Metagenome / Metatranscriptome Family F079032

Basic Information
Family ID	F079032
Family Type	Metagenome / Metatranscriptome
Number of Sequences	116
Average Sequence Length	42 residues
Representative Sequence	DGAWSPAAIDVIRHSLKELGILGAVPEAKAIYNDQFVPVRF
Number of Associated Samples	96
Number of Associated Scaffolds	116

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	2.61 %
% of genes near scaffold ends (potentially truncated)	95.69 %
% of genes from short scaffolds (< 2000 bps)	93.10 %
Associated GOLD sequencing projects	93
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.43

Most Common Taxonomy
Group	Bacteria (96.552 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (25.862 % of family members)
Environment Ontology (ENVO)	Unclassified (31.897 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (60.345 % of family members)

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 23.19% β-sheet: 0.00% Coil/Unstructured: 76.81%
Feature Viewer

Powered by Feature Viewer

Pfam ID	Name	% Frequency in 116 Family Scaffolds
PF05378	Hydant_A_N	31.90
PF00005	ABC_tran	23.28
PF01321	Creatinase_N	8.62
PF00557	Peptidase_M24	8.62
PF03401	TctC	6.03
PF02538	Hydantoinase_B	1.72
PF09084	NMT1	0.86
PF02423	OCD_Mu_crystall	0.86
PF13924	Lipocalin_5	0.86
PF02668	TauD	0.86
PF03480	DctP	0.86
PF06347	SH3_4	0.86

COG ID	Name	Functional Category	% Frequency in 116 Family Scaffolds
COG0145	N-methylhydantoinase A/oxoprolinase/acetone carboxylase, beta subunit	Amino acid transport and metabolism [E]	63.79
COG0006	Xaa-Pro aminopeptidase	Amino acid transport and metabolism [E]	8.62
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	6.03
COG0146	N-methylhydantoinase B/oxoprolinase/acetone carboxylase, alpha subunit	Amino acid transport and metabolism [E]	3.45
COG0715	ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component	Inorganic ion transport and metabolism [P]	0.86
COG2175	Taurine dioxygenase, alpha-ketoglutarate-dependent	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.86
COG2423	Ornithine cyclodeaminase/archaeal alanine dehydrogenase, mu-crystallin family	Amino acid transport and metabolism [E]	0.86
COG4521	ABC-type taurine transport system, periplasmic component	Inorganic ion transport and metabolism [P]	0.86

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	96.55 %
Unclassified	root	N/A	3.45 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	96.55 %
Unclassified	root	N/A	3.45 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	96.55 %
Unclassified	root	N/A	3.45 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	58.62 %
Unclassified	root	N/A	3.45 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.86 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	56.90 %
Unclassified	root	N/A	3.45 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.86 %
Blastocatellia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia	0.86 %

Name	Rank	Taxonomy	Distribution
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	36.21 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	9.48 %
Unclassified	root	N/A	3.45 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.86 %
unclassified Blastocatellia	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia	0.86 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.86 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	9.48 %
Beijerinckiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae	8.62 %
Unclassified	root	N/A	3.45 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	2.59 %
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	0.86 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.86 %
Blastocatellia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	0.86 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.86 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	9.48 %
Beijerinckia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Beijerinckia	8.62 %
Unclassified	root	N/A	3.45 %
Chelativorans	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Chelativorans	2.59 %
unclassified Acetobacteraceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → unclassified Acetobacteraceae	0.86 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.86 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.86 %
Blastocatellia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	0.86 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	9.48 %
unclassified Beijerinckia	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Beijerinckia → unclassified Beijerinckia	8.62 %
Unclassified	root	N/A	3.45 %
unclassified Chelativorans	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Chelativorans → unclassified Chelativorans	2.59 %
Acetobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → unclassified Acetobacteraceae → Acetobacteraceae bacterium	0.86 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.86 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.86 %
Blastocatellia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	0.86 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	9.48 %
Beijerinckia sp. 28-YEA-48	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Beijerinckia → unclassified Beijerinckia → Beijerinckia sp. 28-YEA-48	8.62 %
Unclassified	root	N/A	3.45 %
Chelativorans sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Chelativorans → unclassified Chelativorans → Chelativorans sp.	1.72 %
Chelativorans sp. J32	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Chelativorans → unclassified Chelativorans → Chelativorans sp. J32	0.86 %
Acetobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → unclassified Acetobacteraceae → Acetobacteraceae bacterium	0.86 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.86 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.86 %
Blastocatellia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	0.86 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300004268\|Ga0066398_10187905	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	539	Open in IMG/M
3300004281\|Ga0066397_10014392	All Organisms → cellular organisms → Bacteria	1081	Open in IMG/M
3300005332\|Ga0066388_102621954	All Organisms → cellular organisms → Bacteria	918	Open in IMG/M
3300005332\|Ga0066388_103233072	All Organisms → cellular organisms → Bacteria	832	Open in IMG/M
3300005332\|Ga0066388_105950034	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	616	Open in IMG/M
3300005332\|Ga0066388_107734475	All Organisms → cellular organisms → Bacteria	538	Open in IMG/M
3300005555\|Ga0066692_10080763	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Chelativorans → unclassified Chelativorans → Chelativorans sp.	1887	Open in IMG/M
3300005586\|Ga0066691_10479176	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	744	Open in IMG/M
3300005764\|Ga0066903_101506259	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Chelativorans → unclassified Chelativorans → Chelativorans sp.	1270	Open in IMG/M
3300005764\|Ga0066903_104225206	All Organisms → cellular organisms → Bacteria	768	Open in IMG/M
3300005764\|Ga0066903_108027373	All Organisms → cellular organisms → Bacteria	541	Open in IMG/M
3300005921\|Ga0070766_10510003	All Organisms → cellular organisms → Bacteria	800	Open in IMG/M
3300006047\|Ga0075024_100198470	All Organisms → cellular organisms → Bacteria	939	Open in IMG/M
3300006057\|Ga0075026_100640471	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	629	Open in IMG/M
3300006175\|Ga0070712_100452838	All Organisms → cellular organisms → Bacteria	1069	Open in IMG/M
3300006175\|Ga0070712_101416003	Not Available	607	Open in IMG/M
3300006176\|Ga0070765_102285660	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	504	Open in IMG/M
3300006604\|Ga0074060_11108075	All Organisms → cellular organisms → Bacteria	567	Open in IMG/M
3300006800\|Ga0066660_11122725	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	621	Open in IMG/M
3300006844\|Ga0075428_102374104	All Organisms → cellular organisms → Bacteria	545	Open in IMG/M
3300006969\|Ga0075419_11441767	All Organisms → cellular organisms → Bacteria	515	Open in IMG/M
3300009525\|Ga0116220_10418449	All Organisms → cellular organisms → Bacteria	601	Open in IMG/M
3300009792\|Ga0126374_10475198	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	895	Open in IMG/M
3300010041\|Ga0126312_11429937	All Organisms → cellular organisms → Bacteria	513	Open in IMG/M
3300010043\|Ga0126380_10219465	All Organisms → cellular organisms → Bacteria	1290	Open in IMG/M
3300010046\|Ga0126384_10709399	All Organisms → cellular organisms → Bacteria	892	Open in IMG/M
3300010337\|Ga0134062_10476761	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	623	Open in IMG/M
3300010359\|Ga0126376_10956003	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	853	Open in IMG/M
3300010359\|Ga0126376_11188503	All Organisms → cellular organisms → Bacteria	777	Open in IMG/M
3300010360\|Ga0126372_10405090	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1246	Open in IMG/M
3300010362\|Ga0126377_10818258	All Organisms → cellular organisms → Bacteria	991	Open in IMG/M
3300010376\|Ga0126381_104269175	All Organisms → cellular organisms → Bacteria	554	Open in IMG/M
3300010398\|Ga0126383_10516781	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1255	Open in IMG/M
3300010398\|Ga0126383_10732077	All Organisms → cellular organisms → Bacteria	1069	Open in IMG/M
3300012200\|Ga0137382_10614010	All Organisms → cellular organisms → Bacteria	777	Open in IMG/M
3300012205\|Ga0137362_10373102	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1236	Open in IMG/M
3300012205\|Ga0137362_11601277	All Organisms → cellular organisms → Bacteria	538	Open in IMG/M
3300012210\|Ga0137378_10522815	All Organisms → cellular organisms → Bacteria	1094	Open in IMG/M
3300012908\|Ga0157286_10429406	All Organisms → cellular organisms → Bacteria	520	Open in IMG/M
3300012917\|Ga0137395_10092733	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1992	Open in IMG/M
3300012925\|Ga0137419_10371807	All Organisms → cellular organisms → Bacteria	1111	Open in IMG/M
3300012930\|Ga0137407_12237118	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	522	Open in IMG/M
3300012944\|Ga0137410_10708881	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	839	Open in IMG/M
3300012948\|Ga0126375_11507610	All Organisms → cellular organisms → Bacteria	575	Open in IMG/M
3300014969\|Ga0157376_10479324	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Beijerinckia → unclassified Beijerinckia → Beijerinckia sp. 28-YEA-48	1219	Open in IMG/M
3300015242\|Ga0137412_11068415	All Organisms → cellular organisms → Bacteria	573	Open in IMG/M
3300015371\|Ga0132258_10825580	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2338	Open in IMG/M
3300015372\|Ga0132256_102471493	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Beijerinckia → unclassified Beijerinckia → Beijerinckia sp. 28-YEA-48	621	Open in IMG/M
3300015373\|Ga0132257_100408976	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Beijerinckia → unclassified Beijerinckia → Beijerinckia sp. 28-YEA-48	1651	Open in IMG/M
3300015373\|Ga0132257_102587648	All Organisms → cellular organisms → Bacteria	660	Open in IMG/M
3300016270\|Ga0182036_11492059	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	567	Open in IMG/M
3300016371\|Ga0182034_10945822	All Organisms → cellular organisms → Bacteria	742	Open in IMG/M
3300016387\|Ga0182040_10022962	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3503	Open in IMG/M
3300016404\|Ga0182037_10084382	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2241	Open in IMG/M
3300016422\|Ga0182039_11006827	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	747	Open in IMG/M
3300016422\|Ga0182039_11475092	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	619	Open in IMG/M
3300018054\|Ga0184621_10269769	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Beijerinckia → unclassified Beijerinckia → Beijerinckia sp. 28-YEA-48	603	Open in IMG/M
3300018466\|Ga0190268_11856210	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Beijerinckia → unclassified Beijerinckia → Beijerinckia sp. 28-YEA-48	546	Open in IMG/M
3300018469\|Ga0190270_10084389	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Beijerinckia → unclassified Beijerinckia → Beijerinckia sp. 28-YEA-48	2370	Open in IMG/M
3300018482\|Ga0066669_12179608	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Beijerinckia → unclassified Beijerinckia → Beijerinckia sp. 28-YEA-48	525	Open in IMG/M
3300020581\|Ga0210399_11319640	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	567	Open in IMG/M
3300021170\|Ga0210400_10407386	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1122	Open in IMG/M
3300021170\|Ga0210400_10465174	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1044	Open in IMG/M
3300021170\|Ga0210400_11329034	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	575	Open in IMG/M
3300021171\|Ga0210405_10692724	All Organisms → cellular organisms → Bacteria	788	Open in IMG/M
3300021180\|Ga0210396_10530314	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1028	Open in IMG/M
3300021403\|Ga0210397_10773736	Not Available	740	Open in IMG/M
3300021433\|Ga0210391_11322300	All Organisms → cellular organisms → Bacteria	556	Open in IMG/M
3300021479\|Ga0210410_11393349	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	594	Open in IMG/M
3300021560\|Ga0126371_10191445	All Organisms → cellular organisms → Bacteria → Proteobacteria	2136	Open in IMG/M
3300022694\|Ga0222623_10367052	All Organisms → cellular organisms → Bacteria	549	Open in IMG/M
3300026295\|Ga0209234_1302864	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	513	Open in IMG/M
3300026314\|Ga0209268_1056524	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1229	Open in IMG/M
3300026481\|Ga0257155_1048413	All Organisms → cellular organisms → Bacteria	661	Open in IMG/M
3300026508\|Ga0257161_1024409	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1168	Open in IMG/M
3300026514\|Ga0257168_1083971	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	706	Open in IMG/M
3300026542\|Ga0209805_1326758	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	582	Open in IMG/M
3300027388\|Ga0208995_1088150	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	541	Open in IMG/M
3300027646\|Ga0209466_1018650	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1449	Open in IMG/M
3300027646\|Ga0209466_1027808	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1164	Open in IMG/M
3300027680\|Ga0207826_1222744	All Organisms → cellular organisms → Bacteria	505	Open in IMG/M
3300027701\|Ga0209447_10202827	All Organisms → cellular organisms → Bacteria	542	Open in IMG/M
3300027826\|Ga0209060_10549934	Not Available	523	Open in IMG/M
3300027895\|Ga0209624_10992113	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → unclassified Acetobacteraceae → Acetobacteraceae bacterium	545	Open in IMG/M
3300027909\|Ga0209382_11180192	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Beijerinckia → unclassified Beijerinckia → Beijerinckia sp. 28-YEA-48	784	Open in IMG/M
3300028799\|Ga0307284_10432264	All Organisms → cellular organisms → Bacteria	538	Open in IMG/M
3300028906\|Ga0308309_10681440	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	893	Open in IMG/M
3300030618\|Ga0311354_10375824	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Beijerinckia → unclassified Beijerinckia → Beijerinckia sp. 28-YEA-48	1442	Open in IMG/M
3300031544\|Ga0318534_10062188	All Organisms → cellular organisms → Bacteria	2104	Open in IMG/M
3300031544\|Ga0318534_10527147	All Organisms → cellular organisms → Bacteria	674	Open in IMG/M
3300031545\|Ga0318541_10004843	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Chelativorans → unclassified Chelativorans → Chelativorans sp. J32	5593	Open in IMG/M
3300031561\|Ga0318528_10542252	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	624	Open in IMG/M
3300031561\|Ga0318528_10663557	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	558	Open in IMG/M
3300031681\|Ga0318572_10582518	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	667	Open in IMG/M
3300031724\|Ga0318500_10208475	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	938	Open in IMG/M
3300031744\|Ga0306918_10933405	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	675	Open in IMG/M
3300031744\|Ga0306918_11097313	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	616	Open in IMG/M
3300031764\|Ga0318535_10049068	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Beijerinckia → unclassified Beijerinckia → Beijerinckia sp. 28-YEA-48	1756	Open in IMG/M
3300031769\|Ga0318526_10347331	All Organisms → cellular organisms → Bacteria	607	Open in IMG/M
3300031799\|Ga0318565_10272088	All Organisms → cellular organisms → Bacteria	823	Open in IMG/M
3300031835\|Ga0318517_10294993	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	732	Open in IMG/M
3300031835\|Ga0318517_10386164	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	632	Open in IMG/M
3300031890\|Ga0306925_10359972	All Organisms → cellular organisms → Bacteria	1562	Open in IMG/M
3300031910\|Ga0306923_10466021	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1432	Open in IMG/M
3300031910\|Ga0306923_12168066	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	558	Open in IMG/M
3300031945\|Ga0310913_10512219	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	852	Open in IMG/M
3300031947\|Ga0310909_10900396	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	727	Open in IMG/M
3300031959\|Ga0318530_10283615	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	684	Open in IMG/M
3300032068\|Ga0318553_10146919	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1219	Open in IMG/M
3300032074\|Ga0308173_12124730	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	530	Open in IMG/M
3300032160\|Ga0311301_10554914	All Organisms → cellular organisms → Bacteria	1677	Open in IMG/M
3300032180\|Ga0307471_102359799	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	672	Open in IMG/M
3300032782\|Ga0335082_10944527	All Organisms → cellular organisms → Bacteria	726	Open in IMG/M
3300033289\|Ga0310914_10277683	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1509	Open in IMG/M
3300033289\|Ga0310914_11401420	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	602	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	93.10%
Host-Associated	Host-Associated	6.90%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	88.79%
Plants	Host-Associated → Plants	6.90%
Aquatic	Environmental → Aquatic	4.31%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	87.93%
Rhizosphere	Host-Associated → Plants → Rhizosphere	4.31%
Sediment	Environmental → Aquatic → Sediment	3.45%
Rhizoplane	Host-Associated → Plants → Rhizoplane	2.59%
Freshwater	Environmental → Aquatic → Freshwater	0.86%
Peat	Environmental → Terrestrial → Peat	0.86%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	70.69%
Loam	Environmental → Terrestrial → Soil → Loam	16.38%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.45%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	3.45%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.59%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.86%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.86%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.86%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.86%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	36.21%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	26.72%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	14.66%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	6.90%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.45%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	3.45%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.59%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.72%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	0.86%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.86%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.86%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.86%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.86%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	25.86%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	10.34%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	10.34%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	9.48%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	7.76%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	5.17%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.45%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	2.59%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	2.59%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.59%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.72%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	1.72%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.72%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	1.72%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.72%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.86%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.86%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.86%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.86%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.86%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.86%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.86%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.86%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.86%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.86%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	0.86%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.86%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.86%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300004268	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 MoBio	Environmental	Open in IMG/M
3300004281	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 30 MoBio	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005555	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141	Environmental	Open in IMG/M
3300005586	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006047	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013	Environmental	Open in IMG/M
3300006057	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2012	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006604	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLMB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006969	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3	Host-Associated	Open in IMG/M
3300009525	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_7_NC metaG	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010041	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot104A	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010337	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09082015	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012908	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S089-202R-1	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015242	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300018054	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_b1	Environmental	Open in IMG/M
3300018466	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 T	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022694	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_coex	Environmental	Open in IMG/M
3300026295	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_20cm (SPAdes)	Environmental	Open in IMG/M
3300026314	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_143 (SPAdes)	Environmental	Open in IMG/M
3300026481	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-19-A	Environmental	Open in IMG/M
3300026508	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-01-A	Environmental	Open in IMG/M
3300026514	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-13-B	Environmental	Open in IMG/M
3300026542	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148 (SPAdes)	Environmental	Open in IMG/M
3300027388	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM2_O2 (SPAdes)	Environmental	Open in IMG/M
3300027646	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 30 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027680	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 80 (SPAdes)	Environmental	Open in IMG/M
3300027701	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027826	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027895	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)	Environmental	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028799	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_123	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300030618	II_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031724	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031764	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f27	Environmental	Open in IMG/M
3300031769	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f24	Environmental	Open in IMG/M
3300031799	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f21	Environmental	Open in IMG/M
3300031835	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f21	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031959	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f24	Environmental	Open in IMG/M
3300032068	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f21	Environmental	Open in IMG/M
3300032074	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R1	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032782	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.1	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.43
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.43
Powered by PDBe Molstar

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F079032

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0066398_101879051	3300004268	Tropical Forest Soil	YDAQMPSFSADGAWDPKAIEVIRHSLKDLGILPQVPDAKAIYNGKFVPVKF*
Ga0066397_100143922	3300004281	Tropical Forest Soil	SDGAWSPVAIDVIRHSLKELGILPVVPEAKTIYNDKFVPVKF*
Ga0066388_1026219542	3300005332	Tropical Forest Soil	AWSPAAIDVIRHSLKELGILASVPEAKAIYNDKFVPVKF*
Ga0066388_1032330721	3300005332	Tropical Forest Soil	TDGAWDPASIEVIRNSLKELEILDFVPEAKTIYNDQFVPVKF*
Ga0066388_1059500342	3300005332	Tropical Forest Soil	AWNPAAIEVIRHSLKELGILPVVPEAKTIYNDQFVPVRF*
Ga0066388_1077344751	3300005332	Tropical Forest Soil	QIGSFSSDGAWDPVAIDVIRNSLKELGILDFVPEAKTIYNDKFVPVQI*
Ga0066692_100807633	3300005555	Soil	GAWNPAAIDVIRHSLKELGILSVEPEAKAISNDQFVPVRF*
Ga0066691_104791762	3300005586	Soil	GFSGDGAWSPAAIDVIRHSLKELGILGAVPEAKAIYNDQFVPVRF*
Ga0066903_1015062591	3300005764	Tropical Forest Soil	PAAIDVIRHSLKELGILGAVPEAKAIYNDQFVPVRF*
Ga0066903_1042252061	3300005764	Tropical Forest Soil	AIDVIRNSLKELGILDFVPEAKTIYNDKFVPVKI*
Ga0066903_1080273732	3300005764	Tropical Forest Soil	DGAWDPKAIEVIRHSLKELGILPEVPDAKALYNDKFVPVKF*
Ga0070766_105100032	3300005921	Soil	SRAMDVIASSLKELGILPVVPDAKALYTDKFVPVKF*
Ga0066652_1010815912	3300006046	Soil	KVYDTQIGSFSADGAWDMQSIDVIRNSLKELGILDFIPEAKVIYNDKFVPVKF*
Ga0075024_1001984702	3300006047	Watersheds	DPVAIDVIRKSLKELGILDAVPEAKTIYNDKFVPVKLAQ*
Ga0075026_1006404712	3300006057	Watersheds	DGAWDPVAIDVIRNSLKELGILDTVPEAKTIYNDKFVPVKLAQ*
Ga0070712_1004528381	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	WSAAAIDVIRRSLKELGTLDHVPDANTIHNDKFVPVKF*
Ga0070712_1014160032	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	DGAWDPAAIDVIRHSLKELGILLAVPDAKDLYTNKFVPVKF*
Ga0070765_1022856602	3300006176	Soil	GAWDPAAIDVIRNSLKDLGILDTVPAAKTLYNDQFVPVKF*
Ga0074060_111080752	3300006604	Soil	FSADGAWDMQSIDVIRNSLKDLGILDFVPEAKVIYNDKFVPVKF*
Ga0066660_111227252	3300006800	Soil	PAAIDVIRHSLKELGILPTVPDAKAIYNDTFVPVKF*
Ga0075428_1023741042	3300006844	Populus Rhizosphere	AQVNGFSRDGAWDPVAIEVIRKSLKDLGILDSLPDARTIYNDKFVPVKL*
Ga0075419_114417672	3300006969	Populus Rhizosphere	EAQMAGFSPDGAWSPVAIDVIRHSLKELGILASVPEAKAIYNDKFVPVKF*
Ga0116220_104184491	3300009525	Peatlands Soil	AVDVIRSSLKELGILPVVPEANQLTTDKFVPVRF*
Ga0126374_104751982	3300009792	Tropical Forest Soil	SLDGAWSPAAIDVIRHSLKELGILGAVPEAKAIYNDQFAPVRF*
Ga0126312_114299371	3300010041	Serpentine Soil	TQIGSFSTDGAWDPQAIEVIRHSLKDLGILDFVPEAKTIYNDKFVPVKL*
Ga0126380_102194651	3300010043	Tropical Forest Soil	DVAAIDVIRQSLNELGILNRVPEPHELYTDKFVPVRF*
Ga0126384_107093992	3300010046	Tropical Forest Soil	DVAAIDVIRLSLNELGILNRVPEPHELYTDKFVPVRF*
Ga0134062_104767612	3300010337	Grasslands Soil	AGFSGDGAWSPAAIDVIRHSLKELGILGAVPEAKAIYNDQFVPVRF*
Ga0126376_109560032	3300010359	Tropical Forest Soil	DAQMGGFSSDGAWDPKAIEVIRHSLKDLGILPEVPDAKAIYTDKFVPVRF*
Ga0126376_111885032	3300010359	Tropical Forest Soil	PVAIDVIRNSLKELGILDFVPEAKTIYNDKFVPVQI*
Ga0126372_104050902	3300010360	Tropical Forest Soil	AIDVIRHSLKELGILGAVPEAKAIYNDQFVPVRF*
Ga0126377_108182581	3300010362	Tropical Forest Soil	NGAWDPVAIDVIRNSLKELGILDFIPEAKAIYNDKFVPVNL*
Ga0126381_1042691751	3300010376	Tropical Forest Soil	GAWDMAAIDVIRHSLNELGILSRVPEAHEIYNDQFVPVTF*
Ga0126383_105167811	3300010398	Tropical Forest Soil	SPAAIDVIRHSLKELGILGAVPEAKAIYNDQFVPVRF*
Ga0126383_107320772	3300010398	Tropical Forest Soil	VSIDVIRNSLKELGILDFIPEAKAIYNDKFVPVHL*
Ga0137382_106140102	3300012200	Vadose Zone Soil	ASLDVIRNSLKELEILDFVPEAKTIYNDAFVPVKF*
Ga0137362_103731022	3300012205	Vadose Zone Soil	FSVDGAWSPAAIDVIRHSLKELGILAAVPEAKAIYNDQFVPVRF*
Ga0137362_116012772	3300012205	Vadose Zone Soil	WDPEAIDVIRSSLKELGILPAIPDAKALYTDRFVPVRF*
Ga0137378_105228151	3300012210	Vadose Zone Soil	IGGFSTDGAWDMASLDVIRNSLKELEILDFVPEAKTIYNDAFVPVKF*
Ga0157286_104294061	3300012908	Soil	WDAASIDVIRKSLVDLGILDKVPDAKTIYNDQFVPVKF*
Ga0137395_100927331	3300012917	Vadose Zone Soil	IAGFSVDGAWSPAAIDVIRHSLKELGILSAVPEAKAIYNDQFVPVRF*
Ga0137419_103718072	3300012925	Vadose Zone Soil	DPEAIDVIRSSLKELGILPAVPDAKALYTDRFVPVRF*
Ga0137407_122371181	3300012930	Vadose Zone Soil	GAWSPAAIDVIRHSLKELGILSAVPEAKAIYNDQFVPVRF*
Ga0137410_107088811	3300012944	Vadose Zone Soil	VYDTQIGSFSADGAWDMQSIDVIRNSLKDLGILDFVPEAKTIYNDKFVPVKF*
Ga0126375_115076102	3300012948	Tropical Forest Soil	PVAIDVIRNSLKDLGILDFIPEAKAIYNDKFVPVNL*
Ga0157376_104793243	3300014969	Miscanthus Rhizosphere	DTQIGSFSTDGAWDPEAIDVIRNSLKSLGILDFTPDAKVIYNDKFVPVKL*
Ga0137412_110684152	3300015242	Vadose Zone Soil	AIDVIRSSLKELGILPAIPEAKALYTDRFVPVRF*
Ga0132258_108255801	3300015371	Arabidopsis Rhizosphere	PKAIEVIRHSLKELGILPEVPEAKALYNDKFVPVKF*
Ga0132256_1024714932	3300015372	Arabidopsis Rhizosphere	DAEVNGFSRDGSWDPVAIEVIRKSLKDLGILDSLPDARTIYNDKFVPVKL*
Ga0132257_1004089762	3300015373	Arabidopsis Rhizosphere	SPDGAWSPVAIDVIRHSLKELGILATVPEAKAIYNDKFVPVKF*
Ga0132257_1025876482	3300015373	Arabidopsis Rhizosphere	IGDFSTDGAWDPQSIDVIRNSLKDLGILDVVPDAKVIYNDKFVPVKF*
Ga0182036_114920591	3300016270	Soil	AQIAGFSLDGTWSPAAIDVIRHSLKELGILGAVPEAKAIYNDQFVPVRF
Ga0182034_109458221	3300016371	Soil	GAWDPEAIDVIRGSLKELGILPTVPEAKVLYNDKFVPVRF
Ga0182040_100229621	3300016387	Soil	AAIDVIRHSLKELGILAAVPEAKAIYNDQFVPVRF
Ga0182037_100843822	3300016404	Soil	SADGAWDPEAIDVIRASLKELGTLPTVPDAKAIYNDKFVPVKLQ
Ga0182039_110068272	3300016422	Soil	DFSADGAWDPQAIDTIRNSLKDLGILNFVPEAKMIYNDKFVPVKF
Ga0182039_114750921	3300016422	Soil	AQMTGFSADGAWDPKAIEVIRFSLKELGILPNVPDAKALYNDKFVPVKF
Ga0184621_102697691	3300018054	Groundwater Sediment	TQMAHFSIDGAWDPVAIDVIRNSLKELGILDFIPEAKVIYNDKFVPVNL
Ga0190268_118562101	3300018466	Soil	NGFSSDGAWDPVAIEVIRKSLKDLGILDSLPDARTIYNDKFVPVKF
Ga0190270_100843894	3300018469	Soil	ESIEVIRRSLKDLGILDSLPDARTIYNDKFVPVKF
Ga0066669_121796081	3300018482	Grasslands Soil	IANFSTDGAWDPVAIDVIRNSLKELGILDFIPEAKVIYNDKFVPVNL
Ga0210399_113196401	3300020581	Soil	AQIGGFSNDGAFDPTAIDVIRRSLKELGILPAVPEAKSIYSDKFVPVRF
Ga0210400_104073862	3300021170	Soil	FSVDGAWSPAAIDVIRHSLKELGILGAVPEAKAIYNDQFVPVRF
Ga0210400_104651741	3300021170	Soil	IAGFSADGAWDPKAIEVIRHSLKDLGILPSVPDAKAIYNDKFVPVKF
Ga0210400_113290341	3300021170	Soil	AWDPAAIDVIRNSLKDLGILDTVPDAKTIYNDKFVPVKF
Ga0210405_106927241	3300021171	Soil	EAIDVIRASLKELGILPAIPDAKALYTDKFVPVRF
Ga0210396_105303142	3300021180	Soil	SDGAWDPAAIDVIRNSLKDLGILDTVPAAKTLYNDQFVPVKF
Ga0210397_107737361	3300021403	Soil	EMPGFSIDGTWDPEVIDVIRASLKELDILPKIPDAKALYTDAFVPVRF
Ga0210391_113223002	3300021433	Soil	EAIDVIRSSLKELGILPTVPDAKALYNDKFVPVRF
Ga0210410_113933492	3300021479	Soil	SFSSDGAWDPVAIDAIRNSLKELGILDSVPDAKTIYNDKFVPVKF
Ga0126371_101914451	3300021560	Tropical Forest Soil	VSIDVIRKSLKELGILDTIPDAKSIYNDKFVPVKF
Ga0222623_103670522	3300022694	Groundwater Sediment	PAAIEVIRKSLKELGILDSLPDARTIYNDQFVPVKL
Ga0209234_13028642	3300026295	Grasslands Soil	DGAWSPAAIDVIRHSLKELGILGAVPEAKAIYNDQFVPVRF
Ga0209268_10565242	3300026314	Soil	ISGFSADGAWNPAAIDVIRHSLKELGILSVVPEAKAISNDQFVPVRF
Ga0257155_10484132	3300026481	Soil	WDPEAIDVIRSSLKELGILPTIPDAKALYTDRFVPVRF
Ga0257161_10244091	3300026508	Soil	AAIDVIRHSLKELGILGAVPEAKAIYNDQFVPVRF
Ga0257168_10839712	3300026514	Soil	WSPAAIDVIRHSLKELGILGAVPEAKAIYNDQFVPVRF
Ga0209805_13267582	3300026542	Soil	VDGTWDAQSIDVIRNSLKDLGILNFVPEAKTIYNDKFVPVRF
Ga0208995_10881502	3300027388	Forest Soil	AGCSPDGAWSPVAIDVIRHSLKELGILNTVPDAKTIYNDAFVPVTF
Ga0209466_10186501	3300027646	Tropical Forest Soil	AQIAGFSVDGAWSPAAIDVIRHSLKELGILAAVPEAKAIYNDQFVPVRF
Ga0209466_10278082	3300027646	Tropical Forest Soil	SDGAWSPVAIDVIRHSLKELGILPVVPEAKTIYNDKFVPVKF
Ga0207826_12227441	3300027680	Tropical Forest Soil	FSADGAWDGKAIEVIRQSLKELGILPEVPDAKDLYNDQFVPVTF
Ga0209447_102028272	3300027701	Bog Forest Soil	ADGAWDPEAIDVIRASLKELGTLPTVPDAKALYTDKFVPVRF
Ga0209060_105499341	3300027826	Surface Soil	WDPVSIDAILKSLKDLGIVETIPDAKSIYNDKFVPVKF
Ga0209624_109921131	3300027895	Forest Soil	MSSATSTDGAWDKEAIDVIRASLKDLGILPAVPDAKALYTDKFVPVRF
Ga0209382_111801922	3300027909	Populus Rhizosphere	SGDGAWDPVAIEVIRKSLKDLGILDSLPDARTIYNDKFVPVKL
Ga0307284_104322642	3300028799	Soil	SADGAWDMQSIDVIRNSLKDLGILDFVPEAKVIYNDKFVPVKF
Ga0308309_106814402	3300028906	Soil	STDGAWDPAAIDVIRNSLKDLGILDTVPEAKTIYNDKFVPVKF
Ga0311354_103758242	3300030618	Palsa	GGFSADGAWDPEAIDVIRASLKELGTLPTIPDAKMLYNDKFVPVRF
Ga0318534_100621882	3300031544	Soil	LAAIDVIRHSLKELGILAAVPEAKAIYNDQFVPVRF
Ga0318534_105271472	3300031544	Soil	PEAIDVIRASLKELGTLPTVPDAKAIYNDKFVPVKLQ
Ga0318541_100048435	3300031545	Soil	AWSPAAIDVIRHSLKELGILAAVPEAKAIYNDQFVPVRF
Ga0318528_105422522	3300031561	Soil	HGAWSPAAIDVIRHSLKELGILGAVPEAKAIYNDQFVPVRF
Ga0318528_106635572	3300031561	Soil	AWSPAAIDVIRHSLKELGILGAVPEAKAIYNDQFVPVRF
Ga0318572_105825181	3300031681	Soil	FSVDGAWSPAAIDVIRHSLKELGILAAVPEAKAIYNDQFVPVRF
Ga0318500_102084751	3300031724	Soil	GFSADGAWSPAAIDVIRHSLKELGILGAVPEAKAIYNDQFVPVRF
Ga0306918_109334051	3300031744	Soil	ADGTFNPAAIEVIRHSLKELGILNAVPEAKTIYNDKFVPVKY
Ga0306918_110973132	3300031744	Soil	PAAIDVIRHSLKELGILGAVPEAKAIYNDQFVPVRF
Ga0318535_100490682	3300031764	Soil	GFSVDGAWSPAAIDVIRHSLKELGILAAVPEAKAIYNDQFVPVRF
Ga0318526_103473312	3300031769	Soil	GAWDPEAIDVIRASLKELGTLPTVPDAKAIYNDKFVPVKLQ
Ga0318565_102720881	3300031799	Soil	PAAIDVIRHSLKELGILAAVPEAKAIYNDQFVPVRF
Ga0318517_102949932	3300031835	Soil	GFSLDGAWSPAAIDVIRHSLKELGILGAVPEAKAIYNDQFVPVRF
Ga0318517_103861642	3300031835	Soil	QIAGFSVDGAWSPAAIDVIRHSLKELGILGAVPEAKAIYNDQFVPVRF
Ga0306925_103599721	3300031890	Soil	WDSRAMNAIAASLKELGILPVVPDAKALYTDKFVPVKF
Ga0306923_104660211	3300031910	Soil	TQIGSFSSDGVWDPVAIDVIRNSLKELGILDHVPDAKSIYNDQFVPVKL
Ga0306923_121680661	3300031910	Soil	ADGAWDPQAIDVIRNSLKELGILNFVPEAKTIYNDKFVPVKF
Ga0310913_105122191	3300031945	Soil	FSSDGAWDPVAIDVIRNSLKELGILDHVPDAKSIYNDQFVPVKL
Ga0310909_109003961	3300031947	Soil	QIGDFSADGAWDPQAIDVIRNSLKDLGILNFVPEAKTIYNDKFVPVKF
Ga0318530_102836152	3300031959	Soil	AAAIDVIRHSLKELGILGAVPEAKAIYNDQFVPVRF
Ga0318553_101469192	3300032068	Soil	AWNPAAIDVIRHSLKELGILGAVPEAKAIYNDQFVPVRF
Ga0308173_121247301	3300032074	Soil	VYDTQIGSFSTDGAWDPEAIDVIRNSLKSLGILDFTPDAKTIYNDKFVPVKL
Ga0311301_105549142	3300032160	Peatlands Soil	DPEAIDVIRSSLKELGILPTIPDAKALYTDKFVPVRF
Ga0307471_1023597992	3300032180	Hardwood Forest Soil	KAIEVIRHSLKDLGILPDVPDAKAIYNDKFVPVKF
Ga0335082_109445272	3300032782	Soil	LSAFSTDGSFDPKAIEVIRRSLKELGILDFEPDPKTLYNDTFVPVKF
Ga0310914_102776831	3300033289	Soil	GSFSSDGVWDPVAIDVIRNSLKELGILDHVPDAKSIYNDQFVPVKL
Ga0310914_114014202	3300033289	Soil	VAIDVIRHSLKELGILNAVPDARTIYNDRFVPVKF

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign