF
Ga0193721_10258911	3300020018	Soil	VQPATKKLSVSAILFGILAGIIGIAAGLFLGFALGAALAAAFHVSTFEGE
Ga0210408_100373492	3300021178	Soil	VQLATKKLSVSAILFGILAGIIGIAAGLFLGFALGAALAAAFHVSSFEGEAG
Ga0193719_100030077	3300021344	Soil	MKAAINKLSVSSILFGILGGIIGIAVGLFLGFALGSVLAAALHVPSREGEAAYFTVAIALIVACIVTPVSILATLY
Ga0224452_10419211	3300022534	Groundwater Sediment	MNSDHQLQAATKKLSVSAILFGILAGFIGVGGGLILGFALGSALAAALHVSPMEG
Ga0207697_100219305	3300025315	Corn, Switchgrass And Miscanthus Rhizosphere	VQPATRKLSVSAILFGIIAGIIGIGGGLFLGFALGAALAAAFYVSTFEGEAGYFAAAIALLVTC
Ga0207645_109091351	3300025907	Miscanthus Rhizosphere	VQPATKKLSVSAILFGILAGIIGIGGGLFLGFALGAGLAAAFHVSTFE
Ga0207684_114403392	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	VKPAINKLSVSAILFGILGGILGIAAGLFLGFALGSALAAALHVPSREGEAAYFTVAIALIATCI
Ga0207700_108831301	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	VQPATKKLSISAILFGIVAGIIGIAAGLFLGFALGAALAAAFHVSTFEGEAGYFAAAI
Ga0207670_108687561	3300025936	Switchgrass Rhizosphere	VQLATKKLSVSAILFGILAGIVGIAAGLFLGFALGAALAAAFYVSTFEGEAGYFAAAIALIVT
Ga0209237_12103831	3300026297	Grasslands Soil	VKAAINTLSVSAILFGILAGIIGIGAGLFLGFALGAALAASLHVPSREGEATVTLPLP
Ga0209688_10231551	3300026305	Soil	VKPAINRLSVSAILFGILGGILGIAAGLFLGFALGAALAAALHVPSREGESGYFAVAIALIVTC
Ga0209265_11668381	3300026308	Soil	LRATIEKLSFSATLFGILGGIIGIGGGLFLGFALGAALAAAFHVSSFEGEA
Ga0209154_12736931	3300026317	Soil	VTTPVQPAKKKLPVSAILFGILAGIIGIAAGLFLGFALGAALAAAFHVSTFEGEAGLFCRRDR
Ga0209154_13104431	3300026317	Soil	VKPAINRLSVSAILFGILGGILGIAAGLFLGFALGAALAAALHVPSRE
Ga0209471_13322681	3300026318	Soil	VKPAINRLSVSAILFGILGGILGIAAGLFLGFALGAALAAALHVP
Ga0209472_10340771	3300026323	Soil	VKAAINKLSVSAILLAILGGIIGIGAGLFLGFALGAALATAFHVSTFEGE
Ga0209159_12836581	3300026343	Soil	MEAAPKKLSVSAILLGIIGGIIGLAAGLFLGFAIGAILARVMHISSFEG
Ga0209056_107300522	3300026538	Soil	VKAAINNLSVSAILLAILGGIIGIGAGLFLGFALGAALAAAFHVSTF
Ga0209376_10765121	3300026540	Soil	VKAAINKLSVSAILLAILGGIIGIGAGLFLGFALGAALATAFHVSTF
Ga0179587_104525073	3300026557	Vadose Zone Soil	VQLATKKLSISAILFGILAGIIGVAAGLFLGFALGAALAAAFHVSTFEGEAGYFAALIAILVTLIVTPSSIVLTLY
Ga0207509_1039672	3300026816	Soil	VQPAIKNLSVSAILLGILGGIIGIAAGLFLGFALGSALAAVFHVSTF
Ga0268266_100991002	3300028379	Switchgrass Rhizosphere	VAPVALISFVQPATTKLSVSAVLFGILGGIVGIGAGLFLGFALGAALAAVFHVSTFEG
Ga0307280_104078792	3300028768	Soil	MKAAINNLSVSAILLAILGGIIGIGAGLFLGFALGAALAAAFHVSTFEGEAGYF
Ga0307308_106455831	3300028884	Soil	VQPATKKLSISAILFGILGGIIGIAAGLFLGFALGAALAAALHVPAREGEAAYFTVAI
Ga0170834_1070137813	3300031057	Forest Soil	VQPATKKLSVNAILFGILAGIIGIAAGLFLGFGLGAALAAAFHVSTFEAEAGYFAAAIALLVACIVAPGLILLTLY
Ga0170824_1083918461	3300031231	Forest Soil	MQTAPKKLRVSAILLGIVGGIVGLAAELFLGFALGAILARVMHVSSFEGGA
Ga0170820_141843721	3300031446	Forest Soil	VQPATKRLSVSAILFGIVAGVIGIAAGLFLGFALGAALAAAFHVSTFEG
Ga0170818_1120368871	3300031474	Forest Soil	VQPATKKLSVSAILFGIVAGIIGIAAGLFLGFALGAALAAAFHVSTFEG
Ga0307478_116420671	3300031823	Hardwood Forest Soil	MQSATKKPSVNAILLGIVGGIIGIASGLFLGFALGAALAAALHVPSREGEAAYFTVAIALIVTSIVTPVSILVTLYW
Ga0310912_108205052	3300031941	Soil	VKAAINRLSVSTVLFRILGGIIGIAVGLFLGFALGSALAATLHVPELDYQDR
Ga0310811_101605571	3300033475	Soil	VQPATKKLSVSAILFGILAGIIGIAAGLFLGFALGAAVAAGFHVSTFEGEAGYFAAAIAL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F079043

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences