Metagenome / Metatranscriptome Family F079025

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F079025
Family Type	Metagenome / Metatranscriptome
Number of Sequences	116
Average Sequence Length	57 residues
Representative Sequence	LNVRRFDDRWISAVSGDVSYELDRQNGNLTYAGSAMKDGIATTIIGAGQCTLATGPAR
Number of Associated Samples	89
Number of Associated Scaffolds	116

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	1.72 %
% of genes near scaffold ends (potentially truncated)	98.28 %
% of genes from short scaffolds (< 2000 bps)	95.69 %
Associated GOLD sequencing projects	83
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (62.931 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (29.310 % of family members)
Environment Ontology (ENVO)	Unclassified (40.517 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (49.138 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 46.55% Coil/Unstructured: 53.45%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 116 Family Scaffolds
PF00106	adh_short	9.48
PF04055	Radical_SAM	8.62
PF00571	CBS	3.45
PF13936	HTH_38	2.59
PF03401	TctC	0.86
PF00072	Response_reg	0.86
PF06500	FrsA-like	0.86
PF07883	Cupin_2	0.86
PF00313	CSD	0.86
PF13561	adh_short_C2	0.86
PF04392	ABC_sub_bind	0.86
PF13683	rve_3	0.86
PF00578	AhpC-TSA	0.86

COG ID	Name	Functional Category	% Frequency in 116 Family Scaffolds
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	0.86
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	0.86

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	62.93 %
Unclassified	root	N/A	37.07 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	62.93 %
Unclassified	root	N/A	37.07 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	62.93 %
Unclassified	root	N/A	37.07 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	57.76 %
Unclassified	root	N/A	37.07 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	53.45 %
Unclassified	root	N/A	37.07 %

Name	Rank	Taxonomy	Distribution
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	47.41 %
Unclassified	root	N/A	37.07 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.86 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	47.41 %
Unclassified	root	N/A	37.07 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.86 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002910\|JGI25615J43890_1073565	All Organisms → cellular organisms → Bacteria → Proteobacteria	591	Open in IMG/M
3300002914\|JGI25617J43924_10051188	All Organisms → cellular organisms → Bacteria → Proteobacteria	1504	Open in IMG/M
3300004463\|Ga0063356_101829806	Not Available	913	Open in IMG/M
3300004633\|Ga0066395_10216133	Not Available	1011	Open in IMG/M
3300005167\|Ga0066672_10102203	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1750	Open in IMG/M
3300005180\|Ga0066685_11097286	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	520	Open in IMG/M
3300005181\|Ga0066678_10344002	Not Available	983	Open in IMG/M
3300005332\|Ga0066388_101874249	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1069	Open in IMG/M
3300005332\|Ga0066388_103075443	Not Available	852	Open in IMG/M
3300005332\|Ga0066388_103326579	Not Available	821	Open in IMG/M
3300005332\|Ga0066388_105357464	Not Available	650	Open in IMG/M
3300005332\|Ga0066388_105800500	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	624	Open in IMG/M
3300005332\|Ga0066388_106698100	Not Available	580	Open in IMG/M
3300005332\|Ga0066388_107286891	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	556	Open in IMG/M
3300005363\|Ga0008090_15320703	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	510	Open in IMG/M
3300005440\|Ga0070705_101944148	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	501	Open in IMG/M
3300005467\|Ga0070706_101929655	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	535	Open in IMG/M
3300005536\|Ga0070697_101718932	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	561	Open in IMG/M
3300005598\|Ga0066706_11483392	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	511	Open in IMG/M
3300005713\|Ga0066905_100634904	Not Available	908	Open in IMG/M
3300005713\|Ga0066905_101187893	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	681	Open in IMG/M
3300005764\|Ga0066903_103186565	Not Available	887	Open in IMG/M
3300005764\|Ga0066903_103624158	Not Available	831	Open in IMG/M
3300005764\|Ga0066903_103702154	Not Available	822	Open in IMG/M
3300005764\|Ga0066903_105121914	Not Available	694	Open in IMG/M
3300005764\|Ga0066903_106104924	Not Available	630	Open in IMG/M
3300005764\|Ga0066903_106860974	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	591	Open in IMG/M
3300005764\|Ga0066903_108155231	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	536	Open in IMG/M
3300005764\|Ga0066903_108259261	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	532	Open in IMG/M
3300006175\|Ga0070712_100590150	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	939	Open in IMG/M
3300006176\|Ga0070765_101023152	Not Available	781	Open in IMG/M
3300006847\|Ga0075431_101872582	All Organisms → cellular organisms → Bacteria	556	Open in IMG/M
3300007076\|Ga0075435_100283853	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1413	Open in IMG/M
3300007788\|Ga0099795_10138704	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	987	Open in IMG/M
3300009038\|Ga0099829_10173948	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1730	Open in IMG/M
3300009792\|Ga0126374_10045197	All Organisms → cellular organisms → Bacteria	2192	Open in IMG/M
3300009792\|Ga0126374_10482415	Not Available	889	Open in IMG/M
3300009792\|Ga0126374_10514736	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	866	Open in IMG/M
3300010359\|Ga0126376_11615675	Not Available	681	Open in IMG/M
3300010366\|Ga0126379_11316776	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	828	Open in IMG/M
3300010366\|Ga0126379_11723891	Not Available	731	Open in IMG/M
3300010366\|Ga0126379_13130245	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	554	Open in IMG/M
3300010398\|Ga0126383_12221073	Not Available	635	Open in IMG/M
3300012189\|Ga0137388_11748852	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	555	Open in IMG/M
3300012198\|Ga0137364_10097880	Not Available	2061	Open in IMG/M
3300012198\|Ga0137364_11102302	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	597	Open in IMG/M
3300012205\|Ga0137362_10503958	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1047	Open in IMG/M
3300012209\|Ga0137379_10873778	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	804	Open in IMG/M
3300012357\|Ga0137384_10164297	All Organisms → cellular organisms → Bacteria	1858	Open in IMG/M
3300012361\|Ga0137360_10637684	Not Available	913	Open in IMG/M
3300012362\|Ga0137361_10791599	Not Available	863	Open in IMG/M
3300012923\|Ga0137359_11452420	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	574	Open in IMG/M
3300012925\|Ga0137419_11172406	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	642	Open in IMG/M
3300012971\|Ga0126369_12688853	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	582	Open in IMG/M
3300012986\|Ga0164304_11552418	All Organisms → cellular organisms → Bacteria	550	Open in IMG/M
3300012987\|Ga0164307_11396295	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	589	Open in IMG/M
3300013306\|Ga0163162_13377036	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	510	Open in IMG/M
3300016270\|Ga0182036_10914217	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	720	Open in IMG/M
3300016270\|Ga0182036_11666880	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	538	Open in IMG/M
3300016294\|Ga0182041_10875172	Not Available	806	Open in IMG/M
3300016341\|Ga0182035_10819612	Not Available	817	Open in IMG/M
3300016341\|Ga0182035_11126062	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	699	Open in IMG/M
3300016341\|Ga0182035_11886037	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	542	Open in IMG/M
3300016357\|Ga0182032_11428648	Not Available	599	Open in IMG/M
3300018433\|Ga0066667_11747321	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	560	Open in IMG/M
3300021178\|Ga0210408_10063946	All Organisms → cellular organisms → Bacteria → Proteobacteria	2875	Open in IMG/M
3300021361\|Ga0213872_10058026	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1752	Open in IMG/M
3300021444\|Ga0213878_10030135	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2049	Open in IMG/M
3300021478\|Ga0210402_10936057	All Organisms → cellular organisms → Bacteria → Proteobacteria	793	Open in IMG/M
3300021560\|Ga0126371_11765120	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	741	Open in IMG/M
3300025915\|Ga0207693_10566206	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	886	Open in IMG/M
3300025928\|Ga0207700_10211583	Not Available	1639	Open in IMG/M
3300026538\|Ga0209056_10561899	All Organisms → cellular organisms → Bacteria	579	Open in IMG/M
3300027846\|Ga0209180_10147805	Not Available	1353	Open in IMG/M
3300027903\|Ga0209488_10317796	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1161	Open in IMG/M
3300031543\|Ga0318516_10797304	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	534	Open in IMG/M
3300031545\|Ga0318541_10842503	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	511	Open in IMG/M
3300031561\|Ga0318528_10723638	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	532	Open in IMG/M
3300031573\|Ga0310915_10454182	Not Available	910	Open in IMG/M
3300031668\|Ga0318542_10201408	Not Available	1004	Open in IMG/M
3300031668\|Ga0318542_10641858	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	554	Open in IMG/M
3300031719\|Ga0306917_10653809	Not Available	826	Open in IMG/M
3300031724\|Ga0318500_10518339	Not Available	600	Open in IMG/M
3300031736\|Ga0318501_10398543	Not Available	743	Open in IMG/M
3300031744\|Ga0306918_10227961	Not Available	1414	Open in IMG/M
3300031777\|Ga0318543_10078005	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1398	Open in IMG/M
3300031778\|Ga0318498_10265255	Not Available	773	Open in IMG/M
3300031779\|Ga0318566_10499885	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	595	Open in IMG/M
3300031781\|Ga0318547_10950857	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	537	Open in IMG/M
3300031792\|Ga0318529_10363663	Not Available	674	Open in IMG/M
3300031793\|Ga0318548_10047900	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1942	Open in IMG/M
3300031795\|Ga0318557_10554387	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	527	Open in IMG/M
3300031833\|Ga0310917_10431015	Not Available	897	Open in IMG/M
3300031833\|Ga0310917_11069720	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	539	Open in IMG/M
3300031846\|Ga0318512_10124083	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1230	Open in IMG/M
3300031897\|Ga0318520_11074852	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	509	Open in IMG/M
3300031912\|Ga0306921_12272547	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	569	Open in IMG/M
3300031941\|Ga0310912_11024748	Not Available	632	Open in IMG/M
3300031946\|Ga0310910_10092992	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2224	Open in IMG/M
3300031946\|Ga0310910_10425733	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1052	Open in IMG/M
3300031947\|Ga0310909_11634168	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	510	Open in IMG/M
3300031954\|Ga0306926_11628737	Not Available	739	Open in IMG/M
3300031954\|Ga0306926_11762809	All Organisms → cellular organisms → Bacteria → Proteobacteria	704	Open in IMG/M
3300031959\|Ga0318530_10287113	Not Available	679	Open in IMG/M
3300032001\|Ga0306922_12088002	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	549	Open in IMG/M
3300032001\|Ga0306922_12106098	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	546	Open in IMG/M
3300032042\|Ga0318545_10244911	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	643	Open in IMG/M
3300032044\|Ga0318558_10226683	Not Available	916	Open in IMG/M
3300032051\|Ga0318532_10244234	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	637	Open in IMG/M
3300032052\|Ga0318506_10403777	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	606	Open in IMG/M
3300032059\|Ga0318533_10500674	Not Available	890	Open in IMG/M
3300032060\|Ga0318505_10303479	Not Available	753	Open in IMG/M
3300032068\|Ga0318553_10265241	Not Available	897	Open in IMG/M
3300032180\|Ga0307471_103617233	All Organisms → cellular organisms → Bacteria	547	Open in IMG/M
3300032261\|Ga0306920_102565953	Not Available	699	Open in IMG/M
3300033290\|Ga0318519_10957892	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	530	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	95.69%
Host-Associated	Host-Associated	4.31%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	95.69%
Plants	Host-Associated → Plants	4.31%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	95.69%
Rhizosphere	Host-Associated → Plants → Rhizosphere	2.59%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.72%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	74.14%
Loam	Environmental → Terrestrial → Soil → Loam	21.55%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	2.59%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.72%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	43.10%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	23.28%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	16.38%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	6.90%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.17%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	2.59%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.72%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	0.86%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	29.31%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	15.52%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	12.93%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	12.07%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	8.62%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	5.17%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	4.31%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.59%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.72%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.72%
Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Bulk Soil	0.86%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.86%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.86%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.86%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.86%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.86%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	0.86%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002910	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_80cm	Environmental	Open in IMG/M
3300002914	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental	Open in IMG/M
3300005180	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134	Environmental	Open in IMG/M
3300005181	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005363	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005598	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300007788	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021361	Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2	Host-Associated	Open in IMG/M
3300021444	Vellozia epidendroides bulk soil microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - BS_R02	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026538	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 (SPAdes)	Environmental	Open in IMG/M
3300027846	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031724	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20	Environmental	Open in IMG/M
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031777	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f24	Environmental	Open in IMG/M
3300031778	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f24	Environmental	Open in IMG/M
3300031779	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f22	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031792	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f23	Environmental	Open in IMG/M
3300031793	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f21	Environmental	Open in IMG/M
3300031795	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f19	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031846	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f19	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300031959	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f24	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032042	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f26	Environmental	Open in IMG/M
3300032044	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f20	Environmental	Open in IMG/M
3300032051	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f26	Environmental	Open in IMG/M
3300032052	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f19	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032060	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f18	Environmental	Open in IMG/M
3300032068	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f21	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI25615J43890_10735652	3300002910	Grasslands Soil	RRFDDRWISAVSGDVSYELDRQNGNLSYAGSAMKDGIATTIIGAGQCTLATGPAR*
JGI25617J43924_100511881	3300002914	Grasslands Soil	VTLADGKKLNVRRFDDRWISAVSGDVSYELDRQNGNLTYAGSAMKDGIATTIIGAGQCTLATGPAR*
Ga0063356_1018298061	3300004463	Arabidopsis Thaliana Rhizosphere	GKKLNVRRFDDRWISAVSGDVSYELDRQNGNLTYAGSAMKDGIATTIIGAGQCTLATSPAR*
Ga0066395_102161332	3300004633	Tropical Forest Soil	ERWISAVSGDVSYELDRQNGNLTYAGSTMKDGIATTIIGAGQCTLAPGPAR*
Ga0066672_101022032	3300005167	Soil	FDDRWISAVSGDVSYEFDRQNGNLTYAGSAMKDSIATTIIGAGQCTLATGPAR*
Ga0066685_110972861	3300005180	Soil	NVGRFDDRWISAVSGDVSYELDRQSGNLAYAGSTMKDGIATTIIGAGRCTVAAAPAR*
Ga0066678_103440021	3300005181	Soil	IVTLADGKKLNVRRFDDRWISAVSGDVSYELDRQNGNLTYAGSAMKDGIATTIIGAGQCTLATSPAR*
Ga0066388_1018742493	3300005332	Tropical Forest Soil	NVRRFDDRWISAVSGDVSYELDRQNGNLTYAGSTMKDGIATTIIGAGQCTPAALPAR*
Ga0066388_1030754431	3300005332	Tropical Forest Soil	RWISAVSGDVSYELDRQNGNLTYAGSTMKDGIATTIIGAGQCTLATAPAR*
Ga0066388_1033265791	3300005332	Tropical Forest Soil	ADGKKLNVRRFDDRWISAVSGDVSYELDRQNGNLTYAGSTMKDGIATTIIGAGQCSLATGPAR*
Ga0066388_1053574642	3300005332	Tropical Forest Soil	GKALNVRRFDERWISAVSGDVSYELDRQSGNLTYAGSTMKDGIATTIIGAGQCTLATAPAR*
Ga0066388_1058005002	3300005332	Tropical Forest Soil	ADGKKLNVRRFDDRWISAVSGDVSYELDRQNGNLTYAGSAMKDGIATTIIGAGQCSLATGPAR*
Ga0066388_1066981002	3300005332	Tropical Forest Soil	VSYELDRQSGNLTYASSTMKDGIATTIIGAGQCTLAPAPR*
Ga0066388_1072868911	3300005332	Tropical Forest Soil	VTLADGKKLNVRRFDDGWISAVSGDVSYELDRQNGNLTYAGSTMKDGIATTIIGAGRCTVAAAPAR*
Ga0008090_153207031	3300005363	Tropical Rainforest Soil	ADGKKLNVRRFDDYWISAASGGVSYELDRQNGNLTYAGSTMKAGIATTIIGSGRCKLTAGPASG*
Ga0070705_1019441481	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	GPTKIVTFADGKKLNVRRFDDHWISAVSGDVSYELDRQNGNLTFAGSTMKGGIATTIIGAGRCTAATAPAR*
Ga0070706_1019296551	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	VTLADGKKLNVRRFDDRWISAVSGDVSYELDRQNGNLTYAGSAMKDGIATTIIGAGQCTLATSPAR*
Ga0070697_1017189321	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	DVSYELDRQNGNLTYAGSTMKGGIATTIIGAGRCTFAAAPAR*
Ga0066706_114833922	3300005598	Soil	SADNGDVSYELDRQNGNLSYAGSTIKDGTVTTIIGAGQCTLATVPAR*
Ga0066905_1006349041	3300005713	Tropical Forest Soil	LNVRRFDDRWISAVSGDVSYELDRQNGNLTYAGSAMKDGIATTIIGAGQCSLATGPAR*
Ga0066905_1011878932	3300005713	Tropical Forest Soil	LNVRRFDDRWISAVSGDVSYELDRQNGNLTYAGSAMKDGIATTIIGAGQCTLATGPAR*
Ga0066903_1031865652	3300005764	Tropical Forest Soil	VTLADGKKLNVRRFDDRWISAVSGDVSYELDRQNGNLTYAGSAMKDGIATTIIGAGQCSLATGPAR*
Ga0066903_1036241582	3300005764	Tropical Forest Soil	VTLADGKKLNVRRFDDRWISAVSGDVSYELDRQNGNLTYAGSTMKDGIATTIIGAGQCSLATGPAR*
Ga0066903_1037021542	3300005764	Tropical Forest Soil	SYELDRQNGNLTYAGSTMKDGIATTIIGAGQCTLATAPAR*
Ga0066903_1051219141	3300005764	Tropical Forest Soil	SAVSGDVSYELDRQNGNLTYAGSTMKDGIATTIIGAGQCTLTTAPAR*
Ga0066903_1061049241	3300005764	Tropical Forest Soil	SAVSGDVSYELDRQNGNLTYAGSTMKDGIATTIIGAGQCTPATGPAR*
Ga0066903_1068609742	3300005764	Tropical Forest Soil	SGDVSYELDRQNGNLTFAGSTMKDGIATTIIGAGRCTAAIAPAR*
Ga0066903_1081552312	3300005764	Tropical Forest Soil	NVGRFDDGWITAVSGDVSYELDRQNGNLTYAGSTMKDGIATTIIGSGRCTVATAPAR*
Ga0066903_1082592612	3300005764	Tropical Forest Soil	SAVSGDVSYELDRQNGNLTYAGSTMKDGIATTIIGAGQCTLAPVPAR*
Ga0070712_1005901501	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	TFADGKKLNVRRFDDHWISAVSGDVSYELDRQNGNLTFAGSTMKGGIATTIIGAGRCTAATAPAR*
Ga0070765_1010231522	3300006176	Soil	VTLADGKKLNVRRFDDRWISAVSGDVSYELDRQNGNLTYAGSAMKDGIATTIIGAGQCTLAAGPAR*
Ga0075431_1018725821	3300006847	Populus Rhizosphere	SAVSGDVSYELDRQNGNLTYAGSTTKDGIATTIIGAGQCTLATVPAR*
Ga0075435_1002838531	3300007076	Populus Rhizosphere	ADGKNLDVRRFDDRWISAVSGDVSYELDRQNGNLTYAGSTTKDGIATTIIGAGQCTLATVPAR*
Ga0099795_101387043	3300007788	Vadose Zone Soil	VRRFDDRWISAASGDVSYELDRQNGNLTFAGSTMKDGIATTIIGAGRCTAATAPAR*
Ga0099829_101739482	3300009038	Vadose Zone Soil	AVSGDVSYELDRQSGNLTYAGSAMKDGIATTIIGAGQCTLATGPAR*
Ga0126374_100451973	3300009792	Tropical Forest Soil	DGWITTVSGDVSYELDRQNGNLTYAGSTMKDGIATTIIGAGRCTVATAPAR*
Ga0126374_104824151	3300009792	Tropical Forest Soil	IVTLADGKKLNVRRFDDRWISAVSGDVSYELDRQNGNLTYAGSAMKDGIATTIIGAGQCSLATGPAR*
Ga0126374_105147361	3300009792	Tropical Forest Soil	HWISAVSGDVSYELDRQNGNLTFAGSTMKDGIATTIIGAGRCTAATAPAR*
Ga0126376_116156751	3300010359	Tropical Forest Soil	TKIVTLADGKKLNIRRFDERWISAVSGDVSYELDRQSGNLTYAGSTMKDGIATTIIGAGQCTLAPAPR*
Ga0126379_113167761	3300010366	Tropical Forest Soil	WISAVSGDVSYELDRQNGNLSYAGSTMKDGIATTIIGAGRCTVAAAPAR*
Ga0126379_117238912	3300010366	Tropical Forest Soil	TIRRFDDHWISAVSGDVSYELDRQNGNLTYAGSTMKDGIATTIIGAGQCTPATGPAR*
Ga0126379_131302451	3300010366	Tropical Forest Soil	KKLNVRRFDDRWISAVSGDVSYELDRQNGNLTYAGSAMKDGIATTIIGAGQCSLATGPAR
Ga0126383_122210731	3300010398	Tropical Forest Soil	LNVRRFGERWISAVSGDVSYELDRQNGNLTYAGSTMKDGIATTIIGAGQCTLAPGPAR*
Ga0137388_117488522	3300012189	Vadose Zone Soil	DYATKIVTLADGKKLNVRRFDDRWISAVSGDVSYELDRQNGNLTYAGSAMKDGIATTIIGAGQCTLATSPAR*
Ga0137364_100978803	3300012198	Vadose Zone Soil	MSALQKAKLSVRRFDDHWISVASGDVSYELDRQNGNLTYASAMMKDGIATTIIGAGKCTLAPAPAR*
Ga0137364_111023021	3300012198	Vadose Zone Soil	NFGFWIDEPTKIVTFADGKKLNVRRFDDHWISAVSGDVSYELDRQNGNLTFAGSTMKGGIATTIIGAGRCTAATAPAR*
Ga0137362_105039582	3300012205	Vadose Zone Soil	VRRFDDRWISAASGDVFYELDRQNGNLTYASSTMKDGIATTIIGAGRCTLATVPAR*
Ga0137379_108737783	3300012209	Vadose Zone Soil	WISAASGDVSYELDRENGNLTYAGSTTNNGAATIIIGSGRCKIAADPAG*
Ga0137384_101642973	3300012357	Vadose Zone Soil	ADGKKLNVRRFDDRWISAVSGDVSYELDRQNGNLTYAGSAMKDGIATTTIGAGQCTLATSPAR*
Ga0137360_106376841	3300012361	Vadose Zone Soil	VTLADGKKLNVRRFDDRWISAVSGDVSYELDRQSGNLTYAGSAMKDGIATTIIGAGQCTLATGPAR*
Ga0137361_107915991	3300012362	Vadose Zone Soil	DGKKLNVRRFDDRWISAVSGDVSYELDRQNGNLTYAGSAMKDGIATTIIGAGQCTLATGPAR*
Ga0137359_114524202	3300012923	Vadose Zone Soil	KLNVRRFDDRWISAVSGDVSYELDRQNGNLTYAGSAMKDGIATTIIGAGQCTLATGPAR*
Ga0137419_111724062	3300012925	Vadose Zone Soil	TFADGKKLNVRRFDDHWISAVSGDVSYELDRQNGNLTFAGSTMKDGIATTIIGAGRCTAATAPAR*
Ga0126369_126888531	3300012971	Tropical Forest Soil	NIHRFDDHWISAVSRDVSYELDSQSGNLTDASSTMKDGIATTIIGAGRCTPATLPAR*
Ga0164304_115524181	3300012986	Soil	RRFDERWISAVSGYVSYELDRQNGNLTYAGSTMQDGIATTIIGAGQCTLATVPAR*
Ga0164307_113962951	3300012987	Soil	KIVTLADDKKLIVRRFDDRWITAASGDVSYELDRQNGNLTYASSTMKDGIATIIIGSGRCKIAAGPAG*
Ga0163162_133770361	3300013306	Switchgrass Rhizosphere	VGQTSILRTPFRGKKLNVRRFDDHWISAVSGDVSYELDRQNGNLTFAGSTMKDGIATTIIGAGRCTAATAPAR*
Ga0182036_109142171	3300016270	Soil	NFGFWIDEPTKVVTFADGKKLNVRRVDGHWISAVSGDVSYELDRQNGNLTFAGLTMKDGVATTIIGAGRCTAAIAPAR
Ga0182036_116668801	3300016270	Soil	GKKLNVRRFDDHWISAVSGDVSYELDRQNGNLTFAGSTMKGGIATTIIGAGRCAAATAPA
Ga0182041_108751721	3300016294	Soil	VSGDVSYELDRQNGNLTYAGSTMKDGIATTIIGAGQCTLATVPAR
Ga0182035_108196122	3300016341	Soil	DRWISAVSGDVSYELDRQNGNLTYAGSTMKDGIATTIIGAGQCTLATVPAR
Ga0182035_111260621	3300016341	Soil	KVVTFADGKKLNVRRVDDHWISAVSGDVSYELDRQNGNLTFAGSTMKDGVATTIIGAGRCTAAIAPAR
Ga0182035_118860372	3300016341	Soil	FWIDDATKIVTLADGKKLNVRRFDDRWISAVSGDVSYELDRQNGNLTYAGSAMKDGVATTIIGAGQCTLATGPAR
Ga0182032_114286481	3300016357	Soil	ISAVSGDVSYELDRQNGNLTYAGSTMKDGIATTIIGAGQCTVATGPAR
Ga0066667_117473212	3300018433	Grasslands Soil	GISAVSGDVSYEFDRQNGNLTYAGSAMKDSIATTIIGAGQCTLATGPAR
Ga0210408_100639461	3300021178	Soil	RFDDRWISAVSGDVSYELDRQNGNLTYAGSEMKDGIATTIIGAGQCTLAAGPAR
Ga0213872_100580261	3300021361	Rhizosphere	VTLADGKKLNVRRFDDRWISAVSGDVSYELDRQNGNLTYAGSAMKDGVATTIIGAGQCTLATVPAR
Ga0213878_100301353	3300021444	Bulk Soil	FDDRWISAVSGDVSYELDRQNGNLTYAGSAMKDGVATTIIGAGQCTLATVPAR
Ga0210402_109360571	3300021478	Soil	ADGKKLNVRRFDDHWISAVNGDVSYELDRQNGNLTFAGSTMKGGIATTIIGAGRCTAATAPAR
Ga0126371_117651202	3300021560	Tropical Forest Soil	DGKKLNVGRFDDGWITAVSGDVSYELDRQNSNLTYAGSTMKDGIATTIIGAGRCTVAAAPAR
Ga0207693_105662061	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	LNVRRFDDHWISAVSGDVSYELDRQNGNLTFAGSTMKGGIATTIIGAGRCTAATAPAR
Ga0207700_102115831	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	GDVSYELDRQNGNLTYAGSAMKDGIATTIIGAGQCTLATGPAR
Ga0209056_105618993	3300026538	Soil	KKLIIRRFDDHWVGAAIGDVSYELDRQNGNLSYASSTMKDGIATTMIGAGRCTLATVPAR
Ga0209180_101478051	3300027846	Vadose Zone Soil	ELDRQNGNLSYAGSAMKDGIATTIIGAGQCTLATGPAR
Ga0209488_103177961	3300027903	Vadose Zone Soil	WISAVSGDVSYELDRQSGNLTYAGSTMKDGIATTIIGTGQCTFATLPAR
Ga0318516_107973041	3300031543	Soil	LNVRRVDDRWISAVSGDVSYELDRQNGNLSYAGSTMKDGIATTIIGAGRCTVAAAPAR
Ga0318541_108425031	3300031545	Soil	DDHWISAVSGDVSYELDRQNGNLTFAGSTMKGGIATTIIGAGRCAAATAPAR
Ga0318528_107236381	3300031561	Soil	DEPAKVVTFADGKKLNVRRVDDHWISAVSGDVSYELDRQNGNLTFAGSTMKDGIATTIIGAGRCTAAIAPAR
Ga0310915_104541821	3300031573	Soil	SAVSGDVSYELDRQNGNLTYAGSTMKDGIATTIIGAGQCTLAPVPAR
Ga0318542_102014082	3300031668	Soil	SAVSGDVSYELDRQNGNLTYAGSTMKDGIATTIIGAGQCTLATVPAR
Ga0318542_106418581	3300031668	Soil	KKFNVRRFDDHWISAVSGDVSYELDRQNGNLTFAGSTMKGGIATTIIGAGRCAAATAPAR
Ga0306917_106538091	3300031719	Soil	VSGDVSYELDRQNGNLTYAGSTMKDGIATTIIGAGQCTLAPVPAR
Ga0318500_105183391	3300031724	Soil	SYELDRQSGNLTYAGSTMKDGIATTIIGAGQCTLAAVPAR
Ga0318501_103985431	3300031736	Soil	SYELDRQNGNLTYAGSTMKDGIATTIIGAGQCTLAPVPAR
Ga0306918_102279611	3300031744	Soil	DVSYELDRQNGNLTYAGSTMKDGIATTIIGAGQCTLAPVPAR
Ga0318543_100780054	3300031777	Soil	MSRQKLSRSRMGRNVCRVDDHWISAVSGDVSYELDRQNGNLTFAGLTMKDGVATTIIGAG
Ga0318498_102652551	3300031778	Soil	LNVRRFDERWISAVSGDVSYELDRQSGNLTYAGSTMKDGIATTIIGAGQCTLAAVPAR
Ga0318566_104998851	3300031779	Soil	ADGKKLNVRRFDDRWISAVSGDVSYELDRQNGNLTYAGSTMKDGIATTIIGAGQCTLATVPAR
Ga0318547_109508571	3300031781	Soil	GRNVCRVDDHWISAVSGDVSYELDRQNGNLTFAGSTMKDGVATTIIGAGRCTAAIAPAR
Ga0318529_103636631	3300031792	Soil	KKLNVRRFDERWISAVSGDVSYELDRQSGNLTYAGSTMKDGIATTIIGAGQCTLAAVPAR
Ga0318548_100479004	3300031793	Soil	GKKLNIRRFDERWISAVSGDVSYELDRQSGNLTYASSTMKDGIATTIIGAGQCTLAPAPR
Ga0318557_105543871	3300031795	Soil	AVSGDVSYELDRQNGNLTFAGLTMKDGVATTIIGAGRCTAAIAPAR
Ga0310917_104310151	3300031833	Soil	DRWISAVSGDVSYELDRQNGNLTYAGSAMKDGVATTIIGAGQCTLATGPAR
Ga0310917_110697201	3300031833	Soil	ENFGFWIDEPTKIVTFADGKKLNVRRFDDHWISAVSGDVSYELDRQNGNLTFAGSTMKGGIATTIIGAGRCTAATAPAR
Ga0318512_101240831	3300031846	Soil	DGKKLNVRRFDERWISAVSGDVSYELDRQSGNLTYAGSTMKDGIATTIIGAGQCTLAAVPAR
Ga0318520_110748521	3300031897	Soil	RNVCRVDDHWISAVSGDVSYELDRQNGNLTFAGLTMKDGVATTIIGAGRCTAAIAPAR
Ga0306921_122725471	3300031912	Soil	FDDHWISAVSGDVSYELDRQNGNLTFAGSTMKGGIATTIIGAGRCAAATAPAR
Ga0310912_110247482	3300031941	Soil	ELDRQNGSLTYAGSTMKDGIATTIIGAGQCTLATVPAR
Ga0310910_100929921	3300031946	Soil	TLADGKKLNVRRFDDRWISAVSGDVSYELDRQNGNLTYAGSAMKDGVATTIIGAGQCTLATGPAR
Ga0310910_104257333	3300031946	Soil	VSDDVSYKLDRQNGNLTYAGSTMKDGIATTIIGAGRCIVAAAP
Ga0310909_116341681	3300031947	Soil	NFGFWIDEPTKIVTFADGKKFNVRRFDDHWISAVSGDVSYELDRQNGNLTFAGSTMKGGIATTIIGAGRCTAATAPAR
Ga0306926_116287372	3300031954	Soil	RFGDRWISAVSGDVSYELDRQNGNLTYAGSTMKDGIATTIIGAGQCTLAPVPAR
Ga0306926_117628091	3300031954	Soil	DDHWISAVSGDVSYELDRQNGNLTFAGSTMKGGIATTIIGAGRCTAATAPER
Ga0318530_102871131	3300031959	Soil	SYELDRQNGSLTYAGSTMKDGIATTIIGAGQCTLATVPAR
Ga0306922_120880022	3300032001	Soil	INETTKVVTLADGKKLNVGRFDDGWITAVSGDVSYELDWQNGNLTYAGSTMKDGIATTIIGAGRCTVATAPAR
Ga0306922_121060981	3300032001	Soil	WISAVSGDVSYELDRQNGNLTYAGSTMKDGIATTIIGAGQCTLAPVPAR
Ga0318545_102449111	3300032042	Soil	IDEPTRVVTFADGKKLNVRRVDDHWISAVSGDVSYELDRQNGNLTFAGSTMKDGVATTIIGAGRCTAAIAPAR
Ga0318558_102266832	3300032044	Soil	VRRFDERWISAVSGDVSYELDRQSGNLTYAGSTMKDGIATTIIGAGQCTLAAVPAR
Ga0318532_102442342	3300032051	Soil	DVSYELDRQNGNLSYAGSTMKDGIATTIIGAGRCTVAAAPAR
Ga0318506_104037772	3300032052	Soil	LNIRRFDDHWISAVSGDVSYELDRQNGNLTFAGSTMKGGIATTIIGAGRCAAATAPAR
Ga0318533_105006742	3300032059	Soil	IDDATKIVTLADGKKLNVRRFDDRWISAVSGDVSYELDRQNGNLTYAGSAMKDGVATTIIGAGQCTLATGPAR
Ga0318505_103034792	3300032060	Soil	RWISAVSGDVSYELDRQNGNLTYAGSTMKDGIATTIIGAGQCTLATVPAR
Ga0318553_102652411	3300032068	Soil	YELDRQNGSLTYAGSTMKDGIATTIIGAGQCTLATVPAR
Ga0307471_1036172331	3300032180	Hardwood Forest Soil	FDDRWISAVSGDVSYELDRQNGNLTYAGSTTKDGIATTIIGAGQCTLATVPAR
Ga0306920_1025659532	3300032261	Soil	WISAVSGDVSYELDRQNGNLTYAGSTMKDGIATTIIGAGQCTVATGPAR
Ga0318519_109578922	3300033290	Soil	DDRWISAVSGDVSYELDRQNGNLTYAGSAMKDGVATTIIGAGQCTLATGPAR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F079025

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences