Metagenome / Metatranscriptome Family F078975

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F078975
Family Type	Metagenome / Metatranscriptome
Number of Sequences	116
Average Sequence Length	52 residues
Representative Sequence	MKVLFSAVLAAGLLAGCISSSSPPPPAKTTVVVPQGSGTTVVCQNGNPPPCD
Number of Associated Samples	87
Number of Associated Scaffolds	116

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	91.30 %
% of genes near scaffold ends (potentially truncated)	18.97 %
% of genes from short scaffolds (< 2000 bps)	62.93 %
Associated GOLD sequencing projects	81
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.23

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (77.586 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa (12.931 % of family members)
Environment Ontology (ENVO)	Unclassified (29.310 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (56.897 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Fibrous	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 15.00% β-sheet: 0.00% Coil/Unstructured: 85.00%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.23
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.23
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 116 Family Scaffolds
PF09601	DUF2459	31.03
PF03167	UDG	7.76
PF00196	GerE	6.03
PF04055	Radical_SAM	4.31
PF00970	FAD_binding_6	4.31
PF07730	HisKA_3	4.31
PF02518	HATPase_c	3.45
PF12680	SnoaL_2	2.59
PF00083	Sugar_tr	1.72
PF00563	EAL	0.86
PF13522	GATase_6	0.86
PF01904	DUF72	0.86
PF12762	DDE_Tnp_IS1595	0.86
PF01207	Dus	0.86
PF04366	Ysc84	0.86
PF13193	AMP-binding_C	0.86
PF01370	Epimerase	0.86
PF04612	T2SSM	0.86
PF12268	DUF3612	0.86
PF10685	KGG	0.86
PF05742	TANGO2	0.86
PF12706	Lactamase_B_2	0.86
PF07715	Plug	0.86
PF01339	CheB_methylest	0.86
PF07859	Abhydrolase_3	0.86
PF13426	PAS_9	0.86
PF00582	Usp	0.86
PF00989	PAS	0.86
PF00550	PP-binding	0.86

COG ID	Name	Functional Category	% Frequency in 116 Family Scaffolds
COG0692	Uracil-DNA glycosylase	Replication, recombination and repair [L]	7.76
COG1573	Uracil-DNA glycosylase	Replication, recombination and repair [L]	7.76
COG3663	G:T/U-mismatch repair DNA glycosylase	Replication, recombination and repair [L]	7.76
COG4585	Signal transduction histidine kinase ComP	Signal transduction mechanisms [T]	4.31
COG4564	Signal transduction histidine kinase	Signal transduction mechanisms [T]	4.31
COG3851	Signal transduction histidine kinase UhpB, glucose-6-phosphate specific	Signal transduction mechanisms [T]	4.31
COG3850	Signal transduction histidine kinase NarQ, nitrate/nitrite-specific	Signal transduction mechanisms [T]	4.31
COG2201	Chemotaxis response regulator CheB, contains REC and protein-glutamate methylesterase domains	Signal transduction mechanisms [T]	1.72
COG3332	Uncharacterized stress-responsive protein, TANGO2 (Transport and Golgi organisation 2) family, contains NRDE motif	General function prediction only [R]	0.86
COG5001	Cyclic di-GMP metabolism protein, combines GGDEF and EAL domains with a 6TM membrane domain	Signal transduction mechanisms [T]	0.86
COG4943	Redox-sensing c-di-GMP phosphodiesterase, contains CSS-motif and EAL domains	Signal transduction mechanisms [T]	0.86
COG3434	c-di-GMP phosphodiesterase YuxH/PdeH, contains EAL and HDOD domains	Signal transduction mechanisms [T]	0.86
COG0042	tRNA-dihydrouridine synthase	Translation, ribosomal structure and biogenesis [J]	0.86
COG3149	Type II secretory pathway, component PulM	Intracellular trafficking, secretion, and vesicular transport [U]	0.86
COG2930	Lipid-binding SYLF domain, Ysc84/FYVE family	Lipid transport and metabolism [I]	0.86
COG2200	EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant)	Signal transduction mechanisms [T]	0.86
COG1801	Sugar isomerase-related protein YecE, UPF0759/DUF72 family	General function prediction only [R]	0.86
COG0657	Acetyl esterase/lipase	Lipid transport and metabolism [I]	0.86

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	77.59 %
Unclassified	root	N/A	22.41 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	77.59 %
Unclassified	root	N/A	22.41 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	77.59 %
Unclassified	root	N/A	22.41 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	67.24 %
Unclassified	root	N/A	22.41 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	22.41 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	16.38 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	12.07 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3.45 %
Acidithiobacillia	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Acidithiobacillia	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	22.41 %
Nevskiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales	11.21 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	9.48 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	2.59 %
Acidithiobacillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Acidithiobacillia → Acidithiobacillales	0.86 %
Xanthomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	22.41 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	8.62 %
Sinobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Sinobacteraceae	6.03 %
Steroidobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae	5.17 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	2.59 %
Acidithiobacillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Acidithiobacillia → Acidithiobacillales → Acidithiobacillaceae	0.86 %
Xanthomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	22.41 %
Nevskia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Sinobacteraceae → Nevskia	6.03 %
Steroidobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter	5.17 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	2.59 %
Acidithiobacillus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Acidithiobacillia → Acidithiobacillales → Acidithiobacillaceae → Acidithiobacillus	0.86 %
Cupriavidus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Cupriavidus	0.86 %
Xanthomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	22.41 %
Nevskia soli	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Sinobacteraceae → Nevskia → Nevskia soli	6.03 %
Steroidobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter	5.17 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	2.59 %
Acidithiobacillus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Acidithiobacillia → Acidithiobacillales → Acidithiobacillaceae → Acidithiobacillus	0.86 %
Cupriavidus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Cupriavidus	0.86 %
Xanthomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	0.86 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001867\|JGI12627J18819_10027465	All Organisms → cellular organisms → Bacteria → Proteobacteria	2344	Open in IMG/M
3300002245\|JGIcombinedJ26739_100222021	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Sinobacteraceae → Nevskia → Nevskia soli	1782	Open in IMG/M
3300004092\|Ga0062389_101890825	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	775	Open in IMG/M
3300004092\|Ga0062389_102956820	Not Available	635	Open in IMG/M
3300004152\|Ga0062386_100399511	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Sinobacteraceae → Nevskia → Nevskia soli	1106	Open in IMG/M
3300004152\|Ga0062386_101849076	Not Available	504	Open in IMG/M
3300005531\|Ga0070738_10142616	All Organisms → cellular organisms → Bacteria → Proteobacteria	1184	Open in IMG/M
3300005534\|Ga0070735_10310760	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	949	Open in IMG/M
3300005541\|Ga0070733_10170860	All Organisms → cellular organisms → Bacteria → Proteobacteria	1416	Open in IMG/M
3300005591\|Ga0070761_10125582	All Organisms → cellular organisms → Bacteria → Proteobacteria	1492	Open in IMG/M
3300005591\|Ga0070761_10157383	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	1333	Open in IMG/M
3300005591\|Ga0070761_10597580	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	686	Open in IMG/M
3300005602\|Ga0070762_10003891	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	7161	Open in IMG/M
3300005602\|Ga0070762_10027652	All Organisms → cellular organisms → Bacteria → Proteobacteria	3009	Open in IMG/M
3300005712\|Ga0070764_10199901	All Organisms → cellular organisms → Bacteria → Proteobacteria	1120	Open in IMG/M
3300005712\|Ga0070764_10333380	All Organisms → cellular organisms → Bacteria	883	Open in IMG/M
3300006176\|Ga0070765_100250649	All Organisms → cellular organisms → Bacteria → Proteobacteria	1623	Open in IMG/M
3300006176\|Ga0070765_100739949	All Organisms → cellular organisms → Bacteria → Proteobacteria	929	Open in IMG/M
3300006893\|Ga0073928_10761339	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Cupriavidus	671	Open in IMG/M
3300009510\|Ga0116230_10015027	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	7610	Open in IMG/M
3300009633\|Ga0116129_1012105	All Organisms → cellular organisms → Bacteria	3290	Open in IMG/M
3300009701\|Ga0116228_10919661	Not Available	584	Open in IMG/M
3300009709\|Ga0116227_10346391	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1135	Open in IMG/M
3300010379\|Ga0136449_100084093	All Organisms → cellular organisms → Bacteria	6683	Open in IMG/M
3300013314\|Ga0175859_1157722	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	3421	Open in IMG/M
3300014164\|Ga0181532_10724943	Not Available	535	Open in IMG/M
3300014167\|Ga0181528_10101598	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1564	Open in IMG/M
3300014168\|Ga0181534_10002476	All Organisms → cellular organisms → Bacteria → Proteobacteria	11377	Open in IMG/M
3300014492\|Ga0182013_10006579	All Organisms → cellular organisms → Bacteria → Proteobacteria	13102	Open in IMG/M
3300014493\|Ga0182016_10022129	All Organisms → cellular organisms → Bacteria	5620	Open in IMG/M
3300014495\|Ga0182015_10503685	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter	774	Open in IMG/M
3300014499\|Ga0182012_10926927	Not Available	549	Open in IMG/M
3300014654\|Ga0181525_10756655	Not Available	547	Open in IMG/M
3300018035\|Ga0187875_10357464	Not Available	784	Open in IMG/M
3300018042\|Ga0187871_10060668	All Organisms → cellular organisms → Bacteria → Proteobacteria	2245	Open in IMG/M
3300018044\|Ga0187890_10485885	Not Available	694	Open in IMG/M
3300019787\|Ga0182031_1083916	Not Available	1529	Open in IMG/M
3300020021\|Ga0193726_1000033	All Organisms → cellular organisms → Bacteria	357502	Open in IMG/M
3300020021\|Ga0193726_1008162	All Organisms → cellular organisms → Bacteria → Proteobacteria	5862	Open in IMG/M
3300021181\|Ga0210388_10285088	All Organisms → cellular organisms → Bacteria → Proteobacteria	1450	Open in IMG/M
3300021401\|Ga0210393_10069823	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	2772	Open in IMG/M
3300021402\|Ga0210385_10151144	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	1661	Open in IMG/M
3300021402\|Ga0210385_10605576	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter	835	Open in IMG/M
3300021403\|Ga0210397_10117148	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	1822	Open in IMG/M
3300021404\|Ga0210389_10810419	Not Available	731	Open in IMG/M
3300021405\|Ga0210387_10876545	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Sinobacteraceae → Nevskia → Nevskia soli	791	Open in IMG/M
3300021406\|Ga0210386_10090438	All Organisms → cellular organisms → Bacteria	2494	Open in IMG/M
3300021420\|Ga0210394_11536749	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter	562	Open in IMG/M
3300021433\|Ga0210391_10025664	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	4740	Open in IMG/M
3300021433\|Ga0210391_10535462	All Organisms → cellular organisms → Bacteria → Proteobacteria	920	Open in IMG/M
3300021474\|Ga0210390_10210742	Not Available	1644	Open in IMG/M
3300021477\|Ga0210398_10956579	All Organisms → cellular organisms → Bacteria	685	Open in IMG/M
3300021478\|Ga0210402_10063957	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	3238	Open in IMG/M
3300023101\|Ga0224557_1074729	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter	1459	Open in IMG/M
3300025463\|Ga0208193_1011582	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	2678	Open in IMG/M
3300025463\|Ga0208193_1015579	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	2184	Open in IMG/M
3300027176\|Ga0208992_1058625	All Organisms → cellular organisms → Bacteria → Proteobacteria → Acidithiobacillia → Acidithiobacillales → Acidithiobacillaceae → Acidithiobacillus	528	Open in IMG/M
3300027505\|Ga0209218_1057230	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	792	Open in IMG/M
3300027528\|Ga0208985_1000174	All Organisms → cellular organisms → Bacteria → Proteobacteria	8244	Open in IMG/M
3300027559\|Ga0209222_1002086	All Organisms → cellular organisms → Bacteria → Proteobacteria	4636	Open in IMG/M
3300027559\|Ga0209222_1008932	All Organisms → cellular organisms → Bacteria → Proteobacteria	2067	Open in IMG/M
3300027609\|Ga0209221_1001397	All Organisms → cellular organisms → Bacteria → Proteobacteria	6284	Open in IMG/M
3300027609\|Ga0209221_1160907	All Organisms → cellular organisms → Bacteria → Proteobacteria	555	Open in IMG/M
3300027807\|Ga0209208_10035953	All Organisms → cellular organisms → Bacteria → Proteobacteria	4807	Open in IMG/M
3300027807\|Ga0209208_10077866	Not Available	2458	Open in IMG/M
3300027860\|Ga0209611_10013853	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	10952	Open in IMG/M
3300027860\|Ga0209611_10107884	Not Available	1852	Open in IMG/M
3300027860\|Ga0209611_10131691	Not Available	1616	Open in IMG/M
3300027879\|Ga0209169_10022666	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	3374	Open in IMG/M
3300027889\|Ga0209380_10051030	All Organisms → cellular organisms → Bacteria	2347	Open in IMG/M
3300027895\|Ga0209624_11098283	Not Available	512	Open in IMG/M
3300027908\|Ga0209006_10949729	Not Available	687	Open in IMG/M
3300027965\|Ga0209062_1094927	All Organisms → cellular organisms → Bacteria → Proteobacteria	1267	Open in IMG/M
3300028536\|Ga0137415_10099766	All Organisms → cellular organisms → Bacteria	2757	Open in IMG/M
3300028773\|Ga0302234_10196316	Not Available	874	Open in IMG/M
3300028773\|Ga0302234_10369152	Not Available	615	Open in IMG/M
3300028801\|Ga0302226_10480711	Not Available	518	Open in IMG/M
3300028879\|Ga0302229_10188854	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter	945	Open in IMG/M
3300028906\|Ga0308309_11244043	Not Available	641	Open in IMG/M
3300029911\|Ga0311361_10265699	Not Available	1984	Open in IMG/M
3300029913\|Ga0311362_11385939	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Sinobacteraceae → Nevskia → Nevskia soli	502	Open in IMG/M
3300029922\|Ga0311363_10902733	Not Available	793	Open in IMG/M
3300029922\|Ga0311363_11104061	All Organisms → cellular organisms → Bacteria → Proteobacteria	681	Open in IMG/M
3300029943\|Ga0311340_10253405	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Sinobacteraceae → Nevskia → Nevskia soli	1716	Open in IMG/M
3300029951\|Ga0311371_10098771	All Organisms → cellular organisms → Bacteria → Proteobacteria	4656	Open in IMG/M
3300029954\|Ga0311331_10162964	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2638	Open in IMG/M
3300030503\|Ga0311370_10209346	All Organisms → cellular organisms → Bacteria → Proteobacteria	2614	Open in IMG/M
3300030520\|Ga0311372_10445624	All Organisms → cellular organisms → Bacteria → Proteobacteria	1933	Open in IMG/M
3300030580\|Ga0311355_10210609	All Organisms → cellular organisms → Bacteria → Proteobacteria	2026	Open in IMG/M
3300030617\|Ga0311356_10286107	All Organisms → cellular organisms → Bacteria → Proteobacteria	1657	Open in IMG/M
3300031027\|Ga0302308_10841844	Not Available	508	Open in IMG/M
3300031029\|Ga0074012_11120989	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	602	Open in IMG/M
3300031236\|Ga0302324_100000148	All Organisms → cellular organisms → Bacteria → Proteobacteria	180074	Open in IMG/M
3300031236\|Ga0302324_100856705	All Organisms → cellular organisms → Bacteria → Proteobacteria	1256	Open in IMG/M
3300031236\|Ga0302324_100893487	All Organisms → cellular organisms → Bacteria → Proteobacteria	1223	Open in IMG/M
3300031525\|Ga0302326_12287399	All Organisms → cellular organisms → Bacteria → Proteobacteria	686	Open in IMG/M
3300031670\|Ga0307374_10020246	All Organisms → cellular organisms → Bacteria → Proteobacteria	8468	Open in IMG/M
3300031670\|Ga0307374_10141171	All Organisms → cellular organisms → Bacteria → Proteobacteria	1906	Open in IMG/M
3300031708\|Ga0310686_100912886	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Sinobacteraceae → Nevskia → Nevskia soli	810	Open in IMG/M
3300031708\|Ga0310686_103755956	All Organisms → cellular organisms → Bacteria	1149	Open in IMG/M
3300031708\|Ga0310686_104509748	All Organisms → cellular organisms → Bacteria → Proteobacteria	75546	Open in IMG/M
3300031708\|Ga0310686_104895586	All Organisms → cellular organisms → Bacteria → Proteobacteria	2898	Open in IMG/M
3300031708\|Ga0310686_107755308	All Organisms → cellular organisms → Bacteria → Proteobacteria	19586	Open in IMG/M
3300031715\|Ga0307476_10588491	Not Available	825	Open in IMG/M
3300031823\|Ga0307478_10160803	All Organisms → cellular organisms → Bacteria → Proteobacteria	1788	Open in IMG/M
3300031823\|Ga0307478_10968787	All Organisms → cellular organisms → Bacteria → Proteobacteria	711	Open in IMG/M
3300032160\|Ga0311301_10132300	All Organisms → cellular organisms → Bacteria → Proteobacteria	4626	Open in IMG/M
3300032896\|Ga0335075_10005861	All Organisms → cellular organisms → Bacteria → Proteobacteria	19007	Open in IMG/M
3300032896\|Ga0335075_10264947	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Sinobacteraceae → Nevskia → Nevskia soli	1962	Open in IMG/M
3300032898\|Ga0335072_10276111	All Organisms → cellular organisms → Bacteria	1906	Open in IMG/M
3300032898\|Ga0335072_10558539	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter	1165	Open in IMG/M
3300033402\|Ga0326728_10054808	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	5697	Open in IMG/M
3300034065\|Ga0334827_254477	Not Available	511	Open in IMG/M
3300034159\|Ga0370509_0354139	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	540	Open in IMG/M
3300034282\|Ga0370492_0019885	All Organisms → cellular organisms → Bacteria	2754	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	91.38%
Host-Associated	Host-Associated	8.62%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	78.45%
Aquatic	Environmental → Aquatic	12.93%
Plants	Host-Associated → Plants	8.62%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	58.62%
Peat	Environmental → Terrestrial → Peat	19.83%
Freshwater	Environmental → Aquatic → Freshwater	12.07%
Peat Moss	Host-Associated → Plants → Peat Moss	7.76%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.86%
Phyllosphere	Host-Associated → Plants → Phyllosphere	0.86%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	27.59%
Loam	Environmental → Terrestrial → Soil → Loam	19.83%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	19.83%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	12.07%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	9.48%
Unclassified	Host-Associated → Plants → Peat Moss → Unclassified	7.76%
Clay	Environmental → Terrestrial → Soil → Clay	1.72%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	0.86%
Unclassified	Host-Associated → Plants → Phyllosphere → Unclassified	0.86%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	19.83%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	19.83%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	15.52%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	12.07%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	9.48%
Unclassified	Host-Associated → Plants → Peat Moss → Unclassified → Unclassified	7.76%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	5.17%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	4.31%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	2.59%
Unclassified	Environmental → Terrestrial → Soil → Clay → Unclassified	1.72%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	0.86%
Unclassified	Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified	0.86%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	12.93%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	12.93%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	10.34%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	9.48%
Host-Associated	Host-Associated → Plants → Peat Moss → Unclassified → Unclassified → Host-Associated	7.76%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	6.03%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	3.45%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	3.45%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	3.45%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	3.45%
Bog	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog	3.45%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	2.59%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	2.59%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.59%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	2.59%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	1.72%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	1.72%
Soil	Environmental → Terrestrial → Soil → Clay → Unclassified → Soil	1.72%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	1.72%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	1.72%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	0.86%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.86%
Palsa	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa	0.86%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	0.86%
Moss Associated	Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Moss Associated	0.86%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001867	Texas A ecozone_OM1H0_M2 (Combined assembly for Texas A ecozone Site metagenome samples, ASSEMBLY_DATE=20130705)	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental	Open in IMG/M
3300005531	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen12_06102014_R2	Environmental	Open in IMG/M
3300005534	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1	Environmental	Open in IMG/M
3300005541	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1	Environmental	Open in IMG/M
3300005591	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005712	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006893	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG	Environmental	Open in IMG/M
3300009510	Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fd - Sphagnum fallax MG	Host-Associated	Open in IMG/M
3300009633	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_17_10	Environmental	Open in IMG/M
3300009701	Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fc - Sphagnum fallax MG	Host-Associated	Open in IMG/M
3300009709	Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fb - Sphagnum magellanicum MG	Host-Associated	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300013314	Moss microbial communities from three moss species from boreal forest in Fairbanks, Alaska, USA Reanalysis	Host-Associated	Open in IMG/M
3300014164	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_30_metaG	Environmental	Open in IMG/M
3300014167	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin10_10_metaG	Environmental	Open in IMG/M
3300014168	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_10_metaG	Environmental	Open in IMG/M
3300014492	Permafrost microbial communities from Stordalen Mire, Sweden - 612S2M metaG	Environmental	Open in IMG/M
3300014493	Permafrost microbial communities from Stordalen Mire, Sweden - 712S2M metaG	Environmental	Open in IMG/M
3300014495	Permafrost microbial communities from Stordalen Mire, Sweden - 712P3M metaG	Environmental	Open in IMG/M
3300014499	Permafrost microbial communities from Stordalen Mire, Sweden - 612S2S metaG	Environmental	Open in IMG/M
3300014654	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_10_metaG	Environmental	Open in IMG/M
3300018035	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_10	Environmental	Open in IMG/M
3300018042	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_10	Environmental	Open in IMG/M
3300018044	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_21_10	Environmental	Open in IMG/M
3300019787	Permafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (PacBio error correction)	Environmental	Open in IMG/M
3300020021	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c1	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021402	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300023101	Peat soil microbial communities from Stordalen Mire, Sweden - 717 S3 10-14	Environmental	Open in IMG/M
3300025463	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_17_10 (SPAdes)	Environmental	Open in IMG/M
3300027176	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM1_O1 (SPAdes)	Environmental	Open in IMG/M
3300027505	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_O3 (SPAdes)	Environmental	Open in IMG/M
3300027528	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_O1 (SPAdes)	Environmental	Open in IMG/M
3300027559	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_O3 (SPAdes)	Environmental	Open in IMG/M
3300027609	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300027807	Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fd - Sphagnum fallax MG (SPAdes)	Host-Associated	Open in IMG/M
3300027860	Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fc - Sphagnum magellanicum MG (SPAdes)	Host-Associated	Open in IMG/M
3300027879	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4 (SPAdes)	Environmental	Open in IMG/M
3300027889	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)	Environmental	Open in IMG/M
3300027895	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)	Environmental	Open in IMG/M
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300027965	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen12_06102014_R2 (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300028773	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N3_2	Environmental	Open in IMG/M
3300028801	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E3_3	Environmental	Open in IMG/M
3300028879	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N1_3	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300029911	III_Bog_N2 coassembly	Environmental	Open in IMG/M
3300029913	III_Bog_N3 coassembly	Environmental	Open in IMG/M
3300029922	III_Fen_E1 coassembly	Environmental	Open in IMG/M
3300029943	I_Palsa_N3 coassembly	Environmental	Open in IMG/M
3300029951	III_Palsa_N1 coassembly	Environmental	Open in IMG/M
3300029954	I_Bog_N3 coassembly	Environmental	Open in IMG/M
3300030503	III_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030520	III_Palsa_N2 coassembly	Environmental	Open in IMG/M
3300030580	II_Palsa_N1 coassembly	Environmental	Open in IMG/M
3300030617	II_Palsa_N2 coassembly	Environmental	Open in IMG/M
3300031027	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E3_3	Environmental	Open in IMG/M
3300031029	Metatranscriptome of forest soil microbial communities from Montana, USA - Site 5 -Wood TCEFA (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031236	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_1	Environmental	Open in IMG/M
3300031525	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3	Environmental	Open in IMG/M
3300031670	Soil microbial communities from Risofladan, Vaasa, Finland - OX-3	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032896	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.4	Environmental	Open in IMG/M
3300032898	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.1	Environmental	Open in IMG/M
3300033402	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN	Environmental	Open in IMG/M
3300034065	Peat soil microbial communities from Stordalen Mire, Sweden - 714 S1 1-5	Environmental	Open in IMG/M
3300034159	Peat soil microbial communities from wetlands in Alaska, United States - Frozen_pond_0210_18	Environmental	Open in IMG/M
3300034282	Peat soil microbial communities from wetlands in Alaska, United States - Eight_mile_03D_16	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12627J18819_100274653	3300001867	Forest Soil	MKTLTTLMIAAGLLCGCISSSSPPPPAKTTVVVPPNSTTTVVCQDGTRPPCN*
JGIcombinedJ26739_1002220214	3300002245	Forest Soil	MKVLASMLVAASMLSGCISSSHPSAPAKTTVVVPQNSGGTTVVCQDGTKPPCN*
Ga0062389_1018908251	3300004092	Bog Forest Soil	MKVLLSAMVAAGLLAGCISSSSPPPPQKTTVVVPQGSTTTVVCQNGSPPPCD*
Ga0062389_1029568201	3300004092	Bog Forest Soil	MKVLLSAMIAAGLLAGCVSSSSPAPPAKTTVVVPQGSTTTVVCQNGNPPPCD*
Ga0062386_1003995111	3300004152	Bog Forest Soil	MKMIATAMLAACALAGCISSSNPPPPAKNTTVVVPQNGTAVVCQNGSQPPCD*
Ga0062386_1018490761	3300004152	Bog Forest Soil	MKIVVVSTIIVACLLTGCISSSSPPPPAKNTTVVVPQNGTTVICQ
Ga0070738_101426162	3300005531	Surface Soil	MRMIASALVTAGLLAGCISSSSPPPPQKTTVVVPQGGQTTVVCQNGAPPPCT*
Ga0070735_103107602	3300005534	Surface Soil	MKILASLAVLTPFLLSGCISSSSPPPPAKTTVVVPSNSTTTVVCADGSNPPCQ*
Ga0070733_101708602	3300005541	Surface Soil	MKVISSLLVAVSMLSGCISSSNPSPPQKTTVVVPQNSDTTVVCQDGSSPPCN*
Ga0070761_101255822	3300005591	Soil	MKILSTLVLASAMLCGCISSGSPNPPEKTTVVVPPGSTTTVVCQDGSRPPCN*
Ga0070761_101573832	3300005591	Soil	MKMLASAMMAACLLAGCISSSSPPPPKETTVVVPAGSTTTVVCQDGAAPPC*
Ga0070761_105975802	3300005591	Soil	MKVLFSAVVAAGLLAGCISSSSPPPPQKTTVVVPQGSTTTVVCQN
Ga0070762_100038913	3300005602	Soil	MKILSALVLASAMLCGCISSGSPNPPAKTTVVVPPGSQTTVVCQDGSRPPCN*
Ga0070762_100276521	3300005602	Soil	MKVLFSAMVAAGLLAGCISSSNPPPPQKTTVVVPQGSTTTVVCQNGSPPPCD*
Ga0070764_101999012	3300005712	Soil	MKILSALVVATTMLCGCISSGSPNPPAKTTVVVPPGSSTTVVCQDGSRPPCN*
Ga0070764_103333801	3300005712	Soil	MKALVSAIFAAGLLAGCISSSSPPPPAKTTVVVPQGSTTTVVCQNG
Ga0070765_1002506491	3300006176	Soil	MKILSALVVATAMLCGCISSGSPNPPAKTTVVVPPGSQTTVVCQDGSRPP
Ga0070765_1007399493	3300006176	Soil	MKILSALVMASAMLCGCISSGSPNPPAKTTVIVPPGSSTTVVCQDGSQPPCG*
Ga0073928_107613391	3300006893	Iron-Sulfur Acid Spring	MVAAGLLAGCISSSSPPPPQKTTVVVPQGSTTTVVCQNGNPPPCD*
Ga0116230_100150273	3300009510	Host-Associated	MKVLSSFCVAACLLSGCISSSSPPPPEKNTTVVVPHDSGTVVVCQDGTKPPCH*
Ga0116129_10121054	3300009633	Peatland	MKILSALVLASAMLCGCISSGSPNPPAKTTVVVPAGSQTTVVCQDGSRPPCN*
Ga0116228_109196611	3300009701	Host-Associated	MKLLSTLALTASLLAGCISSSSPPPPEKNTTVVVPRDSGTTVVCQNGSK
Ga0116227_103463912	3300009709	Host-Associated	MKLLLTVMIAAGMLAGCISSSSPAPPAKTTVVVPPGSTTTVVCGNGNPPPCD*
Ga0136449_1000840937	3300010379	Peatlands Soil	MKIAVVSAMVAACLLSGCVSSSSPPAPAKTTVVVPQNGTTVVCQNGSQPPC*
Ga0175859_11577226	3300013314	Moss Associated	MKVIASLLVASSLLTGCISSSSPPPPDKTTVVVPRDNGTTVVCQNGSKPPC*
Ga0181532_107249432	3300014164	Bog	MKMIASAMLAACLLAGCISSSSPPPPAKNTTVVVPQNGTTVVCQSGNPPPCD*
Ga0181528_101015982	3300014167	Bog	VPNEQESTMKVLFSAVLAAGLLVGCISSSSPPPPARTTVVVPQGSGATVVCQNGNPPPCD
Ga0181534_100024764	3300014168	Bog	MKMVASAVIAVCLLGGCISSSSPPPPAKTTVVVPQGGTTVVCNNGNPPPCN*
Ga0182013_100065797	3300014492	Bog	MKVLFSGVLAAGLLAGCISSSSPPPPARTTVVVPQGSGATVVCQNGNLPPCD*
Ga0182016_100221292	3300014493	Bog	MKVLFSGVLAAGLLAGCISSSSPPPPARTTVVVPQGSGATVVCQNGNPPPCD*
Ga0182015_105036851	3300014495	Palsa	MKVLLSAMVAAGLLAGCISSSSPPPPQKTTVVVPAGSTTTVVCQNGSPPPCD*
Ga0182012_109269272	3300014499	Bog	MKVLFSAVLAAGLLAGCISSSSPPPPAKTTVVVPQGSGATVICQNGNPPPCD*
Ga0181525_107566551	3300014654	Bog	MKVLFSAVLAAGLLAGCISSSSPPPPAKTTVVVPQGSGTTVVCQNGNPPPCD*
Ga0187875_103574642	3300018035	Peatland	MKVLLSAVFAAGLLAGCISSSSPPPPPAKTTVVVPQGSGATVVCNN
Ga0187871_100606684	3300018042	Peatland	MKVLLSAMIAAGLMLSGCISSSSPPPPQKTTVVVPPGSTTTVVCANGNPPPCD
Ga0187890_104858851	3300018044	Peatland	MKMIASAMLAACLLAGCISSSSPPPPAKNTTVVVPQNGTTVVCQSGNPPPCD
Ga0182031_10839162	3300019787	Bog	MKVLFSGVLAAGLLAGCISSSSPPPPARTTVVVPQGSGATVVCQNGNPPPCD
Ga0193726_1000033133	3300020021	Soil	MKILSALVVASAMLCGCISSGSPNPPAKTTVVVPPGSHTTVVCQDGSQPPCE
Ga0193726_10081627	3300020021	Soil	MKLLISMLLAVSMLSGCISSSNPSPPAKTTVVVPQNSGTTVVCQDGSQPPC
Ga0210388_102850882	3300021181	Soil	MKILSALVLASAMLCGCISSGSPNPPAKTTVVVPPGSQTTVVCQDGSRPPCN
Ga0210393_100698233	3300021401	Soil	MKILSALVVASAMLCGCISSGSPNPPAKTTVVVPPGSSTTVVCQDGSRPPCN
Ga0210385_101511443	3300021402	Soil	MKILSALVVATAMLCGCISSGSPNPPAKTTVVVPPGSSTTVVCQDGSRPPCN
Ga0210385_106055762	3300021402	Soil	MKVLFSAMVAAGLLAGCISSSNPPPPQKTTVVVPQGSTTTVVCQNGSPPPCD
Ga0210397_101171481	3300021403	Soil	MKILSALVLASAMLCGCISSGSPNPPAKTTVVVPPGSSTTVVCQDGSRPPCN
Ga0210389_108104191	3300021404	Soil	MAAEMLSGCISSSSPPPPAKTTVVVPPSNGTTVVCQNGNAPPCD
Ga0210387_108765452	3300021405	Soil	EDATMNILSALLVTAGLVSGCISSSSPEPPAKTTVVVLANSTTTVVCQDGTKPPC
Ga0210386_100904381	3300021406	Soil	MKVLSSLLVAVSMLSGCISSSNPSPPPKTTVVVPQNSGTTVVCADGSSPPCP
Ga0210394_115367492	3300021420	Soil	MKVLFSAMAAAGLLAGCISSSSPPPPQKTTVVVPQGSTTTVVCQ
Ga0210391_100256644	3300021433	Soil	MKILSALVVATAMLCGCISSGSPNPPAKTTVVVPPGSSTTVVCQDGSQPPCN
Ga0210391_105354622	3300021433	Soil	MKVILCAVFAAGLLAGCISSSSPPPPAKTTVVVPQSSGTTVVCQNGNPPPCD
Ga0210390_102107421	3300021474	Soil	MKVLLSAMIAAGMLAGCISSSSPEPPAKTTVVVPPGSTTTVVCQNGNPPPCD
Ga0210398_109565791	3300021477	Soil	SAVFAAGLLAGCVTSPPGTSVVVPQGGSTTCENGNPPPCD
Ga0210402_100639573	3300021478	Soil	MMKVLSSLVVALALLSGCISSSSPPPPAEKTTVVVPPGSSTTVVCQDGSTPPC
Ga0224557_10747292	3300023101	Soil	MKVLCSMLIAASMLGGCISSSNPSPPAKTTVVVPQNSGTTVVVCQDGTKPPCT
Ga0208193_10115822	3300025463	Peatland	MKILASLLVAASMLAGCISSSNPSPPAKTTVVVPQNSGGTTVVCQDGTQPPCR
Ga0208193_10155791	3300025463	Peatland	MKVLASLLVAASMLAGCISSNHPSPPAKTTVVVPQNSEPAKTTVVVPQNSGGTTVVCQDGTRPPCN
Ga0208992_10586252	3300027176	Forest Soil	MKILSALVVTAGLLSGCISSSSPEPPAKTTVVVPSNSTTTVICQDGSKPPC
Ga0209218_10572302	3300027505	Forest Soil	MKILSALVLASAMLCGCISSGSPNPPAKTTVVVPPGSQTTVVCQDGSQPPCN
Ga0208985_100017410	3300027528	Forest Soil	MKTLATLIIAAGMLCGCISSSSPPPPAKTTVVVPPNSTTTVVCQDGTKPPCE
Ga0209222_10020864	3300027559	Forest Soil	MKVLASLLVAASMLTGCISSSNPSPPAKTTVVVPQNSGQGTTVVCQDGTRPPCN
Ga0209222_10089322	3300027559	Forest Soil	MKILSALVLASAMLCGCISSGSPNPPAKTTVVVPAGSQTTVVCQDGSRPPCN
Ga0209221_10013975	3300027609	Forest Soil	MKILSALMLASAMLCGCISSGSPNPPAKTTVVVPAGSQTTVVCQDGSRPPCN
Ga0209221_11609071	3300027609	Forest Soil	MKVLASMLVAASMLSGCISSSHPSAPAKTTVVVPQNSGGTTVVCQDGTKPPCN
Ga0209208_1000028034	3300027807	Host-Associated	MKMVSSIAVIACLLSGCISSSSPPAPQKNTTVIVPQGGNAVCQDGSQPPCK
Ga0209208_100359533	3300027807	Host-Associated	MKIVASVSLAACLLSGCISSSSPPPPPEKTTVVVPRDSGTVVVCQDGSKPPCH
Ga0209208_100778662	3300027807	Host-Associated	MKVLSSFCVAACLLSGCISSSSPPPPEKNTTVVVPHDSGTVVVCQDGTKPPCH
Ga0209611_100138538	3300027860	Host-Associated	MKVLASFVVAASLLSGCISSSSPPPPAKNTTVVVPQNSGTTVVCQDGTKPPCS
Ga0209611_101078843	3300027860	Host-Associated	MKILASCVLAASLLSGCISSSSPPPPAKNTTVVVPQNSGTTVVCQDGTRPPC
Ga0209611_101316912	3300027860	Host-Associated	MKIISSLLLIASLLSGCISSSSPPPPAKTTVVVPPNSSTTVVCQDGTRPPCN
Ga0209169_100226664	3300027879	Soil	MKILSALVVATTMLCGCISSGSPNPPAKTTVVVPPGSSTTVVCQDGSRPPCN
Ga0209380_100510302	3300027889	Soil	MKILSTLVLASAMLCGCISSGSPNPPEKTTVVVPPGSTTTVVCQDGSRPPCN
Ga0209624_110982832	3300027895	Forest Soil	MKVLFSAMVAAGLLAGCISSSSPPPPQKTTVVVPQGSTTTVVCQNGSPPPCD
Ga0209006_109497292	3300027908	Forest Soil	MMKLLAGLLVAGSMLSGCISSSDPSPPQKTTVVVPQNSGTTVVCQDGTKPPCN
Ga0209062_10949271	3300027965	Surface Soil	MRMIASALVTAGLLAGCISSSSPPPPQKTTVVVPQGGQTTVVCQNGAPPPCT
Ga0137415_100997663	3300028536	Vadose Zone Soil	MKVLSGLLVAVSMLSGCISSSNPSPPPKTTVVVPQNSGTTVVCQDRQFCAA
Ga0302234_101963161	3300028773	Palsa	MKMISTMVLAACVLAGCISSSSPPEPAKNTTVVVPPSNGTTVVRQDGSRPPC
Ga0302234_103691521	3300028773	Palsa	MKIISTMVLAACVLTGCISSSSPPEPAKNTTVVVPPGNGTTVVCQDGSRPPC
Ga0302226_104807111	3300028801	Palsa	MKMISTMVLAACVLAGCISSSSPPEPAKNTTVIVPPSNGTTVVCQDGSRPPC
Ga0302229_101888542	3300028879	Palsa	MKALLSAMVAAGLLAGCISSSSPPPPQKTTVVVPPSSTTTVVCQNGGPP
Ga0308309_112440432	3300028906	Soil	MKILSALVMASAMLCGCISSGSPNPPAKTTVIVPPGSSTTVVCQDGSQPPCG
Ga0311361_102656993	3300029911	Bog	MKALLGTLVAAGLLAGCISSSSPPPPAKTTVVVPAGSTTTVVCQNGNPPPCD
Ga0311362_113859391	3300029913	Bog	MKISYSLVVAACLLTGCISSSNPSPPEKTTVVVPSNSGTTVVCQDGTHPPCR
Ga0311363_109027332	3300029922	Fen	ALLGTLVAAGLLAGCISSSSPPPPAKTTVVVPAGSTTTVVCQNGNPPPCD
Ga0311363_111040612	3300029922	Fen	MKTLFIMVVAASMMSGCISSSSPPPPAKTTVVVPPSSGTTVVCQNGSSPPCN
Ga0311340_102534053	3300029943	Palsa	MKTFVTAMIAIPALLLAGCISSSSPPAPAKTTVVVPQNSTTTVVCSDGSSPPCK
Ga0311371_100987714	3300029951	Palsa	MRITSTFVLAACMLAGCISSSSPPEPAKNTTVVVPPSNGTTVVCQDGSRPPC
Ga0311331_101629642	3300029954	Bog	MKTLSSLLIAASMLAGCISSSNPAPPQKTTVVVPQGSTTTVVCQDGSSPPCR
Ga0311370_102093462	3300030503	Palsa	MKVLFSMVIAAAMLSGCISSSNPPPPAKNTTVVVPQSNGTTVVCQNGSNPPC
Ga0311372_104456241	3300030520	Palsa	SDLRGGDMKVLFSMVIAAAMLSGCISSSNPPPPAKNTTVVVPPSNGTTVVCQNGSNPPC
Ga0311355_102106093	3300030580	Palsa	MKILSTLVLASALLCGCISSGSPNPPEKTTVVVPPGSTTTVVCQDGSRPPCN
Ga0311356_102861072	3300030617	Palsa	MKMISTMVLAACVLAGCISSSSPPEPAKNTTVVVPPSNGTTVVCQDG
Ga0302308_108418442	3300031027	Palsa	MRITSTFVLAACMLAGCISSSSPPEPAKNTTVVVPPSNGTTVVCQD
Ga0074012_111209892	3300031029	Soil	GALVAAGLLAGCISSSSPPPPAKTTVVVPPSNSTTVVCQDGTHPPCN
Ga0302324_100000148137	3300031236	Palsa	MKILAGFVVAAAMLSGCISSSSPPPPARTTVVVPSGSTTTVVCQNGTQPPCN
Ga0302324_1008567052	3300031236	Palsa	MKVLFSMVIAAAMLSGCISSSNPPPPAKNTTVVVPPSNGTTVVCQNGSNPPC
Ga0302324_1008934872	3300031236	Palsa	MKLLLSAMIAAGVMLSGCISSSSPPAPQKTTVVVPPGSTTTVVCQNGNAPPCN
Ga0302326_122873991	3300031525	Palsa	MKLLLSAMIAAGVMLSGCISSSSPPAPQKTTVVVPAGSTTTVVCQNGNPPPCD
Ga0307374_1002024610	3300031670	Soil	MKILSTITVAAALLLGGCISSSSPPAPQKSTTVIVPQGSGTTVVCQDGTHPPCN
Ga0307374_101411711	3300031670	Soil	MKILSAVAVAAALLLGGCISSSSPPPPQKSTTVIVPQGSGTTVVCQDGTHPPCN
Ga0310686_1009128861	3300031708	Soil	MKVFLSAVFAAGLLAGCISSSSPPPPAKTTVVVPQGSGTTVVCQNGNPPPFD
Ga0310686_1037559561	3300031708	Soil	MRYLSSLLILASMLAGCISSGSPNPPAHNTTVVVPPSNGTTVVCTNGNPPPCD
Ga0310686_1045097489	3300031708	Soil	MKTFVTAMIAIPALLLSGCISSSSPPAPAKTTVVVPQNSTTTVVCSDGSSPPCR
Ga0310686_1048955862	3300031708	Soil	MKMLASAMMAACLLAGCISSSSPPPPKETTVVVPAGSTTTVVCQDGAAPPC
Ga0310686_10775530810	3300031708	Soil	MKMVASTMLAACLLAGCISSSSPPAPKNTTVVVPPSNTTTVVCQNGNPPPCD
Ga0307476_105884911	3300031715	Hardwood Forest Soil	MKVLLSAMVAAGLLAGCISSSSPPPPQKTTVVVPQGSTTTVVCQNGNPPPSD
Ga0307478_101608033	3300031823	Hardwood Forest Soil	MKVLLSAMAAAGLLAGCISSSSPPPPQKTTVVVPPGSTTTVVCQNGNPPPCD
Ga0307478_109687872	3300031823	Hardwood Forest Soil	MKVLMSAVFAAGLLAGCISSSSPPPPAKTTVVVPQGSGATVVCENGNPPPCD
Ga0311301_101323007	3300032160	Peatlands Soil	MKIAVVSAMVAACLLSGCVSSSSPPAPAKTTVVVPQNGTTVVCQNGSQPPC
Ga0335075_100058617	3300032896	Soil	MKVLLSALIATGLLAGCISSSSPAPPQKTTVVVPQGSTTTVVCENGNPPPCD
Ga0335075_102649472	3300032896	Soil	MKTLASLIVLSTLLLAGCISSSSPPPPAHTTVVVPPSSHTTVVCQDGSAPPCN
Ga0335072_102761111	3300032898	Soil	MKALMSLMIAAGMLAGCISSSSPAPPAKTTVVVPPGSTTTVVCNNGNPPPCD
Ga0335072_105585392	3300032898	Soil	MKMLFSAAIAGLCLAGCISSSSPAPPAKTTVVVPQASGTTVVCDNGNPPPCD
Ga0326728_100548085	3300033402	Peat Soil	MKGSINAVLAASAVLTAALLGGCISSSSPPPPAKTTVVVPPGSGTTVVCQNGSQPPCN
Ga0334827_254477_235_393	3300034065	Soil	MKVLFSAVLAAGLLAGCISSSSPPPPAKTTVVVPQGSGATVICQNGNPPPCD
Ga0370509_0354139_372_539	3300034159	Untreated Peat Soil	RAVRTHLNLLLVPVALMLASCISSSNPSPPEHNTTVIVPQGSTVVCSDGSSPPCR
Ga0370492_0019885_2275_2472	3300034282	Untreated Peat Soil	MRYDIVPHEQELLMKVLFSAVFAAGLLAGCISSSSPPPPARTTVVVPQSSGATVVCQNGNPPPCD

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F078975

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences